RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6501
(174 letters)
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Length = 69
Score = 44.4 bits (105), Expect = 1e-07
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ L + R AKG SQ+ LA V E G+ + I K+ AL I
Sbjct: 10 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEP 65
Score = 40.9 bits (96), Expect = 3e-06
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ L + R AKG SQ+ LA V E G+ + I K+ AL
Sbjct: 10 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATAL 61
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related
factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 43.5 bits (102), Expect = 5e-07
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86
++V L++ K++ QGRQ+KG +QKDLATKINEKPQ++ DYE GR IPN ++GK+ERA+G+
Sbjct: 1 DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGL 60
Query: 87 RLR 89
+LR
Sbjct: 61 KLR 63
Score = 36.5 bits (84), Expect = 1e-04
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 117 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
++V L++ K++ QGRQ+KG +QKDLATKINEKPQ++ DYE GR IPN ++GK+ERA+
Sbjct: 1 DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAI 58
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus
caldolyticus [TaxId: 1394]}
Length = 77
Score = 42.5 bits (100), Expect = 9e-07
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ L + R KG SQ++LA +++ E G + I K+ AL I
Sbjct: 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPA 66
Score = 39.4 bits (92), Expect = 1e-05
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ L + R KG SQ++LA +++ E G + I K+ AL
Sbjct: 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAAL 62
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain
{Bacillus subtilis [TaxId: 1423]}
Length = 68
Score = 39.7 bits (93), Expect = 8e-06
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE-GGRGIPNQAIIGKMERALGIRL 88
+ + + Q R+ KG+S +LA K ++ E + P+ + K+ L + +
Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSV 58
Score = 36.3 bits (84), Expect = 1e-04
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE-GGRGIPNQAIIGKMERAL 174
+ + + Q R+ KG+S +LA K ++ E + P+ + K+ L
Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVL 54
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2
{Enterococcus faecalis [TaxId: 1351]}
Length = 66
Score = 39.1 bits (91), Expect = 1e-05
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ L R+ K SQ +LA + Q +N E + P+ + K+ L L
Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPL 57
Score = 35.6 bits (82), Expect = 2e-04
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ L R+ K SQ +LA + Q +N E + P+ + K+ L
Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYL 53
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator
VC1968, N-terminal domain {Vibrio cholerae [TaxId:
666]}
Length = 79
Score = 39.1 bits (91), Expect = 2e-05
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+A L R+++G S A ++ E G P A + K+ L
Sbjct: 9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASF 64
Score = 35.7 bits (82), Expect = 3e-04
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+A L R+++G S A ++ E G P A + K+ L
Sbjct: 9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGL 60
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain
{Salmonella bacteriophage P22 [TaxId: 10754]}
Length = 66
Score = 37.5 bits (87), Expect = 5e-05
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
+ + + R+ Q L + ++ +E PN + + +AL
Sbjct: 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSP 59
Score = 34.4 bits (79), Expect = 6e-04
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
+ + + R+ Q L + ++ +E PN + + +AL
Sbjct: 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 55
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
{Bacteriophage lambda [TaxId: 10710]}
Length = 87
Score = 35.1 bits (80), Expect = 6e-04
Identities = 10/56 (17%), Positives = 20/56 (35%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
L + + + G SQ+ +A K+ V G N + + L + +
Sbjct: 13 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSV 68
Score = 32.4 bits (73), Expect = 0.007
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
L + + + G SQ+ +A K+ V G N + + L
Sbjct: 13 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKIL 64
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Length = 65
Score = 34.0 bits (78), Expect = 0.001
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
L++ L + R A +Q +LATK K Q + E G + + ++ AL
Sbjct: 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLF-EIAMALNCDP 58
Score = 31.0 bits (70), Expect = 0.011
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
L++ L + R A +Q +LATK K Q + E G + + ++ AL
Sbjct: 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLF-EIAMAL 54
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 34.2 bits (78), Expect = 0.001
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 35 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86
++ + S ++ A + P + G+ + K+ +G
