Query psy652
Match_columns 331
No_of_seqs 131 out of 356
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:07:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03265 DNase_II: Deoxyribonu 100.0 4E-86 8.6E-91 637.5 27.9 299 2-328 15-322 (322)
2 KOG3825|consensus 100.0 3.5E-76 7.5E-81 545.3 15.6 269 2-298 34-316 (316)
3 KOG1654|consensus 20.1 1.2E+02 0.0026 25.2 3.1 34 29-66 80-113 (116)
4 smart00155 PLDc Phospholipase 18.9 1.3E+02 0.0028 18.0 2.4 23 253-296 3-25 (28)
5 PTZ00380 microtubule-associate 18.4 1.1E+02 0.0023 25.8 2.6 28 35-66 81-108 (121)
6 PHA02672 ORF110 EEV glycoprote 16.7 1.1E+02 0.0024 26.8 2.3 23 72-94 89-111 (166)
7 KOG2451|consensus 15.0 1.1E+02 0.0025 30.9 2.2 65 198-296 437-503 (503)
8 PRK13912 nuclease NucT; Provis 14.9 3.6E+02 0.0079 23.5 5.3 51 252-323 117-168 (177)
9 PF08972 DUF1902: Domain of un 13.9 1.4E+02 0.0031 21.5 1.9 14 81-94 5-18 (54)
10 PF09634 DUF2025: Protein of u 11.0 1.9E+02 0.0042 23.2 2.0 24 76-99 14-38 (106)
No 1
>PF03265 DNase_II: Deoxyribonuclease II; InterPro: IPR004947 Deoxyribonuclease II (3.1.22.1 from EC) hydrolyses DNA under acidic conditions with a preference for double-stranded DNA. It catalyses the endonucleolytic cleavage of DNA to 3'-phosphomononucleotide and 3'-phosphooligonucleotide end-products. The enzyme may play a role in apoptosis. This family also includes hypothetical proteins from Caenorhabditis elegans.; GO: 0004531 deoxyribonuclease II activity, 0006259 DNA metabolic process
Probab=100.00 E-value=4e-86 Score=637.51 Aligned_cols=299 Identities=37% Similarity=0.698 Sum_probs=284.6
Q ss_pred ccccCCC------CCccEEEEcCCcccccccccccCCCCchHHhhhhhhhcCCCCCCCCCCeEEEEEcCCCCCCC-CCcc
Q psy652 2 LLGSESR------QERDKQSTVNTLQWTLSKYSVSDPASLPGKILSPYLFNASYAPEFSADGVKILYNDQTPIRT-TVKF 74 (331)
Q Consensus 2 ~~~~~~~------~~~y~Y~Ds~~~~w~~s~~~in~~~s~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqpp~~~-~~~~ 74 (331)
++||+|. +..|+|+||++..|+++...|++++|||++||+|+|...+. .+++|++||||||..+ ...+
T Consensus 15 ~~yKlp~~~~~~~g~~y~Y~Ds~~~~~~~~~~~i~~~~s~l~~Tl~q~~~~~~~-----~~~~~~~YNDqpp~~~~~~~~ 89 (322)
T PF03265_consen 15 FIYKLPKDKDSSNGLSYLYIDSNSGGWQLSKKNINDPNSPLARTLDQIYASSNK-----NDYYYIAYNDQPPNSTTSSSY 89 (322)
T ss_pred EEEECCCCCCCCCCcceEEEcCCchhhccchhhccCCCCchHHHHHHhhhccCC-----CceEEEEEeCCCCCCCccccc
Confidence 7999999 99999999999999999999999999999999999964333 5799999999999877 8899
Q ss_pred cceeEEEEecCCceeEEEeccCCCCCCCC-CCcccCCCCcccccEEEEEeeCcccHHHHHHHHhcccceeecccCCCCcc
Q psy652 75 GHSKGLVVGNSRGGIWIVHSVPHFVDDSQ-TSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLSAGNK 153 (331)
Q Consensus 75 gHsKGvl~~~~~~G~wlvHS~P~FP~~~~-~~y~~P~~~~~~GQ~FlCiS~~~~~l~~Ia~~L~~~~p~iY~~~iP~~~~ 153 (331)
||+||||+||.++||||+||+|+||.... ..|.||+++..|||||||+|+++++|+.||++|++++|+||..++|..++
