Query psy6519
Match_columns 208
No_of_seqs 218 out of 783
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:07:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 100.0 2.5E-55 8.6E-60 384.1 13.5 153 26-186 3-169 (247)
2 1kon_A Protein YEBC, YEBC; alp 100.0 8E-55 2.7E-59 381.3 8.5 152 25-185 2-167 (249)
3 1lfp_A Hypothetical protein AQ 100.0 8.4E-55 2.9E-59 381.2 6.6 151 27-184 1-165 (249)
4 1mw7_A Hypothetical protein HP 100.0 7.7E-52 2.6E-56 360.8 8.0 150 28-184 1-167 (240)
5 1b0n_B Protein (SINI protein); 37.7 35 0.0012 23.2 3.6 34 69-102 8-41 (57)
6 3c7m_A Thiol:disulfide interch 36.4 85 0.0029 23.5 6.1 47 51-98 93-140 (195)
7 4ham_A LMO2241 protein; struct 26.8 1.4E+02 0.0046 22.1 5.7 49 50-101 15-63 (134)
8 3neu_A LIN1836 protein; struct 24.0 1.7E+02 0.0058 21.4 5.8 49 50-101 14-62 (125)
9 1sfu_A 34L protein; protein/Z- 24.0 39 0.0013 24.2 2.0 27 77-103 30-56 (75)
10 2lnb_A Z-DNA-binding protein 1 21.2 66 0.0022 23.5 2.8 50 55-112 21-74 (80)
11 3tqn_A Transcriptional regulat 20.2 2.3E+02 0.0079 20.2 5.7 50 50-102 10-59 (113)
12 1tc3_C Protein (TC3 transposas 20.0 1E+02 0.0036 17.4 3.1 24 79-102 24-47 (51)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=100.00 E-value=2.5e-55 Score=384.12 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=129.6
Q ss_pred ccccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCC-C
Q psy6519 26 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVP-E 104 (208)
Q Consensus 26 ~maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~-~ 104 (208)
.|+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.|++||.+|++||++|||||+|||||||+++. +
T Consensus 3 ~maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG-~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~ 81 (247)
T 4f3q_A 3 AMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGG-EDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSGA 81 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC----
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCC
Confidence 59999999999999999999999999999999999999999 999999999999999999999999999999999875 2
Q ss_pred -Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhh
Q psy6519 105 -NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQA 171 (208)
Q Consensus 105 -~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a 171 (208)
.+| ++|| |||+|||+|||+++|| ++|.|+||+||.+|||+|||+|+|+|.+..+ . +..-.
T Consensus 82 ~~~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR-----~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~-~~d~~ 154 (247)
T 4f3q_A 82 GDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVR-----HAFSKCDGNLGTEGSVAYLFKQRGLITFPPN-S-DEEKI 154 (247)
T ss_dssp -CCCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHH-----HHHHHTTCEECCTTSSGGGEEEEEEEEECTT-C-CHHHH
T ss_pred cCCceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHH-----HHHHhcCceECCCCceeEEEeeeEEEEECCC-C-CHHHH
Confidence 355 9999 9999999999999999 7777799999999999999999999999754 2 22222
Q ss_pred hhHHHHhhccccccC
Q psy6519 172 SVLLATALAHNVFPV 186 (208)
Q Consensus 172 ~~s~a~A~A~~V~p~ 186 (208)
...+-.|.|.+|...
T Consensus 155 ~e~aieaGAeDv~~~ 169 (247)
T 4f3q_A 155 MEIALEVGAEDVTTN 169 (247)
T ss_dssp HHHHHHHTCSEEEEC
T ss_pred HHHHHhCCCceeeec
Confidence 333446779999865
No 2
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=100.00 E-value=8e-55 Score=381.35 Aligned_cols=152 Identities=26% Similarity=0.334 Sum_probs=124.7
Q ss_pred hccccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC
Q psy6519 25 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE 104 (208)
Q Consensus 25 ~~maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~ 104 (208)
.+|+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++..
T Consensus 2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~ 80 (249)
T 1kon_A 2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGG-GDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGD 80 (249)
T ss_dssp ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC------CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC----
T ss_pred CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCC
Confidence 369999999999999999999999999999999999999999 9999999999999999999999999999999998762
Q ss_pred --Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhh
Q psy6519 105 --NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQ 170 (208)
Q Consensus 105 --~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~ 170 (208)
.+| ++|| |||+|||+|||++||| ++|.|+||+||.+|||+|||+|+|+|.+..+ .+. .
T Consensus 81 ~~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~~--~ed-~ 152 (249)
T 1kon_A 81 DDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVR-----HAFSKCGGNLGTDGSVAYLFSKKGVISFEKG--DED-T 152 (249)
T ss_dssp --CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHTTTCEECCTTSSGGGEEEEEEEEESSS--CHH-H
T ss_pred cccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCceecCCCchhhhhheeeEEEECCC--CHH-H
Confidence 355 9999 9999999999999999 7777799999999999999999999999742 121 2
Q ss_pred hhhHHHHhhcccccc
Q psy6519 171 ASVLLATALAHNVFP 185 (208)
Q Consensus 171 a~~s~a~A~A~~V~p 185 (208)
....+-.|.|.+|..
