BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6519
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2A5L8|Y1800_NATTJ Probable transcriptional regulatory protein Nther_1800
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=Nther_1800 PE=3 SV=1
Length = 250
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 30/172 (17%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KA D+++ LF+ LSK++ +A KEGGG DP N+RL + K+++
Sbjct: 2 AGHSKWANIKHKKARVDEKRGKLFSKLSKEIIVAAKEGGG-DPEKNFRLRMAVQKAKENN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAM-------- 139
MP IE AIK + Y E+S + P G A + AM
Sbjct: 61 MPNDNIERAIKKGTGELKGFNYEEISYEGYGPG----------GVAIFLDAMTDNKNRTA 110
Query: 140 SRVRFPPSAN-----------FISNRLGLFLECSEPITRMKQASVLLATALA 180
S VR + N ++ +R GL E + + ++L TA A
Sbjct: 111 SEVRHIFTKNDGNLGEDGCVAWMFDRKGLITIDKEQAENIDEEELMLLTAEA 162
>sp|B2RYT9|TACO1_RAT Translational activator of cytochrome c oxidase 1 OS=Rattus
norvegicus GN=Taco1 PE=2 SV=1
Length = 295
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 25 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCK 84
V +AGH+KW +RHIK KD E++ +F+ L+ ++LAVKE GG +P N LA+ ++ C+
Sbjct: 52 VAFAGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKE-GGPNPENNSSLANILEVCR 110
Query: 85 KSSMPMTTIENAIKS 99
+MP +TIE+A+KS
Sbjct: 111 SKNMPKSTIESALKS 125
>sp|A8F5Z3|Y1011_THELT Probable transcriptional regulatory protein Tlet_1011
OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
14385 / TMO) GN=Tlet_1011 PE=3 SV=1
Length = 253
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H K A+D +K+ LFT L ++L +A +EGGG DP TN RL + I+ K+++
Sbjct: 2 SGHNKWANIKHRKMAQDAKKSQLFTKLIRELIVAAREGGG-DPETNSRLRTAIEKAKEAN 60
Query: 88 MPMTTIENAIK 98
MP IE AIK
Sbjct: 61 MPRENIEKAIK 71
>sp|Q8K0Z7|TACO1_MOUSE Translational activator of cytochrome c oxidase 1 OS=Mus musculus
GN=Taco1 PE=2 SV=1
Length = 294
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGH+KW +RHIK KD E++ +F+ L+ ++LAVKE GG +P N LA+ ++ C+ +
Sbjct: 55 AGHNKWSKVRHIKGPKDMERSRIFSKLTLSIRLAVKE-GGPNPENNSSLANILELCRSKN 113
Query: 88 MPMTTIENAIKS 99
MP +TIE+A+K+
Sbjct: 114 MPKSTIESALKT 125
>sp|A1K2Y6|Y574_AZOSB Probable transcriptional regulatory protein azo0574 OS=Azoarcus
sp. (strain BH72) GN=azo0574 PE=3 SV=1
Length = 241
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H K +D ++ +FT L K++ +A K GGG DPN N RL ID K S
Sbjct: 2 AGHSKWANIQHRKGRQDAKRGKVFTKLIKEVTVAAKMGGG-DPNANPRLRLAIDKAKAES 60
Query: 88 MPMTTIENAIK 98
MP IENAIK
Sbjct: 61 MPKDNIENAIK 71
>sp|Q8RIE0|Y1661_FUSNN Probable transcriptional regulatory protein FN1661 OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=FN1661 PE=3 SV=1
Length = 249
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 11/113 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW NI+H K A+D+++A LFT ++L +A KEGGG DPN N RL I+ K +
Sbjct: 2 SGHSKWNNIQHRKGAQDKKRAKLFTKFGRELTIAAKEGGG-DPNFNPRLRLAIEKAKAGN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMS 140
