Query psy6521
Match_columns 83
No_of_seqs 102 out of 616
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 20:10:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00110 hypothetical protein; 99.8 5.9E-20 1.3E-24 138.7 5.7 45 37-81 1-45 (245)
2 TIGR01033 DNA-binding regulato 99.8 7.1E-20 1.5E-24 137.5 5.7 45 37-81 1-45 (238)
3 COG0217 Uncharacterized conser 99.8 1.6E-19 3.6E-24 137.3 5.5 45 37-81 1-45 (241)
4 PRK12378 hypothetical protein; 99.7 1.8E-17 3.9E-22 124.7 5.5 43 38-81 1-43 (235)
5 KOG2972|consensus 99.7 1.1E-17 2.3E-22 129.1 4.2 56 26-81 18-73 (276)
6 PF01709 Transcrip_reg: Transc 99.5 3.4E-16 7.4E-21 116.8 -1.2 41 41-81 1-41 (234)
7 PRK07562 ribonucleotide-diphos 90.5 0.26 5.6E-06 45.3 3.2 38 43-80 296-339 (1220)
8 smart00685 DM14 Repeats in fly 58.8 16 0.00034 22.7 3.1 26 48-73 17-42 (59)
9 PF08234 Spindle_Spc25: Chromo 50.1 12 0.00027 23.1 1.7 61 4-73 12-73 (74)
10 smart00099 btg1 tob/btg1 famil 20.0 40 0.00088 23.1 0.3 12 3-14 55-69 (108)
No 1
>PRK00110 hypothetical protein; Validated
Probab=99.80 E-value=5.9e-20 Score=138.69 Aligned_cols=45 Identities=38% Similarity=0.607 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|+|||||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus 1 maGHskW~~Ikh~K~~~D~kksk~f~kl~reI~vAak~GG~DP~~ 45 (245)
T PRK00110 1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEG 45 (245)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 799999999999999999999999999999999999999999864
No 2
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=99.80 E-value=7.1e-20 Score=137.48 Aligned_cols=45 Identities=42% Similarity=0.626 Sum_probs=43.7
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|+|||||+||||+|+++|++|+++|+||+|+|++|||+|||||..
T Consensus 1 maGHskw~~Ikh~K~~~D~~ksk~f~kl~r~I~vA~k~GG~DP~~ 45 (238)
T TIGR01033 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGGDPES 45 (238)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 799999999999999999999999999999999999999999875
No 3
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.6e-19 Score=137.32 Aligned_cols=45 Identities=42% Similarity=0.628 Sum_probs=43.8
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|+|||||.||+|+|+++|++|+|+|+||+|||++|||.|||||..
T Consensus 1 MaGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~ 45 (241)
T COG0217 1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPES 45 (241)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 899999999999999999999999999999999999999999864
No 4
>PRK12378 hypothetical protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=124.69 Aligned_cols=43 Identities=33% Similarity=0.478 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 38 aGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
||| ||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus 1 ~g~-kW~~Ikh~K~~~Da~ksk~f~kl~reI~vA~k~GG~dP~~ 43 (235)
T PRK12378 1 MGR-AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPES 43 (235)
T ss_pred CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 687 9999999999999999999999999999999999999874
No 5
>KOG2972|consensus
Probab=99.70 E-value=1.1e-17 Score=129.14 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=53.5
Q ss_pred cccccccCccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 26 NSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 26 ~~r~~sts~~~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
-.|.+++|+..|+||+||++|||+|+++|++|+|++.+|+++|..|||.||+||+|
T Consensus 18 ~s~sv~~s~~~~sgH~kwskIk~~Kg~nD~~rsk~~nkl~~~i~~aVk~gg~np~l 73 (276)
T KOG2972|consen 18 RSRSVTTSGWIMSGHNKWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPEL 73 (276)
T ss_pred chhheecccceecccchhhhhcccccccHHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence 44788999999999999999999999999999999999999999999999999987
No 6
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=99.55 E-value=3.4e-16 Score=116.84 Aligned_cols=41 Identities=46% Similarity=0.672 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 41 sKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|||+||||+|+++|++|+++|+||+|||++|||+|||||..
