BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy652
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZK8|DNS2A_RAT Deoxyribonuclease-2-alpha OS=Rattus norvegicus GN=Dnase2 PE=2 SV=1
Length = 350
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 38/281 (13%)
Query: 60 ILYNDQTPIRTTVKF----GHSKGLVVGNSRGGIWIVHSVPHFVDDSQT-SYTYPHTGLM 114
+LYNDQ P ++ + GH+KG+++ + GG W+VHSVP F + + +Y++P
Sbjct: 96 LLYNDQPPKSSSAQDSSSRGHTKGVLLLDQEGGFWLVHSVPRFPSPASSGAYSWPPNART 155
Query: 115 YGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVF----PTLARVIAGEYATS 170
YGQ LC+SL SQ +G L Y Y +G+F P L V G +
Sbjct: 156 YGQTLLCVSLPFSQFPGIGKQL----TYTYPLVYDHKLEGIFAQKLPDLEEVTKGHHVLR 211
Query: 171 GDNFFQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDC 229
+ + S I T F +FAK + GDDLY ++ L NL V+ WPN PG L ++C
Sbjct: 212 -EPWNSSVILTSRAGTTFQSFAKFGKFGDDLYSGWLAAALGTNLQVQFWPNSPGILPSNC 270
Query: 230 ESPAHEVMNVEGVALSGV--VEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHF 287
S H++++V G F +T DH+KW ++ +G +
Sbjct: 271 -SGTHKILDVTETGFPGPSGPTFNATEDHSKWCVA------------------PEGP--W 309
Query: 288 VCNGDINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 328
VC GD+NR + + RGGG++C ALW + S++ A +PC
Sbjct: 310 VCVGDMNRNKRETHRGGGTLCTQVPALWKAFRSLVKACKPC 350
>sp|P34387|TG198_CAEEL Cell-death-related nuclease 7 OS=Caenorhabditis elegans GN=crn-7
PE=2 SV=2
Length = 367
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 29/289 (10%)
Query: 47 ASYAPEFSAD---GVKILYNDQTPIRTTVKF-GHSKGLVVGNSRGGIWIVHSVPHFVDDS 102
A+ + +SAD +Y+D PI++ + GH+KG+ + +S G W++HSVP+F
Sbjct: 76 ATVSQVYSADKSNNFWFMYSDDDPIKSADSYRGHAKGVSLFDSTTGFWLIHSVPNF--PP 133
Query: 103 QTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARV 162
S++YP+T YGQ+F C S+ L + ++ + Q Y + FPTL V
Sbjct: 134 IKSFSYPNTAEKYGQSFFCASMEVQHLTELAEHWKYIQATPYIINIPEKYATRFPTLKNV 193
Query: 163 IAGE-YATSGDNFFQSTIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPN 220
A + S F+ S + +AK ++ D++ IS V L VE+W N
Sbjct: 194 EAKQSLPRSATQFWISKPIKTVQGVTLMAYAKHKKFDGDIWNDLISRQNKVTLAVESWLN 253
Query: 221 GPGR-LRTDCESPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKH 279
G G + T C S + + +V + ++G+ F S+ DH+KW +S N + I
Sbjct: 254 GSGDDIHTTCTSTS-QTHDVTEMRVTGL-NFASSKDHSKWAVS-------NSQTNPI--- 301
Query: 280 KTDGARHFVCNGDINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 328
VC GD+NR + QLKRGGG++CI N LW LYHS + VEPC
Sbjct: 302 --------VCFGDMNRQKSQLKRGGGALCIQNRNLWQLYHSFVIQVEPC 342
>sp|O00115|DNS2A_HUMAN Deoxyribonuclease-2-alpha OS=Homo sapiens GN=DNASE2 PE=1 SV=2
Length = 360
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 30/277 (10%)
Query: 60 ILYNDQTPIRTTVK----FGHSKGLVVGNSRGGIWIVHSVPHFVDD-SQTSYTYPHTGLM 114
+LYNDQ P + + GH+KG+++ + GG W+VHSVP+F S +Y++PH+
