RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6519
(208 letters)
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
{Coxiella burnetii}
Length = 247
Score = 99.2 bits (248), Expect = 9e-26
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW NI+H KA +D ++ +FT L +++ +A + GG D ++N RL + +D ++
Sbjct: 5 AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGE-DIDSNPRLRAVVDKAFAAN 63
Query: 88 MPMTTIENAIK 98
MP TI AIK
Sbjct: 64 MPKDTITRAIK 74
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
structural genomics, BSGC structure funded by NIH,
protein structure initiative, PSI; 1.72A {Aquifex
aeolicus} SCOP: e.39.1.1
Length = 249
Score = 99.1 bits (248), Expect = 9e-26
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHS W I+H KA D ++ LF+ L +++ +A + GG +P N RL + I+ KK++
Sbjct: 2 AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGP-NPEFNPRLRTAIEQAKKAN 60
Query: 88 MPMTTIENAIK 98
MP IE AIK
Sbjct: 61 MPWENIERAIK 71
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
bacterial structural genomics initiative, BSGI,
structural genomics; 2.20A {Escherichia coli} SCOP:
e.39.1.1
Length = 249
Score = 98.8 bits (247), Expect = 1e-25
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 28 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSS 87
AGHSKW N RH KAA+D ++ +FT + ++L A K GGG DP+ N RL + +D ++
Sbjct: 5 AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNN 63
Query: 88 MPMTTIENAIK 98
M T+ AI
Sbjct: 64 MTRDTLNRAIA 74
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
e.39.1.1
Length = 240
Score = 80.3 bits (199), Expect = 1e-18
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 32 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMT 91
++ R K + + + +F L+K + LA K+GG +P+TN +L + I K +MP
Sbjct: 4 AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGS-EPDTNAKLRTAILNAKAQNMPKD 62
Query: 92 TIENAIK 98
I+ AIK
Sbjct: 63 NIDAAIK 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-06
Identities = 52/282 (18%), Positives = 81/282 (28%), Gaps = 122/282 (43%)
Query: 18 PDEGYL--------------LVRYA---------------------GHSKWQNIRHIKA- 41
PD+ YL L Y GHS Q + + A
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--QGL--VTAV 281
Query: 42 --AKDQEKATLFTNLSKKLKLAVK---EGGGTDPNTNYRLASTIDYCKK------SSM-- 88
A+ + F ++ K + + PNT+ S ++ + S M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLS 340
Query: 89 ----PMTTIENAIKSCNVPENIYGYLELSCLPWKPTLSIA------RLV------SLEGS 132
+++ + N S LP + I+ LV SL G
Sbjct: 341 ISNLTQEQVQDYVNKTN-----------SHLPAGKQVEISLVNGAKNLVVSGPPQSLYG- 388
Query: 133 ACLVSAMSRVRFPPSAN-----F------ISNRLGLFLECSEPITR------MKQASVLL 175
L + + + P + F SNR FL P+ + AS L+
Sbjct: 389 --LNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FL----PVASPFHSHLLVPASDLI 439
Query: 176 ATALAHN------------VFPVPGGPNRRTPLGGSI-PRLT 204
L N V+ G + R L GSI R+
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV-LSGSISERIV 480
Score = 27.3 bits (60), Expect = 5.0
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 4/16 (25%)
Query: 16 LIPDEGYLLVRYAGHS 31
LIP + +AGHS
Sbjct: 1752 LIPADAT----FAGHS 1763
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-04
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 43/137 (31%)
Query: 3 LLGRPLGVYKVHRLI------------------PDEGYLLVRYAGHSKWQNIRHIKAAKD 44
L + Y +HR I + Y + GH H+K +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-SHIGH-------HLKNIEH 486
Query: 45 QEKATLFTN-------LSKKLKLAVKEGGGTDPNTN-------YRLASTIDYCKKSSMPM 90
E+ TLF L +K++ + N Y+ D K +
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLV 545
Query: 91 TTIENAIKSCNVPENIY 107
I + + EN+
Sbjct: 546 NAILDFLPKIE--ENLI 560
Score = 27.5 bits (60), Expect = 4.1
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 41/115 (35%)
Query: 3 LLGRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAV 62
L P + + I D G + W N +H+ K L+ ++ ++
Sbjct: 323 LTTNPRRLSIIAESIRD---------GLATWDNWKHVNCDK----------LTTIIESSL 363
Query: 63 KEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPW 117
+P ++ + + S P S ++P + LS + W
Sbjct: 364 NV---LEPAEYRKM-----FDRLSVFP--------PSAHIPTIL-----LSLI-W 396
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 28.9 bits (65), Expect = 1.1
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 171 ASVLLATALAHNVFPVPGG---PNRRTPLGGSIPRLTNFS 207
A ++ A A V P G P + P ++ RL +
Sbjct: 357 ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNL-RL-APT 394
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta
sheet, PH superfold cytosolic, protein binding; 1.70A
{Arabidopsis thaliana}
Length = 230
Score = 27.8 bits (61), Expect = 2.4
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 145 PPSANFISNRLGLFLECSEPITRMKQASVLLATALAHNVFPVPGGPNRRTPLGGS 199
A + + G+ + R + A+++LA A + GP RT G S
Sbjct: 175 AAQALYWQAKKGVSFVIAFESERERNAAIMLARRFACDCNVTLAGPEDRTETGQS 229
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 27.4 bits (61), Expect = 3.9
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 171 ASVLLATALAHNVFPVPGG---PNRRTPLGGSIPRLTNFS 207
AS + A + G P R+ P ++ RL S
Sbjct: 362 ASRVAELAKEAGIALTGAGSSYPLRQDPENKNL-RL-APS 399
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 27.1 bits (59), Expect = 4.3
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 3 LLGRPLGVYKVHRLIPDEGYLLVRYAGHS 31
+ + + + + P+ +V AGHS
Sbjct: 269 MACQVQNAWDLAKAWPEAELHIVEGAGHS 297
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 26.7 bits (58), Expect = 5.4
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 3 LLGRPLGVYKVHRLIPDEGYLLVRYAGHS 31
++ + +H+ P + +GHS
Sbjct: 267 VVCPLQSAWDLHKAWPKAQLQISPASGHS 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,108,475
Number of extensions: 167668
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 15
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)