RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy651
(412 letters)
>gnl|CDD|217464 pfam03265, DNase_II, Deoxyribonuclease II.
Length = 324
Score = 232 bits (595), Expect = 8e-74
Identities = 116/372 (31%), Positives = 177/372 (47%), Gaps = 53/372 (14%)
Query: 43 IQCVDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKK--KATEHK 100
I C ++ VDW YKLP++ SS G Y+Y+ S + ++ TE
Sbjct: 1 ISCKNDAGKDVDWFFVYKLPKLKSST----TTGLGYLYLDSNNTT-WKLSAYNINDTESA 55
Query: 101 LNKRNKHEKLNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQTPIRTTV-KFGHSK 159
L G+ L+ +++ + +LYNDQ P + GH+K
Sbjct: 56 L----------------GRTLAQLYPSSN-----KNNTAYLLYNDQPPNSSYSSDRGHTK 94
Query: 160 GLVVGNSRGGIWIVHSVPHF-VDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLG 218
G+++ + G W+VHSVP F S +Y+YP +G YGQ+FLC+SL+ QL+++ L
Sbjct: 95 GVLLWDKEQGFWLVHSVPRFPPLPSLGNYSYPSSGTKYGQHFLCISLSYEQLNAIAKQLI 154
Query: 219 HNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTREL 278
+N+ YS L + P L +++ G F S T F +FAK+ +
Sbjct: 155 YNEPNVYSCNLPSAFANQLPNLQQLVNGSSVIETP-FNSSVTLTSLKGQKFKSFAKSGKF 213
Query: 279 GDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGVVEFRSTHDH 337
DD+Y ++ L VNLLVETW G G L ++C P V NV+ + + G +F T DH
Sbjct: 214 SDDIYSDWLAPTLKVNLLVETWQRGAGILPSNCSGPYK-VYNVKPITVDGP-QFSRTKDH 271
Query: 338 AKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDNEALWS 397
+KW +S + + +VC GDINR Q KRGGG+VCI N ++
Sbjct: 272 SKWAVS-------------------ESGKPWVCIGDINRQTTQAKRGGGTVCIQNANVYK 312
Query: 398 LYHSIISAVEPC 409
+ ++ EPC
Sbjct: 313 AFRKSVTNYEPC 324
>gnl|CDD|197220 cd09121, PLDc_DNaseII_2, Catalytic domain, repeat 2, of
Deoxyribonuclease II and similar proteins. Catalytic
domain, repeat 2, of Deoxyribonuclease II (DNase II, EC
3.1.22.1), an endodeoxyribonuclease with ubiquitous
tissue distribution. It is essential for accessory
apoptotic DNA fragmentation and DNA clearance during
development, as well as in tissue regeneration in higher
eukaryotes. Unlike the majority of nucleases, DNase II
functions optimally at acidic pH in the absence of
divalent metal ion cofactors. It hydrolyzes the
phosphodiester backbone of DNA by a single strand
cleavage mechanism to generate 3'-phosphate termini. The
majority of family members contain an N-terminal
signal-peptide leader sequence, which is critical for
N-glycosylation and DNase II activity. DNase II is a
monomeric nuclease that contains two copies of a variant
HKD motif, where the aspartic acid residue is not
conserved. The HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue) characterizes the
phospholipase D (PLD, EC 3.1.4.4) superfamily. The
catalytic center of DNase II is formed by the two
variant HKD motifs from the N- and C-terminal domains in
a pseudodimeric way. Members of this family are mainly
found in metazoans, and vertebrate proteins have been
further classified into DNase II alpha and beta (also
known as DNase II-like acid DNase, DLAD) subtypes. A few
homologs are found in non-metazoan species, but none are
found in fungi, plants or prokaryotes, with the sole
exception of Burkholderia pseudomallei. Among those
homologs, the Caenorhabditis elegans C07B5.5 ORF
encoding NUC-1 apoptotic nuclease, the uncharacterized
C. elegans crn-6 (cell death related nuclease) gene
encoding protein, and the putative gene CG7780 encoding
Drosophila DNase II (dDNase II) have similar cleavage
activity and specificity to mammalian DNase II enzymes.
