BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6522
(1407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 146/321 (45%), Gaps = 45/321 (14%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH S+V+ V F G+ I + +DD +KLW R+G+LL TL G S + +A +
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
A+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP---DG-QTIASASDDKTVKLW-- 166
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
+ + + ++ + +FSP G +A+ S D V+++ +G
Sbjct: 167 -----------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--- 212
Query: 382 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440
+L+ + HS V + +S S S D T +W R +L + T H+
Sbjct: 213 --LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQL-LQTLTGHSS 263
Query: 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500
V VA+ D I + + + +K+W+ NG L+Q L GH++ V+ +
Sbjct: 264 S----------VNGVAFRP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 311
Query: 501 HPFDSRVLLSAGHDGLIIIWD 521
P D + + SA D + +W+
Sbjct: 312 SP-DGQTIASASDDKTVKLWN 331
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 45/321 (14%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH S+V+ V F G+ I + +DD +KLW R+G+ L TL G S + +A +
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
A+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 360 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP---DG-QTIASASDDKTVKLW-- 412
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
+ + + ++ + +FSP +A+ S D V+++ +G
Sbjct: 413 -----------NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--- 458
Query: 382 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440
+L+ + HS V + +S S S D T +W R +L + T H+
Sbjct: 459 --LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN------RNGQL-LQTLTGHSS 509
Query: 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500
V VA+ + D I + + + +K+W+ NG L+Q L GH++ V+ +
Sbjct: 510 S----------VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 557
Query: 501 HPFDSRVLLSAGHDGLIIIWD 521
P D + + SA D + +W+
Sbjct: 558 SP-DGQTIASASSDKTVKLWN 577
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 144/320 (45%), Gaps = 45/320 (14%)
Query: 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 262
H S+V V F G+ I + +DD +KLW R+G+LL TL G S + +A +A
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322
+ + DKT+++WN + + L GH + GV F P +G +AS S D + W
Sbjct: 74 SASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP---DG-QTIASASDDKTVKLW--- 125
Query: 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL 382
+ + + ++ + +FSP G +A+ S D V+++ +G
Sbjct: 126 ----------NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---- 171
Query: 383 GILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+L+ + HS V + +S S S D T +W R +L + T H+
Sbjct: 172 -LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQL-LQTLTGHSSS 223
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
V VA+ + D I + + + +K+W+ NG L+Q L GH++ V +
Sbjct: 224 ----------VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFR 271
Query: 502 PFDSRVLLSAGHDGLIIIWD 521
P D + + SA D + +W+
Sbjct: 272 P-DGQTIASASDDKTVKLWN 290
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 196 QHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI 254
QH L GH S+V+ V F G+ I + +DD +KLW R+G+LL TL G S + +A
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 255 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
+A+ + DKT+++WN + + L GH + GV F P + +AS S D
Sbjct: 394 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDD----QTIASASDDK 448
Query: 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 374
+ W + + + ++ + +FSP G +A+ S D V+++
Sbjct: 449 TVKLW-------------NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 375 MDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
+G +L+ + HS V + +S S S D T +W
Sbjct: 496 RNGQ-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 44/281 (15%)
Query: 242 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
L S + +A +A+ + DKT+++WN + + L GH + GV F P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP--- 67
Query: 302 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 361
+G +AS S D + W + + + ++ + +FSP G +
Sbjct: 68 DG-QTIASASDDKTVKLW-------------NRNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 362 ATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
A+ S D V+++ +G +L+ + HS V + +S S S D T +W
Sbjct: 114 ASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 167
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
R +L + T H+ V VA+ + D I + + + +K+W+
Sbjct: 168 -----RNGQL-LQTLTGHSSS----------VWGVAF-SPDGQTIASASDDKTVKLWNR- 209
Query: 481 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
NG L+Q L GH++ V + P D + + SA D + +W+
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 249
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 333 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHS 391
H V R+ ++ + +FSP G +A+ S D V+++ +G +L+ + HS
Sbjct: 3 HMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQTLTGHS 57
Query: 392 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 451
V + +S S S D T +W R +L + T H+
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQL-LQTLTGHSSS---------- 100
Query: 452 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSA 511
V VA+ + D I + + + +K+W+ NG L+Q L GH++ V+ + P D + + SA
Sbjct: 101 VRGVAF-SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASA 157
Query: 512 GHDGLIIIWD 521
D + +W+
Sbjct: 158 SDDKTVKLWN 167
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 35/321 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDV 139
Query: 322 KLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380
K + + H +PV F+ G + + S D R++ D
Sbjct: 140 KTGMCLKTLPAHSDPVS-------------AVHFNRDGSLIVSSSYDGLCRIW--DTASG 184
Query: 381 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---K 231
Query: 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM-VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 501 HPFDSRVLLSA-GHDGLIIIW 520
HP ++ + +A +D I +W
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 37/287 (12%)
Query: 238 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 297
L+ TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 ----SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQ 121
Query: 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417
+ +GS D VR++ V + + + + HSD V ++ ++ VS S DG I
Sbjct: 122 SNLIVSGSFDESVRIWD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
W Q CL K D+ N V+ V + + ++++ A + +K+W
Sbjct: 179 WDTASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLW 222
Query: 478 DAFNGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
D G ++ GH NE + + ++ + ++S D ++ IW++
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 133
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 134 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 181
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 228
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 287
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 288 PTENIIASAALENDKTIKLW 307
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 73
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 74 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 120
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 121 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 178 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 221
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 85
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 86 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 128
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 181
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 139
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 140 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 187
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 234
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 293
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 294 PTENIIASAALENDKTIKLW 313
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 79
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 80 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 126
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 127 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 184 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 227
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 91
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 92 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 134
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 187
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 137/320 (42%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 292 PTENIIASAALENDKTIKLW 311
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LAA + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 134
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 135 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 182
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 229
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 288
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 289 PTENIIASAALENDKTIKLW 308
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 75 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 121
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 122 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 179 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 50.1 bits (118), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 87 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 129
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 182
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 130
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 131 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 178
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 225
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 284
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 285 PTENIIASAALENDKTIKLW 304
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 70
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 71 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 117
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 118 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 175 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 218
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 82
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 83 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 125
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 178
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 134
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 135 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 182
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 229
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 288
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 289 PTENIIASAALENDKTIKLW 308
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 75 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 121
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 122 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 179 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 222
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 86
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 87 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 129
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 182
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 151
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 152 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 199
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 246
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 305
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 306 PTENIIASAALENDKTIKLW 325
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 91
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 92 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 138
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 139 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 196 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 239
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 103
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 104 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 146
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 199
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 135
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 136 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 183
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 230
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 289
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 290 PTENIIASAALENDKTIKLW 309
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 75
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 76 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 122
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 123 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 180 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 223
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 87
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 88 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 130
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 183
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 140
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 141 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 188
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 235
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 294
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 295 PTENIIASAALENDKTIKLW 314
Score = 69.3 bits (168), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 81 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 127
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 128 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 185 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 228
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 92
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 93 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 135
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 188
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.3 bits (207), Expect = 5e-16, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 32/310 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 502 PFDSRVLLSA 511
P ++ + +A
Sbjct: 292 PTENIIASAA 301
Score = 70.5 bits (171), Expect = 6e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 202 GHLSAVFCVLFD---KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 258
GH + +C+ + G+ IV+G++D L+ +W + +++ L+G + + A
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 259 ILLAAGTV--DKTIRIW 273
++A+ + DKTI+++
Sbjct: 295 NIIASAALENDKTIKLF 311
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 156
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 157 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 204
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 251
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 310
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 311 PTENIIASAALENDKTIKLW 330
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 96
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 97 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 143
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 144 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 201 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 244
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 108
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 109 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 151
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 204
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 135/310 (43%), Gaps = 32/310 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 137
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + P +A F+ G + + S D R++ D
Sbjct: 138 --DVKTGKCLKTLPAHSD----PVSA----VHFNRDGSLIVSSSYDGLCRIW--DTASGQ 185
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 232
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 291
Query: 502 PFDSRVLLSA 511
P ++ + +A
Sbjct: 292 PTENIIASAA 301
Score = 70.5 bits (171), Expect = 7e-12, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 124
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 125 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 182 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 225
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 202 GHLSAVFCVLFD---KLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 258
GH + +C+ + G+ IV+G++D L+ +W + +++ L+G + + A
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 259 ILLAAGTV--DKTIRIW 273
++A+ + DKTI+++
Sbjct: 295 NIIASAALENDKTIKLY 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 84.0 bits (206), Expect = 6e-16, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 33/320 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIW-- 158
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
D+ K + P + + F+ G + + S D R++ D
Sbjct: 159 --DVKTGKCLKTLPAHSDP--------VSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQ 206
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441
+++ + V +++S + ++ + D T +W Y + CL K
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK----------CL---KT 253
Query: 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V H
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACH 312
Query: 502 PFDSRVLLSA-GHDGLIIIW 520