Sbjct: 93 LLYNDQPPQPSKAQDSSMRGHTKGVLLLDHDGGFWLVHSVPNFPPPASSAAYSWPHSACT 152
Query: 115 YGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNF 174
YGQ LC+S +Q +G L + + Y+ L FP L V+ G + S + +
Sbjct: 153 YGQTLLCVSFPFAQFSKMGKQLTYTYPWVYNYQLEGIFAQEFPDLENVVKGHH-VSQEPW 211
Query: 175 FQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDCESPA 233
S T F +FAK + GDDLY ++ L NL V+ W G L ++C S
Sbjct: 212 NSSITLTSQAGAVFQSFAKFSKFGDDLYSGWLAAALGTNLQVQFWHKTVGILPSNC-SDI 270
Query: 234 HEVMNVEGVALSGVV--EFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNG 291
+V+NV +A G F ST DH+KW +S + C G
Sbjct: 271 WQVLNVNQIAFPGPAGPSFNSTEDHSKWCVSPKGP--------------------WTCVG 310
Query: 292 DINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 328
D+NR + + +RGGG++C ALW + ++ +PC
Sbjct: 311 DMNRNQGEEQRGGGTLCAQLPALWKAFQPLVKNYQPC 347
>sp|Q75WF2|DNA2_ACAPL Plancitoxin-1 OS=Acanthaster planci PE=1 SV=1
Length = 358
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 137/273 (50%), Gaps = 24/273 (8%)
Query: 60 ILYNDQTPIRTTVK---FGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYG 116
++YNDQ P ++ GH+KG++ + G W+VHSVP F + SY +P G
Sbjct: 105 VMYNDQPPAGEEIQSGLVGHTKGVLAFDGTSGFWLVHSVPKFPLPASKSYNWPDNAKRNG 164
Query: 117 QNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQ 176
Q LC++ Q + +G L +N Y + L + G P++ ++ + TS Q
Sbjct: 165 QTLLCITFKYDQFEKIGQQLKYNYPGVYDSDLPSKLVGKTPSIVDLVKNVHVTSPPWNRQ 224
Query: 177 STIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHE 235
+ ++ Q F +F K + G+DLYK ++ + L ETW NG L + CE+
Sbjct: 225 LNLQSKSGQT-FVSFNKASKWGEDLYKNWLATHFKSGLYCETWQNGGRNLNSSCEA-GLN 282
Query: 236 VMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINR 295
V NV+ V+LSG +F+ T DH+KW ++ T+S L + C G INR
Sbjct: 283 VYNVKKVSLSGGSDFKGTKDHSKWAVT----TKSGLK--------------WTCIGGINR 324
Query: 296 AEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 328
Q+ RGGG+VC++N + ++ ++ EPC
Sbjct: 325 QTSQMYRGGGAVCLENANVHKAFYDSVAEYEPC 357
>sp|P56542|DNS2A_MOUSE Deoxyribonuclease-2-alpha OS=Mus musculus GN=Dnase2 PE=2 SV=1
Length = 353
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 134/277 (48%), Gaps = 30/277 (10%)
Query: 60 ILYNDQTP----IRTTVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQT-SYTYPHTGLM 114
+LYNDQ P R + GH+KG+++ + GG W+VHSVP F + + +YT+P
Sbjct: 95 LLYNDQPPKSSSARDSTGHGHTKGVLLLDQEGGFWLVHSVPRFPPPASSGAYTWPPNAQT 154
Query: 115 YGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNF 174
+GQ LC+SL +Q +G L + Y L P L VI ++ + +
Sbjct: 155 FGQTLLCVSLPFTQFARIGKQLTYTYPLVYDHKLEGFFAQKLPDLETVIKNQHVLH-EPW 213
Query: 175 FQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDCESPA 233
S I T F +FAK + GDDLY +++ L NL V+ W N PG L ++C S A
Sbjct: 214 NSSVILTSQAGATFQSFAKFGKFGDDLYSGWLAEALGTNLQVQFWQNSPGILPSNC-SGA 272
