Query psy6503
Match_columns 60
No_of_seqs 128 out of 1041
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 99.8 4.8E-19 1E-23 105.6 5.7 46 3-48 89-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 99.7 9.8E-18 2.1E-22 99.2 5.3 42 3-44 86-129 (129)
3 KOG3017|consensus 99.7 2.8E-17 6E-22 104.6 2.3 54 2-55 145-205 (225)
4 cd05382 SCP_GAPR-1_like SCP_GA 99.6 1E-16 2.2E-21 94.5 3.1 40 3-42 92-132 (132)
5 cd05383 SCP_CRISP SCP_CRISP: S 99.6 2E-15 4.4E-20 90.5 4.3 38 2-39 98-138 (138)
6 cd05385 SCP_GLIPR-1_like SCP_G 99.5 8.7E-15 1.9E-19 88.2 4.2 37 3-39 102-144 (144)
7 smart00198 SCP SCP / Tpx-1 / A 99.5 1.6E-14 3.5E-19 86.1 4.1 38 2-39 103-144 (144)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 99.3 7.6E-13 1.6E-17 79.2 3.5 35 3-37 94-136 (136)
9 cd05380 SCP_euk SCP_euk: SCP-l 99.3 1.2E-12 2.6E-17 77.2 3.1 35 3-37 106-144 (144)
10 cd00168 SCP SCP: SCP-like extr 99.3 2.4E-12 5.3E-17 75.1 4.3 35 3-37 87-122 (122)
11 PF00188 CAP: Cysteine-rich se 98.9 2.7E-09 5.7E-14 59.0 4.6 34 3-36 88-124 (124)
12 cd05379 SCP_bacterial SCP_bact 96.7 0.003 6.6E-08 35.6 3.8 32 5-36 89-121 (122)
13 TIGR02909 spore_YkwD uncharact 96.6 0.0049 1.1E-07 36.4 4.1 33 4-36 92-125 (127)
14 KOG0286|consensus 52.3 11 0.00023 26.6 1.7 15 29-43 98-112 (343)
15 PF08693 SKG6: Transmembrane a 29.4 47 0.001 16.4 1.5 12 14-25 8-19 (40)
16 PF12197 lci: Bacillus cereus 28.1 34 0.00074 17.4 0.9 17 33-49 3-19 (45)
17 KOG0793|consensus 26.2 32 0.0007 27.1 0.8 34 2-39 813-851 (1004)
18 PHA00684 hypothetical protein 23.0 28 0.00061 21.4 0.0 10 16-25 79-88 (128)
19 KOG0792|consensus 22.6 1.1E+02 0.0023 25.2 3.0 35 4-39 950-986 (1144)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.78 E-value=4.8e-19 Score=105.59 Aligned_cols=46 Identities=43% Similarity=0.927 Sum_probs=41.4
Q ss_pred cccchHHHHHhhcCceEEEEEEee-C-CCEEEEEEeeCCCCCCCcccc
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-N-GHILVVANYDPPGNYQGQYAN 48 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~-~~~~vvC~Y~P~GN~~g~~~~ 48 (60)
+.++|||||||++|++||||++.+ + +..++||+|+|+||+.|+++|
T Consensus 89 ~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 89 KMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred ccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence 368999999999999999999994 3 478999999999999999876
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.72 E-value=9.8e-18 Score=99.16 Aligned_cols=42 Identities=43% Similarity=0.783 Sum_probs=37.6
Q ss_pred cccchHHHHHhhcCceEEEEEEeeCC--CEEEEEEeeCCCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKNG--HILVVANYDPPGNYQG 44 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~~--~~~vvC~Y~P~GN~~g 44 (60)
+.++|||||||++|++||||++.|++ ..++||+|+|.||+.|
T Consensus 86 ~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 86 EATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence 57899999999999999999999543 6889999999999875
No 3
>KOG3017|consensus
Probab=99.66 E-value=2.8e-17 Score=104.62 Aligned_cols=54 Identities=41% Similarity=0.693 Sum_probs=45.0
Q ss_pred CcccchHHHHHhhcCceEEEEEEee-CC-----CEEEEEEeeCCCCCCC-cccccCCCCCc
Q psy6503 2 VIYLGHFTQVVWKSSSKLGVGIARK-NG-----HILVVANYDPPGNYQG-QYANNNLEGNL 55 (60)
Q Consensus 2 ~~~~ghftqmvW~~t~~vGCa~~~~-~~-----~~~vvC~Y~P~GN~~g-~~~~nV~~p~~ 55 (60)
.+.+||||||||++|++||||+..| ++ .+++||+|+|+||... +.+|+.++|-.
