RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy651
(412 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 1e-08
Identities = 90/443 (20%), Positives = 145/443 (32%), Gaps = 130/443 (29%)
Query: 31 GTPYVNKEPNTLIQCVDENN-----------NPVDWIIFYKLPRIHSSPNSLVVNGEAYM 79
P+ K + L + V E N N D+ F +L ++ + + LV +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEELRDLYQTYHVLV---GDLI 188
Query: 80 YVSSEDVKRFEEGKKKATEHKLNKRNKHEKLNGVDKKKGKILSPYLFNASYAPEFSADGV 139
S+E + A + N E L K YL P S +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK---DYL---LSIP-ISCPLI 241
Query: 140 KIL----Y------NDQTP--IRTTVK--FGHSKGLVVGN--SRGGIWIVHSVPHFVDDS 183
++ Y TP +R+ +K GHS+GLV + W F
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-----ESFFVSV 296
Query: 184 QTSYTYP-HTGLMYGQNFLCLSLNASQL-DSVGDNLG----------------HNQIYKY 225
+ + T G+ + + SL S L DS+ +N G + + K
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 226 STFLSAGNKGVFPTL-----ARVIAG--------------EYATSGDNFFQSTI-F---- 261
++ L AG + V +L V++G A SG + QS I F
Sbjct: 357 NSHLPAGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSERK 413
Query: 262 ----TRFNQI--PFHTF----AKTRELGDDLYKRISDNLNVNLL------VETWPNGPGR 305
RF + PFH+ A D + +S N + +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS--FNAKDIQIPVYDTFDGSD---- 467
Query: 306 LRTDCESPAHEVMNVEGVALSGV-----VEFRSTHDHAKWTISFGNETRSNLNQDSISKH 360
LR S + + V+ + V +F++TH + FG S L ++
Sbjct: 468 LRVLSGSISERI--VDCIIRLPVKWETTTQFKATH-----ILDFGPGGASGLG--VLTHR 518
Query: 361 KTDG--ARHFVCNG--DINRAED 379
DG R + G DIN +D
Sbjct: 519 NKDGTGVR-VIVAGTLDINPDDD 540
Score = 56.2 bits (135), Expect = 1e-08
Identities = 51/337 (15%), Positives = 109/337 (32%), Gaps = 84/337 (24%)
Query: 64 IHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLNKRNKHEKLNGVDKKKGKILSP 123
IH+ L+ + + + E +K + + + +K++ V + ++++
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARI-MAKRPFDKKSNSALFRAVGEGNAQLVA- 158
Query: 124 YLF-----NASYAPEFSADGVKILYNDQTPI------------------RTTVKFGHSKG 160
+F Y E + LY + + ++G
Sbjct: 159 -IFGGQGNTDDYFEEL-----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 161 LVVGNSRGGIWIVH--SVP--HFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDN 216
L + W+ + + P ++ S P G++ Q + A L
Sbjct: 213 LNILE-----WLENPSNTPDKDYLLSIPISC--PLIGVI--Q-LAHYVVTAKLLG----- 257
Query: 217 LGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTR 276
++ Y + ++G+ A IA S ++FF S + + F +
Sbjct: 258 FTPGELRSYLKGATGHSQGLV--TAVAIAE--TDSWESFFVSVR--KAITVLFFIGVRCY 311
Query: 277 ELGDDLYKRISDNLNVNLLVETWPNGPGRLRTDCESPAHEVM-NVEGVALSGVVEFRSTH 335
E Y S L ++L ++ N G SP M ++ + V ++
Sbjct: 312 EA----YPNTS--LPPSILEDSLENNEGV-----PSP----MLSISNLTQEQVQDY---- 352
Query: 336 DHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNG 372
++ N Q IS +GA++ V +G
Sbjct: 353 ------VNKTNSHLPAGKQVEISLV--NGAKNLVVSG 381
Score = 47.4 bits (112), Expect = 8e-06
Identities = 59/281 (20%), Positives = 87/281 (30%), Gaps = 107/281 (38%)
Query: 134 FSADGVKILYNDQTPIRTTVKFGHSKG---------LVVGNSRGGIWIVHSVPHFVDDSQ 184
FS + I+ N+ P+ T+ FG KG ++ G + +++
Sbjct: 1659 FSI--LDIVINN--PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 185 TSYTYPH-TGLMYGQNFLCLSL--NASQ--LDSVGDNLGHNQIYKYSTFLSAGNKGVFPT 239
TSYT+ GL LS Q L + + F +KG+ P
Sbjct: 1715 TSYTFRSEKGL--------LSATQFT-QPALTLME----------KAAFEDLKSKGLIPA 1755
Query: 240 LARVIA----GEY----ATSGDNFFQSTI---FTR--FNQIPFHTFAKTRELGDDLYKRI 286
A A GEY + + +S + F R Q ELG Y I
Sbjct: 1756 DA-TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ----VAVPRDELGRSNYGMI 1810
Query: 287 SDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVA--LSGVVEFRSTHDHAKWTISF 344
+ N PGR+ A + + VE V +VE I
Sbjct: 1811 AIN-------------PGRVAASFSQEALQYV-VERVGKRTGWLVE-----------I-- 1843
Query: 345 GNETRSNLN----QDSISKHKTDGARHFVCNGDINRAEDQL 381
N N Q +V GD+ RA D +
Sbjct: 1844 -----VNYNVENQQ-------------YVAAGDL-RALDTV 1865