Sbjct: 4 DIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGS 55
Score = 31.5 bits (71), Expect = 0.014
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 125 KLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
++ + S ++ A + P + G+ + K+ +
Sbjct: 4 DIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVI 53
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain
{Bacteriophage 434 [TaxId: 10712]}
Length = 63
Score = 33.3 bits (76), Expect = 0.002
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 33 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGIRL 88
++ + R G +Q +LA K+ Q + E G+ + ++ ALG+ +
Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSV 56
Score = 30.2 bits (68), Expect = 0.024
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 123 LAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERAL 174
++ + R G +Q +LA K+ Q + E G+ + ++ AL
Sbjct: 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASAL 52
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 62
Score = 33.2 bits (76), Expect = 0.002
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 41 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAII 77
R+A +Q++ + + + + D+E GR P+Q
Sbjct: 8 RRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPAR 44
Score = 33.2 bits (76), Expect = 0.002
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 131 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAII 167
R+A +Q++ + + + + D+E GR P+Q
Sbjct: 8 RRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPAR 44
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471
C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Length = 67
Score = 32.0 bits (73), Expect = 0.005
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 41 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI 76
S A + ++V+ Y I + I
Sbjct: 10 MHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTI 45
Score = 32.0 bits (73), Expect = 0.005
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 131 RQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAI 166
S A + ++V+ Y I + I
Sbjct: 10 MHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTI 45
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas
europaea [TaxId: 915]}
Length = 69
Score = 29.0 bits (64), Expect = 0.080
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 28 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIG-KMERALGI 86
K+ L +L + + G +Q A + V+D G+ M ++G+
Sbjct: 2 KMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGL 61
Query: 87 RLRV 90
++ +
Sbjct: 62 KVEI 65
Score = 24.3 bits (52), Expect = 2.9
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 118 KVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE 156
K+ L +L + + G +Q A + V+D
Sbjct: 2 KMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLM 40
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 89
Score = 28.3 bits (62), Expect = 0.16
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 1/62 (1%)
Query: 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYE-GGRGIPNQAIIGKMERALG 85
+ L LA L SQ A ++ V+ + + + AL
Sbjct: 6 RQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALD 65
Query: 86 IR 87
Sbjct: 66 QD 67
Score = 26.7 bits (58), Expect = 0.71
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 117 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGR 159
+ L LA L SQ A ++ V+ +
Sbjct: 6 RQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYK 48
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 86
Score = 25.9 bits (57), Expect = 1.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 31 LDLAKLLMQGRQAKGWSQKDLATKIN 56
LDLA ++ + K S ++A
Sbjct: 12 LDLADAILLSKAKKDLSFAEIADGTG 37
Score = 25.9 bits (57), Expect = 1.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 121 LDLAKLLMQGRQAKGWSQKDLATKIN 146
LDLA ++ + K S ++A
Sbjct: 12 LDLADAILLSKAKKDLSFAEIADGTG 37
>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
{African clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 359
Score = 25.7 bits (56), Expect = 3.3
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 27 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKPQIVNDYEGGRGIPNQAIIGKMERALGI 86
K L+LA + + +Q GWS KDL + KP N+ + +
Sbjct: 154 TKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKP------------ANEGLTMVAKYVSKG 201
Query: 87 RLRVNAGTNKQPGTTKNTAKLD--RETEELKHEKVPLDLAKLLMQGR 131
V ++ + + L TE +K K L++ L+ + R
Sbjct: 202 WKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEIIHLIDEYR 248
Score = 25.3 bits (55), Expect = 4.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 117 EKVPLDLAKLLMQGRQAKGWSQKDLATKINEKP 149
K L+LA + + +Q GWS KDL + KP
Sbjct: 154 TKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKP 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.130 0.364
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 587,244
Number of extensions: 24071
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 34
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.3 bits)