Query psy6521
Match_columns 83
No_of_seqs 102 out of 616
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 20:10:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3q_A Transcriptional regulat 99.8 5.8E-21 2E-25 143.7 5.0 46 36-81 3-48 (247)
2 1kon_A Protein YEBC, YEBC; alp 99.8 4.2E-21 1.4E-25 144.7 -1.1 47 35-81 2-48 (249)
3 1lfp_A Hypothetical protein AQ 99.8 8.4E-21 2.9E-25 143.0 -2.4 45 37-81 1-45 (249)
4 1mw7_A Hypothetical protein HP 99.7 9.7E-18 3.3E-22 125.7 1.5 43 38-81 1-43 (240)
5 2kie_A Inositol polyphosphate 30.9 13 0.00045 25.4 0.5 12 1-12 63-74 (124)
6 2kgf_A Capsid protein P27; ret 22.9 54 0.0019 22.5 2.5 16 63-78 22-37 (140)
7 2v4x_A JSRV capsid, capsid pro 22.4 56 0.0019 22.4 2.5 16 63-78 17-32 (140)
8 4f7g_B Talin-1; alpha-helix bu 18.5 1.1E+02 0.0039 22.1 3.6 25 56-80 132-156 (216)
9 1p7n_A GAG polyprotein capsid 16.2 84 0.0029 22.3 2.3 17 63-79 46-62 (176)
10 2b5u_A Colicin E3; high resolu 13.6 2.6E+02 0.0088 23.3 4.8 36 35-70 382-420 (551)
No 1
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=99.82 E-value=5.8e-21 Score=143.71 Aligned_cols=46 Identities=35% Similarity=0.647 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 36 RYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 36 ~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
.|+|||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus 3 ~maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~ 48 (247)
T 4f3q_A 3 AMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDS 48 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 4999999999999999999999999999999999999999999964
No 2
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=99.79 E-value=4.2e-21 Score=144.70 Aligned_cols=47 Identities=38% Similarity=0.555 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 35 VRYAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 35 ~~maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
.+|||||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus 2 ~~MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~ 48 (249)
T 1kon_A 2 SHMAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDA 48 (249)
T ss_dssp ----CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CC
T ss_pred CccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 46999999999999999999999999999999999999999999864
No 3
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=99.77 E-value=8.4e-21 Score=143.04 Aligned_cols=45 Identities=31% Similarity=0.585 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 37 YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 37 maGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|||||||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~ 45 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEF 45 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 899999999999999999999999999999999999999999964
No 4
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=99.66 E-value=9.7e-18 Score=125.73 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy6521 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKVTHQYVVL 81 (83)
Q Consensus 38 aGHsKWsnIKhkKaa~DakKsKifsKl~KeI~vAaK~GGp~~~~ 81 (83)
|| |||+||||+|+++|++|+|+|+||+|||++|||+|||||..
T Consensus 1 aG-sKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~ 43 (240)
T 1mw7_A 1 MG-RAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDT 43 (240)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 68 99999999999999999999999999999999999999964
No 5
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=30.93 E-value=13 Score=25.43 Aligned_cols=12 Identities=50% Similarity=1.038 Sum_probs=9.5
Q ss_pred CCccccccccCC
Q psy6521 1 MNSAFRCIQSKN 12 (83)
Q Consensus 1 ~~~~~~~~~~~~ 12 (83)
+||-|||+|--.
T Consensus 63 INs~FrcVqEAE 74 (124)
T 2kie_A 63 INSHFRCVQEAE 74 (124)
T ss_dssp CSSSCEEEESSS
T ss_pred cccchhhhHhhh
Confidence 589999998643
No 6
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=22.91 E-value=54 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCC
Q psy6521 63 NLSKKLKLAVKVTHQY 78 (83)
Q Consensus 63 Kl~KeI~vAaK~GGp~ 78 (83)
|..|||..||+.-||+
T Consensus 22 K~iKeLk~Av~~YGp~ 37 (140)
T 2kgf_A 22 AVIKELKTAASQYGAT 37 (140)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6789999999999986
No 7
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=22.37 E-value=56 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCC
Q psy6521 63 NLSKKLKLAVKVTHQY 78 (83)
Q Consensus 63 Kl~KeI~vAaK~GGp~ 78 (83)
|..+||..||+.-||+
T Consensus 17 K~IkeLk~Av~~YGp~ 32 (140)
T 2v4x_A 17 KQLKELKIACSQYGPT 32 (140)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6789999999999986
No 8
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=18.51 E-value=1.1e+02 Score=22.10 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Q psy6521 56 EKATLFTNLSKKLKLAVKVTHQYVV 80 (83)
Q Consensus 56 kKsKifsKl~KeI~vAaK~GGp~~~ 80 (83)
..+|...-=.-++..|+|++|.||+
T Consensus 132 dq~Ktv~es~lqlv~AaK~agGNPk 156 (216)
T 4f7g_B 132 DQTKTLAESALQLLYTAKEAGGNPK 156 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4456677777889999999999997
No 9
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=16.20 E-value=84 Score=22.34 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCCCc
Q psy6521 63 NLSKKLKLAVKVTHQYV 79 (83)
Q Consensus 63 Kl~KeI~vAaK~GGp~~ 79 (83)
|+.+||..||+.-||+-
T Consensus 46 K~IkeLk~av~~yG~~a 62 (176)
T 1p7n_A 46 KLITRLADTVRTKGLRS 62 (176)
T ss_dssp HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 67889999999999863
No 10
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=13.60 E-value=2.6e+02 Score=23.29 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=20.0
Q ss_pred cccccchHHHH--HHHHHHHhhH-HHHHHHHHHHHHHHH
Q psy6521 35 VRYAGHSKWQN--IRHIKAAKDQ-EKATLFTNLSKKLKL 70 (83)
Q Consensus 35 ~~maGHsKWsn--IKhkKaa~Da-kKsKifsKl~KeI~v 70 (83)
++++||+=|+- .+.+.+..|. .+...|.++.+|+..
T Consensus 382 p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~ 420 (551)
T 2b5u_A 382 PMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSD 420 (551)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhhhccchhhhhhhhhhhHHHHHHHHhhcccc
Confidence 57899999963 1111122222 345567777776643
Done!