Query: 234 HEVMNVEGVALSGV--VEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNG 291
++V++V G + F +T DH+KW ++ + C G
Sbjct: 273 YQVLDVTQTGFPGPSRLTFSATEDHSKWCVAPQGP--------------------WACVG 312
Query: 292 DINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPC 328
D+NR + + RGGG+VC + W + S++ +PC
Sbjct: 313 DMNRNKAETHRGGGTVCTQLPSFWKAFQSLVKDWKPC 349
>sp|O62855|DNS2A_PIG Deoxyribonuclease-2-alpha OS=Sus scrofa GN=DNASE2 PE=1 SV=1
Length = 364
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 134/280 (47%), Gaps = 30/280 (10%)
Query: 60 ILYNDQTPI----RTTVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTS-YTYPHTGLM 114
+LYNDQ P + + GH+KG+++ + GG W++HSVP+F S ++ Y++P +
Sbjct: 95 LLYNDQPPKYRGSQHSSNRGHTKGVLLLDQEGGFWLIHSVPNFPPPSSSAAYSWPPSART 154
Query: 115 YGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNF 174
YGQ +C+S +Q ++ L + Y L FP L V+ G + + +
Sbjct: 155 YGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARKFPYLEEVVKGHHVLQ-EPW 213
Query: 175 FQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDCESPA 233
S T F +FAK GDDLY +++ L NL V+ W G L ++C
Sbjct: 214 NSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQ 273
Query: 234 HEVMNVEGVALSGVV--EFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNG 291
H V++V +A G F +T DH+KW ++ R + C G
Sbjct: 274 H-VLDVTQIAFPGPAGPNFNATEDHSKWCVA--------------------PERPWTCVG 312
Query: 292 DINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPCPRE 331
D+NR + + RGGG++C ALW + ++ A EPC +E
Sbjct: 313 DMNRNKREEHRGGGTLCAQLPALWKAFKPLVKAWEPCEKE 352
>sp|Q17778|NUC1_CAEEL Deoxyribonuclease-2 OS=Caenorhabditis elegans GN=nuc-1 PE=3 SV=1
Length = 375
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 122/261 (46%), Gaps = 27/261 (10%)
Query: 70 TTVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQL 129
T+ FGH+KG + + G+W+VHSVP F + T Y YP +G YGQ LC++ +QL
Sbjct: 139 TSTAFGHTKGTIFFDGTSGVWLVHSVPLFPN--PTKYEYPVSGHDYGQTMLCMTFKYAQL 196
Query: 130 DSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTI-FTRFNQIPF 188
S+G L N+ YS+ L LA+ IAG+Y FQS I F
Sbjct: 197 KSIGTQLFFNRPNIYSSNLPTNMAADNADLAKAIAGQYQKGQP--FQSVIELETMAGYSF 254
Query: 189 HTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGV 247
FAK++E DLY ++ L +L+VETW G + DC+ H + + +
Sbjct: 255 TNFAKSKEFNADLYDTLVAPTLKTDLVVETWRRG-SEIPLDCKLTYH-ANDALSIHVGST 312
Query: 248 VEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSV 307
F T DH+K H D + +VC GDINR Q RGGG+
Sbjct: 313 TAFSYTKDHSK------------------MAHSADMTKPWVCIGDINRMTSQYVRGGGTT 354
Query: 308 CIDNEALWSLYHSIISAVEPC 328
CI + LW Y S+I+ C
Sbjct: 355 CISSSFLWKAY-SVIATQNNC 374
>sp|Q9QZK9|DNS2B_RAT Deoxyribonuclease-2-beta OS=Rattus norvegicus GN=Dnase2b PE=1 SV=1
Length = 356
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 28/317 (8%)