P ++ + +A +D I +W
Sbjct: 313 PTENIIASAALENDKTIKLW 332
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 37/284 (13%)
Query: 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300
TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 98
Query: 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 99 -SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQSNL 145
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420
+ +GS D VR++ V + + + HSD V ++ ++ VS S DG IW
Sbjct: 146 IVSGSFDESVRIWD---VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Query: 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480
Q CL K D+ N V+ V + + ++++ A + +K+WD
Sbjct: 203 ASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNTLKLWDYS 246
Query: 481 NGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
G ++ GH NE + + ++ + ++S D L+ IW++
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 110
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 111 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 153
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 206
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.6 bits (205), Expect = 6e-16, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 137/321 (42%), Gaps = 35/321 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH AV V F GE + + + D LIK+W A DGK T+ G ISD+A + + LL
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+ + DKT++IW++ + + L GH + NF P N + S S D + W
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDV 139
Query: 322 KLDIDISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380
K + + H +PV F+ G + + S D R++ D
Sbjct: 140 KTGMCLKTLPAHSDPVS-------------AVHFNRDGSLIVSSSYDGLCRIW--DTASG 184
Query: 381 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440
+++ + V +++S + ++ + D +W Y + CL K
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK----------CL---K 231
Query: 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500
+ N+K + +W+++ N + IW+ ++VQ L+GHT+ V
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM-VYIWNLQTKEIVQKLQGHTDVVISTAC 290
Query: 501 HPFDSRVLLSA-GHDGLIIIW 520
HP ++ + +A +D I +W
Sbjct: 291 HPTENIIASAALENDKTIKLW 311
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 124/287 (43%), Gaps = 37/287 (12%)
Query: 238 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 297
L+ TL G + +S + LA+ + DK I+IW + GH+ I+ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357
+ N L S S D + W D+ K + + ++ + ++ C +F+P
Sbjct: 78 ----SDSNLLVSASDDKTLKIW----DVSSGKCL--------KTLKGHSNYVFCCNFNPQ 121
Query: 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417
+ +GS D VR++ V + + + + HSD V ++ ++ VS S DG I
Sbjct: 122 SNLIVSGSFDESVRIWD---VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
W Q CL K D+ N V+ V + + ++++ A + +K+W
Sbjct: 179 WDTASGQ----------CL---KTLIDDDNP--PVSFVKFSPNGKYILAA-TLDNDLKLW 222
Query: 478 DAFNGDLVQVLKGHTNEVFVLESH--PFDSRVLLSAGHDGLIIIWDI 522
D G ++ GH NE + + ++ + ++S D ++ IW++
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 354 FSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FSP G +LA+ S D ++++ DG + H + + WS VS S D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSNLLVSASDD 89
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW + CL K S+ V ++ +++ +F+
Sbjct: 90 KTLKIW----------DVSSGKCLKTLKGHSN------YVFCCNFNPQSNLIVSG-SFDE 132
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526
++IWD G ++ L H++ V + + D +++S+ +DGL IWD S +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ 185
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 79/357 (22%)
Query: 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 255
+ Y GH S V V+F + V+V+ ++D IK+W G TL+G + + DI+ D
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+ LLA+ + D TI++W+ Q I + GH ++ V+ P NG +++ S S D
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP---NG-DHIVSASRDKT 215
Query: 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
I W+ + + H + +RP G +A+ S D VRV+
Sbjct: 216 IKMWEVQTGYCVKTFTGHRE--WVRMVRPNQ----------DGTLIASCSNDQTVRVWV- 262
Query: 376 DGVDSPLGILEVEEHSDKVDSIQW----SHSHLR----------------FVSGSRDGTA 415
V + E+ EH V+ I W S+S + +SGSRD T
Sbjct: 263 --VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 416 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV----------- 464
+W + CL +T+V D WV
Sbjct: 321 KMW----------DVSTGMCL---------------MTLV---GHDNWVRGVLFHSGGKF 352
Query: 465 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
I + + +++WD N ++ L H + V L+ H + +++ D + +W+
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 408
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 141/318 (44%), Gaps = 50/318 (15%)
Query: 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT 265
+ C+ F G IV+G+DD +K+W A GK L TL G +G + + R+ ++ +G+
Sbjct: 121 VITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGS 176
Query: 266 VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 325
D+T+++WN +T I L GH + ++ V S S D + W DI
Sbjct: 177 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVW----DI 226
Query: 326 DISKTVFHEPVMFNERIRPGN-AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGI 384
+ + + + G+ A + C + G + +G+ D V+V+ + + +
Sbjct: 227 ETGQCL---------HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPE---TETCL 272
Query: 385 LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 444
++ H+++V S+Q+ H+ VSGS D + +W + ++T H TS
Sbjct: 273 HTLQGHTNRVYSLQFDGIHV--VSGSLDTSIRVWDVETGNC------IHTLTGHQSLTSG 324
Query: 445 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFD 504
K ++ + N + +KIWD G +Q L+G + F+
Sbjct: 325 MELKDN-------------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN 371
Query: 505 SRVLLSAGHDGLIIIWDI 522
++++ DG + +WD+
Sbjct: 372 KNFVITSSDDGTVKLWDL 389
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 29/222 (13%)
Query: 198 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR 257
+V +GH++AV CV +D G +V+GA D ++K+W L TL+G + + + D
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-- 288
Query: 258 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
I + +G++D +IR+W+++T I L GHQ + +G+ N L S + D +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------NILVSGNADSTVK 342
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAH---ILCSSFSPGGLFLATGSGDHHVRVYK 374
W DI + + + ++ N H + C F+ F+ T S D V+++
Sbjct: 343 IW----DIKTGQCL--------QTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWD 388
Query: 375 MDGVDSPLGILEVEEHSDK--VDSIQWSHSHLRFVSGSRDGT 414
+ + ++ +E V I+ S++ L GSR+GT
Sbjct: 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 54/324 (16%)
Query: 200 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------- 248
+L H S V CV F GE + TG + +++R DG L+A L S
Sbjct: 60 SLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 249 -------ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
I + LA G D+ IRIW+++ + +L GH+ I +++ P
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--- 175
Query: 302 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 361
+ L S S D + W + S T+ E + + PG+ G ++
Sbjct: 176 -SGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGD-----------GKYI 222
Query: 362 ATGSGDHHVRVYKMDGVDSPLGIL------EVEE---HSDKVDSIQWSHSHLRFVSGSRD 412
A GS D VRV+ DS G L E E H D V S+ ++ VSGS D
Sbjct: 223 AAGSLDRAVRVW-----DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
+ +W + + + D T T E + +K V VA +D ++++ + +
Sbjct: 278 RSVKLWNLQNAN---NKSDSKTPNSGTCEVTYIGHKDF-VLSVATTQNDEYILSG-SKDR 332
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVF 496
+ WD +G+ + +L+GH N V
Sbjct: 333 GVLFWDKKSGNPLLMLQGHRNSVI 356
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 334 EPVMFNERIRPG-NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 392
+P N P + +I FSP G FLATG+ D +R++ +++ ++ ++ H
Sbjct: 110 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD---IENRKIVMILQGHEQ 166
Query: 393 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 452
+ S+ + S + VSGS D T IW + Q T D V
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL-----------TLSIED------GV 209
Query: 453 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-------GHTNEVFVLESHPFDS 505
T VA D I A + + +++WD+ G LV+ L GH + V+ + D
Sbjct: 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV-VFTRDG 268
Query: 506 RVLLSAGHDGLIIIWDILSSKQR 528
+ ++S D + +W++ ++ +
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNK 291
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD------------GKLLATLRGCSGEI 249
GH +V+ V+F + G+ +V+G+ D +KLW ++ G T G +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 250 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG--FNYL 307
+A + + +G+ D+ + W+ ++ P+ +L GH+ + V G +N
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 308 ASTSTDGCIGFWKYK 322
A+ S D WKYK
Sbjct: 374 ATGSGDCKARIWKYK 388
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 44/245 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH ++ + + G+ +V+G+ D +++W R G+ TL G + +
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222
Query: 262 AAGTVDKTIRIWNLQTLAPISVL-------VGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
AAG++D+ +R+W+ +T + L GH+ + V F + S S D
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF----TRDGQSVVSGSLDR 278
Query: 315 CIGFWKYKLDIDISKT------------VFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 362
+ W + + S + + H+ + + + +IL S G LF
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 363 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS------HLRFVSGSRDGTAL 416
SG+ PL L ++ H + V S+ ++ + F +GS D A
Sbjct: 339 KKSGN-------------PL--LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 417 IWYYK 421
IW YK
Sbjct: 384 IWKYK 388
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 260
+GH V V + E I++G+ D + W + G L L+G + +A+ N + L
Sbjct: 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 261 ------LAAGTVDKTIRIWNLQTLAP 280
A G+ D RIW + +AP
Sbjct: 367 GPEYNVFATGSGDCKARIWKYKKIAP 392
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 57/328 (17%)
Query: 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT 265
V+C+ +D + IV+G D IK+W + L G +G + + D R I+ G+
Sbjct: 135 GVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII--TGS 190
Query: 266 VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 325
D T+R+W++ T ++ L+ H + + F NG + + S D I W
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF----NNGM--MVTCSKDRSIAVWDMASPT 244
Query: 326 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 385
DI+ V+ R A + F ++ + SGD ++V+ + +
Sbjct: 245 DITL----RRVLVGHR-----AAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEF---VR 290
Query: 386 EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 445
+ H + +Q+ + VSGS D T +W +C CL E +E
Sbjct: 291 TLNGHKRGIACLQYRDRLV--VSGSSDNTIRLWDIEC----------GACL-RVLEGHEE 337
Query: 446 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWD--------AFNGDL-VQVLKGHTNEVF 496
+ I+ D I + ++ +IK+WD A G L ++ L H+ VF
Sbjct: 338 LVRCIRF--------DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389
Query: 497 VLESHPFDSRVLLSAGHDGLIIIWDILS 524
L+ FD ++S+ HD I+IWD L+
Sbjct: 390 RLQ---FDEFQIVSSSHDDTILIWDFLN 414
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 38/223 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH +V C+ +D+ VI+TG+ D +++W G++L TL + + +N ++
Sbjct: 171 GHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MM 226
Query: 262 AAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318
+ D++I +W++ + I+ VLVGH+ + V+F Y+ S S D I
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF------DDKYIVSASGDRTIKV 280
Query: 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAH---ILCSSFSPGGLFLATGSGDHHVRVYKM 375
W E +R N H I C + + +GS D+ +R++ +
Sbjct: 281 WNTST---------------CEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDI 323
Query: 376 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
+ + L +L E H + V I++ + R VSG+ DG +W
Sbjct: 324 E-CGACLRVL--EGHEELVRCIRFDNK--RIVSGAYDGKIKVW 361
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 108/268 (40%), Gaps = 50/268 (18%)
Query: 261 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
+ +G D TI+IW+ TL +L GH G + + + + + S+D + W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY------DERVIITGSSDSTVRVWD 199
Query: 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380
++ + H + + R G + T S D + V+ M S
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFNNG--------------MMVTCSKDRSIAVWDM---AS 242
Query: 381 PLGIL---EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
P I + H V+ + + ++ VS S D T +W S F+R
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYI--VSASGDRTIKVW--NTSTCEFVR-------- 290
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T K + DR V++ + N I++WD G ++VL+GH V
Sbjct: 291 --------TLNGHKRGIACLQYRDRLVVSGSSDN-TIRLWDIECGACLRVLEGHEELVRC 341
Query: 498 LESHPFDSRVLLSAGHDGLIIIWDILSS 525
+ FD++ ++S +DG I +WD++++
Sbjct: 342 IR---FDNKRIVSGAYDGKIKVWDLVAA 366
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 10/128 (7%)
Query: 199 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN 258
V +GH +AV V FD + IV+ + D IK+W + + TL G I+ + R+
Sbjct: 251 VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRD 306
Query: 259 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318
L+ +G+ D TIR+W+++ A + VL GH+ ++ + F + S + DG I
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------DNKRIVSGAYDGKIKV 360
Query: 319 WKYKLDID 326
W +D
Sbjct: 361 WDLVAALD 368
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 126/274 (45%), Gaps = 25/274 (9%)
Query: 202 GHLSAVF-CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 260
GH+++V C+ F+ ++TGADD +I+++ + + K L L G G + + + IL
Sbjct: 119 GHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 261 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
+ +G+ D+T+R+W+++ V GH + ++ +E Y+ + S D + WK
Sbjct: 177 V-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWK 233
Query: 321 YKLDIDISK--------TVFHEPV---MFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369
+ + VFH P F +R A + + S G + +GS D+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNT 291
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
+ V+ + + L IL H+D++ S + H R +S S D T IW + + +
Sbjct: 292 LIVWDVAQMKC-LYIL--SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY-T 347
Query: 430 LDMNTCLPHTKETSDE--TNKKIKVTMVAWDASD 461
L +T L SD+ + ++ WDA+D
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 192 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 251
+ ++ Y+ GH ++ ++D + ++ + D I++W +G+L+ TL+G + +
Sbjct: 298 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 252 IAIDNRNILLAAGTVDKTIRIWN 274
+ + ++ L + D +IR W+
Sbjct: 358 LRLSDK--FLVSAAADGSIRGWD 378
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 24/240 (10%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH+G +T + CP + STS D + W D S+ + P + R+
Sbjct: 9 LTGHRGWVTSL-ACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLP---DRRLE 64
Query: 344 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 403
+A + + S G F + S DH +R++ + L H+ V S+ +S +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG---HTKDVLSVAFSPDN 121
Query: 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS-DR 462
+ VSG RD +W K C+ HT T+ V+ V + S D
Sbjct: 122 RQIVSGGRDNALRVWNVK-----------GECM-HTLSRGAHTDW---VSCVRFSPSLDA 166
Query: 463 WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
VI + ++ +K+WD G LV LKGHTN V + P D + S+ DG+ +WD+
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASSDKDGVARLWDL 225
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 94/234 (40%), Gaps = 27/234 (11%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISD 251
N + Y LGH V V F IV+G D +++W + G+ + TL RG +
Sbjct: 98 NGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVS 156
Query: 252 IAIDNRNI---LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 308
+ ++ ++ +G D +++W+L T ++ L GH +T V P + A
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP----DGSLCA 212
Query: 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 368
S+ DG W +S+ P+ N+ N + +C++ G
Sbjct: 213 SSDKDGVARLWDLTKGEALSEMAAGAPI--NQICFSPNRYWMCAATEKG----------- 259
Query: 369 HVRVYKMDGVDSPLGILEVEEHSDKV----DSIQWSHSHLRFVSGSRDGTALIW 418
+R++ ++ D + + + S K+ SI WS SG D +W
Sbjct: 260 -IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 20/179 (11%)
Query: 242 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
L G S +SD+A+ N + + D ++R+WNLQ +GH + V F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN- 121
Query: 302 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GL 359
+ S D + W K + M + C FSP
Sbjct: 122 ---RQIVSGGRDNALRVWNVKGE-----------CMHTLSRGAHTDWVSCVRFSPSLDAP 167
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
+ +G D+ V+V+ + + + +++ H++ V S+ S S +DG A +W
Sbjct: 168 VIVSGGWDNLVKVWDL---ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 36/192 (18%)
Query: 387 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446
+E HS V + S++ VS S D + +W + Q ++ L HTK+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY------KFLGHTKD----- 111
Query: 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK--GHTNEVFVLESHP-F 503
V VA+ +R +++ N +++W+ G+ + L HT+ V + P
Sbjct: 112 -----VLSVAFSPDNRQIVSGGRDN-ALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 504 DSRVLLSAGHDGLIIIWDI----LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 559
D+ V++S G D L+ +WD+ L + +G+ + V SPDG+ CA
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV-----------SPDGSLCAS 213
Query: 560 TDSYGHLLVYGL 571
+D G ++ L
Sbjct: 214 SDKDGVARLWDL 225
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 25/274 (9%)
Query: 202 GHLSAVF-CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 260
GH ++V C+ F+ ++TGADD I+++ + + K L L G G + + + IL
Sbjct: 119 GHXTSVITCLQFED--NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 261 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