Score = 46.6 bits (110), Expect = 1e-05
Identities = 73/452 (16%), Positives = 118/452 (26%), Gaps = 217/452 (48%)
Query: 4 LISIFS--LLVLVEAVTS-------GIP----LTKPLTTPGTPYVNKEP-----NTLIQ- 44
LI + L L+ G+ L P TP Y+ P +IQ
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 45 ------CVDENNNPV--------------------------DWIIFYKL----------- 61
P W F+
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 62 --------PRIHSSPNSL---VVNGE---AYMYVSSEDVKRFEEGKKKATEHKLNKRNKH 107
P P+ L + N E + M +S ++ + + + +NK N H
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPM-LSISNLTQ------EQVQDYVNKTNSH 359
Query: 108 ----EKL-----NGVDKKKGKILS--P---YLFNASYAPEFSADGVKILYNDQTPI---- 149
+++ NG ++S P Y N + + G+ DQ+ I
Sbjct: 360 LPAGKQVEISLVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGL-----DQSRIPFSE 411
Query: 150 RTTVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQ 209
R +KF + L V + P F H+ L+
Sbjct: 412 R-KLKFSNR-FLPV-----------ASP-F-----------HSHLL-----------VPA 435
Query: 210 LDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIP- 268
D + +L N + +F I QIP
Sbjct: 436 SDLINKDLVKNNV-------------------------------SFNAKDI-----QIPV 459
Query: 269 FHTF--AKTRELGDDLYKRISD---NLNVNLLVETWPN------------GPGRLRTDCE 311
+ TF + R L + +RI D L V W GPG
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVK-----WETTTQFKATHILDFGPGG------ 508
Query: 312 SPAHEVM---NVEG----VALSGVVEFRSTHD 336
+ V+ N +G V ++G ++ D
Sbjct: 509 ASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 53/391 (13%), Positives = 104/391 (26%), Gaps = 124/391 (31%)
Query: 9 SLLVL--------VEA--------VTSG-IPLTKPLTTPGTPYVNKEPNT---------- 41
LLVL A +T+ +T L+ T +++ + ++
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 42 -LIQCVDENNNPVDWIIFYKLPRIHSSPNSLVVN--GEAYMYVSSEDVKRFEEGKKKATE 98
L++ +D LPR + N ++ E+ + + ++
Sbjct: 306 LLLKYLD--------CRPQDLPREVLTTNPRRLSIIAESI----RDGLATWD-------- 345
Query: 99 HKLN-KRNKHEKLNGVDKKKGKILSPYLFNASYAPEFS--ADGVKI-------LYND--- 145
N K +KL + + +L P + + S I ++ D
Sbjct: 346 ---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 146 QTPIRTTVKFGHSKGLVVGNSRGGIWIVHSV-----PHFVDDSQ------TSYTYPHTGL 194
+ K H LV + + S+ ++ Y P
Sbjct: 402 SDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP---- 456
Query: 195 MYGQNFLCLSLNASQLDSVGDNLGHNQIYKY-----STFLSAGNKGVFPTLARVIAGEYA 249
+ F L LD Y + +F + +
Sbjct: 457 ---KTFDSDDLIPPYLD--------QYFYSHIGHHLKNIEHPERMTLFRMV-------FL 498
Query: 250 TSGD-NFFQSTIFTRFNQIPFHTFAKTRELGDDL--YKR-ISDNLN-----VNLLVETWP 300
D F + I R + ++ L YK I DN VN +++ P
Sbjct: 499 ---DFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 301 N-GPGRLRTDCESPAHEVMNVEGVALSGVVE 330
+ + + E + E
Sbjct: 554 KIEENLICSKYTDLLRIALMAED---EAIFE 581
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.31
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 23/50 (46%)
Query: 108 EKLNGVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQTP---IRTTVK 154
EK + K + L Y A + SA P I+ T++
Sbjct: 18 EK-QALKKLQAS-LKLY------ADD-SA-----------PALAIKATME 47
>3jsb_A Protein L, RNA-directed RNA polymerase; viral protein, vizier,
structural genomics, marseilles struc genomics program @
AFMB; 2.13A {Lymphocytic choriomeningitis virus}
Length = 204
Score = 29.1 bits (65), Expect = 1.8
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 219 HNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPF-----HTFA 273
HN K + + V P L +I Y ++ F R F
Sbjct: 69 HNHDDKSVETILVESGIVCPGLPLIIPDGYKLIDNSLILLECFVRSTPASFEKKFIEDTN 128
Query: 274 KTRELGDDLYK 284
K + +DL
Sbjct: 129 KLACIREDLAV 139
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, methyltransfer binding, rRNA processing;
HET: SAM; 2.60A {Sulfolobus solfataricus}
Length = 268
Score = 28.9 bits (64), Expect = 2.8
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 46 VDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLNKRN 105