T Consensus 90 gHsKGv~~~d~~~G~wl~HS~P~FP~~~~~~~y~~p~~~~~~gQ~flC~s~~~~~l~~ia~~l~~~~p~iy~~~~p~~~~ 169 (322)
T PF03265_consen 90 GHSKGVLMFDKESGFWLIHSVPKFPNLPSKGAYSYPSSGTKYGQHFLCISFSYSQLNKIAKQLIYNYPYIYSSNIPESFA 169 (322)
T ss_pred cccchheecccCceEEEEecCCCCCCCccccCccCCCccccCccEEEEEECCHHHHHHHHHHHhhcCceeeeccCchhhh
Confidence 99999999999999999999999999865 56999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHcCCcccCCCCcceeeEEEecCCceEEEEEecCcccccchh-hchhhcCCceEEEeecCCCCCCCCCCCCC
Q psy652 154 GVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTDCESP 232 (331)
Q Consensus 154 ~~~p~L~~l~~~~~~~~~p~~~~~~~l~t~~g~~f~~faK~~~~~~Dly~-~va~~lk~~l~VetW~~g~~~lps~C~~~ 232 (331)
.++|+|.+|++++....+| +...+.|+|++|.+|.+|||++.|+.|||+ +||++|+++|+||||+++.+.+|+.|...
T Consensus 170 ~~~p~L~~l~~~~~~~~~~-~~~~~~l~T~~g~~f~~faK~~~~~~DiY~~~va~~l~~~l~vetW~~~~~~l~s~c~~~ 248 (322)
T PF03265_consen 170 TKFPNLQNLINGKTISSPP-FNSSTTLTTKGGVKFKSFAKSSKFGKDIYSDLVAPTLKSSLFVETWRNGAGNLPSDCSSP 248 (322)
T ss_pred hccHHHHHHhcCCccCCCc-ceeeeEEEecCCceEEEEEecccccccccchhhhHhhcCCeEEEeccccCCcCCCcCCCC
Confidence 9999999999999998888 999999999999999999999999999999 99999999999999999999999999988
Q ss_pred CceeEeeeeEeeCCcccccCCCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCchhhcccccEEEEeeCH
Q psy652 233 AHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDNE 312 (331)
Q Consensus 233 ~~~v~nv~~i~~~~~~~~~~~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~~sQ~~RGGG~vC~~n~ 312 (331)
++++||..|.+++ ..|++++|||||+|+.. + +||||||+||+.+|.+||||++||+|+
T Consensus 249 -~~~~~~~~i~~~~-~~~~~~~DHSKwaVs~~---~-----------------~~~CigD~Nr~~~Q~~rGGg~vC~~n~ 306 (322)
T PF03265_consen 249 -YKVNNVSPISLPG-SQFKSSKDHSKWAVSDN---K-----------------NWFCIGDINRQKSQEKRGGGAVCIKNP 306 (322)
T ss_pred -ceEeecceeEeCC-ccccccCCeEEEEEecC---C-----------------CEEEEeCCCCchhhccCCceEEEEECH
Confidence 8999999999984 55999999999999943 3 999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCC
Q psy652 313 ALWSLYHSIISAVEPC 328 (331)
Q Consensus 313 ~l~~~f~~~v~~~~~C 328 (331)
.||++|+++|+++|+|
T Consensus 307 ~l~~~f~~~v~~~~~C 322 (322)
T PF03265_consen 307 NLWKAFNRMVANYEPC 322 (322)
T ss_pred HHHHHHHHHHhhccCC
Confidence 9999999999999999
No 2
>KOG3825|consensus
Probab=100.00 E-value=3.5e-76 Score=545.30 Aligned_cols=269 Identities=33% Similarity=0.593 Sum_probs=250.1
Q ss_pred ccccCCC----------CCccEEEEcCCcccccccccccCCCCchHHhhhhhhhcCCCCCCCCCCeEEEEEcCCCCCCC-
Q psy652 2 LLGSESR----------QERDKQSTVNTLQWTLSKYSVSDPASLPGKILSPYLFNASYAPEFSADGVKILYNDQTPIRT- 70 (331)
Q Consensus 2 ~~~~~~~----------~~~y~Y~Ds~~~~w~~s~~~in~~~s~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqpp~~~- 70 (331)
.|||+|. ...|+|+|+++..|++++..|+++++++++||+|+|+.+. ...+++||||++|+..