+ +G+ D+T+R+W+++ V GH + ++ +E Y+ + S D + WK
Sbjct: 177 V-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWK 233
Query: 321 YKLDIDISK--------TVFHEPV---MFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369
+ + VFH P F +R A + + S G + +GS D+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV--RTVSGHGNIVVSGSYDNT 291
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
+ V+ V + + H+D++ S + H R +S S D T IW + + +
Sbjct: 292 LIVWD---VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXY-T 347
Query: 430 LDMNTCLPHTKETSDE--TNKKIKVTMVAWDASD 461
L +T L SD+ + ++ WDA+D
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 198 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR 257
Y+ GH ++ ++D + ++ + D I++W +G+L TL+G + + + + ++
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK 363
Query: 258 NILLAAGTVDKTIRIWN 274
L + D +IR W+
Sbjct: 364 --FLVSAAADGSIRGWD 378
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252
N R +GH AV + F G+ +++ ++D +I++W + G + L+ + D
Sbjct: 999 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF 1057
Query: 253 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 312
+ + LL+ + D T+++WN+ T HQG + C + + + +STS
Sbjct: 1058 RLLQDSRLLS-WSFDGTVKVWNVITGRIERDFTCHQGTVLS---CAISSDATKF-SSTSA 1112
Query: 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 372
D W + L + HE ++ N + CS+FS G+ LATG + +R+
Sbjct: 1113 DKTAKIWSFDL-----LSPLHE-------LKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1160
Query: 373 YKM-DG 377
+ + DG
Sbjct: 1161 WNVSDG 1166
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 342 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
+RP + + FS G +A+ D ++V+K + + +L+++ H D+V +S
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSS 674
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+ S D IW ++ T DE ++++ + S+
Sbjct: 675 DDSYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHFT-NKSN 719
Query: 462 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
++ + +F +K+WD + + GHTN V P D +L S DG + +WD
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 778
Query: 522 ILSSKQR 528
+ S+ +R
Sbjct: 779 VRSANER 785
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 42/329 (12%)
Query: 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 262
H AV+ F + G+ I + D +++++A G+ L ++ E+ A + + +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY--LASTSTDGCIGFWK 320
+ DK ++IW+ T + H + +F N N+ LA+ S D + W
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF----TNKSNHLLLATGSNDFFLKLWD 736
Query: 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380
+ T+F N FSP LA+ S D +R++ + +
Sbjct: 737 LN-QKECRNTMFGHTNSVNH-----------CRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 381 PLGI------LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 434
I L E+ + V+ I ++ S S DG +I ++ + + D+
Sbjct: 785 RKSINVKRFFLSSEDPPEDVEVI------VKCCSWSADGDKII---VAAKNKVLLFDI-- 833
Query: 435 CLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492
HT E + T+ D S D + A++ + +++W+ + V +GH
Sbjct: 834 ---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHL 889
Query: 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
+ V + P D L+A D I +W+
Sbjct: 890 SWVHGVMFSP-DGSSFLTASDDQTIRVWE 917
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDI 252
GH V C F G ++ TG D+ I++W DG+LL + S G ++D+
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 253 AI--DNRNILLAAGTVDKTIRIWNLQT 277
D++ ++ A G ++ WN+ T
Sbjct: 1192 CFSPDSKTLVSAGG----YLKWWNVAT 1214
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 48/323 (14%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHLS V V+F G +T +DD I++W + + + EI + +N ++L
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV-LKQEIDVVFQENETMVL 945
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGII--TGVNFCPLEVNGFNYLASTSTDGCIGFW 319
A N++ L I+ G + V+ C L + Y+A DG I
Sbjct: 946 AVD---------NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH-LEYVAFGDEDGAIKII 995
Query: 320 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+ + VF V + +R HI F+ G L + S D ++V+ D
Sbjct: 996 ELP-----NNRVFSSGVGHKKAVR----HI---QFTADGKTLISSSEDSVIQVWNWQTGD 1043
Query: 380 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 439
++ H + V + R +S S DGT +W + I D TC T
Sbjct: 1044 YVF----LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR---IERDF-TCHQGT 1094
Query: 440 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 499
+ ++ K + + D + KIW + LKGH N
Sbjct: 1095 VLSCAISSDATKFSSTSADKT-------------AKIWSFDLLSPLHELKGH-NGCVRCS 1140
Query: 500 SHPFDSRVLLSAGHDGLIIIWDI 522
+ D +L + +G I IW++
Sbjct: 1141 AFSLDGILLATGDDNGEIRIWNV 1163
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252
N R +GH AV + F G+ +++ ++D +I++W + G + L+ + D
Sbjct: 992 NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDF 1050
Query: 253 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST 312
+ + LL+ + D T+++WN+ T HQG + C + + + +STS
Sbjct: 1051 RLLQDSRLLS-WSFDGTVKVWNVITGRIERDFTCHQGTVLS---CAISSDATKF-SSTSA 1105
Query: 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 372
D W + L + HE ++ N + CS+FS G+ LATG + +R+
Sbjct: 1106 DKTAKIWSFDL-----LSPLHE-------LKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153
Query: 373 YKM-DG 377
+ + DG
Sbjct: 1154 WNVSDG 1159
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 342 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
+RP + + FS G +A+ D ++V+K + + +L+++ H D+V +S
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK---LLDIKAHEDEVLCCAFSS 667
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+ S D IW ++ T DE ++++ + S+
Sbjct: 668 DDSYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHFT-NKSN 712
Query: 462 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
++ + +F +K+WD + + GHTN V P D +L S DG + +WD
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 771
Query: 522 ILSSKQR 528
+ S+ +R
Sbjct: 772 VRSANER 778
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 131/329 (39%), Gaps = 42/329 (12%)
Query: 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 262
H AV+ F + G+ I + D +++++A G+ L ++ E+ A + + +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY--LASTSTDGCIGFWK 320
+ DK ++IW+ T + H + +F N N+ LA+ S D + W
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF----TNKSNHLLLATGSNDFFLKLWD 729
Query: 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380
+ T+F N FSP LA+ S D +R++ + +
Sbjct: 730 LN-QKECRNTMFGHTNSVNH-----------CRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 381 PLGI------LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 434
I L E+ + V+ I ++ S S DG +I ++ + + D+
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVI------VKCCSWSADGDKII---VAAKNKVLLFDI-- 826
Query: 435 CLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492
HT E + T+ D S D + A++ + +++W+ + V +GH
Sbjct: 827 ---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDSRLKVADCRGHL 882
Query: 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
+ V + P D L+A D I +W+
Sbjct: 883 SWVHGVMFSP-DGSSFLTASDDQTIRVWE 910
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDI 252
GH V C F G ++ TG D+ I++W DG+LL + S G ++D+
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 253 AI--DNRNILLAAGTVDKTIRIWNLQT 277
D++ ++ A G ++ WN+ T
Sbjct: 1185 CFSPDSKTLVSAGG----YLKWWNVAT 1207
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 48/323 (14%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHLS V V+F G +T +DD I++W + + + EI + +N ++L
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV-LKQEIDVVFQENETMVL 938
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGII--TGVNFCPLEVNGFNYLASTSTDGCIGFW 319
A N++ L I+ G + V+ C L + Y+A DG I
Sbjct: 939 AVD---------NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH-LEYVAFGDEDGAIKII 988
Query: 320 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+ + VF V + +R HI F+ G L + S D ++V+ D
Sbjct: 989 ELP-----NNRVFSSGVGHKKAVR----HI---QFTADGKTLISSSEDSVIQVWNWQTGD 1036
Query: 380 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 439
++ H + V + R +S S DGT +W + I D TC T
Sbjct: 1037 YVF----LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR---IERDF-TCHQGT 1087
Query: 440 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 499
+ ++ K + + D + KIW + LKGH N
Sbjct: 1088 VLSCAISSDATKFSSTSADKT-------------AKIWSFDLLSPLHELKGH-NGCVRCS 1133
Query: 500 SHPFDSRVLLSAGHDGLIIIWDI 522
+ D +L + +G I IW++
Sbjct: 1134 AFSLDGILLATGDDNGEIRIWNV 1156
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI-------A 253
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + A
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
D+ +++AG DK ++ WNL + +GH I + P +G +AS D
Sbjct: 163 DDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKD 217
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
G I W + + M+ + + +FSP +LA + ++V+
Sbjct: 218 GEIMLWN----------LAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVF 263
Query: 374 KMD 376
+D
Sbjct: 264 SLD 266
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 344 PGNAHIL--CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
G++HI+ C+ + G + + S D +R++ V + H V S+
Sbjct: 62 KGHSHIVQDCT-LTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK 117
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGN 174
Query: 462 RWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W
Sbjct: 175 DKMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 521 DILSSK 526
++ + K
Sbjct: 224 NLAAKK 229
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI-------A 253
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + A
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
D+ +++AG DK ++ WNL + +GH I + P +G +AS D
Sbjct: 163 DDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKD 217
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
G I W + + M+ + + +FSP +LA + ++V+
Sbjct: 218 GEIMLWN----------LAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVF 263
Query: 374 KMD 376
+D
Sbjct: 264 SLD 266
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 344 PGNAHIL--CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
G++HI+ C+ + G + + S D +R++ V + H V S+
Sbjct: 62 KGHSHIVQDCT-LTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK 117
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGN 174
Query: 462 RWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W
Sbjct: 175 DKMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 521 DILSSK 526
++ + K
Sbjct: 224 NLAAKK 229
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFN--YLASTSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI-------A 253
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + A
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
D+ +++AG DK ++ WNL + +GH I + P +G +AS D
Sbjct: 163 DDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKD 217
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
G I W + + M+ + + +FSP +LA + ++V+
Sbjct: 218 GEIMLWN----------LAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVF 263
Query: 374 KMD 376
+D
Sbjct: 264 SLD 266
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 344 PGNAHIL--CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
G++HI+ C+ + G + + S D +R++ V + H V S+
Sbjct: 62 KGHSHIVQDCT-LTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK 117
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGN 174
Query: 462 RWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W
Sbjct: 175 DKMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 521 DILSSK 526
++ + K
Sbjct: 224 NLAAKK 229
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI-------A 253
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + A
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
D+ +++AG DK ++ WNL + +GH I + P +G +AS D
Sbjct: 157 DDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKD 211
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
G I W + + M+ + + +FSP +LA + ++V+
Sbjct: 212 GEIMLWN----------LAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVF 257
Query: 374 KMD 376
+D
Sbjct: 258 SLD 260
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 7 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 55
Query: 344 PGNAHIL--CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
G++HI+ C+ + G + + S D +R++ V + H V S+
Sbjct: 56 KGHSHIVQDCT-LTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK 111
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 112 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGN 168
Query: 462 RWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W
Sbjct: 169 DKMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLW 217
Query: 521 DILSSK 526
++ + K
Sbjct: 218 NLAAKK 223
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 130
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 131 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 186
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 187 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 219
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI-------A 253
+GH S V V DK +I++G+ D IK+W + G+ LATL G + +S + A
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
D+ +++AG DK ++ WNL + +GH I + P +G +AS D
Sbjct: 163 DDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKD 217
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
G I W + + M+ + + +FSP +LA + ++V+
Sbjct: 218 GEIMLWN----------LAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATA-TGIKVF 263
Query: 374 KMD 376
+D
Sbjct: 264 SLD 266
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 102/246 (41%), Gaps = 32/246 (13%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 344 PGNAHIL--CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
G++HI+ C+ + G + + S D +R++ V + H V S+
Sbjct: 62 KGHSHIVQDCT-LTADGAYALSASWDKTLRLWD---VATGETYQRFVGHKSDVMSVDIDK 117
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGN 174
Query: 462 RWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
++ A N N FQI+ D + GH + + L + P D ++ SAG DG I++W
Sbjct: 175 DKMVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 521 DILSSK 526
++ + K
Sbjct: 224 NLAAKK 229
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + ++ +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--- 192
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA 262
H V+ + F + +++ +DD I++W + K + LRG + D + +N L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL-LKNSRLL 1065
Query: 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322
+ + D T+++WN+ T V HQG + C + + + +STS D W +
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLS---CDISHDATKF-SSTSADKTAKIWSFD 1121
Query: 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
L + + HE +R N + CS+FS LATG + +R++ +
Sbjct: 1122 LLLPL-----HE-------LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 342 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
+RP + + FS G +A+ D ++V+K ++ +LE++ H D+V +S
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFK---AETGEKLLEIKAHEDEVLCCAFST 673
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+ S D IW N+ T DE ++++ ++S
Sbjct: 674 DDRFIATCSVDKKVKIW--------------NSMTGELVHTYDEHSEQVNCCHFT-NSSH 718
Query: 462 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
++ + + +K+WD + + GHTN V P D ++L S DG + +WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Query: 522 ILSSKQRGY----KWFHNIVEGQGEGALF--DGKWSPDGT 555
S+ +R ++F N+ + Q + + WS DG
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGA 817
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 17/219 (7%)
Query: 156 LLVPNSVKVHNTVNVLRSREYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL 215
L P + +V+ + +E + I+ +NL + V H AV+ F +
Sbjct: 574 LCEPETSEVYQQAKLQAKQEVDNGMLYLEWINKKNITNLSRLVVR-PHTDAVYHACFSED 632
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G+ I + D +++++A G+ L ++ E+ A + +A +VDK ++IWN
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC-IGFWKYKLDIDISKTVFHE 334
T + H VN C + + L +T + C + W + T+F
Sbjct: 693 MTGELVHTYDEHS---EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-QKECRNTMFGH 748
Query: 335 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373
N FSP LA+ S D ++++
Sbjct: 749 TNSVNH-----------CRFSPDDKLLASCSADGTLKLW 776
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 137/353 (38%), Gaps = 69/353 (19%)
Query: 257 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316
+N L + +WN + + ++ GH + GV F P +G ++L S S D I
Sbjct: 857 QNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP---DGSSFLTS-SDDQTI 912
Query: 317 GFWKYKLDIDISKTVFHEPV--MFNE------------RIRPGN-----------AHILC 351
W+ K S + + V +F E R++ N A + C
Sbjct: 913 RLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSC 972
Query: 352 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 411
SP ++A G + + + ++ V++ + +H V IQ++ +S S
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILEL--VNNRI-FQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 412 DGTALIWYYKCSQWRFIRLDMNTC-----LPHTKETSDETNKKIKV-------------- 452
D +W ++ + F+R T L +++ S + +KV
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVC 1089
Query: 453 ---TMVAWDAS-DRWVITAINFNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRV 507
T+++ D S D ++ + + KIW +F+ L + L+GH N + DS +
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIW-SFDLLLPLHELRGH-NGCVRCSAFSVDSTL 1147
Query: 508 LLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW------SPDG 554
L + +G I IW++ + + H EGA G W SPDG
Sbjct: 1148 LATGDDNGEIRIWNVSNG-----ELLHLCAPLSEEGAATHGGWVTDLCFSPDG 1195
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 139/371 (37%), Gaps = 92/371 (24%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG------------------------- 236
GHLS V V+F G +T +DD I+LW +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 237 ----KLLATLRGCSGEI--------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284
+ L + G +G+I S + +A G + I I L
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSR 1005
