Query psy652
Match_columns 331
No_of_seqs 131 out of 356
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 20:08:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy652.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/652hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wv8a1 d.304.1.1 (A:2-72) Hyp 40.4 7.6 0.00055 26.7 2.3 14 81-94 7-20 (71)
2 d1twfc2 d.181.1.1 (C:42-172) R 12.7 25 0.0018 26.2 0.6 13 248-260 118-130 (131)
3 d1byra_ d.136.1.1 (A:) Nucleas 9.5 2E+02 0.015 20.4 5.1 50 253-323 90-141 (152)
4 d1eo6a_ d.15.1.3 (A:) Golgi-as 9.3 68 0.0049 23.5 2.0 27 36-66 87-113 (116)
5 d2hg6a1 d.364.1.1 (A:1-106) Hy 9.1 71 0.0052 22.7 1.9 18 76-93 14-31 (106)
6 d1b24a1 d.95.2.1 (A:7-99) DNA 9.0 1E+02 0.0076 21.1 2.7 20 307-326 74-93 (93)
7 d3d32a1 d.15.1.3 (A:1-118) GAB 8.8 70 0.0051 23.5 1.9 28 35-66 88-115 (118)
8 d2diia1 a.240.1.1 (A:8-55) TFI 6.3 1.2E+02 0.0085 18.7 1.7 15 310-324 18-32 (48)
9 d1q32a1 d.136.1.3 (A:79-293) T 5.7 88 0.0064 25.3 1.1 12 87-98 188-199 (215)
10 d1o69a_ c.67.1.4 (A:) Aminotra 5.2 1.8E+02 0.013 24.2 3.0 21 302-322 178-198 (374)
No 1
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=40.37 E-value=7.6 Score=26.65 Aligned_cols=14 Identities=21% Similarity=0.741 Sum_probs=12.9
Q ss_pred EEecCCceeEEEec
Q psy652 81 VVGNSRGGIWIVHS 94 (331)
Q Consensus 81 l~~~~~~G~wlvHS 94 (331)
.+||.+.|+|+-||
T Consensus 7 a~WD~EAgVWva~s 20 (71)
T d1wv8a1 7 ALWDGEAGVWVAES 20 (71)
T ss_dssp EEEETTTTEEEEEC
T ss_pred EEEcccCCEEEEEc
Confidence 46999999999999
No 2
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.70 E-value=25 Score=26.17 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=10.1
Q ss_pred ccccCCCceeeee
Q psy652 248 VEFRSTHDHAKWT 260 (331)
Q Consensus 248 ~~~~~~~DHSKWa 260 (331)
..-...+|||||.
T Consensus 118 a~kG~Gk~HAK~s 130 (131)
T d1twfc2 118 AKKGIAKEHAKWG 130 (131)
T ss_dssp EEEECTTTCGGGC
T ss_pred EEecccccCcEeC
Confidence 3457799999995
No 3
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=9.45 E-value=2e+02 Score=20.40 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=35.1
Q ss_pred CCceeeeeeecCCCCCCCCcccccccccCCCCCceEEecCCCCchhhc--ccccEEEEeeCHHHHHHHHHHHh
Q psy652 253 THDHAKWTISFGNETRSNLNQDSISKHKTDGARHFVCNGDINRAEDQL--KRGGGSVCIDNEALWSLYHSIIS 323 (331)
Q Consensus 253 ~~DHSKWavs~~~~~~~~~~~~~~~~~~~~~~~~~vCigD~NR~~sQ~--~RGGG~vC~~n~~l~~~f~~~v~ 323 (331)
..-|+|..|... .++++|..|-..+-. .+.=+.+...++.|.+.|.+...
T Consensus 90 ~~~H~K~~ivD~---------------------~~~~~GS~N~t~~~~~~n~e~~~~i~~~~~v~~~~~~~F~ 141 (152)
T d1byra_ 90 PIQHDKVIIVDN---------------------VTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQ 141 (152)
T ss_dssp SCCCCCEEEETT---------------------TEEEEESCCBSHHHHHTSCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccccceEEecC---------------------ceeEecccCCChHHHhcCCcceEEEEcCHHHHHHHHHHHH
Confidence 446999998854 689999999876544 33335556667888888776543
No 4
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.32 E-value=68 Score=23.53 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=19.2
Q ss_pred hHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 36 PGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 36 l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
...||.++|+...+. +...||.|++|-
T Consensus 87 ~s~~i~~lY~~~Kde----DGfLYi~Ys~en 113 (116)
T d1eo6a_ 87 SSLTMGQLYEKEKDE----DGFLYVAYSGEN 113 (116)
T ss_dssp TTSBHHHHHHHHCCT----TSCEEEEEECCC
T ss_pred hhhhHHHHHHHcCCC----CcEEEEEEeccc
Confidence 357888888765331 458999999884
No 5
>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.10 E-value=71 Score=22.68 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=15.5
Q ss_pred ceeEEEEecCCceeEEEe
Q psy652 76 HSKGLVVGNSRGGIWIVH 93 (331)
Q Consensus 76 HsKGvl~~~~~~G~wlvH 93 (331)
.-||+|.|+...|-||+.