They may function like an acid DNase implicated in
degrading DNA from apoptotic cells engulfed by
macrophages. Plancitoxin I, the major lethal factor from
the Acanthaster planci venom, is a unique homolog of
mammalian DNase II. It has potent hepatotoxicity and the
optimum pH for its activity is 7.2, unlike the optimum
acidic PH for mammalian DNase II. Some members of this
family contain substitutions of conserved residues found
in the putative active site, which suggest that these
proteins may have diverged from the canonical DNase II
activity and may perform other functions.
Length = 139
Score = 146 bits (371), Expect = 6e-43
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 20/153 (13%)
Query: 258 STIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHE 316
S + F +FAK+ + G DLY ++ L +LLVETW G G L +DC S ++
Sbjct: 6 SLELKSLGGVSFTSFAKSSKWGKDLYSDLVAPTLKTDLLVETWRGGGGNLPSDCSSK-YK 64
Query: 317 VMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINR 376
V NV+ ++L G + F+ST DH+KW +S D ++ +VC GDINR
Sbjct: 65 VYNVKSISLPGDIAFKSTKDHSKWAVS------------------VDSSKPWVCIGDINR 106
Query: 377 AEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 409
E Q KRGGG+VC N+ LW + + VEPC
Sbjct: 107 QESQFKRGGGTVCFKNKKLWKAFRKSVIDVEPC 139
>gnl|CDD|197219 cd09120, PLDc_DNaseII_1, Catalytic domain, repeat 1, of
Deoxyribonuclease II and similar proteins. Catalytic
domain, repeat 1, of Deoxyribonuclease II (DNase II, EC
3.1.22.1), an endodeoxyribonuclease with ubiquitous
tissue distribution. It is essential for accessory
apoptotic DNA fragmentation and DNA clearance during
development, as well as in tissue regeneration in higher
eukaryotes. Unlike the majority of nucleases, DNase II
functions optimally at acidic pH in the absence of
divalent metal ion cofactors. It hydrolyzes the
phosphodiester backbone of DNA by a single strand
cleavage mechanism to generate 3'-phosphate termini. The
majority of family members contain an N-terminal
signal-peptide leader sequence, which is critical for
N-glycosylation and DNase II activity. DNase II is a
monomeric nuclease that contains two copies of a variant
HKD motif, where the aspartic acid residue is not
conserved. The HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue) characterizes the
phospholipase D (PLD, EC 3.1.4.4) superfamily. The
catalytic center of DNase II is formed by the two
variant HKD motifs from the N- and C-terminal domains in
a pseudodimeric way. Members of this family are mainly
found in metazoans, and vertebrate proteins have been
further classified into DNase II alpha and beta (also
known as DNase II-like acid DNase, DLAD) subtypes. A few
homologs are found in non-metazoan species, but none are
found in fungi, plants or prokaryotes, with the sole
exception of Burkholderia pseudomallei. Among those
homologs, the Caenorhabditis elegans C07B5.5 ORF
encoding NUC-1 apoptotic nuclease, the uncharacterized
C. elegans crn-6 (cell death related nuclease) gene
encoding protein, and the putative gene CG7780 encoding
Drosophila DNase II (dDNase II) have similar cleavage
activity and specificity to mammalian DNase II enzymes.
They may function like an acid DNase implicated in
degrading DNA from apoptotic cells engulfed by
macrophages. Plancitoxin I, the major lethal factor from
the Acanthaster planci venom, is a unique homolog of
mammalian DNase II. It has potent hepatotoxicity and the
optimum pH for its activity is 7.2, unlike the optimum
acidic PH for mammalian DNase II. Some members of this
family contain substitutions of conserved residues found
in the putative active site, which suggest that these
proteins may have diverged from a canonical DNase II
activity and may perform other functions.
Length = 141
Score = 117 bits (295), Expect = 9e-32
Identities = 57/164 (34%), Positives = 86/164 (52%), Gaps = 26/164 (15%)
Query: 43 IQCVDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLN 102
+ C D+N N VDW YKLP++ SS +S G Y+Y S E +L+
Sbjct: 3 LSCKDDNGNDVDWFFVYKLPKLKSSGDS----GLGYLYADS-----------TNGEWQLS 47
Query: 103 KRNKHEKLNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQTPIRTT-VKFGHSKGL 161
N ++ + + G+ L+ + + + +LYNDQ P T+ GH+KG+
Sbjct: 48 LDNINDNNSAL----GRTLAQIYDS------NKENILYVLYNDQPPNGTSSSSRGHAKGV 97
Query: 162 VVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSL 205
V ++ G W+VHSVP F ++ SY+YP TG YGQ+FLC+SL
Sbjct: 98 VAFDNTSGFWLVHSVPKFPPLAEKSYSYPSTGTKYGQHFLCVSL 141
>gnl|CDD|197287 cd09191, PLDc_DNaseII_alpha_2, Catalytic domain, repeat 2, of
Deoxyribonuclease II alpha and similar proteins.
