Query psy651
Match_columns 412
No_of_seqs 131 out of 352
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 19:55:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy651.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/651hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wv8a1 d.304.1.1 (A:2-72) Hyp 18.2 27 0.0019 24.9 1.9 19 162-180 7-27 (71)
2 d1twfc2 d.181.1.1 (C:42-172) R 7.4 47 0.0034 25.6 0.3 12 330-341 119-130 (131)
3 d1l6za2 b.1.1.4 (A:108-203) Bi 6.8 1.4E+02 0.01 20.4 2.8 35 23-57 3-38 (96)
4 d1pg7x1 b.1.1.1 (X:1-113) Immu 6.6 1.6E+02 0.011 22.5 3.1 46 27-84 4-54 (120)
5 d2hg6a1 d.364.1.1 (A:1-106) Hy 5.9 1.4E+02 0.0099 22.2 2.2 24 157-180 14-38 (106)
6 d1b24a1 d.95.2.1 (A:7-99) DNA 5.8 1.8E+02 0.013 20.9 2.8 20 388-407 74-93 (93)
7 d2cuqa2 g.39.1.3 (A:8-42) Four 5.5 64 0.0047 19.8 0.1 12 139-150 21-32 (35)
8 d1ugna1 b.1.1.4 (A:2-97) Ligan 5.2 1.2E+02 0.0085 21.7 1.4 26 34-61 14-39 (96)
9 d1pn0a3 d.16.1.2 (A:241-341) P 5.0 1.2E+02 0.0086 22.6 1.4 11 51-61 88-98 (101)
10 d1eo6a_ d.15.1.3 (A:) Golgi-as 4.7 1.4E+02 0.01 22.6 1.7 28 116-147 86-113 (116)
No 1
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=18.18 E-value=27 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.751 Sum_probs=15.1
Q ss_pred EEecCCCceEEEec--cCCCC
Q psy651 162 VVGNSRGGIWIVHS--VPHFV 180 (412)
Q Consensus 162 l~~d~~~GfwlvHS--vP~FP 180 (412)
.+||++.|+|+-|| +|+--
T Consensus 7 a~WD~EAgVWva~s~dipGLv 27 (71)
T d1wv8a1 7 ALWDGEAGVWVAESDDVPGLA 27 (71)
T ss_dssp EEEETTTTEEEEECSSSTTCC
T ss_pred EEEcccCCEEEEEcCCCCcce
Confidence 47999999999999 45433
No 2
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.41 E-value=47 Score=25.64 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.3
Q ss_pred cccCCCCeeeeE
Q psy651 330 EFRSTHDHAKWT 341 (412)
Q Consensus 330 ~f~~~~DHSKWa 341 (412)
.-...+|||||.
T Consensus 119 ~kG~Gk~HAK~s 130 (131)
T d1twfc2 119 KKGIAKEHAKWG 130 (131)
T ss_dssp EEECTTTCGGGC
T ss_pred EecccccCcEeC
Confidence 345699999994
No 3
>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.80 E-value=1.4e+02 Score=20.42 Aligned_cols=35 Identities=14% Similarity=0.469 Sum_probs=20.5
Q ss_pred CCCCCCCCCccccccccCccccccCCCC-CeeeEEE
Q psy651 23 LTKPLTTPGTPYVNKEPNTLIQCVDENN-NPVDWII 57 (412)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~isC~~~~g-~~VDW~i 57 (412)
.++|.=++...-|.+.....+.|.-... ..|-||.
T Consensus 3 v~~P~i~~~~~~v~~g~~v~l~C~~~~~~~~v~W~~ 38 (96)
T d1l6za2 3 VTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLF 38 (96)
T ss_dssp CCCCCEECSCSEECTTSCEEEEECCCCSSCEEEEEE
T ss_pred CCCCeEEcCceEEeCCCeEEEEEccCCCCCCEEEEE
Confidence 3444334444445556667899986432 4677875
No 4
>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}
Probab=6.55 E-value=1.6e+02 Score=22.52 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=27.1
Q ss_pred CCCCCccccccccCccccccC----CCCCeeeEEEEEecCCCCCCCCccccCCeEEE-EEecC
Q psy651 27 LTTPGTPYVNKEPNTLIQCVD----ENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYM-YVSSE 84 (412)
Q Consensus 27 ~~~~~~~~~~~~~~~~isC~~----~~g~~VDW~i~yKLP~~~~~~~~~~~~G~~y~-Y~Ds~ 84 (412)
|.|+|...|.-...-+|+|+- -.+..+.|+-. .|+ .|+++| |+...