DEN N VD+I + + E++ E+G + +L K+
Sbjct: 16 YDENGNIVDYITNPR------DLGKIT-----------EELLNNEKGIPFSATVELLKKV 58
Query: 106 KHEKLNGVDKKKGKILSPYLFNASYAP 132
+++ ++ + L + SY P
Sbjct: 59 NPQEVVVENEAEVPKLQALGYRVSYEP 85
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G +KG +P + N+ + DG K L +Q P++ V+ ++ VV
Sbjct: 92 GHGWQKGPRNAPTVLNSVFNTAQFWDGRAKDL-AEQAKGPVQAPVEMNNTPDQVV 145
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA;
HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Length = 388
Score = 28.6 bits (63), Expect = 4.4
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 46 VDENNNPVDWIIFYKLPRIHSSPNSLVVNGEAYMYVSSEDVKRFEEGKKKATEHKLNKRN 105
DEN N VD+I + + E++ E+G + +L K+
Sbjct: 16 YDENGNIVDYITNPR------DLGKIT-----------EELLNNEKGIPFSATVELLKKV 58
Query: 106 KHEKLNGVDKKKGKILSPYLFNASYAP 132
+++ ++ + L + SY P
Sbjct: 59 NPQEVVVENEAEVPKLQALGYRVSYEP 85
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 28.0 bits (63), Expect = 5.0
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G +KG SP +FNA + DG L +Q P++ V+ + VV
Sbjct: 70 GHGWQKGPRNSPTVFNAVFNAAQFWDGRAADL-AEQAKGPVQAGVEMSSTPDRVV 123
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding,
oxidoreduc electron transport; HET: HEC; 2.3A
{Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB:
1eb7_A*
Length = 323
Score = 28.0 bits (63), Expect = 6.0
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G +KG SP +FNA + DG K L +Q PI+ +V+ + LV
Sbjct: 70 GHGWQKGPRNSPTVFNAVFNAAQFWDGRAKDL-GEQAKGPIQNSVEMHSTPQLVE 123
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 28.1 bits (63), Expect = 6.1
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G +KG +P + NA + DG L +Q P++ V+ ++ VV
Sbjct: 84 GHGWQKGPRNAPTMLNAIFNAAQFWDGRAADL-AEQAKGPVQAGVEMSNTPDQVV 137
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 28.0 bits (63), Expect = 6.4
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G +KG +P NA + DG L Q P++ V+ ++ +V
Sbjct: 73 GHGWQKGPRNAPTALNAVFNVAQFWDGRAPDL-AAQAKGPVQAGVEMNNTPENLV 126
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 27.7 bits (62), Expect = 6.6
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADG-VKILYNDQT--PIRTTVKFGHSKGLVV 163
G ++G I SP + NA + DG L +Q PI + G + L
Sbjct: 66 GHHWQEGPINSPTVLNADFMLAQFWDGRASNL-KEQAAGPIANPKEMGFTHELAT 119
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171,
ISPD_THET8, ISPD, structural genomics PSI; 2.20A
{Thermus thermophilus HB8}
Length = 236
Score = 27.6 bits (62), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 363 DGARHFVCNGDINRAEDQLKRGGGSVC 389
D AR FV G + R + +R G +V
Sbjct: 113 DVARPFVSRGLVARVLEAAQRSGAAVP 139
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 27.6 bits (62), Expect = 8.2
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 112 GVDKKKGKILSPYLFNASYAPEFSADGVKILYNDQT--PIRTTVKFGHSKGLVV 163
G ++G I +P + N+S DG +Q PI + + +
Sbjct: 58 GHKWQQGPINAPTVLNSSMNLAQFWDGRAKDLKEQAAGPIANPKEMASTHEIAE 111
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 26.5 bits (58), Expect = 9.4
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 75 GEAYMYVSSEDVKRFE------------EGKKKATEHKLNKRNKHEKLNGVDKKKGK 119
G +Y S + K+FE + +K + + + K+N+ +K+ G K+ K
Sbjct: 71 GFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAK 127
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Desulfovibrio vulgaris}
Length = 434
Score = 27.4 bits (60), Expect = 9.8
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 129 SYAPEFSADGVKILYNDQTPIRTTVKF-GHSKGLVVGNSRGGIWIVHSV 176
A + D + + P T + GH L +G G + H++
Sbjct: 333 DIAKLDADDKEARIVAEGVPFMTLLWLRGHI-TLYLGLHEGQAAMFHNM 380
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.405
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,053,046
Number of extensions: 348571
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 24
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)