Query psy6503
Match_columns 60
No_of_seqs 128 out of 1041
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:46:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aiw_A Golgi-associated plant 99.9 2.1E-25 7.1E-30 136.0 6.2 54 2-55 98-154 (154)
2 1cfe_A Pathogenesis-related pr 99.8 2.7E-21 9.1E-26 115.4 6.0 46 3-48 89-135 (135)
3 1u53_A Secreted protein Asp-2; 99.8 5.7E-21 2E-25 119.1 6.7 52 3-54 130-181 (196)
4 2vzn_A Venom allergen 3; major 99.8 1.5E-20 5.3E-25 119.1 4.3 52 3-54 158-214 (218)
5 2ddb_A Pseudecin, channel bloc 99.8 9.2E-20 3.2E-24 115.7 6.5 52 3-54 102-156 (210)
6 1xta_A Natrin 1; crisp, serine 99.8 3.4E-19 1.2E-23 113.7 6.6 52 3-54 111-167 (221)
7 3q2u_A Glioma pathogenesis-rel 99.8 5.8E-19 2E-23 110.6 6.4 51 3-54 118-177 (205)
8 1qnx_A VES V 5, antigen 5; all 99.8 2.4E-19 8.2E-24 112.9 4.2 47 4-50 158-208 (209)
9 3nt8_A Ancylostoma secreted pr 99.8 8.4E-19 2.9E-23 119.0 7.1 52 3-54 354-405 (424)
10 3u3l_C Tablysin 15; CAP domain 99.8 9.2E-19 3.1E-23 111.7 5.6 51 3-54 152-207 (233)
11 3nt8_A Ancylostoma secreted pr 99.7 1.2E-17 4.1E-22 113.3 6.4 52 3-54 144-195 (424)
12 3s6s_A AC-Asp-7; pathogenesis- 99.7 1.7E-17 5.8E-22 106.1 5.6 49 4-54 102-156 (206)
13 4ifa_A Extracellular protein c 82.0 0.79 2.7E-05 30.8 2.3 21 5-25 309-329 (339)
14 4h0a_A Uncharacterized protein 22.3 52 0.0018 21.5 2.2 21 5-25 293-313 (323)
No 1
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*
Probab=99.92 E-value=2.1e-25 Score=135.99 Aligned_cols=54 Identities=41% Similarity=0.680 Sum_probs=48.9
Q ss_pred CcccchHHHHHhhcCceEEEEEEe-eCCCEEEEEEeeCCCCCCCc--ccccCCCCCc
Q psy6503 2 VIYLGHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ--YANNNLEGNL 55 (60)
Q Consensus 2 ~~~~ghftqmvW~~t~~vGCa~~~-~~~~~~vvC~Y~P~GN~~g~--~~~nV~~p~~ 55 (60)
++.+||||||||++|++||||++. .++..++||+|+|+||++|+ |.+||+||+.
T Consensus 98 ~~~~gHfTQ~VW~~t~~vGCg~a~c~~~~~~vVC~Y~P~GN~~g~~~y~~NV~pPkk 154 (154)
T 4aiw_A 98 TSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPPKK 154 (154)
T ss_dssp CTTTHHHHHHHCTTCCEEEEEEEECTTSCEEEEEEEESCCCCCSTTHHHHHSCCCCC
T ss_pred CCCcCCeeeeehhhhceeeeEEEEcCCCCEEEEEEEeCCCccCCccchHHhCCCCCC
Confidence 467999999999999999999999 45689999999999999876 8999999974
No 2
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1
Probab=99.84 E-value=2.7e-21 Score=115.41 Aligned_cols=46 Identities=48% Similarity=0.802 Sum_probs=42.2
Q ss_pred cccchHHHHHhhcCceEEEEEEee-CCCEEEEEEeeCCCCCCCcccc
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-NGHILVVANYDPPGNYQGQYAN 48 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~~~~~vvC~Y~P~GN~~g~~~~ 48 (60)
+.+||||||||++|++||||++.+ ++.+++||+|+|+||+.|+++|
T Consensus 89 ~~~gHfTQ~vW~~t~~vGCa~~~c~~~~~~~VC~Y~p~GN~~g~~pY 135 (135)
T 1cfe_A 89 KKCRHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQRPY 135 (135)
T ss_dssp SCCSSHHHHHCTTCCEEEEEEEECTTSSEEEEEECSSCCSCTTSCCC
T ss_pred CcccceeeeEEccCcEEeEEEEEeCCCCEEEEEEEeCCCCCCCCCCC
Confidence 468999999999999999999995 4689999999999999999876
No 3
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Probab=99.83 E-value=5.7e-21 Score=119.11 Aligned_cols=52 Identities=33% Similarity=0.524 Sum_probs=48.1
Q ss_pred cccchHHHHHhhcCceEEEEEEeeCCCEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~~~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++.+...+++||+|+|.||+.|+++|++++|-
T Consensus 130 ~~~ghfTQ~VW~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~pc 181 (196)
T 1u53_A 130 RGVGHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGKDIYEKGEPC 181 (196)
T ss_dssp TTCHHHHHHTCTTCCEEEEEEEECSSCEEEEEEEESCCCCTTSBSSCBSSTT
T ss_pred ccccchheeeecccCEEeeEEEEeCCCEEEEEEeCCCCCCCCCcCCccCCCC
Confidence 5799999999999999999999965589999999999999999999999873
No 4
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}
Probab=99.81 E-value=1.5e-20 Score=119.14 Aligned_cols=52 Identities=33% Similarity=0.619 Sum_probs=45.9
Q ss_pred cccchHHHHHhhcCceEEEEEEe-eC-C---CEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIAR-KN-G---HILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~-~~-~---~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++. .+ + ..++||+|+|+||+.|+++|+|+...