T Consensus 34 ~~YKLP~~~~~~~~~~sG~~~~Y~d~~~~~w~~~~~~i~d~~~av~~tLqq~y~s~~------s~~~~~mYnD~~p~~t~ 107 (316)
T KOG3825|consen 34 VVYKLPKLWGHGDPISSGLEYLYFDVNNKDWRLSGQLINDPNSAVGYTLQQLYDSNM------STTFSLMYNDEWPDPTK 107 (316)
T ss_pred eeeechhhhCCCCcccCceeEEEEecccCCcccchhhcCCcchhhHHhhhHhhccCc------cceeeeecccCCCCCcc
Confidence 5788884 4579999999988999999999999999999999998543 3589999999977665
Q ss_pred -CCcccceeEEEEecCCceeEEEeccCCCCCCCCCCcccCCCCcccccEEEEEeeCcccHHHHHHHHhcccceeecccCC
Q psy652 71 -TVKFGHSKGLVVGNSRGGIWIVHSVPHFVDDSQTSYTYPHTGLMYGQNFLCLSLNASQLDSVGDNLGHNQIYKYSTFLS 149 (331)
Q Consensus 71 -~~~~gHsKGvl~~~~~~G~wlvHS~P~FP~~~~~~y~~P~~~~~~GQ~FlCiS~~~~~l~~Ia~~L~~~~p~iY~~~iP 149 (331)
+..+||+|||++||..+|||||||||+||+. ..|+||.++..|||++||+||+..++++||++|.|++|.+|..+||
T Consensus 108 ~~~s~GHaKGv~~~d~~tgfWliHSVP~FP~~--~~y~yP~s~~~ygQs~lCis~~~~~l~~i~~ql~y~~p~~Y~~nlp 185 (316)
T KOG3825|consen 108 WSDSRGHAKGVLLFDGTTGFWLIHSVPKFPSI--DMYSYPSSAHYYGQSGLCISFKYAQLEKIGQQLFYNNPFVYQFNLP 185 (316)
T ss_pred ccCCCCccCceEEEecCccEEEEEecCCCCCc--cccCCCCChhhcccceEEEEEehHHHHHHhhheeEecCceEEeccc
Confidence 5558999999999999999999999999976 5899999999999999999999999999999999999999999999
Q ss_pred CCccCccchHHHHHcCCcccCCCCcceeeEEEecCCceEEEEEecCcccccchh-hchhhcCCceEEEeecCCCCCCCCC
Q psy652 150 AGNKGVFPTLARVIAGEYATSGDNFFQSTIFTRFNQIPFHTFAKTRELGDDLYK-RISDNLNVNLLVETWPNGPGRLRTD 228 (331)
Q Consensus 150 ~~~~~~~p~L~~l~~~~~~~~~p~~~~~~~l~t~~g~~f~~faK~~~~~~Dly~-~va~~lk~~l~VetW~~g~~~lps~ 228 (331)
..++++||.|.+|+++++...+| +.+..+|+|++|.+|++|||+++|++|||. |||++||++|+||||+++.+.||++
T Consensus 186 ~~faqefp~L~ql~~~q~~se~P-~~~~~~L~S~~Gq~F~~FAKs~~f~~Dlya~~va~~Lkt~L~vEtW~~~~g~LPs~ 264 (316)
T KOG3825|consen 186 TSFAQEFPDLEQLCAGQYRSEIP-FQSSKTLKSLQGQKFRHFAKSGEFGDDLYADWVAPTLKTSLLVETWRRGSGDLPSN 264 (316)
T ss_pred hhHhhhcccHHHHhccCCccCCC-ceeeeEeeeccChhhhhhhcccccchHHHHHHHhhhhcceeeehhhhcccCCCCcc
Confidence 99999999999999999999999 999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCceeEeeeeEeeCCcccccCCCceeeeeeecCCCCCCCCcccccccccCCCCCc-eEEecCCCCchh
Q psy652 229 CESPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDSISKHKTDGARH-FVCNGDINRAED 298 (331)
Q Consensus 229 C~~~~~~v~nv~~i~~~~~~~~~~~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~-~vCigD~NR~~s 298 (331)
|+.+ +||+||+.|++++-.-|++++||||||||.. ++ .+ |+|||||||+++
T Consensus 265 Cs~~-~hv~nv~sik~~~~s~FsS~qDHSKw~vS~~---gt---------------k~~wvCiGDiNR~~~ 316 (316)
T KOG3825|consen 265 CSLP-YHVLNVKSIKVPRLSYFSSTQDHSKWAVSPS---GT---------------KPRWVCIGDINRQPS 316 (316)
T ss_pred CCCh-hhhhhhheeeccccccccccccchheeeccC---CC---------------CCceEEEeeccCCCC
Confidence 9999 9999999999997445899999999999954 43 25 999999999874
No 3
>KOG1654|consensus
Probab=20.11 E-value=1.2e+02 Score=25.22 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=23.7
Q ss_pred ccCCCCchHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 29 VSDPASLPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 29 in~~~s~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+|...-+-+.|+.++|....+. +...||.|.+|.