Query: 285 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF---HEPVMFNER 341
H+ + + F E L S+S D I W ++LD K +F H+ + + R
Sbjct: 1006 FQHKKTVWHIQFTADE----KTLISSSDDAEIQVWNWQLD----KCIFLRGHQETVKDFR 1057
Query: 342 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401
+ N+ +L SF D V+V+ + + + H V S SH
Sbjct: 1058 LLK-NSRLLSWSF------------DGTVKVWNIITGNKEKDFVC---HQGTVLSCDISH 1101
Query: 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461
+F S S D TA IW + + L ++ H N ++ + + D++
Sbjct: 1102 DATKFSSTSADKTAKIWSFD------LLLPLHELRGH--------NGCVRCSAFSVDST- 1146
Query: 462 RWVITAINFNFQIKIWDAFNGDLVQVL--------KGHTNEVFVLESHPFDSRVLLSAGH 513
++ + N +I+IW+ NG+L+ + H V L P D ++L+SAG
Sbjct: 1147 --LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSP-DGKMLISAG- 1202
Query: 514 DGLIIIWDILS 524
G I W++++
Sbjct: 1203 -GYIKWWNVVT 1212
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 286 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345
H ++T + ++ + + S S D I WK D + +R G
Sbjct: 380 AHTDMVTAI---ATPIDNADIIVSASRDKSIILWKLTKD--------DKAYGVAQRRLTG 428
Query: 346 NAHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 404
++H + S G F +GS D +R++ + + + H+ V S+ +S +
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLA---AGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 405 RFVSGSRDGTALIW------YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 458
+ VS SRD T +W Y S+ D +C+ + T T + +WD
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT-----IVSASWD 540
Query: 459 ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 518
+ +K+W+ N L L GHT V + P D + S G DG+++
Sbjct: 541 KT-------------VKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVL 586
Query: 519 IWDILSSKQ 527
+WD+ K+
Sbjct: 587 LWDLAEGKK 595
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 55/247 (22%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 260
+GH V V F IV+ + D IKLW TL C IS+ +R+ +
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--------TLGECKYTISEGGEGHRDWV 520
Query: 261 -------------LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL 307
+ + + DKT+++WNL S L GH G ++ V P +G +
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP---DG-SLC 576
Query: 308 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD 367
AS DG + W D+ K ++ + N I H LC FSP +L + +
Sbjct: 577 ASGGKDGVVLLW----DLAEGKKLYS--LEANSVI-----HALC--FSPNRYWLCAAT-E 622
Query: 368 HHVRVYKMDGVDSPLGI-LEVEEHSDKVD---------------SIQWSHSHLRFVSGSR 411
H ++++ ++ + ++++ ++K D S+ WS SG
Sbjct: 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682
Query: 412 DGTALIW 418
DG +W
Sbjct: 683 DGVIRVW 689
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 118/324 (36%), Gaps = 44/324 (13%)
Query: 216 GEVIVTGADDLLIKLWR-ARDGKLLAT----LRGCSGEISDIAIDNRNILLAAGTVDKTI 270
++IV+ + D I LW+ +D K L G S + D+ + + +G+ D +
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 271 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 330
R+W+L VGH + V F + S S D I W T
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN----RQIVSASRDRTIKLW---------NT 501
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVD--SPLGILE 386
+ +E + C FSP L + + S D V+V+ + S L
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA--- 558
Query: 387 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL------PHTK 440
H+ V ++ S SG +DG L+W + + L+ N+ + P+
Sbjct: 559 --GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLEANSVIHALCFSPNRY 615
Query: 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500
T IK+ WD + ++ + + + + A N + +V S
Sbjct: 616 WLCAATEHGIKI----WDLESKSIVEDLKVDLKAEAEKADNSGPAATKR----KVIYCTS 667
Query: 501 HPF--DSRVLLSAGHDGLIIIWDI 522
+ D L S DG+I +W I
Sbjct: 668 LNWSADGSTLFSGYTDGVIRVWGI 691
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 36/245 (14%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417
+ + S D + ++K+ D G+ + + HS V+ + S +SGS DG +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 418 WYYKC--SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475
W S RF+ HTK+ V VA+ +R +++A + + IK
Sbjct: 457 WDLAAGVSTRRFV--------GHTKD----------VLSVAFSLDNRQIVSA-SRDRTIK 497
Query: 476 IWDAFNGDLVQVL----KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGY 530
+W+ G+ + +GH + V + P + ++SA D + +W++ + K R
Sbjct: 498 LWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 531 KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDY 590
H G + SPDG+ CA G +L++ L K+ ++ H
Sbjct: 557 LAGHT-------GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Query: 591 RTLNR 595
+ NR
Sbjct: 610 FSPNR 614
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 33/185 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA--IDNRNI 259
GH V V+ G+ ++G+ D ++LW G G + ++ +A +DNR I
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 260 LLAAGTVDKTIRIWNLQTLAPISVLV-----GHQGIITGVNFCPLEVNGFNYLASTSTDG 314
+ A + D+TI++WN TL + GH+ ++ V F P + + S S D
Sbjct: 488 VSA--SRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFSPNTLQ--PTIVSASWDK 541
Query: 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA----HILCSSFSPGGLFLATGSGDHHV 370
+ W + N ++R A ++ + SP G A+G D V
Sbjct: 542 TVKVWN----------------LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585
Query: 371 RVYKM 375
++ +
Sbjct: 586 LLWDL 590
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 192 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 251
SN + GH V V G + +G D ++ LW +GK L +L S +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Query: 252 IAIDNRNILLAAGTVDKTIRIWNLQT 277
NR L AA + I+IW+L++
Sbjct: 609 CFSPNRYWLCAA--TEHGIKIWDLES 632
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI------ 254
+GH S V V DK I++G+ D IK+W + G+ LATL G + +S + +
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 255 DNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
D+ ++ + + DK ++ WNL + +GH I + P +G +AS DG
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP---DG-TLIASAGKDG 218
Query: 315 CIGFW 319
I W
Sbjct: 219 EIXLW 223
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 30/245 (12%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + N L S S D + WK D F PV R
Sbjct: 13 LEGHNGWVTSL---ATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV----RSF 61
Query: 344 PGNAHILCS-SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402
G++HI+ + + G + + S D +R++ + ++ + H V S+
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---HKSDVXSVDIDKK 118
Query: 403 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 462
+SGSRD T +W K Q L N + + +E VT+++ A +
Sbjct: 119 ASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIIS--AGND 175
Query: 463 WVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
+ A N N FQI+ D + GH + + L + P D ++ SAG DG I +W+
Sbjct: 176 KXVKAWNLNQFQIE------ADFI----GHNSNINTLTASP-DGTLIASAGKDGEIXLWN 224
Query: 522 ILSSK 526
+ + K
Sbjct: 225 LAAKK 229
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275
G ++ + D ++LW G+ G ++ + ID + + +G+ DKTI++W +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI 136
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA--STSTDGCIGFW---KYKLDIDISKT 330
+ ++ L+GH ++ V P E + + S D + W +++++ D
Sbjct: 137 KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF--- 192
Query: 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ H N++I + SP G +A+ D + ++ +
Sbjct: 193 IGH------------NSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 255
Q ++ H+S + + F GE +++ + D+ +K+W +DG TL G ++DIAI
Sbjct: 128 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
+R + + ++D TIR+W T I + GVN L V
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 233
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAID 255
Q ++ H+S + + F GE +++ + D+ +K+W +DG TL G ++DIAI
Sbjct: 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
+R + + ++D TIR+W T I + GVN L V
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 252 IAIDNRNILLAAGTVDKTIRIWNLQTLAPI--SVLV-GHQGIITGVNFCPLEVNGFNYLA 308
+A + LLA+ D+ IRIW + + I SVL GHQ + V + P NYLA
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----NYLA 77
Query: 309 STSTDGCIGFWKYKLDIDISKTVF--HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 366
S S D WK D T HE NE + +++P G LAT S
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHE----NE--------VKSVAWAPSGNLLATCSR 125
Query: 367 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT 414
D V V+++D D + + H+ V + W S S S D T
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 58/143 (40%), Gaps = 22/143 (15%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWR----------ARDG-----KLLATLRGC- 245
GH S V+ + FD G+ + + +DD +++WR A G K + TL G
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 246 SGEISDIAIDNRNILLAAGTVDKTIRIW----NLQTLAPISVLVG--HQGIITGVNFCPL 299
S I DIA LA D IR++ N P L HQ VN
Sbjct: 252 SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311
Query: 300 EVNGFNYLASTSTDGCIGFWKYK 322
LAS S DG + FWKY+
Sbjct: 312 NPKEPGLLASCSDDGEVAFWKYQ 334
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 23/180 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNRNI 259
GH V V + G + + + D +W+ D + + TL G E+ +A
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 260 LLAAGTVDKTIRIWNL---QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316
LLA + DK++ +W + +SVL H + V + P + LAS S D +
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ----ELLASASYDDTV 174
Query: 317 GFWKYKLDIDISKTVF--HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 374
++ + D + HE +++ +F P G LA+ S D VR+++
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWS------------LAFDPSGQRLASCSDDRTVRIWR 222
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 353 SFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
+++P G LA+ GD +R++ +G + E H V + WS S S D
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472
T IW D C+ + +E V VAW S ++ + +
Sbjct: 83 ATTCIWKKN--------QDDFECVTTLEGHENE------VKSVAWAPSGN-LLATCSRDK 127
Query: 473 QIKIWDAFNGD---LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 517
+ +W+ D V VL HT +V + HP +L SA +D +
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTV 174
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 19/219 (8%)
Query: 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRAR-DGKLLATL--RGCSGEISDIAIDNRNILL 261
S + + ++ G ++ + D I++W D + ++ G + +A L
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 262 AAGTVDKTIRIW--NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 319
A+ + D T IW N ++ L GH+ + V + P N LA+ S D + W
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP----SGNLLATCSRDKSVWVW 132
Query: 320 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+ + + +E V H++ + P LA+ S D V++Y+ + D
Sbjct: 133 E------VDEEDEYECVSVLNSHTQDVKHVV---WHPSQELLASASYDDTVKLYREEE-D 182
Query: 380 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
+ +E H V S+ + S R S S D T IW
Sbjct: 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 455 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQ-------VLKGHTNEVFVLESHPFDSRV 507
+AW + VI + + + + +W+ +G LV L+GHT V ++ HP V
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 508 LLSAGHDGLIIIWDI 522
LLSAG D +I++WD+
Sbjct: 147 LLSAGXDNVILVWDV 161
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 443 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL-------------- 488
+D+ + ++V+ WD+ A+N F I +A G VL
Sbjct: 21 ADQCYEDVRVSQTTWDSG----FCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 489 -KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
GHT V + P + V+ S D +++W+I
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEI 111
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 387 VEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 445
V H+ V I W H+ SGS D T ++W D LP +
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIP---------DGGLVLPLREPVITL 127
Query: 446 TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488
+V +VAW + + V+ + + I +WD G V L
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 45/313 (14%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GE-ISDIAIDNRNILLAAGTVDKTIRIW 273
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 127 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 186 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 232
Query: 334 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 391
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 233 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 392 DKVDSIQWS---HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448
V ++ W + L G+ D IW CS CL S
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV-CS---------GACLSAVDAHS----- 332
Query: 449 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 507
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 333 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 389
Query: 508 LLSAGHDGLIIIW 520
+ SA D + +W
Sbjct: 390 VASAAADETLRLW 402
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 181 SRFLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL- 238
SR I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 276
Query: 239 ---LATLRGCSGEISDIAID--NRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIIT 292
L T G + +A N+L GT D+ IRIWN+ + A +S + H + +
Sbjct: 277 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 336
Query: 293 GVNFCP-----LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347
+ + P + +GF + WKY +++ H +
Sbjct: 337 -ILWSPHYKELISGHGF-------AQNQLVIWKYPTMAKVAELKGH------------TS 376
Query: 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+L + SP G +A+ + D +R+++ +D
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWRCFELD 408
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 455 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQ-------VLKGHTNEVFVLESHPFDSRV 507
+AW + VI + + + + +W+ +G LV L+GHT V ++ HP V
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 508 LLSAGHDGLIIIWDI 522
LLSAG D +I++WD+
Sbjct: 147 LLSAGCDNVILVWDV 161
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 443 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK------------- 489
+D+ + ++V+ WD+ A+N F I +A G VL
Sbjct: 21 ADQCYEDVRVSQTTWDSG----FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL 76
Query: 490 --GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
GHT V + P + V+ S D +++W+I
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)
Query: 324 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 383
D+ +S+T + + P ++C + S GG FL G K VD +
Sbjct: 27 DVRVSQTTWDSGFC---AVNPKFMALICEA-SGGGAFLVLPLG-------KTGRVDKNVP 75
Query: 384 ILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 442
+ V H+ V I W H+ SGS D T ++W D LP +
Sbjct: 76 L--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP---------DGGLVLPLREPV 124
Query: 443 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488
+V +VAW + + V+ + + I +WD G V L
Sbjct: 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 124/313 (39%), Gaps = 45/313 (14%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GE-ISDIAIDNRNILLAAGTVDKTIRIW 273
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 116 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 175 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 221
Query: 334 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 391
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 222 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 392 DKVDSIQWS---HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448
V ++ W + L G+ D IW CS CL S
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV-CS---------GACLSAVDAHS----- 321
Query: 449 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 507
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 322 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 378
Query: 508 LLSAGHDGLIIIW 520
+ SA D + +W
Sbjct: 379 VASAAADETLRLW 391
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 181 SRFLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL- 238
SR I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 265
Query: 239 ---LATLRGCSGEISDIAID--NRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIIT 292
L T G + +A N+L GT D+ IRIWN+ + A +S + H + +
Sbjct: 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 325
Query: 293 GVNFCP-----LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347
+ + P + +GF + WKY +++ H +
Sbjct: 326 -ILWSPHYKELISGHGF-------AQNQLVIWKYPTMAKVAELKGH------------TS 365
Query: 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+L + SP G +A+ + D +R+++ +D
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWRCFELD 397
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 122/328 (37%), Gaps = 45/328 (13%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRA-RDGKLLATLRGCSGEISDIAIDNRNIL 260
GH + V C+ + K IV+ + D + +W + K A C+ ++ A
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA-CAYAPSGCA 120
Query: 261 LAAGTVDKTIRIW------NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
+A G +D ++ N A + H ++ +F N + + S DG
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF----TNSDMQILTASGDG 176
Query: 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRV 372
W D++ + + + A +LC +P G +G D V
Sbjct: 177 TCALW----DVESGQLL--------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 373 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 432
+ M S + E H V+S+++ S F SGS D T ++ +R D
Sbjct: 225 WDMR---SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD--------LRADR 273
Query: 433 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492
+ ++KE+ + V + S R + N ++ I +WD G V +L GH
Sbjct: 274 EVAI-YSKES-----IIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSILFGHE 326
Query: 493 NEVFVLESHPFDSRVLLSAGHDGLIIIW 520
N V L P D S D + +W
Sbjct: 327 NRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
+ LKGH N+V ++ D R ++S+ DG +I+WD ++ +
Sbjct: 58 RTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNK 98