T Consensus 158 ~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~Y~P~GN~~g~~~y~~~~~~ 214 (218)
T 2vzn_A 158 MKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIYEIKKHH 214 (218)
T ss_dssp HHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEEEESCCCCTTSCSSCBCCCC
T ss_pred CCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEEECCCCCCCCCcccccCccc
Confidence 35899999999999999999998 43 2 46999999999999999999998753
No 5
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Probab=99.80 E-value=9.2e-20 Score=115.67 Aligned_cols=52 Identities=33% Similarity=0.543 Sum_probs=47.3
Q ss_pred cccchHHHHHhhcCceEEEEEEe-eCCCEEEEEEeeCCCCCCCc--ccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ--YANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~-~~~~~~vvC~Y~P~GN~~g~--~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++. .++.+++||+|+|.||+.|+ .+|+.++|-
T Consensus 102 ~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~VC~Y~P~GN~~g~~~~pY~~G~pc 156 (210)
T 2ddb_A 102 SVIGHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIATPYKSGPPC 156 (210)
T ss_dssp SCCHHHHHHTCTTCCEEEEEEEEEETTEEEEEEEEESCSSSTTCTTCSSCBSSTT
T ss_pred CcccchhhhhhhhccEeeEEEEEcCCCCEEEEEEeeCCCCCCCCccCCCCcCcCc
Confidence 56999999999999999999999 45578999999999999999 899999773
No 6
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A
Probab=99.78 E-value=3.4e-19 Score=113.74 Aligned_cols=52 Identities=27% Similarity=0.492 Sum_probs=46.8
Q ss_pred cccchHHHHHhhcCceEEEEEEee-CC--CEEEEEEeeCCCCCCCc--ccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARK-NG--HILVVANYDPPGNYQGQ--YANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~-~~--~~~vvC~Y~P~GN~~g~--~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++.+ ++ .+++||+|+|.||+.|+ .+|+.++|-
T Consensus 111 ~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY~~G~pc 167 (221)
T 1xta_A 111 SVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPYKLGPPC 167 (221)
T ss_dssp CCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSSCBSSTT
T ss_pred CchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCcccCCcc
Confidence 569999999999999999999994 33 78999999999999999 899998773
No 7
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A
Probab=99.77 E-value=5.8e-19 Score=110.61 Aligned_cols=51 Identities=31% Similarity=0.516 Sum_probs=44.8
Q ss_pred cccchHHHHHhhcCceEEEEEEeeC---------CCEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKN---------GHILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~---------~~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++.+. ...++||+|.|.||+ ++.+|+.++|-
T Consensus 118 ~~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN~-~~~pY~~G~pc 177 (205)
T 3q2u_A 118 KVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATC 177 (205)
T ss_dssp SCCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCCC-SSCSSCBSSTT
T ss_pred chhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCCc-CCCCCCcCccc
Confidence 5699999999999999999999842 257899999999999 88899998764
No 8
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1
Probab=99.76 E-value=2.4e-19 Score=112.93 Aligned_cols=47 Identities=30% Similarity=0.665 Sum_probs=42.0
Q ss_pred ccchHHHHHhhcCceEEEEEEe-eCC---CEEEEEEeeCCCCCCCcccccC
Q psy6503 4 YLGHFTQVVWKSSSKLGVGIAR-KNG---HILVVANYDPPGNYQGQYANNN 50 (60)
Q Consensus 4 ~~ghftqmvW~~t~~vGCa~~~-~~~---~~~vvC~Y~P~GN~~g~~~~nV 50 (60)
.+||||||||++|++||||++. .++ ..++||+|+|.||+.|+.+|++
T Consensus 158 ~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~GN~~g~~~Y~~ 208 (209)
T 1qnx_A 158 KTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELYQT 208 (209)
T ss_dssp HHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCCCTTSCSSCB
T ss_pred cccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCCCCCCCCCCee
Confidence 5899999999999999999998 333 4689999999999999999875
No 9
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=99.76 E-value=8.4e-19 Score=118.98 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=47.8