MP +E AIK + + E+ + P G+A +V A++
Sbjct: 61 MPKDILERAIKKGSGELEGVDFTEMRYEGYGPA----------GTAFIVEAVT 103
>sp|A7NH92|Y718_ROSCS Probable transcriptional regulatory protein Rcas_0718
OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8)
GN=Rcas_0718 PE=3 SV=1
Length = 255
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW +IR K DQ + LFT L++ + +A +EGG DP N+RL +D + ++
Sbjct: 2 SGHSKWHSIRRTKGVLDQRRGQLFTKLARDITIATREGGSGDPEANFRLRLAVDKARAAN 61
Query: 88 MPMTTIENAIK 98
MPM I+ AI
Sbjct: 62 MPMDNIQRAID 72
>sp|A5V1E4|Y4362_ROSS1 Probable transcriptional regulatory protein RoseRS_4362
OS=Roseiflexus sp. (strain RS-1) GN=RoseRS_4362 PE=3
SV=1
Length = 255
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW +IR K+ DQ + LFT L++ + +A +EGG DP N+RL +D + ++
Sbjct: 2 SGHSKWHSIRRTKSVLDQRRGQLFTKLARDITIATREGGSGDPEANFRLRLAVDKARAAN 61
Query: 88 MPMTTIENAI 97
MPM I+ AI
Sbjct: 62 MPMENIQRAI 71
>sp|B7IHX7|Y1246_THEAB Probable transcriptional regulatory protein THA_1246
OS=Thermosipho africanus (strain TCF52B) GN=THA_1246
PE=3 SV=1
Length = 252
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H KAA+D +K+ +FT L +++ +A KEGGG DP TN RL + ++ + ++
Sbjct: 2 SGHNKWANIKHRKAAQDAKKSKIFTKLIREIIVAAKEGGG-DPETNPRLRAVLERARAAN 60
Query: 88 MPMTTIENAIK 98
MP TIE +IK
Sbjct: 61 MPKDTIEKSIK 71
>sp|C5CGU7|Y1935_KOSOT Probable transcriptional regulatory protein Kole_1935
OS=Kosmotoga olearia (strain TBF 19.5.1) GN=Kole_1935
PE=3 SV=1
Length = 252
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H K A+D +K+ +FT + ++L +A +E GGTDPNTN L + I+ K ++
Sbjct: 2 SGHNKWANIKHRKMAQDAKKSKIFTKIIRELMVAARE-GGTDPNTNNALRAAIERAKAAN 60
Query: 88 MPMTTIENAIK 98
MP T+E AIK
Sbjct: 61 MPKDTMEKAIK 71
>sp|B8FQV9|Y3629_DESHD Probable transcriptional regulatory protein Dhaf_3629
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=Dhaf_3629 PE=3 SV=1
Length = 252
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW NI+H KA D +K +FT L ++L +A + GGG DPN N+RL ID K ++
Sbjct: 2 SGHSKWANIKHKKAKADAQKGKIFTKLGRELIVAARAGGG-DPNNNFRLKIAIDNAKSAN 60
Query: 88 MPMTTIENAIK 98
MP I+ AI+
Sbjct: 61 MPNDNIQRAIQ 71
>sp|Q24UN3|Y2470_DESHY Probable transcriptional regulatory protein DSY2470
OS=Desulfitobacterium hafniense (strain Y51) GN=DSY2470
PE=3 SV=1
Length = 252
Score = 73.6 bits (179), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW NI+H KA D +K +FT L ++L +A + GGG DPN N+RL ID K ++
Sbjct: 2 SGHSKWANIKHKKAKADAQKGKIFTKLGRELIVAARAGGG-DPNNNFRLKIAIDNAKSAN 60
Query: 88 MPMTTIENAIK 98
MP I+ AI+
Sbjct: 61 MPNDNIQRAIQ 71
>sp|A6LLP5|Y985_THEM4 Probable transcriptional regulatory protein Tmel_0985
OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
GN=Tmel_0985 PE=3 SV=1
Length = 252
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H KAA+D +++ +FT L +++ +A +EGGG DP TN RL + I+ + ++
Sbjct: 2 SGHNKWANIKHRKAAQDAKRSKIFTKLIREIIVAAREGGG-DPETNPRLRAVIERARAAN 60
Query: 88 MPMTTIENAIK 98
MP TIE +IK
Sbjct: 61 MPKDTIEKSIK 71