T Consensus 80 Vn~~~p~ts~~ms~~Ye~~kde----DgFLYm~Ys~e~ 113 (116)
T KOG1654|consen 80 VNNTSPPTSATMSALYEEEKDE----DGFLYMTYSGEN 113 (116)
T ss_pred EcCcCCcchhhHHHHHHhhccc----CcEEEEEecccc
Confidence 4444334588899999865431 338999999986
No 4
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=18.89 E-value=1.3e+02 Score=18.01 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=17.1
Q ss_pred CCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCc
Q psy652 253 THDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRA 296 (331)
Q Consensus 253 ~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~ 296 (331)
...|+|..|... .++.+|-.|-.
T Consensus 3 ~~~H~K~~v~D~---------------------~~~~iGs~N~~ 25 (28)
T smart00155 3 GVLHTKLMIVDD---------------------EIAYIGSANLD 25 (28)
T ss_pred CcEEeEEEEEcC---------------------CEEEEeCccCC
Confidence 356999988864 58888887743
No 5
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=18.35 E-value=1.1e+02 Score=25.82 Aligned_cols=28 Identities=0% Similarity=-0.183 Sum_probs=21.3
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+.+.|+.++|+..++. +...||.|.+|-
T Consensus 81 ~~s~~mg~lYe~~KDe----DGFLYi~Ys~e~ 108 (121)
T PTZ00380 81 AVTATVGDIADACKRD----DGFLYVSVRTEQ 108 (121)
T ss_pred CccchHHHHHHHhcCC----CCeEEEEEcccc
Confidence 4567899999876441 349999999985
No 6
>PHA02672 ORF110 EEV glycoprotein; Provisional
Probab=16.71 E-value=1.1e+02 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred CcccceeEEEEecCCceeEEEec
Q psy652 72 VKFGHSKGLVVGNSRGGIWIVHS 94 (331)
Q Consensus 72 ~~~gHsKGvl~~~~~~G~wlvHS 94 (331)
...-|-|||+..-.+.-||+-|-
T Consensus 89 pn~~hLKgVm~lt~~r~FW~thh 111 (166)
T PHA02672 89 PNTMLLKGIMFLTGERSFWMTHH 111 (166)
T ss_pred CCHhHhhheeeEecccEEEEEcc
Confidence 56789999999999999999996
No 7
>KOG2451|consensus
Probab=15.00 E-value=1.1e+02 Score=30.88 Aligned_cols=65 Identities=25% Similarity=0.404 Sum_probs=39.4
Q ss_pred cccchh--hchhhcCCceEEEeecCCCCCCCCCCCCCCceeEeeeeEeeCCcccccCCCceeeeeeecCCCCCCCCcccc
Q psy652 198 GDDLYK--RISDNLNVNLLVETWPNGPGRLRTDCESPAHEVMNVEGVALSGVVEFRSTHDHAKWTISFGNETRSNLNQDS 275 (331)
Q Consensus 198 ~~Dly~--~va~~lk~~l~VetW~~g~~~lps~C~~~~~~v~nv~~i~~~~~~~~~~~~DHSKWavs~~~~~~~~~~~~~ 275 (331)
..|+=. -|++.|...|.= -| ..|-|.|..+ +.|.-+-.-..+-||.+|..+. ..