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 218 VIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 270
V+++G+ D + +W+ + G L G + +SD+A+ N + + DKT+
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 271 RIWNLQTLAPISVLVGHQGIITGVNFCP 298
R+W+L+T VGHQ + V F P
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSP 128
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%)
Query: 383 GILEVEEHSDKVDSIQWSHSHLR------FVSGSRDGTALIW-YYKCSQWRFIRLDMNTC 435
GILE HSD V SI S +SGSRD T +IW Y+ Q + +
Sbjct: 15 GILE--GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 436 LPHTKETSDE--TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 493
H SD + + +WD + +++WD G + GH +
Sbjct: 73 TGHNHFVSDLALSQENCFAISSSWDKT-------------LRLWDLRTGTTYKRFVGHQS 119
Query: 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523
EV+ + P D+R +LSAG + I +W+IL
Sbjct: 120 EVYSVAFSP-DNRQILSAGAEREIKLWNIL 148
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 33/203 (16%)
Query: 189 HKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE 248
HK H+V+ LS C ++ + D ++LW R G G E
Sbjct: 69 HKALTGHNHFVSDLALSQENCFA--------ISSSWDKTLRLWDLRTGTTYKRFVGHQSE 120
Query: 249 ISDIAI--DNRNILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPL----- 299
+ +A DNR IL A ++ I++WN+ S H ++ V + P+
Sbjct: 121 VYSVAFSPDNRQILSAGA--EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN 178
Query: 300 EVNGFN-YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358
+V F Y AS DG + W I + + N + L S SP G
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNTNFQI-----------RYTFKAHESNVNHL--SISPNG 225
Query: 359 LFLATGSGDHHVRVYKMDGVDSP 381
++ATG D + ++ + + P
Sbjct: 226 KYIATGGKDKKLLIWDILNLTYP 248
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 75/272 (27%)
Query: 260 LLAAGTVDKTIRIWNLQTLA-------PISVLVGHQGIITGVNFCPLEVNGFNYLASTST 312
+L +G+ DKT+ IW L P L GH ++ + + S+S
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC----FAISSSW 96
Query: 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 372
D + W + + V H+ +++ P N IL + + +++
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL------------SAGAEREIKL 144
Query: 373 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 432
+ + G + E E HSD V +++S I
Sbjct: 145 WNILG-ECKFSSAEKENHSDWVSCVRYSP--------------------------IMKSA 177
Query: 433 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492
N P + V WD + N NFQI+ K H
Sbjct: 178 NKVQPFAPYFAS----------VGWDGR----LKVWNTNFQIRY----------TFKAHE 213
Query: 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524
+ V L P + + + + G D ++IWDIL+
Sbjct: 214 SNVNHLSISP-NGKYIATGGKDKKLLIWDILN 244
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 40/227 (17%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLRGCSGEISDIAIDNRNIL 260
GH + V C+ +++ V+ +G+ I R + TL+G S E+ +A + +
Sbjct: 174 GHQARVGCLSWNR--HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ 231
Query: 261 LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
LA+G D ++IW+ ++ P H + V +CP + N T D I FW
Sbjct: 232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT-MDKQIHFWN 290
Query: 321 YKL-----DIDISKTVF------HEPVMFNERIRPGN-------------------AH-- 348
+D V H + + P N AH
Sbjct: 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350
Query: 349 -ILCSSFSPGGLFLATGSGDHHV---RVYKMDGVDSPLGILEVEEHS 391
+L S+ SP G L+T + D ++ RVY D V P+ I + S
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 103/284 (36%), Gaps = 57/284 (20%)
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAST--S 311
+D N+ + A +++ + +WN + +S L E + Y+AS S
Sbjct: 99 LDWSNLNVVAVALERNVYVWNADS-GSVSALA--------------ETDESTYVASVKWS 143
Query: 312 TDGC---IGFWKYKLDIDISKTVFHEPVMFNERIRPG----NAHILCSSFSPGGLFLATG 364
DG +G +DI ++ M + R G N H+L S G +
Sbjct: 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIH---- 199
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 424
H VR+ + +G L+ HS +V + W L+ SG D IW + S
Sbjct: 200 --HHDVRI-----ANHQIGTLQ--GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI 250
Query: 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--ASDRWVITAINFNFQIKIWDAFNG 482
+F + TN V VAW S+ + QI W+A G
Sbjct: 251 PKFTK----------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 483 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILSS 525
V + + +V L P ++ + G D + IW SS
Sbjct: 295 ARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 30/245 (12%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + P + + S S D I WK D +T + P +R
Sbjct: 11 LKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRD----ETNYGIP----QRAL 59
Query: 344 PGNAHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402
G++H + S G F +GS D +R++ + + H+ V S+ +S
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTKDVLSVAFSSD 116
Query: 403 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 462
+ + VSGSRD T +W NT DE++ + + S
Sbjct: 117 NRQIVSGSRDKTIKLW--------------NTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 463 WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+I + ++ +K+W+ N L GHT + + P D + S G DG ++WD+
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL 221
Query: 523 LSSKQ 527
K
Sbjct: 222 NEGKH 226
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH V V+ G+ ++G+ D ++LW G G + ++ +A + N +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 262 AAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
+G+ DKTI++WN + +V H ++ V F P N + S D + W
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI--IVSCGWDKLVKVWN 178
Query: 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGV 378
+ + H + + P + LC+S G + G H +Y +DG
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---LYTLDGG 233
Query: 379 D 379
D
Sbjct: 234 D 234
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 217 EVIVTGADDLLIKLWR-ARD----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 271
++I++ + D I +W+ RD G LRG S +SD+ I + +G+ D T+R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 272 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331
+W+L T VGH + V F + S S D I W + + K
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN----RQIVSGSRDKTIKLWN---TLGVCKYT 141
Query: 332 FHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEE 389
+ + + C FSP + + D V+V+ + + L +
Sbjct: 142 VQD--------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKTNHI-G 190
Query: 390 HSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
H+ ++++ S SG +DG A++W
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD--------- 251
+GH V V F IV+G+ D IKLW TL C + D
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN--------TLGVCKYTVQDESHSEWVSC 153
Query: 252 --IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 309
+ ++ N ++ + DK +++WNL + +GH G + V P +G + AS
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP---DG-SLCAS 209
Query: 310 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369
DG W D++ K ++ G I FSP +L +G
Sbjct: 210 GGKDGQAMLW----DLNEGKHLY---------TLDGGDIINALCFSPNRYWLCAATGP-S 255
Query: 370 VRVYKMDG---VDSPLGILEVEEHSDKVD-----SIQWSHSHLRFVSGSRDGTALIW 418
++++ ++G VD EV S K + S+ WS +G D +W
Sbjct: 256 IKIWDLEGKIIVDELK--QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417
+ + S D + ++K+ ++ GI + + HS V + S +SGS DGT +
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 418 W--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475
W + RF+ HTK+ V VA+ + +R +++ + + IK
Sbjct: 90 WDLTTGTTTRRFV--------GHTKD----------VLSVAFSSDNRQIVSG-SRDKTIK 130
Query: 476 IWDAFNGDLVQVL-KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGYKWF 533
+W+ V + H+ V + P S +++S G D L+ +W++ + K +
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 534 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 571
H G L SPDG+ CA G +++ L
Sbjct: 191 HT-------GYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 185 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 244
++ +N + ++GH + V G + +G D LW +GK L TL G
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 245 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 276
G+I + + N +I+IW+L+
Sbjct: 233 --GDIINALCFSPNRYWLCAATGPSIKIWDLE 262
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 30/245 (12%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GH G +T + P + + S S D I WK D +T + P +R
Sbjct: 34 LKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRD----ETNYGIP----QRAL 82
Query: 344 PGNAHILCSS-FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402
G++H + S G F +GS D +R++ + + H+ V S+ +S
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT---TGTTTRRFVGHTKDVLSVAFSSD 139
Query: 403 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 462
+ + VSGSRD T +W NT DE++ + + S
Sbjct: 140 NRQIVSGSRDKTIKLW--------------NTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 463 WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+I + ++ +K+W+ N L GHT + + P D + S G DG ++WD+
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDL 244
Query: 523 LSSKQ 527
K
Sbjct: 245 NEGKH 249
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH V V+ G+ ++G+ D ++LW G G + ++ +A + N +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 262 AAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK 320
+G+ DKTI++WN + +V H ++ V F P N + S D + W
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI--IVSCGWDKLVKVWN 201
Query: 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGV 378
+ + H + + P + LC+S G + G H +Y +DG
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---LYTLDGG 256
Query: 379 D 379
D
Sbjct: 257 D 257
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 217 EVIVTGADDLLIKLWR-ARD----GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 271
++I++ + D I +W+ RD G LRG S +SD+ I + +G+ D T+R
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 272 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331
+W+L T VGH + V F + S S D I W + + K
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN----RQIVSGSRDKTIKLWN---TLGVCKYT 164
Query: 332 FHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEE 389
+ + + C FSP + + D V+V+ + + L +
Sbjct: 165 VQD--------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL--ANCKLKTNHI-G 213
Query: 390 HSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
H+ ++++ S SG +DG A++W
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 47/237 (19%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD--------- 251
+GH V V F IV+G+ D IKLW TL C + D
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN--------TLGVCKYTVQDESHSEWVSC 176
Query: 252 --IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 309
+ ++ N ++ + DK +++WNL + +GH G + V P +G + AS
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP---DG-SLCAS 232
Query: 310 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369
DG W D++ K ++ G I FSP +L +G
Sbjct: 233 GGKDGQAMLW----DLNEGKHLY---------TLDGGDIINALCFSPNRYWLCAATGP-S 278
Query: 370 VRVYKMDG---VDSPLGILEVEEHSDKVD-----SIQWSHSHLRFVSGSRDGTALIW 418
++++ ++G VD EV S K + S+ WS +G D +W
Sbjct: 279 IKIWDLEGKIIVDELK--QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417
+ + S D + ++K+ ++ GI + + HS V + S +SGS DGT +
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 418 W--YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475
W + RF+ HTK+ V VA+ + +R +++ + + IK
Sbjct: 113 WDLTTGTTTRRFV--------GHTKD----------VLSVAFSSDNRQIVSG-SRDKTIK 153
Query: 476 IWDAFNGDLVQVL-KGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQRGYKWF 533
+W+ V + H+ V + P S +++S G D L+ +W++ + K +
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 534 HNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 571
H G L SPDG+ CA G +++ L
Sbjct: 214 HT-------GYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 185 MISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 244
++ +N + ++GH + V G + +G D LW +GK L TL G
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 245 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 276
G+I + + N +I+IW+L+
Sbjct: 256 --GDIINALCFSPNRYWLCAATGPSIKIWDLE 285
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV 266
+ + + G+ + +GA D +I ++ GKLL TL G + I + + LL +
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 267 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCP 298
D I+I+++Q L GH + V FCP
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 217 EVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 274
E +VTG+ D L+K+W+ RD + L +L G + + I + + A+ ++D IR+W+
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 275 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 334
L+ I + + F P YLA+ + G + ++ K +
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDS----QYLATGTHVGKVNI----FGVESGKKEY-- 158
Query: 335 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSD 392
+ IL ++SP G +LA+G+ D + ++ D G L +E H+
Sbjct: 159 ------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIF-----DIATGKLLHTLEGHAM 207
Query: 393 KVDSIQWSHSHLRFVSGSRDG 413
+ S+ +S V+ S DG
Sbjct: 208 PIRSLTFSPDSQLLVTASDDG 228
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 474 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 529
I I+D G L+ L+GH + L P DS++L++A DG I I+D+ + G
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAG 242
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH + + F +++VT +DD IK++ + L TL G + + ++A +
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNF 296
+ + DK++++W++ T + HQ + GV +
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 40/249 (16%)
Query: 261 LAAGTVDKTIRIWNL--QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318
+ G++D +++W + L L GHQ + V+ + AS+S D I
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS----HTLPIAASSSLDAHIRL 106
Query: 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV 378
W D++ K + + I G +FSP +LATG+ HV + GV
Sbjct: 107 W----DLENGKQI--------KSIDAGPVDAWTLAFSPDSQYLATGT---HVGKVNIFGV 151
Query: 379 DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-LP 437
+S ++ + SI +S SG+ DG I D+ T L
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINI------------FDIATGKLL 199
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
HT E + + + + + ++TA + + IKI+D + +L L GH + V
Sbjct: 200 HTLE-----GHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSGHASWVLN 253
Query: 498 LESHPFDSR 506
+ P D+
Sbjct: 254 VAFCPDDTH 262
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH V V + + + D I+LW +GK + ++ + +A + L
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
A GT + I+ +++ L I + + P +G YLAS + DG I
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP---DG-KYLASGAIDGIINI--- 190
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKM 375
DI K + G+A I +FSP L T S D ++++Y +
Sbjct: 191 -FDIATGKLL---------HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHL+ ++ + + ++++ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 262 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 377
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
+ L+GH +++ + DSR+LLSA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK 89
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 354 FSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412
FS G LATGS D +++ + D L +L+ H + S+ W +GS D
Sbjct: 22 FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 413 GTALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFN 471
T IW + S R +D+ + H E V VAW ++D + + + +
Sbjct: 80 STVSIWAKEESADRTFEMDLLAIIEGHENE----------VKGVAW-SNDGYYLATCSRD 128
Query: 472 FQIKIWDAFNG----DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
+ IW+ + + VL+ H+ +V + HP ++ +L S+ +D + IW
Sbjct: 129 KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIW 180
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 68/275 (24%), Positives = 105/275 (38%), Gaps = 44/275 (16%)
Query: 177 SGPLSRFLMISSHKYSNLRQHYV--NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLW--- 231
+G R + + S KY + V H A+ V + ++ G+ D + +W
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88
Query: 232 ----RARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL----QTLAPISV 283
R + LLA + G E+ +A N LA + DK++ IW + ISV
Sbjct: 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWK-YKLDIDISKTVFHEPVMFNERI 342
L H + V + P E LAS+S D + WK Y D + +
Sbjct: 149 LQEHSQDVKHVIWHPSEA----LLASSSYDDTVRIWKDYDDDWECVAVL----------- 193
Query: 343 RPGNAH---ILCSSF--SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------HS 391
N H + S F + G L +GS D VRV+K G D V E H
Sbjct: 194 ---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 392 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 426
+V ++ W + L S DG ++ +W+
Sbjct: 251 RQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWK 284
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 260 LLAAGTVDKTIRIWNLQ----TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ D+ I++ +++ TL + H+ I V + P + LA+ S D
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----SLLAAGSFDST 81
Query: 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM 375
+ W + D F ++ I + ++S G +LAT S D V +++
Sbjct: 82 VSIWAKEESAD---RTFEMDLL--AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 376 DGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
D + V +EHS V + W S S S D T IW
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHL+ ++ + + ++++ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 262 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-----DDNQIVTSSGDTTCA 167
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 377
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---------- 262
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
+ L+GH +++ + DSR+LLSA DG +IIWD ++ +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK 89
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH + C F + IVT + D LW G+ T G +G++ +++ L
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+G D + ++W+++ GH+ I + F P NG N A+ S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP---NG-NAFATGSDDATCRLFDL 255
