Query psy651
Match_columns 412
No_of_seqs 131 out of 352
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:55:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j6e_L IGM, FAB light chain; a 8.5 1.9E+02 0.0065 24.5 2.7 31 27-57 23-57 (234)
2 1wv8_A TT1413, hypothetical pr 8.0 2.1E+02 0.0073 21.8 2.4 15 161-175 7-21 (73)
3 3sob_L Antibody light chain; b 6.8 1.4E+02 0.0047 25.4 0.9 57 1-57 1-60 (237)
4 3tow_A Multivesicular BODY sub 5.2 2.5E+02 0.0084 24.4 1.5 11 365-375 127-137 (152)
5 2fhz_A Colicin-E5 immunity pro 5.1 78 0.0027 26.0 -1.6 27 155-184 40-66 (109)
6 3m95_A Autophagy related prote 4.7 3E+02 0.01 23.1 1.7 34 110-147 88-121 (125)
7 2rkl_A Vacuolar protein sortin 4.7 61 0.0021 23.5 -2.3 14 331-344 17-30 (53)
8 3bx4_B Aggretin beta chain; to 4.3 1.8E+02 0.0062 23.4 0.0 16 75-92 34-49 (146)
9 2hg6_A Hypothetical protein; s 4.3 4.2E+02 0.015 21.8 2.2 71 157-234 36-123 (128)
10 3sob_H Antibody heavy chain, l 4.2 1.9E+02 0.0065 25.5 0.1 31 27-57 27-61 (256)
No 1
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=8.53 E-value=1.9e+02 Score=24.50 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=19.0
Q ss_pred CCCCCccccccccCccccccCCCC--C--eeeEEE
Q psy651 27 LTTPGTPYVNKEPNTLIQCVDENN--N--PVDWII 57 (412)
Q Consensus 27 ~~~~~~~~~~~~~~~~isC~~~~g--~--~VDW~i 57 (412)
+.+|..-.|...-...+.|.-... . .|-|+.
T Consensus 23 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k 57 (234)
T 2j6e_L 23 LTQPPSASGTPGQRVTISCSGSSSNIGSNYVYWYQ 57 (234)
T ss_dssp CBCCSCCCBCTTCEEEEEEECCTTTTTTSCCEEEE
T ss_pred EeCCCcEEeeCCCcEEEEEEecCCCCCCCeEEEEE
Confidence 445655555666666899985432 2 488863
No 2
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=8.04 E-value=2.1e+02 Score=21.84 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=12.7
Q ss_pred EEEecCCCceEEEec
Q psy651 161 LVVGNSRGGIWIVHS 175 (412)
Q Consensus 161 vl~~d~~~GfwlvHS 175 (412)
.+.||.+.|+|+-+|
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 467899999999987
No 3
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=6.83 E-value=1.4e+02 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCceehhHHHHHHHHhhhcCCcCCCCCCC-CCccccccccCccccccCCC--CCeeeEEE
Q psy651 1 MNKLISIFSLLVLVEAVTSGIPLTKPLTT-PGTPYVNKEPNTLIQCVDEN--NNPVDWII 57 (412)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~isC~~~~--g~~VDW~i 57 (412)
|.+.+.++.+++++.....|....-.+.+ |..-.|...-...+.|.-.. ...|-|+.
T Consensus 1 M~~~~~~ll~~~~l~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k 60 (237)
T 3sob_L 1 MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQ 60 (237)
T ss_dssp -----------------------CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEE
T ss_pred CCcchhHHHHHHHHHHhhcccCccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEE
Confidence 44433333333333333343332222333 44344445555689997543 34688864
No 4
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=5.20 E-value=2.5e+02 Score=24.44 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=9.7
Q ss_pred CCCeEEEccCC
Q psy651 365 ARHFVCNGDIN 375 (412)
Q Consensus 365 ~~~~vCiGDiN 375 (412)
+..|.|+||||
T Consensus 127 ~~~yt~~Gein 137 (152)
T 3tow_A 127 PPQYTFIGELN 137 (152)
T ss_dssp CTTEEEEEEET
T ss_pred CCCceEEEEeC
Confidence 46899999998
No 5
>2fhz_A Colicin-E5 immunity protein; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.311.1.1 PDB: 2dfx_I
Probab=5.10 E-value=78 Score=26.00 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=22.1
Q ss_pred ccceeeEEEecCCCceEEEeccCCCCCCCC
Q psy651 155 FGHSKGLVVGNSRGGIWIVHSVPHFVDDSQ 184 (412)
Q Consensus 155 ~gHsKGvl~~d~~~GfwlvHSvP~FP~~~~ 184 (412)
.+.-||+.++.-++|+|.. |+|=+...