Query: 15 STVNTLQWTLSKYSVSDPASLPGKILSPYLFNASYAPEFSADGVKILYNDQTP--IRTTV 72
ST+ T W+ S + ++ S G+ L L+ A A D ++YND P + +
Sbjct: 64 STMRT--WSKSHHLINSSRSSLGRTLEQ-LYEAHNAKN---DTAYLIYNDAVPASVNYSG 117
Query: 73 KFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSV 132
+GH+KGL+V N G W++HS+P F + Y YP +G Y Q+ LC++L SQ +++
Sbjct: 118 NYGHAKGLLVWNRVQGFWLIHSIPKFPPVPEKGYEYPSSGRQYAQSGLCITLKYSQYETI 177
Query: 133 GDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFA 192
L Q YS F+ + + ++ A A+ + + T+ + F FA
Sbjct: 178 DSQLLVFQPNIYSCFIPNIFRWELIHMPQMCAKSSASKIPS-RRLTVLQSAQGLNFLHFA 236
Query: 193 KTRELGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGVVEFR 251
K+ DD++ I+ L V+LLVE+W L ++C P H V N++ + +F
Sbjct: 237 KSTFYTDDIFAAWIAQKLKVHLLVESWQRKNHELPSNCSLPYH-VYNIKAIRGPLQSDFP 295
Query: 252 STHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDN 311
S HDH+KW +S D + C GD+NR+ Q R GG +C N
Sbjct: 296 SHHDHSKWCVS-----------------TKDSQARWTCIGDLNRSPHQALRSGGFICSKN 338
Query: 312 EALWSLYHSIISAVEPC 328
++ + ++S C
Sbjct: 339 RYIYQSFDRLVSHYASC 355
>sp|P56541|DNS2A_BOVIN Deoxyribonuclease-2-alpha OS=Bos taurus GN=DNASE2 PE=2 SV=2
Length = 365
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 129/280 (46%), Gaps = 32/280 (11%)
Query: 60 ILYNDQTPIRTTVKF----GHSKGLVVGNSRGGIWIVHSVPHFVDDSQTS-YTYPHTGLM 114
+LYNDQ P + K GH+KG+++ + GG W++HSVP+F + ++ Y++P
Sbjct: 96 VLYNDQPPKSSESKDSSSRGHTKGVLLLDQEGGFWLIHSVPNFPPRASSAVYSWPPGAQK 155
Query: 115 YGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNF 174
YGQ +C+S +Q + L + Y L FP L V+ G + G +
Sbjct: 156 YGQTLICVSFPLTQFLDISKQLTYTYPLVYDHRLEGDFAQKFPYLEEVVKGHHVRQGP-W 214
Query: 175 FQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDCESPA 233
S T F +FAK GDDLY +S+ L L V+ W G L ++C S A
Sbjct: 215 NSSVTLTSKKGATFQSFAKFGNFGDDLYSGWLSEALGSTLQVQFWQRSSGILPSNC-SGA 273
Query: 234 HEVMNVEGVALSGVV--EFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNG 291
V +V A G F +T DH+KW ++ + C G
Sbjct: 274 QHVFDVTQTAFPGPAGPAFNATEDHSKWCVTPKGP--------------------WACVG 313
Query: 292 DINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPCPRE 331
D+NR + + RGGG++C + LW + ++ A EPC ++
Sbjct: 314 DMNRNQREEHRGGGTLCA--QMLWKAFKPLVKAWEPCEKK 351
>sp|Q8WZ79|DNS2B_HUMAN Deoxyribonuclease-2-beta OS=Homo sapiens GN=DNASE2B PE=2 SV=1
Length = 361
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 144/313 (46%), Gaps = 25/313 (7%)
Query: 19 TLQWTLSKYSVSDPASLPGKILSPYLFNASYAPEFSADGVKILYND--QTPIRTTVKFGH 76
T W S+ ++D S+ G+ L L+ A YA + S + ++YND P+ + K+GH
Sbjct: 70 TRSWRKSEQLMNDTKSVLGRTLQQ-LYEA-YASK-SNNTAYLIYNDGVPKPVNYSRKYGH 126
Query: 77 SKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNL 136
+KGL++ N G W++HS+P F + Y YP TG GQ+ +C++ +Q +++ L
Sbjct: 127 TKGLLLWNRVQGFWLIHSIPQFPPIPEEGYDYPPTGRRNGQSGICITFKYNQYEAIDSQL 186