T Consensus 437 s~~~s~~~rVae~LEvGmVG---vN--eglis~~~~p-----------FGGVKeSG~GREgskyGidey~--~i------ 492 (503)
T KOG2451|consen 437 SNNLSRLFRVAEALEVGMVG---VN--EGLISDAEAP-----------FGGVKESGFGREGSKYGIDEYL--VI------ 492 (503)
T ss_pred ccCHHHHHHHHHHHhcceee---cc--cceecccccC-----------cCCccccccCccccccchhhhh--hh------
Confidence 445555 477777776653 11 1233444433 2232233446778999999873 32
Q ss_pred cccccCCCCCceEEecCCCCc
Q psy652 276 ISKHKTDGARHFVCNGDINRA 296 (331)
Q Consensus 276 ~~~~~~~~~~~~vCigD~NR~ 296 (331)
.++|+|+++|.
T Consensus 493 ----------k~icig~L~~~ 503 (503)
T KOG2451|consen 493 ----------KYICIGTLPIF 503 (503)
T ss_pred ----------heeeecCccCC
Confidence 79999999974
No 8
>PRK13912 nuclease NucT; Provisional
Probab=14.86 E-value=3.6e+02 Score=23.45 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=35.7
Q ss_pred CCCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCchhhcccccEEE-EeeCHHHHHHHHHHHh
Q psy652 252 STHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSV-CIDNEALWSLYHSIIS 323 (331)
Q Consensus 252 ~~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~~sQ~~RGGG~v-C~~n~~l~~~f~~~v~ 323 (331)
....|+|..|-.. .++.+|-.|-..+=..+--... =+.++.+.+.|.+...
T Consensus 117 ~~~~H~K~~viD~---------------------~~~~iGS~N~t~~s~~~N~E~~lii~d~~~~~~~~~~F~ 168 (177)
T PRK13912 117 YGIMHQKVAIIDD---------------------KIVVLGSANWSKNAFENNYEVLLITDDTETILKAKEYFQ 168 (177)
T ss_pred ccccceeEEEEcC---------------------CEEEEeCCCCChhHhccCCceEEEECCHHHHHHHHHHHH
Confidence 3568999998853 6899999998865343333333 3588888888876544
No 9
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=13.94 E-value=1.4e+02 Score=21.53 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=12.0
Q ss_pred EEecCCceeEEEec
Q psy652 81 VVGNSRGGIWIVHS 94 (331)
Q Consensus 81 l~~~~~~G~wlvHS 94 (331)
..||.+.|+|+-+|
T Consensus 5 a~wD~EA~VWvA~s 18 (54)
T PF08972_consen 5 AFWDEEAGVWVATS 18 (54)
T ss_dssp EEEETTTTEEEEE-
T ss_pred EEEcCCCCEEEEec
Confidence 57999999999999
No 10
>PF09634 DUF2025: Protein of unknown function (DUF2025); InterPro: IPR018595 This protein is produced from gene PA1123 in Pseudomonas. It appears to be present in the biofilm layer and may be a lipoprotein. It contains three alpha helices and six beta strands and is thought to be monomeric.; PDB: 2HG6_A.
Probab=11.03 E-value=1.9e+02 Score=23.19 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=14.8
Q ss_pred ceeEEEEecCCceeEEEe-ccCCCC
Q psy652 76 HSKGLVVGNSRGGIWIVH-SVPHFV 99 (331)
Q Consensus 76 HsKGvl~~~~~~G~wlvH-S~P~FP 99 (331)
.-||+|.|+...|-||+. |--.|-
T Consensus 14 qLkGFVGfn~KtG~~ivRFSEDsFG 38 (106)
T PF09634_consen 14 QLKGFVGFNRKTGQHIVRFSEDSFG 38 (106)
T ss_dssp S---EEEEETTTTEEEEES-GGG-S
T ss_pred HhcccccccccCceEEEEecccccC
Confidence 358999999999999984 334443
Done!