T Consensus 40 eAtkr~l~I~rIEGGiW~~---pGFear~d 66 (109)
T 2fhz_A 40 EAAKKGLWILGIDGGHWLN---PGFRIDSS 66 (109)
T ss_dssp HHHHHTCCEEEEEEEEECS---SCEEECGG
T ss_pred HHHhcCceEEEEecceecC---CCcccccc
Confidence 4666899999999999965 99987754
No 6
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=4.72 E-value=3e+02 Score=23.08 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=23.0
Q ss_pred ccCCCchHHHhhHHhhhcCCCCCCCCCCeEEEEEcCCC
Q psy651 110 LNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQT 147 (412)
Q Consensus 110 in~~~s~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 147 (412)
+|+..-+...|+.++|....+ .....||.|.+|.
T Consensus 88 Vnn~lPs~s~~m~~lY~~~kd----eDGfLY~~Ys~e~ 121 (125)
T 3m95_A 88 VNNVIPPTSATMGSLYQEHHD----EDFFLYIAFSDEN 121 (125)
T ss_dssp BTTBCCCTTSBHHHHHHHHCC----TTSCEEEEEESSS
T ss_pred ECCccCCccchHHHHHHHcCC----CCCeEEEEecCcc
Confidence 343333566789999987543 1348999999986
No 7
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=4.69 E-value=61 Score=23.46 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=9.8
Q ss_pred ccCCCCeeeeEeec
Q psy651 331 FRSTHDHAKWTISF 344 (412)
Q Consensus 331 f~~~~DHSKWaVs~ 344 (412)
+...+-|+|||||-
T Consensus 17 i~~AqK~aK~AiSA 30 (53)
T 2rkl_A 17 IEQIQKLAKYAISA 30 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34456688998884
No 8
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB: 2vrp_B
Probab=4.28 E-value=1.8e+02 Score=23.36 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=9.4
Q ss_pred CeEEEEEecCCcchhhcc
Q psy651 75 GEAYMYVSSEDVKRFEEG 92 (412)
Q Consensus 75 G~~y~Y~Ds~~~~~w~~~ 92 (412)
|..|.+.+.. ..|...
T Consensus 34 ~~CY~~~~~~--~~w~~A 49 (146)
T 3bx4_B 34 GHCYKPFNEP--KNWADA 49 (146)
T ss_dssp TEEEEEEEEE--ECHHHH
T ss_pred CEEEEEECCC--cCHHHH
Confidence 5677777543 356544
No 9
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Probab=4.28 E-value=4.2e+02 Score=21.79 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=38.8
Q ss_pred ceeeEEEecCCCceEEEe-ccCCCCCCCCC-------Cccc-CCCCcccccEEEEEeeCcccHHHHHHH-----Hhcccc
Q psy651 157 HSKGLVVGNSRGGIWIVH-SVPHFVDDSQT-------SYTY-PHTGLMYGQNFLCLSLNASQLDSVGDN-----LGHNQI 222 (412)
Q Consensus 157 HsKGvl~~d~~~GfwlvH-SvP~FP~~~~~-------~y~~-P~~~~~~GQ~FlC~S~~~~~l~~Ia~~-----L~~~~p 222 (412)
.-||+|.|+...|-+|+- |--.|--.-.+ +|.| |..+ |. |++..+.|..+.+| |.+.+|
T Consensus 36 qLkGFVGfn~KtG~yIvRFSEDsFGmDVadd~I~P~sEfVW~~~~~----~~---M~L~Rerl~lLl~q~iDdRlni~EP 108 (128)
T 2hg6_A 36 ALKGFVGFNRKTGRYIVRFSEDSFGMDVADDSITPTSEFVWSSVRD----DV---MRLGREQLQILLEQNINERLNIGEP 108 (128)
T ss_dssp SCCCEEEEETTTTEEEEESCGGGCSSSSCGGGCEEHHHHTEEESSS----SE---EEECTTHHHHHHHHTCHHHHTCCHH
T ss_pred HhcccccccccCceEEEEecccccCCcccccccccchheEEecCcc----hh---hHHHHHHHHHHHHccchhhccccch
Confidence 458999999999999884 33444332221 2555 3222 22 45556666665543 444455
Q ss_pred e-eecc--cCCCCcc
Q psy651 223 Y-KYST--FLSAGNK 234 (412)
Q Consensus 223 ~-vY~~--~~P~~~~ 234 (412)
. ||-. .+|+..+
T Consensus 109 LrvYlrR~dlPEI~A 123 (128)
T 2hg6_A 109 LLVYLRRQDLPEITA 123 (128)
T ss_dssp HHHHTTCCSSSSCEE
T ss_pred HHHHHhhccchhhhh
Confidence 4 3433 3565433
No 10
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=4.21 E-value=1.9e+02 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=17.3
Q ss_pred CCCCCccccccccCccccccCC----CCCeeeEEE
Q psy651 27 LTTPGTPYVNKEPNTLIQCVDE----NNNPVDWII 57 (412)
Q Consensus 27 ~~~~~~~~~~~~~~~~isC~~~----~g~~VDW~i 57 (412)
+.+|..-.|...-...+.|.-. ....|-|+.
T Consensus 27 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r 61 (256)
T 3sob_H 27 LVESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVR 61 (256)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred EEecCcEEEcCCCCEEEEEEeeccccCCCEEEEEE
Confidence 3444433444445568999742 235688864
Done!