T Consensus 14 qL~GFVGfn~K~G~~ivR 31 (106)
T d2hg6a1 14 ALKGFVGFNRKTGRYIVR 31 (106)
T ss_dssp SCCCEEEEETTTTEEEEE
T ss_pred HhcccccccccCceEEEE
Confidence 358999999999999884
No 6
>d1b24a1 d.95.2.1 (A:7-99) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=8.95 E-value=1e+02 Score=21.14 Aligned_cols=20 Identities=5% Similarity=0.413 Sum_probs=16.2
Q ss_pred EEeeCHHHHHHHHHHHhccc
Q psy652 307 VCIDNEALWSLYHSIISAVE 326 (331)
Q Consensus 307 vC~~n~~l~~~f~~~v~~~~ 326 (331)
+-..++.||+.|+++.++.+
T Consensus 74 vRVSSK~L~~~Fnn~L~~l~ 93 (93)
T d1b24a1 74 LRVSSKKLYYYFANMLERIR 93 (93)
T ss_dssp EEEECHHHHHHHHHHTTSGG
T ss_pred EEeeHHHHHHHHHHHHhhcC
Confidence 45688999999999987653
No 7
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.76 E-value=70 Score=23.49 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=19.4
Q ss_pred chHHhhhhhhhcCCCCCCCCCCeEEEEEcCCC
Q psy652 35 LPGKILSPYLFNASYAPEFSADGVKILYNDQT 66 (331)
Q Consensus 35 ~l~~TL~q~~~~~~~~~~~~~~~~~i~YNDqp 66 (331)
+...|+.++|+...+. +...||.|.+|.
T Consensus 88 ~~~~ti~~lY~~~kde----DGfLYi~Ys~en 115 (118)
T d3d32a1 88 PTSATMGQLYQEHHEE----DFFLYIAYSDES 115 (118)
T ss_dssp CTTCBHHHHHHHHCCT----TSCEEEEEESCT
T ss_pred CccccHHHHHHHhCCC----CcEEEEEEeccc
Confidence 4457888888765331 348999999874
No 8
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.26 E-value=1.2e+02 Score=18.71 Aligned_cols=15 Identities=20% Similarity=0.693 Sum_probs=13.0
Q ss_pred eCHHHHHHHHHHHhc
Q psy652 310 DNEALWSLYHSIISA 324 (331)
Q Consensus 310 ~n~~l~~~f~~~v~~ 324 (331)
.||.|.++|+++|..
T Consensus 18 enp~L~qLYkdLVvs 32 (48)
T d2diia1 18 EDPVLFQLYKDLVVS 32 (48)
T ss_dssp HCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHh
Confidence 589999999998864
No 9
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.73 E-value=88 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.185 Sum_probs=10.2
Q ss_pred ceeEEEeccCCC
Q psy652 87 GGIWIVHSVPHF 98 (331)
Q Consensus 87 ~G~wlvHS~P~F 98 (331)
.+++||||+|+.
T Consensus 188 ~~v~lV~SvPG~ 199 (215)
T d1q32a1 188 SELEFVYSTPSK 199 (215)
T ss_dssp TTCEEEEECCCT
T ss_pred CCEEEEEeCCcC
Confidence 479999999974
No 10
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}
Probab=5.25 E-value=1.8e+02 Score=24.16 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=16.4
Q ss_pred cccEEEEeeCHHHHHHHHHHH
Q psy652 302 RGGGSVCIDNEALWSLYHSII 322 (331)
Q Consensus 302 RGGG~vC~~n~~l~~~f~~~v 322 (331)
-|||+++++|+.+....+.+-
T Consensus 178 geGG~i~tnn~~~~~~~~~~~ 198 (374)
T d1o69a_ 178 SGGGMLIGKNKEKIEKARFYS 198 (374)
T ss_dssp SSCEEEEESCHHHHHHHHHHT
T ss_pred ccceeehhhhHHHHHhhcccc
Confidence 368999999999888776553
Done!