Q ss_pred cccchHHHHHhhcCceEEEEEEeeCCCEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~~~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
+.+||||||||++|++||||++.+.+..++||+|+|+||+.|+++|+.++|-
T Consensus 354 ~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~pc 405 (424)
T 3nt8_A 354 MQIGHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGHVIYTMGQPC 405 (424)
T ss_dssp CCCHHHHHHHCTTCCEEEEEEEECSSSEEEEEEEESCCCCTTSBSSCBSSTT
T ss_pred CcccchHHHhhhhcceeeeEEEEeCCCeEEEEEecCCCCcCCCCCCCCCccc
Confidence 4799999999999999999999965568999999999999999999999874
No 10
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*
Probab=99.75 E-value=9.2e-19 Score=111.72 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=45.1
Q ss_pred cccchHHHHHhhcCceEEEEEEe-eCC---CEEEEEEeeCCCCCCCcccccCC-CCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIAR-KNG---HILVVANYDPPGNYQGQYANNNL-EGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~-~~~---~~~vvC~Y~P~GN~~g~~~~nV~-~p~ 54 (60)
+.+||||||||++|++||||++. .++ .+++||+|+| ||+.|+.+|+.+ +|-
T Consensus 152 ~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-GN~~g~~~Y~~G~~pc 207 (233)
T 3u3l_C 152 GDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRGRPVYKIGNSPG 207 (233)
T ss_dssp CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-CCCTTSCSSCBCSSTT
T ss_pred cchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-CCCCCCceeeCCCCcc
Confidence 57999999999999999999999 333 5799999998 999999999998 653
No 11
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=99.71 E-value=1.2e-17 Score=113.29 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=47.9
Q ss_pred cccchHHHHHhhcCceEEEEEEeeCCCEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 3 IYLGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 3 ~~~ghftqmvW~~t~~vGCa~~~~~~~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
..+||||||||++|++||||++.+...+++||+|+|.||+.|+.+|+.++|-
T Consensus 144 ~~~ghfTqmvw~~t~~vGCa~~~c~~~~~~VC~Y~p~GN~~g~~~Y~~G~~c 195 (424)
T 3nt8_A 144 GGLFAFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQPMWETGQAC 195 (424)
T ss_dssp TTCHHHHHHHCTTCCEEEEEEEEETTEEEEEEEESSCCCSTTCBSSEESCCB
T ss_pred cchHHHHHHHHHhcCeeceEEEEeCCcEEEEEEECCCCCcccccccccCCCC
Confidence 4689999999999999999999965588999999999999999999999875
No 12
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Probab=99.70 E-value=1.7e-17 Score=106.13 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=43.6
Q ss_pred ccchHHHHHhhcCceEEEEEEeeC-----C-CEEEEEEeeCCCCCCCcccccCCCCC
Q psy6503 4 YLGHFTQVVWKSSSKLGVGIARKN-----G-HILVVANYDPPGNYQGQYANNNLEGN 54 (60)
Q Consensus 4 ~~ghftqmvW~~t~~vGCa~~~~~-----~-~~~vvC~Y~P~GN~~g~~~~nV~~p~ 54 (60)
.+||||||||++|++||||++.+. + .+++||+|+|.| .|+.+|+.++|=
T Consensus 102 ~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~~~Y~~G~pC 156 (206)
T 3s6s_A 102 DKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDGESFEGGKPC 156 (206)
T ss_dssp CHHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTTCCCCCSCCC
T ss_pred hhhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCCCCcccCCCC
Confidence 579999999999999999999952 3 579999999988 999999999884
No 13
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=81.98 E-value=0.79 Score=30.76 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.1
Q ss_pred cchHHHHHhhcCceEEEEEEe
Q psy6503 5 LGHFTQVVWKSSSKLGVGIAR 25 (60)
Q Consensus 5 ~ghftqmvW~~t~~vGCa~~~ 25 (60)
.||..+|++.+.+++|+|+..
T Consensus 309 pGHr~NIL~~~~t~iGvGv~~ 329 (339)
T 4ifa_A 309 EGHRKNLLNEQFTGLGVGVYD 329 (339)
T ss_dssp HHHHHHHTCTTCCEEEEEEET
T ss_pred HhHHHHHhCCCCCEEEEEEEe
Confidence 589999999999999999864
No 14
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=22.27 E-value=52 Score=21.54 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=18.5
Q ss_pred cchHHHHHhhcCceEEEEEEe
Q psy6503 5 LGHFTQVVWKSSSKLGVGIAR 25 (60)
Q Consensus 5 ~ghftqmvW~~t~~vGCa~~~ 25 (60)
-||-.+|+..+-+++|+|+..
T Consensus 293 pgHR~NiL~~~~t~iGvGv~~ 313 (323)
T 4h0a_A 293 DIHRSRLLNSKYDEMGGDVMR 313 (323)
T ss_dssp HHHHHHHTCSSCCEEEEEEET
T ss_pred HHHHHHHcCCCCCEEEEEEEc
Confidence 389999999999999999854
Done!