>sp|Q2Y5G2|Y2722_NITMU Probable transcriptional regulatory protein Nmul_A2722
OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
11849) GN=Nmul_A2722 PE=3 SV=1
Length = 240
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 11/122 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KAA+D ++ +FT L K++ +A + GGG DPN+N RL +D + +
Sbjct: 2 AGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARLGGG-DPNSNPRLRLAVDKAYEQN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP +E AIK + Y E+ + + G+A LV M+ R
Sbjct: 61 MPKENVERAIKRGSGDLEGVNYEEIRYEGY----------GIAGAAVLVDCMTDNRVRTV 110
Query: 148 AN 149
A+
Sbjct: 111 AD 112
>sp|B0TF65|Y1757_HELMI Probable transcriptional regulatory protein Helmi_17570
OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=Helmi_17570 PE=3 SV=1
Length = 255
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KA D +K +FT + ++L +A ++ GG DPN+N+RL I K+++
Sbjct: 2 AGHSKWANIKHRKAKVDAQKGKIFTKIGRELIVAARQ-GGPDPNSNFRLKIAIQKAKENN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVR 143
MP I+ AI+ Y EL+ + P G A ++ AM+ R
Sbjct: 61 MPNDNIQRAIQRGAGGTEGANYEELTYEGYGPG----------GVAIMIEAMTDNR 106
>sp|Q9BSH4|TACO1_HUMAN Translational activator of cytochrome c oxidase 1 OS=Homo sapiens
GN=TACO1 PE=1 SV=1
Length = 297
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGH+KW +RHIK KD E++ +F+ L ++LAVKE GG +P N LA+ ++ C+
Sbjct: 58 AGHNKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKE-GGPNPEHNSNLANILEVCRSKH 116
Query: 88 MPMTTIENAIK 98
MP +TIE A+K
Sbjct: 117 MPKSTIETALK 127
>sp|Q3AU82|Y165_CHLCH Probable transcriptional regulatory protein Cag_0165 OS=Chlorobium
chlorochromatii (strain CaD3) GN=Cag_0165 PE=3 SV=2
Length = 250
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KAA DQ++ LFT L K++ +A K GGG DP N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKAATDQKRGNLFTKLVKEITIAAKMGGG-DPTGNPRLRLAIDTARSNS 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKP 119
MPM I+ AIK G EL + W
Sbjct: 61 MPMDNIQRAIKK--------GTGELDGVSWDE 84
>sp|C0QT62|Y079_PERMH Probable transcriptional regulatory protein PERMA_0079
OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=PERMA_0079 PE=3 SV=1
Length = 250
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NIRH KA D ++ +FT + +++ +A ++GGG DP N RL I+ KK++
Sbjct: 2 AGHSKWHNIRHKKAKMDAKRGQMFTKIIREITVAARQGGG-DPEFNPRLRIAIEKAKKAN 60
Query: 88 MPMTTIENAIK 98
MP+ IE AIK
Sbjct: 61 MPVENIERAIK 71
>sp|A9BHC2|Y807_PETMO Probable transcriptional regulatory protein Pmob_0807
OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=Pmob_0807 PE=3 SV=1
Length = 251
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H K A+D +++ +FT L ++L +A +EGGG DP +N RL + ++ K ++
Sbjct: 2 SGHNKWANIKHRKGAQDAKRSQMFTKLIRELTIAAREGGG-DPESNPRLRTAVENAKAAN 60
Query: 88 MPMTTIENAIK 98
MP IE+AIK
Sbjct: 61 MPKDKIESAIK 71
>sp|Q8KBW7|Y1665_CHLTE Probable transcriptional regulatory protein CT1665 OS=Chlorobium
tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT1665
PE=3 SV=1
Length = 251
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KAA DQ++ +LFT L K++ +A K GGG DP N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKAATDQKRGSLFTKLVKEITIAAKMGGG-DPTGNPRLRLAIDTARANS 60
Query: 88 MPMTTIENAIK 98
MPM I+ AIK
Sbjct: 61 MPMDNIQRAIK 71
>sp|Q5QYV3|Y1088_IDILO Probable transcriptional regulatory protein IL1088 OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=IL1088 PE=3 SV=1
Length = 249
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KAA+D ++ +FT L +++ ++ +EGGG DP TN RL + ID ++
Sbjct: 2 AGHSKWSNIKHRKAAQDAKRGKIFTKLIREITVSAREGGG-DPETNPRLRAAIDKALSNN 60
Query: 88 MPMTTIENAIK 98
M TI+ A+K
Sbjct: 61 MKRDTIDTAVK 71
>sp|C4Z5P5|Y902_EUBE2 Probable transcriptional regulatory protein EUBELI_00902
OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48)
GN=EUBELI_00902 PE=3 SV=1
Length = 247
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSK+ NI H KAA D K +FT L K+L +AVKE GG D N N +L + CK ++
Sbjct: 2 SGHSKFANIAHKKAANDAAKGKIFTRLGKELMIAVKE-GGPDVNNNSKLRQVVAKCKAAN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP TI+ AIK ++ Y ++ + P G+A +V A++ R +
Sbjct: 61 MPNDTIDRAIKKA-ASNDMSNYESVTYEGYGPN----------GTAIIVEALTDNRNRAA 109
Query: 148 ANFIS 152
+N S
Sbjct: 110 SNIRS 114
>sp|B3QLZ4|Y525_CHLP8 Probable transcriptional regulatory protein Cpar_0525
OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0525
PE=3 SV=1
Length = 251
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KAA DQ++ LFT L K++ +A K GGG DP+ N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKAATDQKRGNLFTKLVKEITIAAKMGGG-DPSGNPRLRLAIDTARANS 60
Query: 88 MPMTTIENAIK 98
MPM I+ AIK
Sbjct: 61 MPMDNIQRAIK 71
>sp|Q7NTD5|Y3123_CHRVO Probable transcriptional regulatory protein CV_3123
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=CV_3123 PE=3 SV=1
Length = 241
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H K +D ++ +FT L K++ +A K GGG D N N RL +D K S
Sbjct: 2 AGHSKWANIQHRKGRQDAKRGKIFTRLIKEITVAAKMGGG-DANMNPRLRLAVDKAKAES 60
Query: 88 MPMTTIENAIK 98
MP IENAIK
Sbjct: 61 MPKDNIENAIK 71
>sp|B8G4I7|Y2594_CHLAD Probable transcriptional regulatory protein Cagg_2594
OS=Chloroflexus aggregans (strain MD-66 / DSM 9485)
GN=Cagg_2594 PE=3 SV=1
Length = 252
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW IR K+A DQ + LFT L++ + +A +EGG DP N+RL I+ + ++
Sbjct: 2 SGHSKWHTIRRAKSANDQRRGQLFTKLARDITIATREGGSGDPELNFRLRLAIEKARANN 61
Query: 88 MPMTTIENAIK 98
MP I+ AI+
Sbjct: 62 MPNENIQRAIE 72
>sp|B0K0L3|Y1449_THEPX Probable transcriptional regulatory protein Teth514_1449
OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_1449
PE=3 SV=1
Length = 246
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW NI+H K D +K +FT L+K + A KEGGG DPNTN +L I+ K ++
Sbjct: 2 SGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGG-DPNTNSKLRDAIEKAKANN 60
Query: 88 MPMTTIENAIKS-------CNVPENIY-GY 109
+P I+ AIK N+ E IY GY