T Consensus 145 ~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y~~g~~cs 205 (225)
T KOG3017|consen 145 GEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPYKGGKPCS 205 (225)
T ss_pred CCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcCCCCCccC
Confidence 3679999999999999999999993 33 6799999999966554 78998887654
No 4
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.64 E-value=1e-16 Score=94.54 Aligned_cols=40 Identities=60% Similarity=1.026 Sum_probs=36.2
Q ss_pred cccchHHHHHhhcCceEEEEEEee-CCCEEEEEEeeCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-NGHILVVANYDPPGNY 42 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~~~~~vvC~Y~P~GN~ 42 (60)
..+||||||||++|++||||++.+ ++.+++||+|+|+||+
T Consensus 92 ~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 92 SKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV 132 (132)
T ss_pred CCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence 468999999999999999999994 4678999999999985
No 5
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.58 E-value=2e-15 Score=90.46 Aligned_cols=38 Identities=34% Similarity=0.604 Sum_probs=33.1
Q ss_pred CcccchHHHHHhhcCceEEEEEEee-CC--CEEEEEEeeCC
Q psy6503 2 VIYLGHFTQVVWKSSSKLGVGIARK-NG--HILVVANYDPP 39 (60)
Q Consensus 2 ~~~~ghftqmvW~~t~~vGCa~~~~-~~--~~~vvC~Y~P~ 39 (60)
+..++|||||||++|++||||++.| ++ ++++||+|+|+
T Consensus 98 ~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~ 138 (138)
T cd05383 98 GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA 138 (138)
T ss_pred CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence 3579999999999999999999994 32 68999999984
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.53 E-value=8.7e-15 Score=88.22 Aligned_cols=37 Identities=43% Similarity=0.682 Sum_probs=32.0
Q ss_pred cccchHHHHHhhcCceEEEEEEee-CC-----CEEEEEEeeCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-NG-----HILVVANYDPP 39 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~~-----~~~vvC~Y~P~ 39 (60)
+.+||||||||++|++||||++.| ++ .+++||+|+|.
T Consensus 102 ~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 102 RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 568999999999999999999984 32 37899999984
No 7
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.51 E-value=1.6e-14 Score=86.11 Aligned_cols=38 Identities=47% Similarity=0.945 Sum_probs=32.7
Q ss_pred CcccchHHHHHhhcCceEEEEEEe-eCCC---EEEEEEeeCC
Q psy6503 2 VIYLGHFTQVVWKSSSKLGVGIAR-KNGH---ILVVANYDPP 39 (60)
Q Consensus 2 ~~~~ghftqmvW~~t~~vGCa~~~-~~~~---~~vvC~Y~P~ 39 (60)
++.++|||||||++|++||||++. .++. +++||+|+|+
T Consensus 103 ~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 103 NGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred ccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 357899999999999999999999 3432 7999999984
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.35 E-value=7.6e-13 Score=79.20 Aligned_cols=35 Identities=40% Similarity=0.661 Sum_probs=30.0
Q ss_pred cccchHHHHHhhcCceEEEEEEee-C-------CCEEEEEEee
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-N-------GHILVVANYD 37 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~-------~~~~vvC~Y~ 37 (60)
+.++|||||||++|++||||++.| + ...++||+|+
T Consensus 94 ~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 94 KMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred CcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 468999999999999999999984 2 1478999995
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.32 E-value=1.2e-12 Score=77.21 Aligned_cols=35 Identities=43% Similarity=0.815 Sum_probs=30.8
Q ss_pred cccchHHHHHhhcCceEEEEEEee-C---CCEEEEEEee
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-N---GHILVVANYD 37 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~---~~~~vvC~Y~ 37 (60)
..++|||||||++|++||||++.+ . ...++||+|+
T Consensus 106 ~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 106 SGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred cchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 568999999999999999999983 3 4789999995
No 10
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.32 E-value=2.4e-12 Score=75.11 Aligned_cols=35 Identities=46% Similarity=0.776 Sum_probs=31.1
Q ss_pred cccchHHHHHhhcCceEEEEEEeeC-CCEEEEEEee
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKN-GHILVVANYD 37 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~-~~~~vvC~Y~ 37 (60)
..++|||||||++|++||||++.+. ++.++||+|.