Query: 137 GHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTRE 196
YS + A + ++ ++ +T+ + Q H FAK+
Sbjct: 187 LVCNPNVYSCSIPATFHQELIHMPQLCTRASSSEIPGRLLTTLQSAQGQKFLH-FAKSDS 245
Query: 197 LGDDLYKR-ISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGVVEFRSTHD 255
DD++ ++ L +LL ETW L ++C P H V N++ + LS F S D
Sbjct: 246 FLDDIFAAWMAQRLKTHLLTETWQRKRQELPSNCSLPYH-VYNIKAIKLSRHSYFSSYQD 304
Query: 256 HAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDNEALW 315
HAKW IS + + C GD+NR+ Q R GG +C N ++
Sbjct: 305 HAKWCIS-----------------QKGTKNRWTCIGDLNRSPHQAFRSGGFICTQNWQIY 347
Query: 316 SLYHSIISAVEPC 328
+ ++ E C
Sbjct: 348 QAFQGLVLYYESC 360
>sp|Q9QY48|DNS2B_MOUSE Deoxyribonuclease-2-beta OS=Mus musculus GN=Dnase2b PE=2 SV=1
Length = 354
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 28/303 (9%)
Query: 22 WTLSKYSVSDPASLPGKILSPYLFNASYAPEFSADGVKILYNDQTP--IRTTVKFGHSKG 79
W S Y ++ S G+ L +L++ + + D ++YND P + + ++GH+KG
Sbjct: 69 WNKSLYLINSTRSALGRTLQ-HLYDTHNS---TNDTAYLIYNDGVPGSVNYSRQYGHAKG 124
Query: 80 LVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLGHN 139
L+V N G W++HSVP F Y YP +G YGQ +C++ SQ + + L
Sbjct: 125 LLVWNRTQGFWLIHSVPKF--PPVHGYEYPTSGRRYGQTGICITFGYSQFEEIDFQLLVL 182
Query: 140 QIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTRELGD 199
Q YS F+ + + R+ A + + + + + + F FAK+ D
Sbjct: 183 QPNIYSCFIPSTFHWKLIYMPRMCANSSSLKIPVRYLAELHSA-QGLNFVHFAKSSFYTD 241
Query: 200 DLYK-RISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGVVEFRSTHDHAK 258
D++ I+ L +LL +TW L ++C P H V N++ + ++ F S DH+K
Sbjct: 242 DIFTGWIAQKLKTHLLAQTWQKKKQELPSNCSLPYH-VYNIKSIGVTSKSYFSSRQDHSK 300
Query: 259 WTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDNEALWSLY 318
W +S A + C GD+NR+ Q RGGG +C N ++ +
Sbjct: 301 WCVSIKGS-----------------ANRWTCIGDLNRSLHQALRGGGFICTKNHYIYQAF 343
Query: 319 HSI 321
H +
Sbjct: 344 HKL 346
>sp|P34508|CRN6_CAEEL Cell death-related nuclease 6 OS=Caenorhabditis elegans GN=crn-6
PE=2 SV=3
Length = 378
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 132/278 (47%), Gaps = 25/278 (8%)
Query: 61 LYNDQTPIRT--TVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQN 118
+YND+ P T + GH+KG+ V + G W++HS+P F S+ + +P YGQ
Sbjct: 98 MYNDEWPDSTIWSNSSGHAKGVTVFDQYTGFWMIHSIPKF--PSKDMFRFPSNAHYYGQM 155
Query: 119 FLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQST 178
+C+S N L ++ L + + Y L FP L+++ EY S +
Sbjct: 156 GICISYNTVSLATIAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPP-LTSTK 214
Query: 179 IFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNGPG---RLRTDCESPAH 234
+ F FAKT E G DLY + L ++ VETW + G L + C+ P H
Sbjct: 215 VLKSLGGQHFRHFAKTGEWGKDLYSDFVGPTLKSSIKVETWNHQSGDEYNLPSVCD-PNH 273
Query: 235 --EVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGD 292
