BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6519
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW N RH KAA+D ++ +FT + ++L A K GGG DP+ N RL + +D ++
Sbjct: 5 AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNN 63
Query: 88 MPMTTIENAI 97
M T+ AI
Sbjct: 64 MTRDTLNRAI 73
>pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From
Coxiella Burnetii
Length = 247
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KA +D ++ +FT L +++ +A + GG D ++N RL + +D ++
Sbjct: 5 AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARL-GGEDIDSNPRLRAVVDKAFAAN 63
Query: 88 MPMTTIENAIK-------SCNVPENIY-GY------LELSCLPWKPTLSIARL------- 126
P TI AIK N+ E Y GY + + CL ++A +
Sbjct: 64 XPKDTITRAIKRGAGSGAGDNLVEVRYEGYGPSGVAVXVDCLTDNKNRTVAEVRHAFSKC 123
Query: 127 ---VSLEGS-ACLVSAMSRVRFPPSAN 149
+ EGS A L + FPP+++
Sbjct: 124 DGNLGTEGSVAYLFKQRGLITFPPNSD 150
>pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
Aq1575 From Aquifex Aeolicus
Length = 249
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHS W I+H KA D ++ LF+ L +++ +A + GG +P N RL + I+ KK++
Sbjct: 2 AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR-LGGPNPEFNPRLRTAIEQAKKAN 60
Query: 88 MPMTTIENAIK 98
P IE AIK
Sbjct: 61 XPWENIERAIK 71
>pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural
Genomics Consortium Target Pr6
Length = 240
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 26 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKK 85
R A +W + + F L+K + LA K+GG ++P+TN +L + I K
Sbjct: 9 RAAKEKRWDKMSKV-----------FPKLAKAITLAAKDGG-SEPDTNAKLRTAILNAKA 56
Query: 86 SSMPMTTIENAIKSCNVPE------------NIYGYLELSCLPWKPTLSIARLVS 128
+MP I+ AIK + E N + + C+ PT +IA L S
Sbjct: 57 QNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKS 111
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 103 PENIYGYLELSCLPWK 118
PEN+Y Y++L+CL +K
Sbjct: 337 PENVYPYIQLACLLYK 352
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 103 PENIYGYLELSCLPWK 118
PEN+Y Y++L+CL +K
Sbjct: 341 PENVYPYIQLACLLYK 356
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 43 KDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNV 102
K+ KA F + L KE +P + + ++D C + +P+ + +K+C+V
Sbjct: 57 KEDRKALCFGDQKFNLHEVGKE---FEPKAAHPVPGSLDICLITEVPLEEMIQHLKACDV 113
Query: 103 P 103
P
Sbjct: 114 P 114
>pdb|3TX1|A Chain A, X-Ray Crystal Structure Of Listeria Monocytogenes Egd-E
Udp-N- Acetylenolpyruvylglucosamine Reductase (Murb)
Length = 322
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 16/108 (14%)
Query: 63 KEGGGTD----PNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWK 118
K GG D P T + YC ++ +P+T + N I G +
Sbjct: 50 KTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVI-------- 101
Query: 119 PTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNR--LGLFLECSEP 164
L + L ++E + + AMS + +A F N GL C P
Sbjct: 102 --LHLDLLQTIERNNTQIVAMSGAKLIDTAKFALNESLSGLEFACGIP 147
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 41 AAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNY----RLASTIDYCKKSSMPMTTIENA 96
A Q + T + +++L ++G G + ++ + +D+ KS N
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS--------NR 69
Query: 97 IKSCNVPENIYGYLELSCLPWKPTLSIARL 126
I +C+ N Y Y + WK TL + RL
Sbjct: 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRL 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,187,600
Number of Sequences: 62578
Number of extensions: 224763
Number of successful extensions: 535
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 9
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)