T Consensus 87 ~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~ 122 (122)
T cd00168 87 SGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG 122 (122)
T ss_pred CCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence 4589999999999999999999844 6889999994
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=98.91 E-value=2.7e-09 Score=58.97 Aligned_cols=34 Identities=35% Similarity=0.742 Sum_probs=26.8
Q ss_pred cccchHHHHHhhcCceEEEEEEee-CCC--EEEEEEe
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-NGH--ILVVANY 36 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~~~--~~vvC~Y 36 (60)
..++||+||+|.++++||||++.+ ++. +++||.|
T Consensus 88 ~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y 124 (124)
T PF00188_consen 88 NSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY 124 (124)
T ss_dssp STCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred CchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence 457999999999999999999994 444 9999998
No 12
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=96.73 E-value=0.003 Score=35.65 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=26.6
Q ss_pred cchHHHHHhhcCceEEEEEEe-eCCCEEEEEEe
Q psy6503 5 LGHFTQVVWKSSSKLGVGIAR-KNGHILVVANY 36 (60)
Q Consensus 5 ~ghftqmvW~~t~~vGCa~~~-~~~~~~vvC~Y 36 (60)
.+|+.+|++.+.+++|||+.. .++..+.+..|
T Consensus 89 ~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f 121 (122)
T cd05379 89 PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF 121 (122)
T ss_pred HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence 589999999999999999998 55666666654
No 13
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=96.58 E-value=0.0049 Score=36.40 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=25.9
Q ss_pred ccchHHHHHhhcCceEEEEEEe-eCCCEEEEEEe
Q psy6503 4 YLGHFTQVVWKSSSKLGVGIAR-KNGHILVVANY 36 (60)
Q Consensus 4 ~~ghftqmvW~~t~~vGCa~~~-~~~~~~vvC~Y 36 (60)
..+|+++|+|.+.+++|||++. .+++.|.+=.|
T Consensus 92 S~gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F 125 (127)
T TIGR02909 92 SPGHRANILNPNYTEIGVGYVEGGSGGIYWTQMF 125 (127)
T ss_pred CHhHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEe
Confidence 3589999999999999999998 55555554333
No 14
>KOG0286|consensus
Probab=52.35 E-value=11 Score=26.56 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=13.3
Q ss_pred CEEEEEEeeCCCCCC
Q psy6503 29 HILVVANYDPPGNYQ 43 (60)
Q Consensus 29 ~~~vvC~Y~P~GN~~ 43 (60)
.++|.|-|+|.||++
T Consensus 98 ~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFV 112 (343)
T ss_pred eeEEEEEECCCCCeE
Confidence 688999999999974
No 15
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=29.41 E-value=47 Score=16.40 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.4
Q ss_pred hcCceEEEEEEe
Q psy6503 14 KSSSKLGVGIAR 25 (60)
Q Consensus 14 ~~t~~vGCa~~~ 25 (60)
+++..||||++.
T Consensus 8 ~~~vaIa~~VvV 19 (40)
T PF08693_consen 8 SNTVAIAVGVVV 19 (40)
T ss_pred CceEEEEEEEEe
Confidence 457789999876
No 16
>PF12197 lci: Bacillus cereus group antimicrobial protein; InterPro: IPR020976 This entry represents antimicrobial peptides from bacteria of approximately 40 amino acids in length.; PDB: 2B9K_A.
Probab=28.08 E-value=34 Score=17.37 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=9.1
Q ss_pred EEEeeCCCCCCCccccc
Q psy6503 33 VANYDPPGNYQGQYANN 49 (60)
Q Consensus 33 vC~Y~P~GN~~g~~~~n 49 (60)
.|-|++.|.+.+.|.++
T Consensus 3 ~~~~~~nGvFAN~F~~~ 19 (45)
T PF12197_consen 3 KCMYSSNGVFANSFSDD 19 (45)
T ss_dssp EEEEETT-----EEEET
T ss_pred EEEEcCCCceEEEEEcC
Confidence 58899999888877654
No 17
>KOG0793|consensus
Probab=26.19 E-value=32 Score=27.13 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=21.1
Q ss_pred CcccchHHHHHhhcCceEEEEEEe--e---CCCEEEEEEeeCC
Q psy6503 2 VIYLGHFTQVVWKSSSKLGVGIAR--K---NGHILVVANYDPP 39 (60)
Q Consensus 2 ~~~~ghftqmvW~~t~~vGCa~~~--~---~~~~~vvC~Y~P~ 39 (60)
+..+.||=||||.+ ||-+.. + .++..---+|+|.
T Consensus 813 ~stiA~FWQmvWe~----G~~vIV~Lt~l~Engv~qc~rYWPd 851 (1004)
T KOG0793|consen 813 PSTIADFWQMVWES----GCVVIVMLTPLAENGVRQCYRYWPD 851 (1004)
T ss_pred chHHHHHHHHHHHc----CcEEEEEecChhhcchhhhhhcCCC
Confidence 45678999999987 555443 2 1222233368885
No 18
>PHA00684 hypothetical protein
Probab=23.01 E-value=28 Score=21.39 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=8.3
Q ss_pred CceEEEEEEe
Q psy6503 16 SSKLGVGIAR 25 (60)
Q Consensus 16 t~~vGCa~~~ 25 (60)
.|.||||++-
T Consensus 79 VT~IGCGiAG 88 (128)
T PHA00684 79 VTRVGCGLAG 88 (128)
T ss_pred eeeecccccc
Confidence 4789999876
No 19
>KOG0792|consensus
Probab=22.62 E-value=1.1e+02 Score=25.17 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=22.4
Q ss_pred ccchHHHHHhhcCceEEEEEEe-eCCCEEEEEE-eeCC
Q psy6503 4 YLGHFTQVVWKSSSKLGVGIAR-KNGHILVVAN-YDPP 39 (60)
Q Consensus 4 ~~ghftqmvW~~t~~vGCa~~~-~~~~~~vvC~-Y~P~ 39 (60)
.|+.|=||||..-..+=-.+.. -. .-.+-|+ |+|.
T Consensus 950 T~~DFWQMVWEQ~~~lIvMlT~e~E-ggR~KchqYWPr 986 (1144)
T KOG0792|consen 950 TCTDFWQMVWEQGSTLIVMLTTEVE-GGRVKCHQYWPR 986 (1144)
T ss_pred hHHHHHHHHHhcCceEEEEEeehhh-cCeeccccccCC
Confidence 4788999999987777665554 21 2234454 6664
Done!