BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6503
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 7 HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 45
H+TQVVW++S +LG G AR NG + NYDP GN+ GQ
Sbjct: 93 HYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGN 41
GHFT +VWK++ K+GVG A +G VVA Y P GN
Sbjct: 102 GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGN 138
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGN 41
GHFT +VWK++ K+GVG A +G VVA Y P GN
Sbjct: 102 GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGN 138
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 5 LGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 45
+GH+TQ+ W ++ KLG + N V Y P GNY G
Sbjct: 356 IGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGH 396
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 5 LGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 45
+GH+TQ+VW+ + KLG + + VV Y P GN G+
Sbjct: 132 VGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 5 LGHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYA 47
+GH+TQVVW S +G A+ + L V Y P GN +G A
Sbjct: 104 IGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIA 147
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 35.0 bits (79), Expect = 0.010, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 5 LGHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYA 47
+GH+TQVVW S +G A+ + L V Y P GN +G A
Sbjct: 105 IGHYTQVVWYKSYLIGCASAKCSSSKYLYVCQYCPAGNIRGSIA 148
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 6 GHFTQVVWKSSSKLGVGI----------ARKNGHILVVANYDPPGNY 42
GH+TQVVW S K+G + A NG + NY P GNY
Sbjct: 121 GHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHF-ICNYGPGGNY 166
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 6 GHFTQVVWKSSSKLGVG----IARKNGHILVVANYDPPGNYQGQ 45
GH+TQ+VW ++ ++G G I K +V NY P GN++ +
Sbjct: 160 GHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNE 203
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 1 MVIYLGHFTQVVWKSSSKLGVG-IARK-----NGHILVVANYDPPGNYQG 44
+++ +GH+TQ+VW ++K+G G I K H L V NY P GN G
Sbjct: 156 ILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYL-VCNYGPAGNVLG 204
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 6 GHFTQVVWKSSSKLGVGIA---RKNGHILVVANYDPPGNYQGQYA 47
GH+TQ+VW + + G ++ V Y P GN+QG+ A
Sbjct: 114 GHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTA 158
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 33.1 bits (74), Expect = 0.045, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 6 GHFTQVVWKSSSKLGVGIA---RKNGHILVVANYDPPGNYQGQYA 47
GH+TQ+VW + + G ++ V Y P GN+QG+ A
Sbjct: 114 GHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTA 158
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 6 GHFTQVVWKSSSKLGVGIA---RKNGHILVVANYDPPGNYQGQYANNNLEG 53
GH+TQ+VW S ++G A V Y P GN+ G+ A G
Sbjct: 114 GHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPYTSG 164
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 5 LGHFTQVVWKSSSKLGVGIA---RKNGHILVVANYDPPGNYQGQYA 47
+GH+TQ+VW S + G A V Y P GN G+ A
Sbjct: 113 IGHYTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGKTA 158
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 30.0 bits (66), Expect = 0.34, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 4 YLGHFTQVVWKSSSKLGVGIARKNGHILVVANYD 37
+ GH+T V ++ + G G+A N HI VV +D
Sbjct: 183 HTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD 216
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 204 HFTHQFFKTSGKMGPGFTKALGH 226
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 180 HFTHQFFKTSGKMGPGFTKALGH 202
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 204 HFTHQFFKTSGKMGPGFTKALGH 226
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 180 HFTHQFFKTSGKMGPGFTKALGH 202
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 184 HFTHQFFKTSGKMGPGFTKALGH 206
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 172 HFTHQFFKTSGKMGPGFTKALGH 194
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 173 HFTHQFFKTSGKMGPGFTKALGH 195
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 173 HFTHQFFKTSGKMGPGFTKALGH 195
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 173 HFTHQFFKTSGKMGPGFTKALGH 195
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 172 HFTHQFFKTSGKMGPGFTKALGH 194
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 HFTQVVWKSSSKLGVGIARKNGH 29
HFT +K+S K+G G + GH
Sbjct: 172 HFTHQFFKTSGKMGPGFTKALGH 194
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 10 QVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNN 50
Q + + +GV IA K G+IL N P + N N
Sbjct: 68 QTYYDLALPMGVNIADKKGNILSTKNVKPENRFDNPEINRN 108
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 15 SSSKLGVGIARKNGHILVVANYDPPGNYQG 44
+ SK+ + A G LV+AN DP Y+G
Sbjct: 174 NGSKMWISSAEHAGLFLVMANVDPTIGYKG 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,152,697
Number of Sequences: 62578
Number of extensions: 68629
Number of successful extensions: 230
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 34
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)