RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy652
         (331 letters)



>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia
           elata [TaxId: 91201]}
          Length = 112

 Score = 26.3 bits (57), Expect = 3.0
 Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 3/83 (3%)

Query: 35  LPGKILSP--YLFNASYAPEFSADGVKILYNDQTPIRTTVKFGHSKGL-VVGNSRGGIWI 91
             G  L     L    Y      D   +LY++   +  +   G + G  +   + G + I
Sbjct: 5   NSGHQLDTGGSLAEGGYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVI 64

Query: 92  VHSVPHFVDDSQTSYTYPHTGLM 114
                     +       +  ++
Sbjct: 65  YSGSRAIWASNTNRQNGNYYLIL 87


>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus
           nivalis) [TaxId: 4670]}
          Length = 108

 Score = 25.0 bits (54), Expect = 6.9
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 35  LPGKILSP--YLFNASYAPEFSADGVKILYNDQTPIRTTVKFGHSKGL-VVGNSRGGIWI 91
             G+ LS   +L   S+      D   +LY+   PI  T   G S+   +   + G + +
Sbjct: 5   YSGETLSTGEFLNYGSFVFIMQEDCNLVLYDVDKPIWATNTGGLSRSCFLSMQTDGNLVV 64

Query: 92  VHSVPHFVDDSQTSYTYPHTGL 113
            +     +  S T     +   
Sbjct: 65  YNPSNKPIWASNTGGQNGNYVC 86


>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa
          protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 78

 Score = 24.3 bits (53), Expect = 7.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 52 EFSADGVKILYNDQTPIRTTVKFGHSKGLVV 82
          EFS    K+   D   +R  +K+ H  G + 
Sbjct: 6  EFSRAAEKLYLADPMKVRVVLKYRHVDGNLC 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,159,184
Number of extensions: 51141
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)