Catalytic domain, repeat 2, of Deoxyribonuclease II
alpha (DNase II alpha, EC 3.1.22.1) and similar
proteins. DNase II is a monomeric nuclease that contains
two copies of a variant HKD motif, where the aspartic
acid residue is not conserved. The HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue) characterizes the phospholipase D (PLD, EC
3.1.4.4) superfamily. The catalytic center of DNase II
is formed by the two variant HKD motifs from the N- and
C-terminal domains in a pseudodimeric way. Members of
this family are mainly found in metazoans, and
vertebrate proteins have been further classified into
DNase II alpha and beta. DNase II alpha is an acidic
endonuclease found in lysosomes, nuclei, and various
secretions. It plays a critical role in the degradation
of nuclear DNA expelled from erythroid precursor cells,
as well as in the degradation of the apoptotic DNA after
macrophages engulf them. It cleaves double-stranded DNA
to short 3'-phosphoryl oligonucleotides, rather than
3'-hydroxyl groups, and functions optimally at acidic pH
in the absence of divalent metal ion cofactors.
Length = 137
Score = 90.8 bits (225), Expect = 6e-22
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 22/142 (15%)
Query: 269 FHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSG 327
F +FAK GDDLY ++ L +LLV+ W G L ++C +V++V +
Sbjct: 17 FISFAKGASFGDDLYSGWVAPALQSDLLVQFWVRSTGVLPSNCSLG-WKVLDVTRINFPK 75
Query: 328 VVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGS 387
F+S+ DH+KW +S A +VC GD+NR + +RGGG+
Sbjct: 76 TSSFKSSQDHSKWCVS-------------------TKA-GWVCVGDMNRNMAEEQRGGGT 115
Query: 388 VCIDNEALWSLYHSIISAVEPC 409
VC+ + A+W + +++ E C
Sbjct: 116 VCLRDPAVWKAFRTLVVDYEDC 137
>gnl|CDD|197285 cd09189, PLDc_DNaseII_alpha_1, Catalytic domain, repeat 1, of
Deoxyribonuclease II alpha and similar proteins.
Catalytic domain, repeat 1, of Deoxyribonuclease II
alpha (DNase II alpha, EC 3.1.22.1) and similar
proteins. DNase II is a monomeric nuclease that contains
two copies of a variant HKD motif, where the aspartic
acid residue is not conserved. The HKD motif
(H-x-K-x(4)-D, where x represents any amino acid
residue) characterizes the phospholipase D (PLD, EC
3.1.4.4) superfamily. The catalytic center of DNase II
is formed by the two variant HKD motifs from the N- and
C-terminal domains in a pseudodimeric way. Members of
this family are mainly found in metazoans, and
vertebrate proteins have been further classified into
DNase II alpha and beta. DNase II alpha is an acidic
endonuclease found in lysosomes, nuclei, and various
secretions. It plays a critical role in the degradation
of nuclear DNA expelled from erythroid precursor cells,
as well as in the degradation of the apoptotic DNA after
macrophages engulf them. It cleaves double-stranded DNA
to short 3'-phosphoryl oligonucleotides, rather than
3'-hydroxyl groups, and functions optimally at acidic pH
in the absence of divalent metal ion cofactors.
Length = 162
Score = 90.4 bits (224), Expect = 2e-21
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 27/180 (15%)
Query: 43 IQCVDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLN 102
I C + VDW YKLP+ G+ Y+Y+ ++
Sbjct: 3 ISCYGDQGQAVDWFYVYKLPKEDGMEPQ--EEGDRYLYL--------DKSSGGW------ 46
Query: 103 KRNKHEKLNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQTP----IRTTVKFGHS 158
N +N G+ + Y+ + + ILYNDQ P + GH+
Sbjct: 47 -SNGQGLVNSTTGAVGRTVGQL-----YSQGKNTERAYILYNDQPPTVSLTDSGSSRGHT 100
Query: 159 KGLVVGNSRGGIWIVHSVPHFVD-DSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNL 217
KG+++ + G W+VHS PHF + Y +PH+ L+ GQNFLC++ Q ++G L
Sbjct: 101 KGVLLLDKHQGFWLVHSTPHFPPPAKEGQYYWPHSALINGQNFLCVTYPLEQFQTIGKQL 160
>gnl|CDD|197288 cd09192, PLDc_DNaseII_beta_2, Catalytic domain, repeat 2, of
Deoxyribonuclease II beta and similar proteins.
