Query psy652
Match_columns 331
No_of_seqs 131 out of 356
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:08:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wv8_A TT1413, hypothetical pr 10.9 1.4E+02 0.0047 21.8 2.2 15 80-94 7-21 (73)
2 3m95_A Autophagy related prote 8.2 1.7E+02 0.0058 23.5 2.0 28 35-66 94-121 (125)
3 1byr_A Protein (endonuclease); 8.1 6.6E+02 0.022 19.2 5.7 50 253-323 91-142 (155)
4 1eo6_A GATE-16, golgi-associat 6.8 2.3E+02 0.008 22.2 2.2 28 35-66 86-113 (117)
5 2rkl_A Vacuolar protein sortin 6.6 41 0.0014 23.2 -2.1 14 250-263 17-30 (53)
6 3rui_B Autophagy-related prote 6.5 2E+02 0.0069 22.7 1.6 28 35-66 88-115 (118)
7 2hg6_A Hypothetical protein; s 6.4 2.4E+02 0.0081 22.2 1.9 24 76-99 36-60 (128)
8 3h9d_A ATG8, microtubule-assoc 6.3 2E+02 0.0068 22.8 1.5 28 35-66 89-116 (119)
9 1wz3_A Autophagy 12B, ATG12B, 5.9 1.9E+02 0.0067 21.9 1.2 27 35-66 67-93 (96)
10 1v0w_A Phospholipase D; hydrol 5.9 7.4E+02 0.025 23.7 5.8 49 252-323 436-484 (506)
No 1
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=10.87 E-value=1.4e+02 Score=21.83 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=12.9
Q ss_pred EEEecCCceeEEEec
Q psy652 80 LVVGNSRGGIWIVHS 94 (331)
Q Consensus 80 vl~~~~~~G~wlvHS 94 (331)
.+.||.+.|+|+-+|
T Consensus 7 ~~~~Deeagv~vA~s 21 (73)
T 1wv8_A 7 QALWDGEAGVWVAES 21 (73)
T ss_dssp EEEEETTTTEEEEEC
T ss_pred EEEEeCCCCEEEEEC
Confidence 467899999999998
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=8.17 E-value=1.7e+02 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=20.3
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...|+.++|....+. +...||.|.++.
T Consensus 94 s~s~~m~~lY~~~kde----DGfLY~~Ys~e~ 121 (125)
T 3m95_A 94 PTSATMGSLYQEHHDE----DFFLYIAFSDEN 121 (125)
T ss_dssp CTTSBHHHHHHHHCCT----TSCEEEEEESSS
T ss_pred CccchHHHHHHHcCCC----CCeEEEEecCcc
Confidence 5567888888765321 348999999986
No 3
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=8.08 E-value=6.6e+02 Score=19.17 Aligned_cols=50 Identities=22% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCchh-hcccccEEEEeeC-HHHHHHHHHHHh
Q psy652 253 THDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAED-QLKRGGGSVCIDN-EALWSLYHSIIS 323 (331)
Q Consensus 253 ~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~~s-Q~~RGGG~vC~~n-~~l~~~f~~~v~ 323 (331)
..-|+|..|-.. .++.+|-.|=... ....-...+-+.+ +.+.+.|.+...