T Consensus 153 ~le~aleaGAeDv~~ 167 (249)
T 1kon_A 153 IMEAALEAGAEDVVT 167 (249)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHhCCCceeee
Confidence 223333567999874
No 3
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=100.00 E-value=8.4e-55 Score=381.20 Aligned_cols=151 Identities=23% Similarity=0.327 Sum_probs=129.9
Q ss_pred cccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCC--
Q psy6519 27 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPE-- 104 (208)
Q Consensus 27 maGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~-- 104 (208)
|+|||||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++..
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~~~ 79 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGG-PNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGELEG 79 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHC-SCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSSS
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999999999999999999999999 9999999999999999999999999999999988752
Q ss_pred Ccc--eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhCccccCCCCcchhhccccceeecCchhhhhhhhh
Q psy6519 105 NIY--GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAMSRVRFPPSANFISNRLGLFLECSEPITRMKQAS 172 (208)
Q Consensus 105 ~~~--~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~gg~l~~sGSVsfmF~r~G~i~~~S~p~t~~~~a~ 172 (208)
.+| ++|| |||+|||+|||+++|| ++|.|+||+||.+|||+|||+|+|+|.+......+. ...
T Consensus 80 ~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed-~~l 153 (249)
T 1lfp_A 80 EQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVR-----HVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEE-ELL 153 (249)
T ss_dssp CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHH-HHH
T ss_pred cceEEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHH-HHH
Confidence 255 9999 9999999999999999 777779999999999999999999999874322222 222
Q ss_pred hHHHHhhccccc
Q psy6519 173 VLLATALAHNVF 184 (208)
Q Consensus 173 ~s~a~A~A~~V~ 184 (208)
..+-.|.|.+|.
T Consensus 154 e~aleaGAeDv~ 165 (249)
T 1lfp_A 154 EKAIEVGAEDVQ 165 (249)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHhcCCceee
Confidence 333356799886
No 4
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=100.00 E-value=7.7e-52 Score=360.82 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=111.3
Q ss_pred ccchHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCCcc
Q psy6519 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIY 107 (208)
Q Consensus 28 aGHsKW~nIkh~K~a~Da~ksk~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~~~ 107 (208)
+| |||+||||+|+++|++|+|+|+||+|||++|||+|| |||+.||+||.+|++||++|||||+|||||||+++.+.+|
T Consensus 1 aG-sKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG-~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~~~~~ 78 (240)
T 1mw7_A 1 MG-RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGG-SEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNL 78 (240)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTC-SCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTSTTCCC
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCe
Confidence 58 999999999999999999999999999999999999 9999999999999999999999999999999998874455
Q ss_pred --eEEE----------EEEecCCCCchhhhhhhhcchhhHhhhC-ccccCCCCcchhhccccceeecC----chhhhhhh
Q psy6519 108 --GYLE----------LSCLPWKPTLSIARLVSLEGSACLVSAM-SRVRFPPSANFISNRLGLFLECS----EPITRMKQ 170 (208)
Q Consensus 108 --~~yE----------ve~~Tdn~nRT~~~vR~~fgka~~~k~g-g~l~~sGSVsfmF~r~G~i~~~S----~p~t~~~~ 170 (208)
++|| |||+|||+|||++||| ++|.|+| |+|+.+|||+|||+|+|+|.+.. +...+...
T Consensus 79 eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR-----~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~ 153 (240)
T 1mw7_A 79 SEITYEGKANFGVLIIMECMTDNPTRTIANLK-----SYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLED 153 (240)
T ss_dssp EEEEEEEEETTTEEEEEEEEESCHHHHHHHHH-----HHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHH
T ss_pred EEEEEEEECCCceEEEEEEecCCHHHHHHHHH-----HHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHH
Confidence 9999 9999999999999999 6666799 99999999999999999999873 11111112
Q ss_pred hhhHHHHhhccccc
Q psy6519 171 ASVLLATALAHNVF 184 (208)
Q Consensus 171 a~~s~a~A~A~~V~ 184 (208)
....+-.|.|.+|.
T Consensus 154 ~le~aleaGAeDv~ 167 (240)
T 1mw7_A 154 LEFALIDYGLEELE 167 (240)
T ss_dssp HHHHHGGGTEEEEE
T ss_pred HHHHHHHCCCceee
Confidence 22233356788886
No 5
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=37.68 E-value=35 Score=23.24 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=27.7
Q ss_pred CCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCC
Q psy6519 69 DPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNV 102 (208)
Q Consensus 69 DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~ 102 (208)
.++.....-..|.+||+.||+.+-|..-+..-..