Sbjct: 61 LPNENIQRAIKKGTGELGGANLEEVIYEGY 90
>sp|B0K951|Y1009_THEP3 Probable transcriptional regulatory protein Teth39_1009
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=Teth39_1009 PE=3 SV=1
Length = 246
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW NI+H K D +K +FT L+K + A KEGGG DPNTN +L I+ K ++
Sbjct: 2 SGHSKWANIKHKKEKMDAKKGRIFTKLTKDIIKAAKEGGG-DPNTNSKLRDAIEKAKANN 60
Query: 88 MPMTTIENAIKS-------CNVPENIY-GY 109
+P I+ AIK N+ E IY GY
Sbjct: 61 LPNENIQRAIKKGTGELGGANLEEVIYEGY 90
>sp|B4SDW5|Y657_PELPB Probable transcriptional regulatory protein Ppha_0657
OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 /
BU-1) GN=Ppha_0657 PE=3 SV=1
Length = 250
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KA DQ++ +LFT L K++ +A K GGG DP N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKAVTDQKRGSLFTKLVKEITIAAKMGGG-DPAGNPRLRLAIDTARDNS 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKP 119
MPM I+ AIK G EL + W
Sbjct: 61 MPMDNIQRAIKK--------GTGELEGVTWDE 84
>sp|Q3A233|Y2335_PELCD Probable transcriptional regulatory protein Pcar_2335 OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_2335
PE=3 SV=1
Length = 248
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H K A+D ++ +FT L K++ +A K GGG D N RL +D K+++
Sbjct: 2 AGHSKWANIKHRKGAQDAKRGKIFTKLIKEITVAAKIGGG-DLEANARLRLAVDKAKQAN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMS--RVRFP 145
MP IE AIK + Y E + + P G A +V M+ R R
Sbjct: 61 MPKDNIERAIKKGTGDLDGVTYEEGTFEGYGPG----------GVAVIVEFMTDNRTRTV 110
Query: 146 PSANFISNRLGLFLECSEPITRM 168
N+ G L S + M
Sbjct: 111 ADVRHSFNKFGGSLGVSGSVAFM 133
>sp|C0R1L5|Y1533_BRAHW Probable transcriptional regulatory protein BHWA1_01533
OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
GN=BHWA1_01533 PE=3 SV=1
Length = 247
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW +I+H KAA D +K +++ ++K++ +AVKEGG DP+ N RL I K ++
Sbjct: 2 SGHSKWASIKHKKAANDSKKGKIWSKIAKEITIAVKEGGSPDPDQNARLRMVIVKAKGTN 61
Query: 88 MPMTTIENAIK-------SCNVPENIY-GY 109
MP I+ AIK N+ E Y GY
Sbjct: 62 MPNDNIDRAIKRGAGAGEGANIEEMSYEGY 91
>sp|A7HM20|Y1106_FERNB Probable transcriptional regulatory protein Fnod_1106
OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=Fnod_1106 PE=3 SV=1
Length = 252
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW NI+H KAA+D +++ +FT L +++ +A +EGGG +P+TN RL + ++ ++++
Sbjct: 2 SGHNKWANIKHRKAAQDAKRSKIFTKLIREIIVAAREGGG-NPDTNPRLRAVLEKAREAN 60
Query: 88 MPMTTIENAIK 98
MP T+E +IK
Sbjct: 61 MPKDTVERSIK 71
>sp|Q3B2D4|Y1643_PELLD Probable transcriptional regulatory protein Plut_1643
OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_1643
PE=3 SV=1
Length = 250
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KA DQ++ +LFT L K++ +A K GGG DP+ N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKAVTDQKRGSLFTKLVKEITIAAKMGGG-DPSGNPRLRLAIDTARSNS 60
Query: 88 MPMTTIENAIK 98
MPM I+ A+K
Sbjct: 61 MPMDNIQRAVK 71
>sp|A4SG34|Y1432_PROVI Probable transcriptional regulatory protein Cvib_1432
