RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6521
         (83 letters)



>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
          [TaxId: 562]}
          Length = 244

 Score = 56.5 bits (136), Expect = 7e-12
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 39 GHSKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          GHSKW N RH KAA+D ++  +FT + ++L  A K
Sbjct: 1  GHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAK 35


>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 243

 Score = 49.3 bits (117), Expect = 3e-09
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 41 SKWQNIRHIKAAKDQEKATLFTNLSKKLKLAVK 73
          S W  I+H KA  D ++  LF+ L +++ +A +
Sbjct: 1  SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATR 33


>d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola
           insolens, Cel6a [TaxId: 34413]}
          Length = 364

 Score = 24.6 bits (53), Expect = 1.6
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 18  FSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFT 62
            + NVA  N+  +S+ P   + +  +    +I+A +   +A  F 
Sbjct: 218 LATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFP 262


>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 264

 Score = 24.1 bits (52), Expect = 2.2
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 41  SKWQNIRHIKAAKDQEK--ATLFTNLSKKLKLAVKVTHQYVVLPN 83
             W +I +  +  +       L+ N   + + A    + Y+VLP 
Sbjct: 209 GNWFHINNSHSKDEVSGDVFKLWINHGARPENA---QYAYIVLPG 250


>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma
           reesei, Cel6a [TaxId: 51453]}
          Length = 362

 Score = 23.8 bits (51), Expect = 3.3
 Identities = 9/47 (19%), Positives = 19/47 (40%)

Query: 18  FSLNVAKINSNILSTIPVRYAGHSKWQNIRHIKAAKDQEKATLFTNL 64
            + NVA  N   +++ P    G++ +    +I A         ++N 
Sbjct: 214 LATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNA 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,979
Number of extensions: 9078
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)