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
+ D ++ T H+ ++ I SFS G L G D + V+ D
Sbjct: 256 RADQEL-MTYSHDNII---------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
G+L H ++V + + + +GS D IW
Sbjct: 306 -GVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 262 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-----DNQIVTSSGDTTCA 167
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 377
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------------- 259
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 260 -ELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGAL 545
+ L+GH +++ + DSR+L+SA DG +IIWD ++ + H I +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK-----VHAIP--LRSSWV 100
Query: 546 FDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNR 595
++P G A +Y L + + REL HT Y + R
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 219 IVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNL- 275
+++G+DDL +KLW + L T G + +A + ++ A+G +D+T+++W+L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322
Q+ ++ G + + V++ PL Y+ + S D I W Y+
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDDLTIKIWDYQ 216
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 277
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 336
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 337 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 397 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 436
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 349
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 410 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 462
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 463 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH + C F + IVT + D LW G+ T G +G++ +++ L
Sbjct: 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+G D + ++W+++ GH+ I + F P NG N A+ S D +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP---NG-NAFATGSDDATCRLFDL 255
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
+ D ++ T H+ ++ I SFS G L G D + V+ D
Sbjct: 256 RADQEL-MTYSHDNII---------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
G+L H ++V + + + +GS D IW
Sbjct: 306 -GVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 262 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-----DNQIVTSSGDTTCA 167
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 377
W + + H ++ S +P +G+ D +++
Sbjct: 168 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 212
Query: 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
V + H +++I + + F +GS D T ++ + Q
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------------- 259
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 260 -ELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 317
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
L D + + D + IW+
Sbjct: 318 LGVTD-DGMAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGAL 545
+ L+GH +++ + DSR+L+SA DG +IIWD ++ + H I +
Sbjct: 49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK-----VHAIP--LRSSWV 100
Query: 546 FDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNR 595
++P G A +Y L + + REL HT Y + R
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 35/236 (14%)
Query: 256 NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 308
N N L + + D TI +W++ + + ++ GH ++ V + L + F
Sbjct: 194 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G 250
Query: 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGD 367
S + D + W D +P + + A + C SF+P F LATGS D
Sbjct: 251 SVADDQKLMIW------DTRNNNTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSAD 301
Query: 368 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWR 426
V ++ + + L + E H D++ +QWS H+ S D +W
Sbjct: 302 KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
Query: 427 FIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
D P H T+ K++ +W+ ++ W+I +++ + +++W
Sbjct: 360 QSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 452
LR ++G L W + + D +T CL T E T V
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 236
Query: 453 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 509
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 237 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 510 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 568
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 297 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 350
Query: 569 YGLGGFKRPQNI-------PRELFFH 587
+ L Q+ P LF H
Sbjct: 351 WDLSKIGEEQSTEDAEDGPPELLFIH 376
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDG---KLLATLRGCSGEISDIAID-N 256
GH + V V + L E + + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 231 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 257 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 291 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 347
Query: 316 IGFW 319
+ W
Sbjct: 348 LHVW 351
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 414
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 415 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 258 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 303
Query: 474 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 304 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 179 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 229
Query: 344 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 230 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 396 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 454
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 284 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 338
Query: 455 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 508
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 339 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 396
Query: 509 LSAGHDGLIIIWDI 522
S D ++ +W +
Sbjct: 397 CSVSEDNIMQVWQM 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 35/236 (14%)
Query: 256 NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 308
N N L + + D TI +W++ + + ++ GH ++ V + L + F
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G 248
Query: 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGD 367
S + D + W D +P + + A + C SF+P F LATGS D
Sbjct: 249 SVADDQKLMIW------DTRNNNTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSAD 299
Query: 368 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWR 426
V ++ + + L + E H D++ +QWS H+ S D +W
Sbjct: 300 KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
Query: 427 FIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
D P H T+ K++ +W+ ++ W+I +++ + +++W
Sbjct: 358 QSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDG---KLLATLRGCSGEISDIAID-N 256
GH + V V + L E + + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 257 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 345
Query: 316 IGFW 319
+ W
Sbjct: 346 LHVW 349
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 452
LR ++G L W + + D +T CL T E T V
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 234
Query: 453 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 509
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 235 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 510 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 568
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 295 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 348
Query: 569 YGLGGFKRPQNI-------PRELFFH 587
+ L Q+ P LF H
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIH 374
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 414
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 415 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 256 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 301
Query: 474 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 302 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 177 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 227
Query: 344 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 228 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 396 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 454
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 282 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336
Query: 455 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 508
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 337 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394
Query: 509 LSAGHDGLIIIWDI 522
S D ++ +W +
Sbjct: 395 CSVSEDNIMQVWQM 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 35/236 (14%)
Query: 256 NRNILLAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA 308
N N L + + D TI +W++ + + ++ GH ++ V + L + F
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF---G 252
Query: 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGD 367
S + D + W D +P + + A + C SF+P F LATGS D
Sbjct: 253 SVADDQKLMIW------DTRNNNTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSAD 303
Query: 368 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWR 426
V ++ + + L + E H D++ +QWS H+ S D +W
Sbjct: 304 KTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
Query: 427 FIRLDMNTCLP-----HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
D P H T+ K++ +W+ ++ W+I +++ + +++W
Sbjct: 362 QSTEDAEDGPPELLFIHGGHTA-------KISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 28/206 (13%)
Query: 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNT-CLPHTKETSDE----------TNKKIKV 452
LR ++G L W + + D +T CL T E T V
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVV 238
Query: 453 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLL 509
VAW + ++ + ++ IWD N + + + HT EV L +P+ +L
Sbjct: 239 EDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 510 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLV 568
+ D + +WD+ + K + H+ + E +F +WSP + T A + + L V
Sbjct: 299 TGSADKTVALWDLRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHV 352
Query: 569 YGLGGFKRPQNI-------PRELFFH 587
+ L Q+ P LF H
Sbjct: 353 WDLSKIGEEQSTEDAEDGPPELLFIH 378
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDG---KLLATLRGCSGEISDIAID-N 256
GH + V V + L E + + ADD + +W R+ K T+ + E++ ++ +
Sbjct: 233 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 257 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 293 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 349
Query: 316 IGFW 319
+ W
Sbjct: 350 LHVW 353
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 360 FLATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGT 414
+L + S DH + ++ ++ +++ + H+ V+ + W H F S + D
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 415 ALIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473
+IW + + NT P HT + +V ++++ +++ + +
Sbjct: 260 LMIWDTR---------NNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGSADKT 305
Query: 474 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+ +WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 306 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 37/254 (14%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343
L GHQ G+++ P +NG YL S S D I W DI+ T V+ + I
Sbjct: 181 LRGHQKEGYGLSWNP-NLNG--YLLSASDDHTICLW------DINATPKEHRVIDAKNIF 231
Query: 344 PGNA--------HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395
G+ H+L S + + D + ++ ++ V+ H+ +V+
Sbjct: 232 TGHTAVVEDVAWHLLHESL------FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 396 SIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 454
+ ++ +S +GS D T +W R ++L +++ H E T+
Sbjct: 286 CLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDEIFQVQWSPHNETI 340
Query: 455 VAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVL 508
+A +DR W ++ I + DA +G +L+ + GHT ++ +P + ++
Sbjct: 341 LASSGTDRRLHVWDLSKIGEEQSTE--DAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 398
Query: 509 LSAGHDGLIIIWDI 522
S D ++ +W +
Sbjct: 399 CSVSEDNIMQVWQM 412
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH + C F + IVT + D LW G+ T G +G++ +++ L
Sbjct: 152 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 210
Query: 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321
+G D + ++W+++ GH+ I + F P NG N A+ S D +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP---NG-NAFATGSDDATCRLFDL 266
Query: 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381
+ D ++ T H+ ++ I SFS G L G D + V+ D
Sbjct: 267 RADQEL-MTYSHDNII---------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 382 LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
G+L H ++V + + + +GS D IW
Sbjct: 317 -GVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/324 (18%), Positives = 118/324 (36%), Gaps = 40/324 (12%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GHL+ ++ + + ++V+ + D + +W + + + S + A +
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 123
Query: 262 AAGTVDKTIRIWNLQTL-APISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317
A G +D I+NL+T + V L GH G ++ F N + ++S D
Sbjct: 124 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-----DNQIVTSSGDTTCA 178
Query: 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDG 377
W + + H ++ S +P +G+ D +++
Sbjct: 179 LWDIETGQQTTTFTGH------------TGDVMSLSLAPDTRLFVSGACDASAKLWD--- 223
Query: 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437
V + H +++I + + F +GS D T ++ + Q
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------------- 270
Query: 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
T N +T V++ S R ++ + +F +WDA D VL GH N V
Sbjct: 271 -ELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSC 328
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
L D + + D + IW+
Sbjct: 329 LGVTD-DGMAVATGSWDSFLKIWN 351
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGAL 545
+ L+GH +++ + DSR+L+SA DG +IIWD ++ + H I +
Sbjct: 60 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK-----VHAIP--LRSSWV 111
Query: 546 FDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNR 595
++P G A +Y L + + REL HT Y + R
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR 161
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 219 IVTGADDLLIKLWRARDG-KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNL- 275
+++G+DDL +KLW + L T G + +A + ++ A+G +D+T+++W+L
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322
Q+ ++ G + + V++ PL Y+ + S D I W Y+
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKP--YMITASDDLTIKIWDYQ 216
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 349
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 410 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 462
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 463 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 21/224 (9%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 277
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 336
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 337 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 397 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCLP 437
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 45/313 (14%)
Query: 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCS-GE-ISDIAIDNRNILLAAGTVDKTIRIW 273
G V+ D+ + LW A G +L L+ GE IS +A LA GT +++W
Sbjct: 36 GNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333
++Q + + H + +++ N + L+S S G I + D+ +++ H
Sbjct: 95 DVQQQKRLRNMTSHSARVGSLSW-----NSY-ILSSGSRSGHI----HHHDVRVAE---H 141
Query: 334 EPVMFNERIRPGNAHILCS-SFSPGGLFLATGSGDHHVRVY-KMDGVDSPLGILEVEEHS 391
+ G++ +C ++P G LA+G D+ V V+ G + + +H
Sbjct: 142 HVATLS-----GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 392 DKVDSIQWS---HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448
V ++ W + L G+ D R IR+ N C + +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSD-------------RHIRI-WNVC---SGACLSAVDA 239
Query: 449 KIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 507
+V + W + +I+ F Q+ IW V LKGHT+ V L P D
Sbjct: 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGAT 298
Query: 508 LLSAGHDGLIIIW 520
+ SA D + +W
Sbjct: 299 VASAAADETLRLW 311
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 33/212 (15%)
Query: 181 SRFLMISSHKYSNLRQHYVNL-GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL- 238
SR I H H L GH V + + G + +G +D L+ +W + G+
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185
Query: 239 ---LATLRGCSGEISDIAID--NRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIIT 292
L T G + +A N+L GT D+ IRIWN+ + A +S + H + +
Sbjct: 186 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS 245
Query: 293 GVNFCP-----LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347
+ + P + +GF + WKY +++ H +
Sbjct: 246 -ILWSPHYKELISGHGF-------AQNQLVIWKYPTMAKVAELKGH------------TS 285
Query: 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVD 379
+L + SP G +A+ + D +R+++ +D
Sbjct: 286 RVLSLTMSPDGATVASAAADETLRLWRCFELD 317
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 261 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
L + + D TI +W++ + + ++ GH ++ V++ L + F S + D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF---GSVADD 249
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 372
+ W + + + SK + + A + C SF+P F LATGS D V +
Sbjct: 250 QKLMIWDTRSN-NTSKP--------SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 373 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 431
+ + + L + E H D++ +QWS H+ S D + + W ++
Sbjct: 301 WDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGTD-------RRLNVWDLSKIG 351
Query: 432 MNTCLPHTKETSDET-----NKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
++ E K++ +W+ ++ WVI +++ + +++W
Sbjct: 352 EEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRN-- 258
GH + V V + L E + + ADD + +W R +++ + N
Sbjct: 225 GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPY 284