M+ + + L +++ S DH+K+ +++ S+ + +VC GD
Sbjct: 274 VQSTMSAKYIRLPYAIDYSSYEDHSKFVVAY-------------SESSSKPPIPYVCIGD 320
Query: 293 INRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEPCPR 330
INR Q+ RGGG++CI ++ + + +IIS PC +
Sbjct: 321 INRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCTK 358
>sp|Q2T8B0|DNS2_BURTA Putative deoxyribonuclease-2 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=BTH_II0389 PE=3 SV=1
Length = 350
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 113/265 (42%), Gaps = 35/265 (13%)
Query: 60 ILYNDQTPIRTT----VKFGHSKGLVVGN--SRGGIWIVHSVPHFVDDSQTSYTYPHTGL 113
ILYND+ P GH+KG++ + S +W++HS P + S P
Sbjct: 80 ILYNDEMPADANRSNNATLGHTKGVIAFDIASSSALWLLHSWPKYASPSVPGVPTP---- 135
Query: 114 MYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDN 173
+YGQ FLCLSL+ + + + +Q + + G P A + GD+
Sbjct: 136 LYGQTFLCLSLDLATAGKLAAQMALHQQPQVYLPRTGGLDHTSPLYALTQPLNASAPGDS 195
Query: 174 FFQSTIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNG--PGRLRTDCE 230
S F +PF AK R+ G D + + L ++ VETW G P L +D
Sbjct: 196 --DSLDFKTRGGVPFKVIAKNRKWGKDFWNDLVGPTLKADMYVETWIRGKIPPVLDSDGV 253
Query: 231 SPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCN 290
+++ ++ L + T DHAKW I+ TD ++VC
Sbjct: 254 HKTYDIKFIDLRKLGAPWAWPETQDHAKWGIT-----------------TTD---NWVCV 293
Query: 291 GDINRAEDQLKRGGGSVCIDNEALW 315
GDINR Q KRGGG++ + LW
Sbjct: 294 GDINRMVTQEKRGGGTIAFQDPKLW 318
>sp|Q63IT3|DNS2_BURPS Putative deoxyribonuclease-2 OS=Burkholderia pseudomallei (strain
K96243) GN=BPSS1983 PE=3 SV=1
Length = 350
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 35/277 (12%)
Query: 60 ILYNDQTPIRT----TVKFGHSKGLVVGN--SRGGIWIVHSVPHFVDDSQTSYTYPHTGL 113
ILYND+ P GH+KG++ + S +W++HS P + S P
Sbjct: 80 ILYNDEMPADADRSNNATLGHTKGVIAFDIASNSALWLLHSWPKYTSPSAPGVPTP---- 135
Query: 114 MYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDN 173
+YGQ FLC+SL+ + + +Q + +AG P + GD+
Sbjct: 136 LYGQTFLCVSLDLETAGKIAAQMALHQQPQVYLPRTAGLDHASPLYTLTQPLNASAPGDS 195
Query: 174 FFQSTIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNG--PGRLRTDCE 230
S F PF AK R+ G D + + L ++ VETW G P L +D
Sbjct: 196 --DSLDFKTRGGAPFKVIAKNRKWGKDFWNDLVGPTLKADMDVETWIRGKIPPILDSDGV 253
Query: 231 SPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCN 290
+++ ++ L + T DHAKW I+ ++ +VC
Sbjct: 254 HKTYDIKFIDLRKLGAPWAWPETQDHAKWGITTTDD--------------------WVCV 293
Query: 291 GDINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEP 327
GDINR Q KRGGG++ + LW V P
Sbjct: 294 GDINRMVTQEKRGGGTIAFQDPQLWKALSQTDLIVPP 330
>sp|Q3JJK4|DNS2_BURP1 Putative deoxyribonuclease-2 OS=Burkholderia pseudomallei (strain
1710b) GN=BURPS1710b_A1091 PE=3 SV=1
Length = 350
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 35/277 (12%)
Query: 60 ILYNDQTPIRT----TVKFGHSKGLVVGN--SRGGIWIVHSVPHFVDDSQTSYTYPHTGL 113