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=Cvib_1432 PE=3 SV=1
Length = 250
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ K+A DQ++ LFT L K++ +A K GGG DP N RL ID + +S
Sbjct: 2 SGHSKWATIKRKKSATDQKRGNLFTKLVKEITIAAKMGGG-DPAGNPRLRLAIDTARSNS 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKP 119
MPM I+ AIK Y E++ + P
Sbjct: 61 MPMDNIQRAIKKGTGELEGVSYDEITYEGYGP 92
>sp|Q82XP6|Y210_NITEU Probable transcriptional regulatory protein NE0210 OS=Nitrosomonas
europaea (strain ATCC 19718 / NBRC 14298) GN=NE0210 PE=3
SV=1
Length = 241
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KAA+D ++ +FT L K++ +A + GGG DPN+N RL +D +
Sbjct: 2 AGHSKWANIKHKKAAQDAKRGKIFTRLIKEITVAARLGGG-DPNSNPRLRLAMDKAFGHN 60
Query: 88 MPMTTIENAIK-SCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVR 143
MP +E AIK C E + Y E+ + + G+A +V M+ R
Sbjct: 61 MPKDNVERAIKRGCGELEGV-NYEEIRYEGY----------GISGAAVMVDCMTDNR 106
>sp|B3EG35|Y475_CHLL2 Probable transcriptional regulatory protein Clim_0475 OS=Chlorobium
limicola (strain DSM 245 / NBRC 103803) GN=Clim_0475
PE=3 SV=1
Length = 250
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KAA DQ++ LFT L K++ ++ K GGG DP+ N RL +D + +S
Sbjct: 2 SGHSKWATIKRKKAATDQKRGNLFTKLVKEITISAKMGGG-DPSGNPRLRLAVDTARANS 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKP 119
MPM I+ AIK + Y E++ + P
Sbjct: 61 MPMDNIQRAIKKGTGELDGATYDEITYEGYGP 92
>sp|B8CXG6|Y1235_HALOH Probable transcriptional regulatory protein Hore_12350
OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM
9562) GN=Hore_12350 PE=3 SV=1
Length = 253
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KA +D+++ LF+ LSK + +A +EGGG DP N L I K ++
Sbjct: 2 AGHSKWANIKHKKAKEDRKRGKLFSKLSKMITVAAREGGG-DPEMNPDLRLAIQKAKDNN 60
Query: 88 MPMTTIENAIK 98
MP IE AIK
Sbjct: 61 MPNDNIERAIK 71
>sp|A5CCC2|Y251_ORITB Probable transcriptional regulatory protein OTBS_0251 OS=Orientia
tsutsugamushi (strain Boryong) GN=OTBS_0251 PE=3 SV=1
Length = 249
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 12/113 (10%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSK++NI+H K A+D++KA LF +L +++ L+ K GTD N+RL + I K ++
Sbjct: 2 AGHSKFKNIQHRKGAQDKKKAKLFASLIREISLSAK--SGTDIQYNHRLRAAISAAKFNN 59
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMS 140
+P IE AI N +N Y E++ + +G A +V A++
Sbjct: 60 LPKDRIEKAIAQANNKDNYENYFEITY----------EGIIFDGIAIIVEALT 102
>sp|B9LAL6|Y1141_CHLSY Probable transcriptional regulatory protein Chy400_1141
OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM
637 / Y-400-fl) GN=Chy400_1141 PE=3 SV=1
Length = 252
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW IR K DQ + LFT L++ + +A +EGG DP+ N+RL I+ + ++
Sbjct: 2 SGHSKWHTIRRTKGVNDQRRGQLFTKLARDITIATREGGSGDPDLNFRLRLAIEKARANN 61
Query: 88 MPMTTIENAIK 98
MP I+ AI
Sbjct: 62 MPNENIQRAID 72
>sp|A9WIH5|Y1043_CHLAA Probable transcriptional regulatory protein Caur_1043