Query: 259 --ILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V + P + LAS+ TD
Sbjct: 285 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP---HNETILASSGTDRR 341
Query: 316 IGFW 319
+ W
Sbjct: 342 LNVW 345
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGTA 415
L + S DH + ++ + V +++ + H+ V+ + W H F S + D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 416 LIWYYKCSQWRFIRLDMNTCLP-HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 474
+IW + + NT P H+ + +V ++++ +++ + + +
Sbjct: 253 MIWDTRSN---------NTSKPSHSVDA-----HTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 475 KIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+WD N L + + H +E+F ++ P + +L S+G D + +WD+
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 49/259 (18%), Positives = 103/259 (39%), Gaps = 47/259 (18%)
Query: 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DIDISKTVFHEPVMF 338
L GHQ G+++ P N +L S S D I W + +KT+F
Sbjct: 173 LRGHQKEGYGLSWNP---NLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAV 229
Query: 339 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 398
E + + H+L S + + D + ++ ++ V+ H+ +V+ +
Sbjct: 230 VEDV---SWHLLHESL------FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 399 WS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 457
++ +S +GS D T +W R ++L +++ H E + V W
Sbjct: 281 FNPYSEFILATGSADKTVALW-----DLRNLKLKLHSFESHKDE----------IFQVQW 325
Query: 458 DASDRWVITAINFNFQIKIWD------------AFNG--DLVQVLKGHTNEVFVLESHPF 503
+ ++ + + ++ +WD A +G +L+ + GHT ++ +P
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 504 DSRVLLSAGHDGLIIIWDI 522
+ V+ S D ++ +W +
Sbjct: 386 EPWVICSVSEDNIMQVWQM 404
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 26/194 (13%)
Query: 405 RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464
+S S D T +W +D T T V V+W +
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIF---------TGHTAVVEDVSWHLLHESL 242
Query: 465 ITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
++ + ++ IWD + + + + HT EV L +P+ +L + D + +WD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 522 ILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGL---GGFKRP 577
+ + K + H+ + E +F +WSP + T A + + L V+ L G + P
Sbjct: 303 LRNLKLK----LHSFESHKDE--IFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Query: 578 QNI----PRELFFH 587
++ P LF H
Sbjct: 357 EDAEDGPPELLFIH 370
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 488 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 547
L+GH E + L +P S LLSA D I +WDI + + EG + D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK--------------EGKVVD 218
Query: 548 GKWSPDGTTCALTDSYGHLLVYGLGG 573
K G T + D HLL L G
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFG 244
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 76/200 (38%), Gaps = 35/200 (17%)
Query: 329 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVD-SPLGILEV 387
K+ F E F +R ++P G A+ GD + +Y +GVD + G+ E
Sbjct: 183 KSTFGEHTKFVHSVR----------YNPDGSLFASTGGDGTIVLY--NGVDGTKTGVFED 230
Query: 388 EE-----HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 442
+ HS V + WS + S S D T I W L + +P
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI-------WNVATLKVEKTIPVGTRI 283
Query: 443 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502
D+ + W + + +I+ N I + G + QV GH + L S
Sbjct: 284 EDQQ------LGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 503 FDSRVLLSAGHDGLIIIWDI 522
D + L SA +G I WDI
Sbjct: 335 -DGKTLFSADAEGHINSWDI 353
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 491 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 550
HT V + +P D + S G DG I++++ + + G ++ G++F W
Sbjct: 189 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 551 SPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581
SPDGT A + + ++ + K + IP
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIP 278
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 31/178 (17%)
Query: 250 SDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYL 307
S +A+ N +A G D + ++ L +++ + +V H IT V F N +L
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFS----NNGAFL 506
Query: 308 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN------AHILCSSFSPGGLFL 361
+T D S+ V V N + N A + C S+SP + L
Sbjct: 507 VAT---------------DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 362 ATGSGDHHVRVYKMDG-VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418
ATGS D+ V V+ M+ D P+ I++ V+S+ W + VS +D W
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 607
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 15/117 (12%)
Query: 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-------GCSGEISDIAID 255
H V V ++ G + + D I L+ DG SG + +
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 256 NRNILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQ--GII-TGVNFCPLEVNGF 304
+A+ + DKTI+IWN+ TL P+ + Q GII T + NGF
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 471 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
+F +K+WD +++ H++EV + + P + LS G DG I++WD
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 306
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG--TI 71
Query: 307 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364
LAS S DG + WK + I+ H + + + P L L +A+
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--------LLVASS 123
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 411
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 124 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180
Query: 412 DGTALIWYY 420
D IW Y
Sbjct: 181 DNLVKIWKY 189
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 484 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 542
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 47 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 101
Query: 543 GALFDGKWSP 552
++ +W+P
Sbjct: 102 ASVNSVQWAP 111
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 219 IVTGADDLLIKLWR----ARDGKLLATLRGCSGEISDIAIDNRNIL---LAAGTVDKTIR 271
VTG D L+K+W+ A+ L +TL G S + D+A +L LA+ + D+T
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 272 IW 273
IW
Sbjct: 235 IW 236
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 306
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-- 69
Query: 307 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364
LAS S DG + WK + I+ H + + + P L L +A+
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL--------LLVASS 121
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 411
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 412 DGTALIWYY 420
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 484 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 542
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 99
Query: 543 GALFDGKWSP 552
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 219 IVTGADDLLIKLWR----ARDGKLLATLRGCSGEISDIAIDNRNIL---LAAGTVDKTIR 271
VTG D L+K+W+ A+ L +TL G S + D+A +L LA+ + D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 272 IW 273
IW
Sbjct: 233 IW 234
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH + V ++K G+++ + + D +W + +G+ L TL G +G I I +D
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 262 AAGTVDKTIRIWNL 275
G+ D +I++W++
Sbjct: 90 VTGSADYSIKLWDV 103
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR 243
GH ++ + D + VTG+ D IKLW +G+ +AT +
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK 113
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 306
I D +D LA + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-- 69
Query: 307 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPL-LLVASS 121
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 411
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 412 DGTALIWYY 420
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 484 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 542
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW-----KEENGRWSQIAVHAVHS 99
Query: 543 GALFDGKWSP 552
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 219 IVTGADDLLIKLWR----ARDGKLLATLRGCSGEISDIAIDNRNIL---LAAGTVDKTIR 271
VTG D L+K+W+ A+ L +TL G S + D+A +L LA+ + D+T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 272 IW 273
IW
Sbjct: 233 IW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 306
I D +D +A + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-- 69
Query: 307 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPM-LLVASS 121
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 411
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 412 DGTALIWYY 420
D IW Y
Sbjct: 179 DNLVKIWKY 187
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 484 LVQVLKGHTNEVFVLE-SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 542
L+ L GH V+ ++ +HP +L S +DG ++IW K+ +W V
Sbjct: 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW-----KEENGRWSQIAVHAVHS 99
Query: 543 GALFDGKWSP 552
++ +W+P
Sbjct: 100 ASVNSVQWAP 109
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 361 LATGSGDHHVRVYKMDGVD------SPLGILEVEEHSDKVDSIQWSHSHLR-FVSGSRDG 413
LA+G + + ++ M+ +PL + D+V S+ W+ S F S
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 414 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW---DASDRWVITAINF 470
A IW K + + H TS + K ++++V W +++ T +
Sbjct: 189 FASIWDLKAKK----------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238
Query: 471 NFQIKIWDAFNGD--LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
+ I IWD N + L + +GH + L+ D +LLS+G D +++W+ S++Q
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 277
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 336
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 337 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 397 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 436
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 349
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 410 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 462
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 463 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 202 GHLSAVFCVLFD-KLGEVIVTGADDLLIKLWRARDGKLLATL-----RGCSGEISDIAID 255
GH V CV F+ K +G D +K+W TL RG + + +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-YVDYYPLP 196
Query: 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
++ ++ A D TI+IW+ QT + ++ L GH ++ F P + S S DG
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT----LPIIISGSEDGT 251
Query: 316 IGFW 319
+ W
Sbjct: 252 LKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277
++T +DDL IK+W + +ATL G +S ++ +G+ D T++IWN T
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 219 IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-T 277
I+ G+DD I+++ G+ + I IA+ + +G+ D T+++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI-DISKTVFHEPV 336
A GH+ + V F P + + F AS D + W + + T E
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTF---ASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 337 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396
+ P P ++ T S D ++++ + + +E H V
Sbjct: 187 VNYVDYYP----------LPDKPYMITASDDLTIKIWDY---QTKSCVATLEGHMSNVSF 233
Query: 397 IQWSHSHLRFVSGSRDGTALIW---YYKCSQWRFIRLDMNTCL 436
+ + +SGS DGT IW YK + + L+ + C+
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 56/264 (21%)
Query: 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI 349
+ G++F P E ++ +T G + W Y+ +++ S V PV + I N
Sbjct: 16 VKGIDFHPTE----PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN--- 68
Query: 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409
++ GS D +RV+ + + +++ E H D + SI + +SG
Sbjct: 69 ----------WIIVGSDDFRIRVFNYNTGEK---VVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 410 SRDGTALIWYYKCSQWRFIRL-----DMNTCLPHT-KETSDETNKKIKVTMVAWDASDR- 462
S D T +W ++ + W + C+ K+ S + + T+ W
Sbjct: 116 SDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 463 -------------------------WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497
++ITA + + IKIWD V L+GH + V
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 498 LESHPFDSRVLLSAGHDGLIIIWD 521
HP +++S DG + IW+
Sbjct: 234 AVFHP-TLPIIISGSEDGTLKIWN 256
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 202 GHLSAVFCVLFD-KLGEVIVTGADDLLIKLWRARDGKLLATL-----RGCSGEISDIAID 255
GH V CV F+ K +G D +K+W TL RG + + +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN-YVDYYPLP 196
Query: 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
++ ++ A D TI+IW+ QT + ++ L GH ++ F P + S S DG
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT----LPIIISGSEDGT 251
Query: 316 IGFW 319
+ W
Sbjct: 252 LKIW 255
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 35/231 (15%)
Query: 261 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
L + + D T+ +W++ + + ++ GH ++ V + L + F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF---GSVADD 251
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 372
+ W D +P + + A + C SF+P F LATGS D V +
Sbjct: 252 QKLMIW------DTRSNTTSKP---SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 373 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 431
+ + + L + E H D++ + WS H+ S D + + W ++
Sbjct: 303 WDLRNL--KLKLHTFESHKDEIFQVHWSPHNETILASSGTD-------RRLNVWDLSKIG 353
Query: 432 MNTCLPHTKETSDET-----NKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
++ E K++ +W+ ++ WVI +++ + ++IW
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDG---KLLATLRGCSGEISDIAID-N 256
GH + V V + L E + + ADD + +W R K + + E++ ++ +
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 257 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V++ P + LAS+ TD
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP---HNETILASSGTDRR 343
Query: 316 IGFW 319
+ W
Sbjct: 344 LNVW 347
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 452 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVL 508
V VAW + ++ + ++ IWD + + ++ HT EV L +P+ +L
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 509 LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLL 567
+ D + +WD+ + K + H + E +F WSP + T A + + L
Sbjct: 292 ATGSADKTVALWDLRNLKLK----LHTFESHKDE--IFQVHWSPHNETILASSGTDRRLN 345
Query: 568 VYGLGGFKRPQNI-------PRELFFH 587
V+ L Q+ P LF H
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIH 372
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 488 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 547
L+GH E + L + S LLSA D + +WDI + G EG + D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA--------------GPKEGKIVD 220
Query: 548 GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEV 607
K G + + D HLL L F + + + + T T ++P+ L + EV
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESL--FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 608 TNL 610
L
Sbjct: 279 NCL 281
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 361 LATGSGDHHVRVYKMDGVDSPLGILEVEE----HSDKVDSIQWSHSHLR-FVSGSRDGTA 415
L + S DH V ++ ++ I++ + HS V+ + W H F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 416 LIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475
+IW + + + HT E V ++++ +++ + + +
Sbjct: 255 MIWDTRSNT---TSKPSHLVDAHTAE----------VNCLSFNPYSEFILATGSADKTVA 301
Query: 476 IWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522
+WD N L + + H +E+F + P + +L S+G D + +WD+
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 387 VEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDE 445
V+ H+ +V+ + ++ +S +GS D T +W R ++L ++T H E
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALW-----DLRNLKLKLHTFESHKDEIFQV 325
Query: 446 TNKKIKVTMVAWDASDR----WVITAINFNFQIKIWDAFNG--DLVQVLKGHTNEVFVLE 499
T++A +DR W ++ I + DA +G +L+ + GHT ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAE--DAEDGPPELLFIHGGHTAKISDFS 383
Query: 500 SHPFDSRVLLSAGHDGLIIIWDI 522
+P + V+ S D ++ IW +
Sbjct: 384 WNPNEPWVICSVSEDNIMQIWQM 406
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 30/189 (15%)
Query: 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNY 306
I D D A + DKTI+I+ ++ T I L GH+G + V++ +
Sbjct: 12 IHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI-- 69
Query: 307 LASTSTDGCIGFWKYKLD--IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364
LAS S DG + WK + I+ H + + + P + P L +A+
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-------HEYGPX-LLVASS 121
Query: 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-------------RFVSGSR 411
G V +K +G SP+ I + H+ V+S W+ + + +FV+G
Sbjct: 122 DGKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 412 DGTALIWYY 420
D IW Y
Sbjct: 179 DNLVKIWKY 187
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 35/231 (15%)
Query: 261 LAAGTVDKTIRIWNL-------QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313
L + + D T+ +W++ + + ++ GH ++ V + L + F S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF---GSVADD 251
Query: 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATGSGDHHVRV 372
+ W D +P + A + C SF+P F LATGS D V +
Sbjct: 252 QKLXIW------DTRSNTTSKPSHL---VDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 373 YKMDGVDSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 431
+ + + L + E H D++ + WS H+ S D + + W ++
Sbjct: 303 WDLRNL--KLKLHTFESHKDEIFQVHWSPHNETILASSGTD-------RRLNVWDLSKIG 353
Query: 432 MNTCLPHTKETSDET-----NKKIKVTMVAWDASDRWVITAINFNFQIKIW 477
++ E K++ +W+ ++ WVI +++ + +IW
Sbjct: 354 EEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 36.6 bits (83), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 202 GHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDG---KLLATLRGCSGEISDIAID-N 256
GH + V V + L E + + ADD + +W R K + + E++ ++ +
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY 286
Query: 257 RNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315
+LA G+ DKT+ +W+L+ L + H+ I V++ P + LAS+ TD
Sbjct: 287 SEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP---HNETILASSGTDRR 343
Query: 316 IGFW 319
+ W
Sbjct: 344 LNVW 347
