RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6521
         (83 letters)



>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability,
          structural genomics, BSGC structure funded by NIH,
          protein structure initiative, PSI; 1.72A {Aquifex
          aeolicus} SCOP: e.39.1.1
          Length = 249

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHS W  I+H KA  D ++  LF+ L +++ +A +
Sbjct: 2  AGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR 37


>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston
          bacterial structural genomics initiative, BSGI,
          structural genomics; 2.20A {Escherichia coli} SCOP:
          e.39.1.1
          Length = 249

 Score = 54.5 bits (132), Expect = 1e-10
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW N RH KAA+D ++  +FT + ++L  A K
Sbjct: 5  AGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAK 40


>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A
          {Coxiella burnetii}
          Length = 247

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 16/36 (44%), Positives = 26/36 (72%)

Query: 38 AGHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          AGHSKW NI+H KA +D ++  +FT L +++ +A +
Sbjct: 5  AGHSKWANIKHAKARQDAKRGKVFTKLIREITVAAR 40


>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein
          structure initiative, northeast structural genomics
          consortium, NESG; 2.00A {Helicobacter pylori} SCOP:
          e.39.1.1
          Length = 240

 Score = 34.8 bits (81), Expect = 9e-04
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 42 KWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
           ++  R  K  +  + + +F  L+K + LA K
Sbjct: 4  AFEYRRAAKEKRWDKMSKVFPKLAKAITLAAK 35


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.061
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 37  YAGHSKWQNIRHIKAAKDQEKATLFTNLSKKLK-LAVKVTH 76
           + GH       H+K  +  E+ TLF  +    + L  K+ H
Sbjct: 476 HIGH-------HLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509



 Score = 26.7 bits (58), Expect = 0.83
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 20/71 (28%)

Query: 22  VAKINSNILSTIPVRYA-GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVKV------ 74
           V   N   LS I      G + W N +H+   K          L+  ++ ++ V      
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----------LTTIIESSLNVLEPAEY 371

Query: 75  THQY---VVLP 82
              +    V P
Sbjct: 372 RKMFDRLSVFP 382


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.6 bits (58), Expect = 1.0
 Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 21/41 (51%)

Query: 3    SAFRCIQSKN--PCKLAFSLNVAKINSNILSTIPVRYAGHS 41
            +AF  ++SK   P    F                   AGHS
Sbjct: 1742 AAFEDLKSKGLIPADATF-------------------AGHS 1763


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 1.2
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 10/28 (35%)

Query: 56 EKATLFTNLSKKLKLAVKVTHQYVVLPN 83
          EK  L     KKL+ ++K+   Y    +
Sbjct: 18 EKQAL-----KKLQASLKL---YA--DD 35


>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel,
           rossmann fold, B12-dependent methyltransferase; HET:
           B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
          Length = 446

 Score = 24.2 bits (52), Expect = 6.0
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 51  AAKDQEKATLFTNLSKKLKLAVKVTHQYVVLP 82
            A  + +A     + KK+ L  KV    +++P
Sbjct: 377 YADGKFEAEKIAAVMKKVDLDNKVKRHRIIIP 408


>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
           subunit; heterodimer, beta-alpha-barrels,
           oxidoreductase; HET: B12; 1.90A {Carboxydothermus
           hydrogenoformans} PDB: 2ycl_A*
          Length = 445

 Score = 24.1 bits (52), Expect = 6.1
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 51  AAKDQEKATLFTNLSKKLKLAVKVTHQYVVLP 82
            A  +          K+  +A KV H+  +LP
Sbjct: 376 WAAGKFTPEKIAQFLKESGIAEKVNHRKAILP 407


>3s40_A Diacylglycerol kinase; structural genomics, the center for
           structural genomics of infectious diseases, csgid,
           transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
          Length = 304

 Score = 24.2 bits (53), Expect = 6.2
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 29  ILSTIPVRYAGHSKWQNIRHIKAAK 53
               I  +    S   +I H+KA  
Sbjct: 237 FKDYIGKKLFEDSNENDIFHVKAKS 261


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0807    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,091,152
Number of extensions: 46922
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 11
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)