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=Caur_1043 PE=3 SV=1
Length = 252
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW IR K DQ + LFT L++ + +A +EGG DP+ N+RL I+ + ++
Sbjct: 2 SGHSKWHTIRRTKGVNDQRRGQLFTKLARDITIATREGGSGDPDLNFRLRLAIEKARANN 61
Query: 88 MPMTTIENAIK 98
MP I+ AI
Sbjct: 62 MPNENIQRAID 72
>sp|B9LZC7|Y2326_GEOSF Probable transcriptional regulatory protein Geob_2326 OS=Geobacter
sp. (strain FRC-32) GN=Geob_2326 PE=3 SV=1
Length = 247
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW I+H K A D ++ +FT L K++ +A K GGG DP+ N RL + ID K +
Sbjct: 2 SGHNKWSTIKHKKGAADAKRGKIFTKLIKEITVAAKLGGG-DPDGNPRLRTAIDKAKGEN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP IE AIK + Y E + + P G+A LV M+ R
Sbjct: 61 MPKDNIERAIKKGTGGMDGVVYEETTYEGYGPG----------GAAVLVEVMTDNR---- 106
Query: 148 ANFISNRLGLFLECS 162
+S+ +F +C+
Sbjct: 107 NRTVSDVRSIFTKCN 121
>sp|Q8EEF0|Y2432_SHEON Probable transcriptional regulatory protein SO_2432 OS=Shewanella
oneidensis (strain MR-1) GN=SO_2432 PE=3 SV=1
Length = 248
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KAA+D ++ LFT ++L ++ +E GG+DP++N RL ID +
Sbjct: 2 AGHSKWANIKHRKAAQDAKRGKLFTKFIRELTVSARE-GGSDPDSNPRLRIAIDKALGGN 60
Query: 88 MPMTTIENAIK 98
M TIE AIK
Sbjct: 61 MTRDTIERAIK 71
>sp|P62036|Y1074_GEOSL Probable transcriptional regulatory protein GSU1074 OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=GSU1074 PE=3 SV=1
Length = 247
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW IRH K A D ++ +FT L K++ +A K GGG DPN N RL + +D K +
Sbjct: 2 SGHNKWSTIRHKKGAADAKRGKVFTKLIKEITVAAKIGGG-DPNGNPRLRAAVDKAKAEN 60
Query: 88 MPMTTIENAIK 98
MP IE AIK
Sbjct: 61 MPKDNIERAIK 71
>sp|Q0VRK0|Y750_ALCBS Probable transcriptional regulatory protein ABO_0750
OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=ABO_0750 PE=3 SV=1
Length = 247
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KAA+D ++ +FT L ++L +A K GGG +PN N RL + ID +
Sbjct: 2 AGHSKWANIKHRKAAQDAKRGKIFTKLIRELTVAAKMGGG-EPNDNPRLRAAIDKALGQN 60
Query: 88 MPMTTIENAIK 98
M TI+ A+K
Sbjct: 61 MTRDTIDRAVK 71
>sp|Q65GN7|Y2909_BACLD Probable transcriptional regulatory protein BLi02909/BL01150
OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=BLi02909 PE=3 SV=1
Length = 240
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW+NI+ K A+D ++ +F L+K++ +A KE GG DP +N L ID K ++
Sbjct: 2 AGHSKWKNIQRRKNAQDAKRGKIFMKLAKEIYVAAKE-GGPDPESNASLRLVIDKAKNAN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP I+ AIK + ++ Y E++ + P+ +A +V CL +R
Sbjct: 61 MPNDNIDRAIKKASGSQDGKSYEEITYEGYGPS-GVAVMVK-----CLTDNKNRTATSVR 114
Query: 148 ANFISN 153
F N
Sbjct: 115 TAFSKN 120
>sp|A5G9Y5|Y1416_GEOUR Probable transcriptional regulatory protein Gura_1416 OS=Geobacter
uraniireducens (strain Rf4) GN=Gura_1416 PE=3 SV=1
Length = 247
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW I+H K A D ++ +FT L K++ +A K GGG DP N RL + ID K +
Sbjct: 2 SGHNKWSTIKHKKGAADAKRGKIFTKLIKEITVAAKLGGG-DPEGNPRLRTAIDKAKGEN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP IE AIK + Y E + + P G+A LV M+ R