T Consensus 91 ~~~H~K~~iiD~---------------------~~~~iGS~N~~~~~~~~n~E~~~~i~~~~~l~~~~~~~f~ 142 (155)
T 1byr_A 91 PIQHDKVIIVDN---------------------VTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQ 142 (155)
T ss_dssp SCCCCCEEEETT---------------------TEEEEESCCBSHHHHHTSCEEEEEEESCHHHHHHHHHHHH
T ss_pred ccccceEEEECC---------------------CEEEEECCCCCccccccCcccEEEEcCcHHHHHHHHHHHH
Confidence 468999999854 6888998886643 2222234455666 688887776544
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=6.75 E-value=2.3e+02 Score=22.18 Aligned_cols=28 Identities=4% Similarity=0.013 Sum_probs=19.5
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...||.++|....+. +...||.|.+++
T Consensus 86 ~~~~~m~~LY~~~kd~----DGfLyi~Ys~~~ 113 (117)
T 1eo6_A 86 QSSLTMGQLYEKEKDE----DGFLYVAYSGEN 113 (117)
T ss_dssp CTTSBHHHHHHHHCCT----TSCEEEEEECCC
T ss_pred CccchHHHHHHHhCCC----CCEEEEEEeCCc
Confidence 4566788888754321 348999999886
No 5
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=6.63 E-value=41 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=10.0
Q ss_pred ccCCCceeeeeeec
Q psy652 250 FRSTHDHAKWTISF 263 (331)
Q Consensus 250 ~~~~~DHSKWavs~ 263 (331)
+...+-|+|||||-
T Consensus 17 i~~AqK~aK~AiSA 30 (53)
T 2rkl_A 17 IEQIQKLAKYAISA 30 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44456689999985
No 6
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=6.52 E-value=2e+02 Score=22.73 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=19.3
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...|+.++|....+. +...||.|.+++
T Consensus 88 ~~~~~m~~lY~~~kde----DGfLyv~Ys~~~ 115 (118)
T 3rui_B 88 PTAALMSAIYQEHKDK----DGFLYVTYSGEN 115 (118)
T ss_dssp CTTSBHHHHHHHHCCT----TSCEEEEEEECC
T ss_pred CccchHHHHHHHcCCC----CCeEEEEEeccc
Confidence 4456888888765331 348999998885
No 7
>2hg6_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa} SCOP: d.364.1.1
Probab=6.40 E-value=2.4e+02 Score=22.23 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=17.9
Q ss_pred ceeEEEEecCCceeEEEe-ccCCCC
Q psy652 76 HSKGLVVGNSRGGIWIVH-SVPHFV 99 (331)
Q Consensus 76 HsKGvl~~~~~~G~wlvH-S~P~FP 99 (331)
--||+|.|+...|-+|+- |--.|-
T Consensus 36 qLkGFVGfn~KtG~yIvRFSEDsFG 60 (128)
T 2hg6_A 36 ALKGFVGFNRKTGRYIVRFSEDSFG 60 (128)
T ss_dssp SCCCEEEEETTTTEEEEESCGGGCS
T ss_pred HhcccccccccCceEEEEecccccC
Confidence 468999999999999884 333443
No 8
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=6.28 E-value=2e+02 Score=22.79 Aligned_cols=28 Identities=4% Similarity=-0.026 Sum_probs=19.5
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...|+.++|....+. +...||.|.+++
T Consensus 89 ~~~~~m~~lY~~~kd~----DGfLyv~Ys~e~ 116 (119)
T 3h9d_A 89 PSSAQMADIYSKYKDE----DGFLYMKYSGEA 116 (119)
T ss_dssp CTTSBHHHHHHHHCCT----TSCEEEEEECC-
T ss_pred CccchHHHHHHHcCCC----CCeEEEEEeccc
Confidence 4556888888765321 348999999986
No 9
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=5.94 E-value=1.9e+02 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=18.7
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...|+.++|....+ +...||.|.+++
T Consensus 67 s~d~~m~~LY~~~kd-----DGfLyi~Ys~~~ 93 (96)
T 1wz3_A 67 NPDESVIDLYNNFGF-----DGKLVVNYACSM 93 (96)
T ss_dssp CTTSBHHHHHHHHCB-----TTBEEEEEESCS
T ss_pred ChhhHHHHHHHHhCC-----CCEEEEEEeCCc
Confidence 445677777765433 347899999886
No 10
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=5.87 E-value=7.4e+02 Score=23.71 Aligned_cols=49 Identities=10% Similarity=-0.037 Sum_probs=36.5
Q ss_pred CCCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCchhhcccccEEEEeeCHHHHHHHHHHHh
Q psy652 252 STHDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQLKRGGGSVCIDNEALWSLYHSIIS 323 (331)
Q Consensus 252 ~~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~~sQ~~RGGG~vC~~n~~l~~~f~~~v~ 323 (331)
...-|+|..|..+ .++.+|-.|=...-. + .-.+.+.++.+.+.+.+...
T Consensus 436 ~~~lHaK~~vvD~---------------------~~~~vGS~N~d~rS~-~-E~~l~i~~~~~a~~l~~~f~ 484 (506)
T 1v0w_A 436 PYAQHHKLVSVDS---------------------STFYIGSKNLYPSWL-Q-DFGYIVESPEAAKQLDAKLL 484 (506)
T ss_dssp CCCBCCEEEEETT---------------------TEEEEESCCSSCCCS-B-CEEEEEECHHHHHHHHHHTH
T ss_pred cccceEEEEEECC---------------------cEEEEeCCCCCCcch-h-hceeEecCHHHHHHHHHHHH
Confidence 3479999999854 699999999755433 3 66677888888887776654
Done!