T Consensus 4 L~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ--~PG----------k~lewl~~i~~~ 54 (120)
T d1pg7x1 4 LQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQ--SHG----------KNLEWIGLVHPH 54 (120)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE--CTT----------SCEEEEEEEETT
T ss_pred EeeECCcEECCCCCEEEEEEEccccCCCCCcceeee--cCC----------CceEEeeecCcc
Confidence 456666665544445899973 23345566543 665 578887 66543
No 5
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.90 E-value=1.4e+02 Score=22.17 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=18.0
Q ss_pred ceeeEEEecCCCceEEEe-ccCCCC
Q psy651 157 HSKGLVVGNSRGGIWIVH-SVPHFV 180 (412)
Q Consensus 157 HsKGvl~~d~~~GfwlvH-SvP~FP 180 (412)
.-||++.|+...|-||+. |--.|-
T Consensus 14 qL~GFVGfn~K~G~~ivRFSEDsFG 38 (106)
T d2hg6a1 14 ALKGFVGFNRKTGRYIVRFSEDSFG 38 (106)
T ss_dssp SCCCEEEEETTTTEEEEESCGGGCS
T ss_pred HhcccccccccCceEEEEecccccC
Confidence 458999999999999884 333443
No 6
>d1b24a1 d.95.2.1 (A:7-99) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=5.83 E-value=1.8e+02 Score=20.89 Aligned_cols=20 Identities=5% Similarity=0.413 Sum_probs=16.2
Q ss_pred EEeeCHHHHHHHHHHhhccc
Q psy651 388 VCIDNEALWSLYHSIISAVE 407 (412)
Q Consensus 388 vCi~n~~l~~~f~~~v~~~e 407 (412)
+-..++.||+.|+++.++.+
T Consensus 74 vRVSSK~L~~~Fnn~L~~l~ 93 (93)
T d1b24a1 74 LRVSSKKLYYYFANMLERIR 93 (93)
T ss_dssp EEEECHHHHHHHHHHTTSGG
T ss_pred EEeeHHHHHHHHHHHHhhcC
Confidence 45678999999999987754
No 7
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=64 Score=19.78 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=9.3
Q ss_pred EEEEEcCCCCCC
Q psy651 139 VKILYNDQTPIR 150 (412)
Q Consensus 139 ~~i~YNDqpp~~ 150 (412)
+=|.|.|||+++
T Consensus 21 GGvtY~dqpWHk 32 (35)
T d2cuqa2 21 GGVTYRDQPWHR 32 (35)
T ss_dssp CCEESSSSEECT
T ss_pred CceeecCCcchh
Confidence 567889998865
No 8
>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.18 E-value=1.2e+02 Score=21.69 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=18.3
Q ss_pred ccccccCccccccCCCCCeeeEEEEEec
Q psy651 34 YVNKEPNTLIQCVDENNNPVDWIIFYKL 61 (412)
Q Consensus 34 ~~~~~~~~~isC~~~~g~~VDW~i~yKL 61 (412)
.|-..-+-++.|.... ..+||++||-
T Consensus 14 ~V~~G~~VTL~C~~~~--~~~~f~L~ke 39 (96)
T d1ugna1 14 VITQGSPVTLRCQGGQ--ETQEYRLYRE 39 (96)
T ss_dssp EEETTCCEEEEEECCT--TCCCEEEEES
T ss_pred ccCCCCcEEEEEeCCC--CCCEEEEEEC
Confidence 3444445689999764 5689999995
No 9
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=5.02 E-value=1.2e+02 Score=22.63 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=9.4
Q ss_pred CeeeEEEEEec
Q psy651 51 NPVDWIIFYKL 61 (412)
Q Consensus 51 ~~VDW~i~yKL 61 (412)
+.|+||-+|..
T Consensus 88 ~~v~WwS~Y~I 98 (101)
T d1pn0a3 88 QQLDWFTAYHI 98 (101)
T ss_dssp EEEEEEEEEEE
T ss_pred eEEeEEeeeEe
Confidence 57999999975
No 10
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.66 E-value=1.4e+02 Score=22.63 Aligned_cols=28 Identities=4% Similarity=0.046 Sum_probs=19.9
Q ss_pred hHHHhhHHhhhcCCCCCCCCCCeEEEEEcCCC
Q psy651 116 KKGKILSPYLFNASYAPEFSADGVKILYNDQT 147 (412)
Q Consensus 116 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 147 (412)
+...||.++|....+. ....||.|++|-
T Consensus 86 ~~s~~i~~lY~~~Kde----DGfLYi~Ys~en 113 (116)
T d1eo6a_ 86 QSSLTMGQLYEKEKDE----DGFLYVAYSGEN 113 (116)
T ss_dssp CTTSBHHHHHHHHCCT----TSCEEEEEECCC
T ss_pred chhhhHHHHHHHcCCC----CcEEEEEEeccc
Confidence 4456888888775331 458999999874
Done!