T Consensus 1 sKW~nIkh~K~~~D~~ksk~f~kl~reI~~Avk~GG~DP~~ 41 (234)
T PF01709_consen 1 SKWSNIKHKKAAQDAKKSKLFTKLSREITVAVKEGGPDPDM 41 (234)
T ss_dssp -SCGGTSSSTTTTTTSHHHHHHHHHHHHHHHHHCC-S-GGG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 69999999999999999999999999999999999999974
No 7
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=90.46 E-value=0.26 Score=45.34 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc------CCCcc
Q psy6521 43 WQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVT------HQYVV 80 (83)
Q Consensus 43 WsnIKhkKaa~DakKsKifsKl~KeI~vAaK~G------Gp~~~ 80 (83)
|.+.+..|.+.+..++++++|+.++|+.|+|.| |+||.
T Consensus 296 ~K~~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~ 339 (1220)
T PRK07562 296 WKVKEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPA 339 (1220)
T ss_pred hccchhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCcc
Confidence 333446799999999999999999999999999 56654
No 8
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=58.82 E-value=16 Score=22.70 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy6521 48 HIKAAKDQEKATLFTNLSKKLKLAVK 73 (83)
Q Consensus 48 hkKaa~DakKsKifsKl~KeI~vAaK 73 (83)
.-|.+.|..+++.|.+++|.+..+++
T Consensus 17 ~AK~~gd~~kAr~~~R~~K~~~~~I~ 42 (59)
T smart00685 17 QAKRAGDEEKARRHLRIAKQFDDAIK 42 (59)
T ss_pred HHHHcCCHHHHHHHHHHHhhHHHHHH
Confidence 34888999999999999998866554
No 9
>PF08234 Spindle_Spc25: Chromosome segregation protein Spc25; InterPro: IPR013255 This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex [], and in vertebrates it forms part of the Ndc80 complex []. ; PDB: 2VE7_B.
Probab=50.05 E-value=12 Score=23.14 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=32.4
Q ss_pred cccccccCCcch-hhhhhhhhhhcccccccCccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy6521 4 AFRCIQSKNPCK-LAFSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73 (83)
Q Consensus 4 ~~~~~~~~~~~~-~~~~l~~~~~~~r~~sts~~~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK 73 (83)
.|.+|.|+||.. -+|.|.+.........+.|.+ .. -..--.+..++.-+.++.+++..+-+
T Consensus 12 ~F~~id~~d~~re~s~~l~i~~~~Y~v~~~~P~l-~~--------l~~l~~~LN~t~dl~~Fl~~vR~~F~ 73 (74)
T PF08234_consen 12 VFTNIDPNDPDREFSFTLDISSDKYEVISCDPPL-ED--------LDELVDELNKTNDLSKFLKRVRKAFK 73 (74)
T ss_dssp EE-S-BTTBSSS-EEEEEE-SSS-EE-------------------THHHHHHHHH---HHHHHHHHHHHHH
T ss_pred EEeEcCCCCCCceEEEEEEECCCeEEEEEecCCc-ch--------HHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 588999999986 677777766666777888877 11 22345566788889999988877654
No 10
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=20.00 E-value=40 Score=23.14 Aligned_cols=12 Identities=58% Similarity=1.132 Sum_probs=8.8
Q ss_pred cccccc---ccCCcc
Q psy6521 3 SAFRCI---QSKNPC 14 (83)
Q Consensus 3 ~~~~~~---~~~~~~ 14 (83)
+||||| +..+|+
T Consensus 55 qayRCIrIn~~~Dp~ 69 (108)
T smart00099 55 SGFRCIRINQKVDPV 69 (108)
T ss_pred cceEEEEECCcCCHH
Confidence 799999 555554
Done!