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 452 VTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ---VLKGHTNEVFVLESHPFDSRVL 508
V VAW + ++ + ++ IWD + + ++ HT EV L +P+ +L
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 509 LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLL 567
+ D + +WD+ + K + H + E +F WSP + T A + + L
Sbjct: 292 ATGSADKTVALWDLRNLKLK----LHTFESHKDE--IFQVHWSPHNETILASSGTDRRLN 345
Query: 568 VYGLGGFKRPQNI-------PRELFFH 587
V+ L Q+ P LF H
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIH 372
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 488 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 547
L+GH E + L + S LLSA D + +WDI + G EG + D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINA--------------GPKEGKIVD 220
Query: 548 GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEV 607
K G + + D HLL L F + + + T T ++P+ L + EV
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESL--FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEV 278
Query: 608 TNL 610
L
Sbjct: 279 NCL 281
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLL 509
+V ++++ +++ + + + +WD N L + + H +E+F + P + +L
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 510 SAGHDGLIIIWDI 522
S+G D + +WD+
Sbjct: 337 SSGTDRRLNVWDL 349
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 256 NRNILLAAGTVDKTIRIWNL-QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
N+ ++A G D + IW++ Q P+S+L H+ + V+F P + +L + S DG
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHP---SNPEHLFTCSEDG 303
Query: 315 CIGFWKYKLDIDISKTVFHE 334
+ W D+ ++FH+
Sbjct: 304 SLWHWDASTDVPEKSSLFHQ 323
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 465 ITAINFNFQIKIWD----AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
I +N Q+KIWD + L G + ++ HP V+ + G DG++ IW
Sbjct: 205 ILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
Query: 521 DI 522
D+
Sbjct: 265 DV 266
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 474 IKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 532
+ IWD G + V +LK H E++ + HP + L + DG + WD +
Sbjct: 261 LSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSL 320
Query: 533 FH 534
FH
Sbjct: 321 FH 322
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 21/185 (11%)
Query: 202 GHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRAR-DGKLLATLRGCSGEISDIAIDNRNI 259
GH + V + + L + ++G+ D ++LW R + + T G G+I+ +
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 260 LLAAGTVDKTIRIWNLQTLAPISVLV-------GHQGIITGVNFCPLEVNGFNYLASTST 312
G+ D T R+++++T + V I+T V F ++G A S
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF---SISGRLLFAGYSN 319
Query: 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRV 372
C Y D +++ V + + N I C S G L TGS D ++++
Sbjct: 320 GDC-----YVWDTLLAEMVLNLGTLQNSH----EGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 373 YKMDG 377
+ G
Sbjct: 371 WAFSG 375
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 44/299 (14%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL 261
GH V+ + + IV+ + D + +W A + ++ + + A +
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV 123
Query: 262 AAGTVDKTIRIWNLQTLA------PIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314
A G +D I+NL + A P+S VL GH+G + + P + L + S D
Sbjct: 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET---RLITGSGDQ 180
Query: 315 CIGFWKYKLD--IDISKTVF---HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369
W I I + F H + + I NA++ S GS D
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS-----------GSCDTT 229
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
VR++ + + + H ++S+++ RF +GS DGT +
Sbjct: 230 VRLWDLR--ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL------------ 275
Query: 430 LDMNT---CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 485
DM T + +E N+ VT VA+ S R + + N +WD ++V
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMV 333
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 483 DLV--QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
DLV + L+GH+ +V+ L+ P + ++SA DG +I+W+ L+S++
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQK 100
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 476 IWDAFNGDLVQVL-----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY 530
+WD G + + GHT +V L + ++ + +S D + +WD L R
Sbjct: 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD-LRITSRAV 242
Query: 531 KWFHNIVEGQGEGALFDGKWSPDG 554
+ +H EG + K+ PDG
Sbjct: 243 RTYHG-----HEGDINSVKFFPDG 261
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 408
I C +++ +A +H V +Y+ G + + + E++EH+ +V I W+ R V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 409 GSRDGTALIWYYKCSQWR 426
D A +W K W+
Sbjct: 70 CGTDRNAYVWTLKGRTWK 87
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 100/251 (39%), Gaps = 24/251 (9%)
Query: 280 PISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 338
P+ GH ++T V F P++ G YL S G + W + D + + + F
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 112
Query: 339 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 398
++ G + F G G G + V+ + LG EV HS ++++
Sbjct: 113 --QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACH 167
Query: 399 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 457
S +R ++ DG+ + +Y+ ++F D H K+ S V V +
Sbjct: 168 LKQSRPMRSMTVGDDGSVV--FYQGPPFKFSASDRT----HHKQGS-------FVRDVEF 214
Query: 458 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV--FVLESHPFDSRVLLSAGHDG 515
+ + + +I +D +G+ ++ ++ V + DS+ + G D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 516 LIIIWDILSSK 526
I +WD+ +SK
Sbjct: 275 TIRVWDVTTSK 285
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVS 408
I C +++ +A +H V +Y+ G + + + E++EH+ +V + W+ R V+
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 409 GSRDGTALIWYYKCSQWR 426
D A +W K W+
Sbjct: 70 CGTDRNAYVWTLKGRTWK 87
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 471 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521
+ IK+WD ++ + H +V + + P V LS D I++WD
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 242 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEV 301
L G G IS + ++ N LL + + D T+RIW+ + GH I ++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV---- 298
Query: 302 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 361
G + + S S DG + W K + ++ ++ +F RI S G
Sbjct: 299 -GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI------------SQDGQKY 345
Query: 362 ATGSGDHHVRVYKMDGVDS 380
A D V VY + ++S
Sbjct: 346 AVAFMDGQVNVYDLKKLNS 364
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL 260
+GH + + F+ +++++ +DD +++W +G G S I + + +
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 261 LAAGTVDKTIRIWNLQ--TLAPISVLVG 286
++ ++D ++R+W+L+ TL +S++ G
Sbjct: 304 ISC-SMDGSVRLWSLKQNTLLALSIVDG 330
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 491 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY 530
H + L+ P + R +LS G DG+I+++D+ +S ++ Y
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 114/280 (40%), Gaps = 51/280 (18%)
Query: 260 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC---I 316
+ + + DKT+++W+ TL V + + + ++++ ST C +
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS------------HHMSPVSTKHCLVAV 161
Query: 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKM 375
G K+ + K+ ++ R IL S+SP LAT S D V+++ +
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHR-----QEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 376 DGVDSPLGILE---------VEE----HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 422
L L+ VE H+ KV+ + ++ L ++ D +W
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Query: 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 482
+ NT + + K + + K +K T V+ S +V + + I ++ ++G
Sbjct: 277 GE--------NTLVNYGK-VCNNSKKGLKFT-VSCGCSSEFVF--VPYGSTIAVYTVYSG 324
Query: 483 DLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
+ + +LKGH T + V +S + + L S D I+ W
Sbjct: 325 EQITMLKGHYKTVDCCVFQS---NFQELYSGSRDCNILAW 361
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 31/196 (15%)
Query: 340 ERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVD----------SPLGILEVE 388
ERI G + L P G ++ +G D + +Y ++ +G +
Sbjct: 39 ERIHGGGINTL--DIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD 96
Query: 389 EHSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 447
H V+++QW H F S S D T +W D NT +ET
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVW------------DTNTLQTADVFNFEETV 144
Query: 448 KKIKVTMVAWDASDRWVITAINFNF-QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 506
++ V S + + A+ ++++ D +G +L+GH E+ + P
Sbjct: 145 YSHHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 507 VLLSAGHDGLIIIWDI 522
+L +A D + +WD+
Sbjct: 201 ILATASADSRVKLWDV 216
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY-LASTST 312
+ ++ L+A GT +++ +L++ + +L GH+ I V++ P ++Y LA+ S
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPR----YDYILATASA 207
Query: 313 DGCIGFWKYK------LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 366
D + W + + +D + V G + LC F+ GL L T
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC--FTSDGLHLLTVGT 265
Query: 367 DHHVRVYKMDGVDSPL 382
D+ +R++ ++ L
Sbjct: 266 DNRMRLWNSSNGENTL 281
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252
N+ + + + ++ FC L +V D++ + DGK L LR +++ +
Sbjct: 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256
Query: 253 AID-NRNILLAAGTVDKTIRIWNLQTL 278
A++ + LA +VD+T++IW+L+ +
Sbjct: 257 ALNPCCDWFLATASVDQTVKIWDLRQV 283
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252
N+ + + + ++ FC L +V D++ + DGK L LR +++ +
Sbjct: 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256
Query: 253 AID-NRNILLAAGTVDKTIRIWNLQTL 278
A++ + LA +VD+T++IW+L+ +
Sbjct: 257 ALNPCCDWFLATASVDQTVKIWDLRQV 283
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252
N+ + + + ++ FC L +V D++ + DGK L LR +++ +
Sbjct: 198 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 257
Query: 253 AID-NRNILLAAGTVDKTIRIWNLQTL 278
A++ + LA +VD+T++IW+L+ +
Sbjct: 258 ALNPCCDWFLATASVDQTVKIWDLRQV 284
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 98/251 (39%), Gaps = 24/251 (9%)
Query: 280 PISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 338
P+ GH ++T V F P++ G YL S G + W + D + + + F
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF 112
Query: 339 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 398
++ G + F G G G + V+ + LG EV HS ++++
Sbjct: 113 --QVLAGPISDISWDFE-GRRLCVVGEGRDNFGVFISWDSGNSLG--EVSGHSQRINACH 167
Query: 399 WSHSH-LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 457
S R + DG+ + +Y+ ++F D H K+ S V V +
Sbjct: 168 LKQSRPXRSXTVGDDGSVV--FYQGPPFKFSASDRT----HHKQGS-------FVRDVEF 214
Query: 458 DASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV--FVLESHPFDSRVLLSAGHDG 515
+ + + +I +D +G+ ++ ++ V + DS+ + G D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA 274
Query: 516 LIIIWDILSSK 526
I +WD+ +SK
Sbjct: 275 TIRVWDVTTSK 285
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 474 IKIWDAFNGD--LVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIW 520
+KI+D NG L+ L+GH V+ V +HP +L S +D +IIW
Sbjct: 37 VKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|2EJX|A Chain A, Crystal Structure Of The Hypothetical Protein St0812 From
Sulfolobus Tokodaii
Length = 139
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 320 KYKLDIDISKTVFHEPVMFNERIRPGNAHILC---SSFSPGGLFLATGSGDHHVRVYKMD 376
K DID+ T+F +P +I PG A I C F G FLA S RVYK
Sbjct: 12 KTNQDIDVVMTIFSDPAFTIPQIFPGIASIKCIEPEIFEAEGKFLAF-SYKVKGRVYK-- 68
Query: 377 GVD 379
GVD
Sbjct: 69 GVD 71
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 66/355 (18%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKL---------------WRARDGKLLATLRGCS 246
GH V V++D G + T + D IK+ WRA D ++A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI----- 63
Query: 247 GEISDIAIDNRNILLAAGTVDKTIRIW---------NLQTLAPISVLVGHQGIITGVNFC 297
D A ++A+ + DKT+++W + + + L +G + V F
Sbjct: 64 ----DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI---LCSS 353
P + G LA DG + + D+ S T+ E + + I P N H+ C S
Sbjct: 120 PAHL-GLK-LACLGNDGILRLYDALEPSDLRSWTLTSEXKVLS--IPPAN-HLQSDFCLS 174
Query: 354 FSPGGLF---LATGSGDHHVRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRF--- 406
+ P LA + + + +Y+ G D L + ++ H + SI W+ S R+
Sbjct: 175 WCPSRFSPEKLAVSALEQAI-IYQR-GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 407 -VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 465
+G +DG R ++ ++E+ +N V DA R
Sbjct: 233 IATGCKDGRI----------RIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGR--- 279
Query: 466 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
+ N + ++ +L+ H EV+ + S +L SAG DG + +W
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV-SWNLTGTILSSAGDDGKVRLW 333
>pdb|1L7Q|A Chain A, Ser117ala Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With Transition State
Analog
pdb|1JU4|A Chain A, Bacterial Cocaine Esterase Complex With Product
Length = 583
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3I2F|A Chain A, Cocaine Esterase With Mutations T172r G173Q, BOUND TO DTT
ADDUCT
Length = 587
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3IDA|A Chain A, Thermostable Cocaine Esterase With Mutations L169k And
G173q, Bound To Dtt Adduct
Length = 587
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3I2H|A Chain A, Cocaine Esterase With Mutation L169k, Bound To Dtt Adduct
Length = 587
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3I2J|A Chain A, Cocaine Esterase, Wild Type, Without A Ligand
pdb|3I2K|A Chain A, Cocaine Esterase, Wild Type, Bound To A Dtt Adduct
pdb|3PUH|A Chain A, Cocaine Esterase, Wild-Type Biologically Active Dimer
pdb|3PUH|B Chain B, Cocaine Esterase, Wild-Type Biologically Active Dimer
Length = 587
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3I2I|A Chain A, Cocaine Esterase With Mutation T172r, Bound To Dtt Adduct
Length = 587
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3I2G|A Chain A, Cocaine Esterase With Mutation G173q, Bound To Dtt Adduct
Length = 587
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 66/355 (18%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKL---------------WRARDGKLLATLRGCS 246
GH V V++D G + T + D IK+ WRA D ++A
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI----- 63
Query: 247 GEISDIAIDNRNILLAAGTVDKTIRIW---------NLQTLAPISVLVGHQGIITGVNFC 297
D A ++A+ + DKT+++W + + + L +G + V F
Sbjct: 64 ----DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 119
Query: 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI---LCSS 353
P + G LA DG + + D+ S T+ E + + I P N H+ C S
Sbjct: 120 PAHL-GLK-LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS--IPPAN-HLQSDFCLS 174
Query: 354 FSPGGLF---LATGSGDHHVRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRF--- 406
+ P LA + + + +Y+ G D L + ++ H + SI W+ S R+
Sbjct: 175 WCPSRFSPEKLAVSALEQAI-IYQR-GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232
Query: 407 -VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 465
+G +DG R ++ ++E+ +N V DA R
Sbjct: 233 IATGCKDGRI----------RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR--- 279
Query: 466 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
+ N + ++ +L+ H EV+ + S +L SAG DG + +W
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV-SWNLTGTILSSAGDDGKVRLW 333
>pdb|1L7R|A Chain A, Tyr44phe Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPFDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|3PUI|A Chain A, Cocaine Esterase With Mutations G4c, S10c
Length = 587
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429
V +Y+ D D P+ +L V DK D WS ++ RDG A++ R +
Sbjct: 24 VDLYRPDA-DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVV----IQDTRGLF 78
Query: 430 LDMNTCLPHTKETSDETNKKIKVTMVAW 457
+PH + +D + + AW
Sbjct: 79 ASEGEFVPHVDDEADAEDTLSWILEQAW 106
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ 527
I +WD N LV+ +GHT+ ++ D L + G D + WD+ +Q
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQ 217
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 66/355 (18%)
Query: 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKL---------------WRARDGKLLATLRGCS 246
GH V V++D G + T + D IK+ WRA D ++A
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI----- 61
Query: 247 GEISDIAIDNRNILLAAGTVDKTIRIW---------NLQTLAPISVLVGHQGIITGVNFC 297
D A ++A+ + DKT+++W + + + L +G + V F
Sbjct: 62 ----DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA 117
Query: 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDI-SKTVFHEPVMFNERIRPGNAHI---LCSS 353
P + G LA DG + + D+ S T+ E + + I P N H+ C S
Sbjct: 118 PAHL-GLK-LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS--IPPAN-HLQSDFCLS 172
Query: 354 FSPGGLF---LATGSGDHHVRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRF--- 406
+ P LA + + + +Y+ G D L + ++ H + SI W+ S R+
Sbjct: 173 WCPSRFSPEKLAVSALEQAI-IYQR-GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 230
Query: 407 -VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 465
+G +DG R ++ ++E+ +N V DA R
Sbjct: 231 IATGCKDGRI----------RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR--- 277
Query: 466 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520
+ N + ++ +L+ H EV+ + S +L SAG DG + +W
Sbjct: 278 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV-SWNLTGTILSSAGDDGKVRLW 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,711,000
Number of Sequences: 62578
Number of extensions: 1631606
Number of successful extensions: 4368
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3386
Number of HSP's gapped (non-prelim): 473
length of query: 1407
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1296
effective length of database: 8,027,179
effective search space: 10403223984
effective search space used: 10403223984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)