RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6519
         (208 letters)



>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
           [TaxId: 562]}
          Length = 244

 Score =  102 bits (255), Expect = 2e-27
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 29  GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSM 88
           GHSKW N RH KAA+D ++  +FT + ++L  A K GGG DP+ N RL + +D    ++M
Sbjct: 1   GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGG-DPDANPRLRAAVDKALSNNM 59

Query: 89  PMTTIENAIKSCNVPENIYGYLEL 112
              T+  AI      ++      +
Sbjct: 60  TRDTLNRAIARGVGGDDDANMETI 83


>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 243

 Score = 98.6 bits (245), Expect = 5e-26
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 31  SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPM 90
           S W  I+H KA  D ++  LF+ L +++ +A + GG  +P  N RL + I+  KK++MP 
Sbjct: 1   SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGP-NPEFNPRLRTAIEQAKKANMPW 59

Query: 91  TTIENAIKSCNVPENI 106
             IE AIK        
Sbjct: 60  ENIERAIKKGAGELEG 75


>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
           pylori [TaxId: 210]}
          Length = 220

 Score = 62.4 bits (151), Expect = 9e-13
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 50  LFTNLSKKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKSCNVPENIY 107
           +F  L+K + LA K+GG  +P+TN +L + I   K  +MP   I+ AIK  +  E   
Sbjct: 2   VFPKLAKAITLAAKDGGS-EPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSKEGNL 58


>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human
           (Homo sapiens), different isozymes [TaxId: 9606]}
          Length = 197

 Score = 26.4 bits (57), Expect = 2.6
 Identities = 16/150 (10%), Positives = 41/150 (27%), Gaps = 4/150 (2%)

Query: 5   GRPLGVYKVHRLIPDEGYLLVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKE 64
           G+PL + ++    P    + ++    +      +  +  D E             +    
Sbjct: 16  GKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESV 75

Query: 65  GGGTDPNTN--YRLASTIDYCKKSSMPMTTIENAIKSCNVPENIYGYLELSCLPWKPTLS 122
           G G          +   I  C +    +    N  +   V +      + +        +
Sbjct: 76  GEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKT 135

Query: 123 IARLVSLEGSA--CLVSAMSRVRFPPSANF 150
           I   +     +   +V+ +S  +  P    
Sbjct: 136 ILHYMGTSTFSEYTVVADISVAKIDPLIKV 165


>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia
          virus [TaxId: 10245]}
          Length = 64

 Score = 24.7 bits (53), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 55 SKKLKLAVKEGGGTDPNTNYRLASTIDY 82
          S+ + +  K    TD N NY +  TI+Y
Sbjct: 6  SRPINMKFKNSVETDANANYNIGDTIEY 33


>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
           {Clostridium perfringens [TaxId: 1502]}
          Length = 207

 Score = 26.0 bits (57), Expect = 3.4
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 15/82 (18%)

Query: 43  KDQEKATLF---------TNLSKKLKLAVKE--GGGTDPNTNYRLASTIDYCKKSSMPM- 90
           KD+E A  +          NL    K A++         +   +        +  S P  
Sbjct: 9   KDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPRE 68

Query: 91  ---TTIENAIKSCNVPENIYGY 109
                + NAI    + + I  Y
Sbjct: 69  KEYKNLRNAISKNKIDKPINVY 90


>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
          RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 23.9 bits (52), Expect = 6.1
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 44 DQEKATLFTNLS--KKLKLAVKEGGGTDPNTNYRLASTIDYCKKSSMPMTTIENAIKS 99
          D + A         +KL   + E  G           + D   KS++P+T I   +K+
Sbjct: 1  DSQNAGKMKGSDNQEKLVYQIIEDAGNKG------IWSRDVRYKSNLPLTEINKILKN 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,580
Number of extensions: 31965
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 7
Length of query: 208
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,295,466
Effective search space: 164524182
Effective search space used: 164524182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)