Catalytic domain, repeat 2, of Deoxyribonuclease II beta
(DNase II beta, EC 3.1.22.1), also known as DNase
II-like acid DNase (DLAD), and similar proteins. DNase
II is a monomeric nuclease that contains two copies of a
variant HKD motif, where the aspartic acid residue is
not conserved. The HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue) characterizes the
phospholipase D (PLD, EC 3.1.4.4) superfamily. The
catalytic center of DNase II is formed by the two
variant HKD motifs from the N- and C-terminal domains in
a pseudodimeric way. Members of this family are mainly
found in metazoans, and vertebrate proteins have been
further classified into DNase II alpha and beta. DNase
II beta, or DLAD, is a novel mammalian divalent
cation-independent endonuclease with homology to DNase
II alpha. It is highly expressed in the eye lens and in
salivary glands and is responsible for the degradation
of nuclear DNA during lens cell differentiation. DLAD
mainly exists as a cytoplasmic protein and cleaves DNA
to produce 3'-phosphoryl/5'-hydroxyl ends. Like DNase II
alpha, DLAD is active under acidic conditions with
maximum activity at pH 5.2. Aurintricarboxylic acid and
Zn2+ are effective inhibitors of DLAD activity. Mice
deficient in DLAD develop cataracts as they are unable
to degrade DNA during differentiation of the lens cells.
Length = 139
Score = 83.7 bits (207), Expect = 2e-19
Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 20/142 (14%)
Query: 269 FHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSG 327
F FAK++ DD++ ++ L +LLVETW + L ++C P H V N+ + L G
Sbjct: 17 FLHFAKSKYFVDDIFTAWVAQKLKTDLLVETWQHKGQELPSNCSLPYH-VYNINRIGLPG 75
Query: 328 VVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGS 387
+ F S +DH+KW +S + + + C GD+NR+ +Q R GG
Sbjct: 76 LSTFSSRYDHSKWCVSQKFKDQ------------------WTCIGDLNRSPEQAWRSGGF 117
Query: 388 VCIDNEALWSLYHSIISAVEPC 409
+C N+ ++ + ++ + C
Sbjct: 118 ICTQNKHIYKAFRKLVLYYKSC 139
>gnl|CDD|197286 cd09190, PLDc_DNaseII_beta_1, Catalytic domain, repeat 1, of
Deoxyribonuclease II beta and similar proteins.
Catalytic domain, repeat 1, of Deoxyribonuclease II beta
(DNase II beta, EC 3.1.22.1), also known as DNase
II-like acid DNase (DLAD), and similar proteins. DNase
II is a monomeric nuclease that contains two copies of a
variant HKD motif, where the aspartic acid residue is
not conserved. The HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue) characterizes the
phospholipase D (PLD, EC 3.1.4.4) superfamily. The
catalytic center of DNase II is formed by the two
variant HKD motifs from the N- and C-terminal domains in
a pseudodimeric way. Members of this family are mainly
found in metazoans, and vertebrate proteins have been
further classified into DNase II alpha and beta. DNase
II beta, or DLAD, is a novel mammalian divalent
cation-independent endonuclease with homology to DNase
II alpha. It is highly expressed in the eye lens and in
salivary glands and is responsible for the degradation
of nuclear DNA during lens cell differentiation. DLAD
mainly exists as a cytoplasmic protein and cleaves DNA
to produce 3'-phosphoryl/5'-hydroxyl ends. Like DNase II
alpha, DLAD is active under acidic conditions with
maximum activity at pH 5.2. Aurintricarboxylic acid and
Zn2+ are effective inhibitors of DLAD activity. Mice
deficient in DLAD develop cataracts as they are unable
to degrade DNA during differentiation of the lens cells.