Sbjct: 61 MPKDNIERAIKKGTGGMDGVVYEETTYEGYGPG----------GAAVLVEVMTDNR---- 106
Query: 148 ANFISNRLGLFLECS 162
+S+ +F +C+
Sbjct: 107 NRTVSDVRSIFTKCN 121
>sp|Q3SGS9|Y2215_THIDA Probable transcriptional regulatory protein Tbd_2215
OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=Tbd_2215 PE=3 SV=1
Length = 243
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H K +D ++ +FT L K++ +A K GGG DP N RL I+ K S
Sbjct: 2 AGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGG-DPAMNPRLRLAIEKGKAES 60
Query: 88 MPMTTIENAIK-------SCNVPENIY-GY------LELSCLPWKPTLSIARL 126
+P IENAIK N E Y GY + + CL T ++A +
Sbjct: 61 LPKDNIENAIKRGTGQLEGVNYEEARYEGYGIGGVAVMVDCLTDNKTRTVADV 113
>sp|B3EMM7|Y542_CHLPB Probable transcriptional regulatory protein Cphamn1_0542
OS=Chlorobium phaeobacteroides (strain BS1)
GN=Cphamn1_0542 PE=3 SV=1
Length = 250
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GHSKW I+ KAA DQ++ LFT L +++ +A K GGG DP N RL ID K +S
Sbjct: 2 SGHSKWATIKRKKAATDQKRGNLFTKLVREITIAAKTGGG-DPGGNPRLRLAIDTAKMNS 60
Query: 88 MPMTTIENAIK 98
MP I+ AIK
Sbjct: 61 MPNDNIQRAIK 71
>sp|Q39XN9|Y743_GEOMG Probable transcriptional regulatory protein Gmet_0743
OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=Gmet_0743 PE=3 SV=1
Length = 247
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
+GH+KW I+H K A D ++ +FT + K++ +A K GGG DPN N RL S +D K +
Sbjct: 2 SGHNKWSTIKHKKGAADAKRGKVFTKIIKEITVAAKLGGG-DPNGNPRLRSAVDKAKAEN 60
Query: 88 MPMTTIENAIK 98
MP IE AIK
Sbjct: 61 MPKDNIERAIK 71
>sp|B7GFM4|Y709_ANOFW Probable transcriptional regulatory protein Aflv_0709
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=Aflv_0709 PE=3 SV=1
Length = 245
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW+NI+ K A+D ++ LF L+K++ +A K GGG DP TN L I+ K ++
Sbjct: 2 AGHSKWKNIQRRKNAQDAKRGKLFMKLAKEIYVAAKMGGG-DPTTNATLRLAIEKAKSAN 60
Query: 88 MPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPS 147
MP IE AIK + Y E+ + P ++ L + ++ RV F +
Sbjct: 61 MPNENIERAIKKATGNQEHTHYEEIRYEGYGPGGVAVMVICLTDNKNRTASNVRVAFSKN 120
Query: 148 A---------NFISNRLGLFLECSEPI 165
+++ +R GL + E +
Sbjct: 121 GGNLGETGCVSYLFDRKGLIVIARENL 147
>sp|B4U7S7|Y501_HYDS0 Probable transcriptional regulatory protein HY04AAS1_0501
OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=HY04AAS1_0501 PE=3 SV=1
Length = 249
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHS W I+H KA D +K LF L +++ +A K GG DPN N RL I+ +K S
Sbjct: 2 AGHSHWAQIKHKKAKVDAQKGKLFGKLIREITVATKLGG-PDPNANPRLRIAIEAARKVS 60
Query: 88 MPMTTIENAIK 98
MPM TIE AIK
Sbjct: 61 MPMDTIEKAIK 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,683,707
Number of Sequences: 539616
Number of extensions: 2921452
Number of successful extensions: 7539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 6443
Number of HSP's gapped (non-prelim): 731
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)