T Consensus 8 ~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 8 HFELDQEWVELMVEAKEANISPEEIRKYLLLNKK 41 (57)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcc
Confidence 4567778889999999999999999999986443
No 6
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=36.39 E-value=85 Score=23.55 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcCccchhHHHH-HHhcCCCHHHHHHHHH
Q psy6519 51 FTNLSKKLKLAVKEGGGTDPNTNYRLASTIDY-CKKSSMPMTTIENAIK 98 (208)
Q Consensus 51 fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~-AK~~nmPkd~IErAIk 98 (208)
+..+...+..|.=..| .|......|..+++. |++.|++.+.++++++
T Consensus 93 ~~~~~~~l~~a~~~~~-~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~ 140 (195)
T 3c7m_A 93 FKKAKFAYYAAYHDKK-ERWSDGKDPAAFIKTGLDAAGMSQADFEAALK 140 (195)
T ss_dssp HHHHHHHHHHHHHTSC-CCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHc
Confidence 4566677777776666 676666678877666 8899999999998875
No 7
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.76 E-value=1.4e+02 Score=22.10 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcC
Q psy6519 50 LFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCN 101 (208)
Q Consensus 50 ~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~ 101 (208)
+|.++..+|...+..|- - ...-+|-+.-+-|+..+|...+|.+|++.-.
T Consensus 15 lY~QI~~~i~~~I~~G~-l--~pG~~LPser~La~~~gVSr~tVReAl~~L~ 63 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGV-L--QEGEKILSIREFASRIGVNPNTVSKAYQELE 63 (134)
T ss_dssp HHHHHHHHHHHHHHHTS-S--CTTCEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-C--CCCCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67888888999998876 3 3346776666779999999999999999843
No 8
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.02 E-value=1.7e+02 Score=21.44 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcC
Q psy6519 50 LFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCN 101 (208)
Q Consensus 50 ~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~ 101 (208)
++..+...|...+..|. --| .-+|-+.-+-|+..+|...++.+|+++-.
T Consensus 14 ~~~~i~~~i~~~I~~g~-~~~--g~~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 14 IYSQISDWMKKQMITGE-WKG--EDKLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp HHHHHHHHHHHHHHTTS-SCT--TCBCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCC--CCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56677778888888776 333 46787788889999999999999999854
No 9
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.00 E-value=39 Score=24.23 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=23.3
Q ss_pred hhHHHHHHhcCCCHHHHHHHHHhcCCC
Q psy6519 77 ASTIDYCKKSSMPMTTIENAIKSCNVP 103 (208)
Q Consensus 77 ~~aI~~AK~~nmPkd~IErAIkka~~~ 103 (208)
..|.+-||+.|+||..|.++|-+-++.
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 568889999999999999999986543
No 10
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.19 E-value=66 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCCCCC----cceEEEE
Q psy6519 55 SKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPEN----IYGYLEL 112 (208)
Q Consensus 55 ~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~~~~----~~~~yEv 112 (208)
-..|-.+.|+.|+ | -.+-+-|++.++||..|++||++-.+.+- .--+|++
T Consensus 21 eekVLe~LkeaG~--P------lkageIae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw~~ 74 (80)
T 2lnb_A 21 EQRILQVLTEAGS--P------VKLAQLVKECQAPKRELNQVLYRMKKELKVSLTSPATWCL 74 (80)
T ss_dssp HHHHHHHHHHHTS--C------EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHcCC--C------CCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCCCceeeC
Confidence 3456667777773 3 23677799999999999999998654322 1266665
No 11
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=20.17 E-value=2.3e+02 Score=20.25 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcCccchhHHHHHHhcCCCHHHHHHHHHhcCC
Q psy6519 50 LFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNV 102 (208)
Q Consensus 50 ~fsKl~keI~vA~K~GG~~DP~~N~rL~~aI~~AK~~nmPkd~IErAIkka~~ 102 (208)
++..+...|...+..|. --| .-+|-+.-+-|+..+|...+|.+|++.-..
T Consensus 10 ~~~~i~~~i~~~I~~g~-~~~--G~~lPs~~~La~~~~vSr~tvr~al~~L~~ 59 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGS-YVE--GEMIPSIRKISTEYQINPLTVSKAYQSLLD 59 (113)
T ss_dssp HHHHHHHHHHHHHHHTS-SCT--TCEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCC--CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667777888888776 333 456766777899999999999999998543
No 12
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.02 E-value=1e+02 Score=17.37 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCC
Q psy6519 79 TIDYCKKSSMPMTTIENAIKSCNV 102 (208)
Q Consensus 79 aI~~AK~~nmPkd~IErAIkka~~ 102 (208)
.-+-|+..+++..+|.+-+++...
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HHHHHHHHCcCHHHHHHHHhhHHh
Confidence 446689999999999999998654
Done!