ILYND+ P GH+KG++ + S +W++HS P + S P
Sbjct: 80 ILYNDEMPADADRSNNATLGHTKGVIAFDIASNSALWLLHSWPKYTSPSAPGVPTP---- 135
Query: 114 MYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDN 173
+YGQ FLC+SL+ + + +Q + +AG P + GD+
Sbjct: 136 LYGQTFLCVSLDLETAGKIAAQMALHQQPQVYLPRTAGLDHASPLYTLTQPLNASAPGDS 195
Query: 174 FFQSTIFTRFNQIPFHTFAKTRELGDDLYKR-ISDNLNVNLLVETWPNG--PGRLRTDCE 230
S F PF AK R+ G D + + L ++ VETW G P L +D
Sbjct: 196 --DSLDFKTRGGAPFKVIAKNRKWGKDFWNDLVGPTLKADMDVETWIRGKIPPILDSDGV 253
Query: 231 SPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCN 290
+++ ++ L + T DHAKW I+ ++ +VC
Sbjct: 254 HKTYDIKFIDLRKLGAPWAWPETQDHAKWGITTTDD--------------------WVCV 293
Query: 291 GDINRAEDQLKRGGGSVCIDNEALWSLYHSIISAVEP 327
GDINR Q KRGGG++ + LW V P
Sbjct: 294 GDINRMVTQEKRGGGTIAFQDPQLWKALSQTDLIVPP 330
>sp|A1SMP3|MDH_NOCSJ Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614)
GN=mdh PE=3 SV=1
Length = 328
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 135 NLGHNQIYKYSTFLSAGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKT 194
+G++ +++ ++ G++ + L + A G + + F A
Sbjct: 16 QIGYSLLFRLASGSLLGDRPIELRLLEITPALKALEG-------VVMELDDCAFPNLAGV 68
Query: 195 RELGDDLYKRISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGV 247
++GDD ++I D +N+ LLV P GPG R D S + +G AL+ V
Sbjct: 69 -QIGDD-AEQIFDGVNLALLVGARPRGPGMERGDLLSANGAIFTAQGKALNKV 119
>sp|Q47IE0|SYD_DECAR Aspartate--tRNA ligase OS=Dechloromonas aromatica (strain RCB)
GN=aspS PE=3 SV=1
Length = 599
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 53 FSADGVKILYNDQTPIRTTVKFGHSKGLVVGNSRGGIWIVHSVPHF-VDDSQTSYTYPH 110
F AD KI+ + +R +K GH KG V G +W++ P F DD +T H
Sbjct: 396 FGADKAKIVNDALGALR--IKIGHEKGFVTGAKWAPLWVI-DFPMFEYDDESKRWTACH 451
>sp|B2HRH5|MDH_MYCMM Malate dehydrogenase OS=Mycobacterium marinum (strain ATCC BAA-535
/ M) GN=mdh PE=3 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 196 ELGDDLYKRISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGV 247
E+G D K I D N+ LLV P GPG R+D + +G AL+ V
Sbjct: 70 EIGSDANK-IFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEV 120
>sp|A0PVV1|MDH_MYCUA Malate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99)
GN=mdh PE=3 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 196 ELGDDLYKRISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGV 247
E+G D K I D N+ LLV P GPG R+D + +G AL+ V
Sbjct: 70 EIGSDANK-IFDGANLALLVGARPRGPGMERSDLLEANGAIFTAQGKALNEV 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,083,082
Number of Sequences: 539616
Number of extensions: 5444288
Number of successful extensions: 10421
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10345
Number of HSP's gapped (non-prelim): 21
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)