Length = 165
Score = 81.1 bits (200), Expect = 4e-18
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 43 IQCVDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLN 102
I C +E VDW +FYKLP+ + +G Y+Y+ S + +
Sbjct: 4 ISCRNEEGEAVDWFVFYKLPKRKN--GGSTGSGLEYLYLDS-----------TTQSWQKS 50
Query: 103 KRNKHEKLNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQTPIRTTV--KFGHSKG 160
K + + + + ++ Y S + V +YND P + K+GH+KG
Sbjct: 51 KYLVNTTKSALGQTLQQLYEAYASK-------SNNTVYAIYNDAVPKPVNISRKYGHTKG 103
Query: 161 LVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNL 217
L++ + G W++HSVPHF + Y YP TG GQ +C++ + +Q + + L
Sbjct: 104 LLLWDRSQGFWLIHSVPHFPPFPEDGYGYPSTGKRNGQTAICITFSYNQFEEIDSQL 160
>gnl|CDD|217957 pfam04196, Bunya_RdRp, Bunyavirus RNA dependent RNA polymerase.
The bunyaviruses are enveloped viruses with a genome
consisting of 3 ssRNA segments (called L, M and S). The
nucleocapsid protein is encode on the small (S) genomic
RNA. The L segment codes for an RNA polymerase. This
family contains the RNA dependent RNA polymerase on the
L segment.
Length = 735
Score = 29.7 bits (67), Expect = 3.9
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 171 WIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLGHNQIY---KY-- 225
++VHS DDS TS ++P F + L AS + IY K
Sbjct: 559 FMVHS-----DDSSTSISFPEPVDDKTAWFNYVLLAASAFRLKEHLGKYLGIYLSPKKTT 613
Query: 226 ---------STFLSAGNKGVFPTLARVIAG 246
S F G V R +
Sbjct: 614 VTLTVMEFNSEFFFHGC--VVSPFIRWLLA 641
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
This model describes a subclass of aspartate kinases.
These are mostly Lys-sensitive and not fused to
homoserine dehydrogenase, unlike some Thr-sensitive and
Met-sensitive forms. Homoserine dehydrogenase is part of
Thr and Met but not Lys biosynthetic pathways. Aspartate
kinase catalyzes a first step in the biosynthesis from
Asp of Lys (and its precursor diaminopimelate), Met, and
Thr. In E. coli, a distinct isozyme is inhibited by each
of the three amino acid products. The Met-sensitive (I)
and Thr-sensitive (II) forms are bifunctional enzymes
fused to homoserine dehydrogenases and form
homotetramers, while the Lys-sensitive form (III) is a
monofunctional homodimer. The Lys-sensitive enzyme of
Bacillus subtilis resembles the E. coli form but is an
alpha 2/beta 2 heterotetramer, where the beta subunit is
translated from an in-phase alternative initiator at
Met-246. The protein slr0657 from Synechocystis PCC6803
is extended by a duplication of the C-terminal region
corresponding to the beta chain. Incorporation of a
second copy of the C-terminal domain may be quite common
in this subgroup of aspartokinases [Amino acid
biosynthesis, Aspartate family].
Length = 401
Score = 28.9 bits (65), Expect = 5.1
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 139 VKILYNDQTPIRTTVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQ 198
V+ PI F +G ++ NS +V + + T T G++ +
Sbjct: 217 VEPAMRSGVPIEVRSSFDPEEGTLITNSMENPPLVKGIAL--RKNVTRVTVHGLGMLGKR 274
Query: 199 NFL 201
FL
Sbjct: 275 GFL 277
>gnl|CDD|235912 PRK07028, PRK07028, bifunctional hexulose-6-phosphate
synthase/ribonuclease regulator; Validated.
Length = 430
Score = 28.8 bits (65), Expect = 5.6
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 15 EAVTSGIPLTKPLTTP--GTPYVNKEPNTLIQCVDENNNPVDWII 57
E G P+ P G P E N I C + P DWII
Sbjct: 332 EIRKLGFPVFARAIVPNAGEPKGFGEINAEIVCGGQTVRPGDWII 376
>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional.
Length = 272
Score = 28.5 bits (64), Expect = 7.0
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 317 VMNVEGVALSGVVEFRSTHDHAKWTI 342
VMN+ G++ G V+ R TH+ + +
Sbjct: 82 VMNIAGISAWGTVD-RLTHEQWRRMV 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,503,098
Number of extensions: 1927678
Number of successful extensions: 1515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1495
Number of HSP's successfully gapped: 20
Length of query: 412
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 313
Effective length of database: 6,546,556
Effective search space: 2049072028
Effective search space used: 2049072028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.1 bits)