RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6503
(60 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 70.8 bits (174), Expect = 7e-18
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANN 49
GHFT +VWK++ K+GVG A +G VVA Y P GN +G + N
Sbjct: 102 GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEEN 148
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 69.6 bits (171), Expect = 1e-17
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQ 45
H+TQVVW++S +LG G AR NG + NYDP GN+ GQ
Sbjct: 92 RHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQ 132
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 64.4 bits (157), Expect = 3e-15
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQ 45
GH+TQ+VW+ + KLG + + VV Y P GN G+
Sbjct: 133 GHYTQMVWQETVKLGCYVEACSNMCYVVCQYGPAGNMMGK 172
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 61.5 bits (149), Expect = 6e-14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQYANNNLEG 53
GH+TQVVW S +G A+ + L V Y P GN +G A G
Sbjct: 105 GHYTQVVWYKSHLIGCASAKCSSSKYLYVCQYCPAGNIRGSIATPYKSG 153
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 61.1 bits (148), Expect = 1e-13
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 6 GHFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQYA 47
GH+TQ+VW + + G ++ V Y P GN+QG+ A
Sbjct: 114 GHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTA 158
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 61.7 bits (149), Expect = 2e-13
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQY 46
GH+TQ+ W ++ KLG + N V Y P GNY G
Sbjct: 357 GHYTQMAWDTTYKLGCAVVFCNDFTFGVCQYGPGGNYMGHV 397
Score = 55.9 bits (134), Expect = 2e-11
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 5 LGHFTQVVWKSSSKLGVGIARKNGHILVVANYDPPGNYQGQYANNNLEGNLMETW 59
L F+ +V+ ++KLG + V Y+ G Q +
Sbjct: 146 LFAFSNMVYSETTKLGCAYKVCGTKLAVSCIYNGVGYITNQPMWETGQACQTGAD 200
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 59.8 bits (145), Expect = 3e-13
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 6 GHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQGQ 45
GH+TQ+VW ++ ++G G + K +V NY P GN++ +
Sbjct: 160 GHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNE 203
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 58.4 bits (141), Expect = 1e-12
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 6 GHFTQVVWKSSSKLGVGIAR-----KNGHILVVANYDPPGNYQGQY 46
GH+TQ+VW ++K+G G +V NY P GN G
Sbjct: 161 GHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAP 206
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 56.8 bits (137), Expect = 4e-12
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 6 GHFTQVVWKSSSKLGVGIAR---------KNGHILVVANYDPPGNYQGQ 45
GH+TQVVW S K+G + + + NY P GNY
Sbjct: 121 GHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTW 169
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 39.3 bits (91), Expect = 1e-05
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 6 GHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQGQ 45
+ + +G G+ L+ N+ N +G+
Sbjct: 155 KELALAISDRVTAVGCGLTTWEDGAKARALLTCNFS-SQNTRGR 197
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 37.0 bits (85), Expect = 7e-05
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 6/47 (12%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNG------HILVVANYDPPGNYQGQY 46
QVV+ +++ G + + V YD +
Sbjct: 104 NSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPKDGESF 150
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 6e-04
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 23 IARKNGHILVVANYDPPGNYQGQYA 47
+ ++ G ++ + NY+ QY
Sbjct: 1833 VGKRTGWLVEIVNYNVEN---QQYV 1854
>1kxg_A B lymphocyte stimulator; BAFF, TALL-1, thank, ZTNF4, cytokine,
TNF superfamily, jellyroll, beta-sandwich; HET: CIT;
2.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 1kd7_A 1otz_A
1oqe_A 1jh5_A 1oqd_A
Length = 152
Score = 26.1 bits (57), Expect = 0.54
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNGHILV 32
G +T V W S K G + K ILV
Sbjct: 28 GSYTFVPWLLSFKRGSALEEKENKILV 54
>1osg_A Tumor necrosis factor ligand superfamily member 13B; jelly-roll,
beta hairpin, protein-peptide complex, immune system;
3.00A {Homo sapiens} SCOP: b.22.1.1 PDB: 3v56_A
Length = 208
Score = 25.5 bits (55), Expect = 1.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNGHILV 32
G +T V W S K G + K ILV
Sbjct: 84 GSYTFVPWLLSFKRGSALEEKENKILV 110
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 25.0 bits (54), Expect = 1.8
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 22 GIARKNGHILVVANYDPPGNYQGQYA 47
IA G +L + NY+ QY
Sbjct: 1888 NIAEVTGWLLEIVNYNVAN---MQYV 1910
>1u5x_A Tumor necrosis factor ligand superfamily member 1; TNFSF,
cytokine, jelly-roll, trimer, hormone-growth factor C;
1.80A {Mus musculus} SCOP: b.22.1.1 PDB: 1u5y_A 1u5z_A
3k48_A 1xu1_A 1xu2_A
Length = 140
Score = 24.5 bits (53), Expect = 2.2
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 6 GHFTQVVWKSSSKLGVGIARKNGHILV 32
T+V+W+ + G G+ + + V
Sbjct: 21 SDVTEVMWQPVLRRGRGLEAQGDIVRV 47
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 22.9 bits (50), Expect = 9.2
Identities = 2/18 (11%), Positives = 6/18 (33%)
Query: 21 VGIARKNGHILVVANYDP 38
+ ++ + V Y
Sbjct: 235 LLHLHRHLPVHVFMVYSE 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.424
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 945,265
Number of extensions: 40495
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 18
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)