RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6503
         (60 letters)



>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket
           (Vespula vulgaris), Ves v 5 [TaxId: 7454]}
          Length = 209

 Score = 51.1 bits (121), Expect = 2e-10
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6   GHFTQVVWKSSSKLGVGIAR----KNGHILVVANYDPPGNYQGQY 46
           GH+TQ+VW ++ ++G G  +    K     +V NY P GN++ + 
Sbjct: 160 GHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEE 204


>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato
           (Lycopersicon esculentum), P14a [TaxId: 4081]}
          Length = 135

 Score = 47.9 bits (113), Expect = 1e-09
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 7   HFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNYQGQY 46
           H+TQVVW++S +LG G AR  NG   +  NYDP GN+ GQ 
Sbjct: 93  HYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWIGQR 133


>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein
           (SteCRISP) {Chinese green tree viper (Trimeresurus
           stejnegeri) [TaxId: 39682]}
          Length = 164

 Score = 46.4 bits (109), Expect = 8e-09
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 7   HFTQVVWKSSSKLGVGIAR---KNGHILVVANYDPPGNYQGQYANNNLEG 53
           H+TQ+VW  S ++G   A           V  Y P GN+ G+ A     G
Sbjct: 115 HYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPYTSG 164


>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 42.6 bits (99), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 6   GHFTQVVWKSSSKLGVGIAR-KNGHILVVANYDPPGNY--QGQYANN 49
           GHFT +VWK++ K+GVG A   +G   VVA Y P GN   +G +  N
Sbjct: 99  GHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEEN 145


>d2d0ob1 c.51.3.2 (B:5-112) Diol dehydratase-reactivating factor
          small subunit DdrB {Klebsiella oxytoca [TaxId: 571]}
          Length = 108

 Score = 23.2 bits (50), Expect = 2.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 16 SSKLGVGIARKNGHILV 32
          SS L VGIA     ++V
Sbjct: 52 SSPLLVGIACDRHMLVV 68


>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth
          (Mamestra brassicae) [TaxId: 55057]}
          Length = 101

 Score = 23.1 bits (50), Expect = 2.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 32 VVANYDPPGNYQGQYAN 48
          + A YDP GN++ +Y +
Sbjct: 82 LTAKYDPTGNWRKKYED 98


>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
          regulatory (C-terminal) domain {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 78

 Score = 22.5 bits (48), Expect = 3.2
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 28 GHILVVANYDPPG 40
          G  L++   D PG
Sbjct: 3  GINLIIHYVDRPG 15


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,172
Number of extensions: 7726
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 7
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)