Query psy6522
Match_columns 1407
No_of_seqs 1303 out of 4708
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:14:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 5.6E-43 1.9E-47 444.4 51.6 436 182-650 39-608 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 2.4E-41 8.3E-46 422.5 52.9 405 195-640 7-446 (577)
3 1nr0_A Actin interacting prote 100.0 4.8E-41 1.6E-45 426.6 51.7 414 174-606 73-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 5.1E-40 1.8E-44 410.5 55.1 377 174-605 194-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 6.3E-40 2.1E-44 447.9 53.8 451 147-639 609-1237(1249)
6 1vyh_C Platelet-activating fac 100.0 1.5E-40 5.3E-45 401.1 40.2 288 198-522 102-409 (410)
7 1got_B GT-beta; complex (GTP-b 100.0 2.1E-38 7.3E-43 372.0 45.8 292 194-521 45-340 (340)
8 3sfz_A APAF-1, apoptotic pepti 100.0 7.8E-38 2.7E-42 427.2 52.9 419 196-640 607-1147(1249)
9 3ow8_A WD repeat-containing pr 100.0 4.8E-38 1.7E-42 367.0 43.2 289 197-522 25-319 (321)
10 1r5m_A SIR4-interacting protei 100.0 8E-38 2.7E-42 371.8 40.5 341 198-572 39-424 (425)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.6E-38 2.2E-42 368.9 39.1 317 193-525 4-336 (345)
12 2ynn_A Coatomer subunit beta'; 100.0 2.3E-37 7.9E-42 357.4 42.8 296 194-524 3-302 (304)
13 3iz6_a 40S ribosomal protein R 100.0 3.2E-38 1.1E-42 376.5 36.2 310 193-525 55-376 (380)
14 1pgu_A Actin interacting prote 100.0 7E-37 2.4E-41 383.4 49.3 431 181-651 38-612 (615)
15 2pbi_B Guanine nucleotide-bind 100.0 3.1E-37 1.1E-41 364.9 43.5 292 195-521 55-354 (354)
16 1vyh_C Platelet-activating fac 100.0 3.6E-37 1.2E-41 371.7 43.0 289 239-571 101-409 (410)
17 3frx_A Guanine nucleotide-bind 100.0 1.2E-36 4.1E-41 354.2 43.7 293 193-525 6-318 (319)
18 3mkq_A Coatomer beta'-subunit; 100.0 4.2E-36 1.4E-40 390.9 51.5 398 194-639 3-448 (814)
19 2oaj_A Protein SNI1; WD40 repe 100.0 7E-37 2.4E-41 405.2 44.5 434 200-651 13-659 (902)
20 2xzm_R RACK1; ribosome, transl 100.0 2.3E-36 7.8E-41 354.9 41.8 296 193-525 10-341 (343)
21 3ow8_A WD repeat-containing pr 100.0 1.7E-36 6E-41 353.8 40.4 291 238-572 24-320 (321)
22 1got_B GT-beta; complex (GTP-b 100.0 5E-36 1.7E-40 351.9 43.7 294 236-570 45-340 (340)
23 4ery_A WD repeat-containing pr 100.0 1.1E-35 3.8E-40 342.6 45.3 298 192-523 11-311 (312)
24 1pgu_A Actin interacting prote 100.0 2.4E-35 8.1E-40 369.5 51.3 405 174-608 80-614 (615)
25 2pm9_A Protein WEB1, protein t 100.0 6.8E-38 2.3E-42 373.4 26.8 344 204-574 12-415 (416)
26 1gxr_A ESG1, transducin-like e 100.0 2.4E-36 8.2E-41 348.0 38.5 323 203-571 8-335 (337)
27 2ynn_A Coatomer subunit beta'; 100.0 7.2E-36 2.5E-40 344.9 41.8 294 237-573 4-302 (304)
28 4aow_A Guanine nucleotide-bind 100.0 2.3E-35 7.9E-40 341.2 45.5 298 190-525 24-338 (340)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-36 2.6E-40 351.3 41.6 316 236-581 5-343 (345)
30 3iz6_a 40S ribosomal protein R 100.0 1E-36 3.5E-41 363.5 34.0 318 227-576 47-378 (380)
31 4g56_B MGC81050 protein; prote 100.0 2.3E-36 7.9E-41 358.1 36.5 324 209-576 10-346 (357)
32 2hes_X YDR267CP; beta-propelle 100.0 1.1E-35 3.7E-40 347.8 40.9 308 193-524 3-328 (330)
33 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-35 1.9E-39 380.2 51.2 409 174-639 27-487 (814)
34 3zwl_B Eukaryotic translation 100.0 7.9E-35 2.7E-39 339.2 46.6 304 195-525 23-347 (369)
35 1erj_A Transcriptional repress 100.0 1.1E-35 3.9E-40 356.1 40.0 299 201-525 61-390 (393)
36 2pbi_B Guanine nucleotide-bind 100.0 6.4E-35 2.2E-39 345.1 43.9 296 237-570 55-354 (354)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.5E-35 2.9E-39 353.0 46.0 327 195-574 109-443 (445)
38 2oaj_A Protein SNI1; WD40 repe 100.0 9.8E-36 3.3E-40 394.2 40.6 445 174-638 71-770 (902)
39 4ery_A WD repeat-containing pr 100.0 3.1E-34 1.1E-38 330.6 43.5 295 236-572 13-311 (312)
40 4g56_B MGC81050 protein; prote 100.0 1.6E-35 5.4E-40 350.9 33.5 290 200-525 38-344 (357)
41 4gqb_B Methylosome protein 50; 100.0 4E-35 1.4E-39 346.4 36.1 305 228-577 16-335 (344)
42 3frx_A Guanine nucleotide-bind 100.0 2.3E-34 7.9E-39 334.9 41.7 296 237-574 8-318 (319)
43 3vl1_A 26S proteasome regulato 100.0 4E-35 1.4E-39 350.9 35.3 331 205-573 57-419 (420)
44 4gqb_B Methylosome protein 50; 100.0 4.4E-35 1.5E-39 346.1 34.9 287 202-525 28-332 (344)
45 2hes_X YDR267CP; beta-propelle 100.0 2.9E-34 1E-38 335.6 39.9 309 234-573 2-328 (330)
46 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 368.4 44.2 294 194-523 372-692 (694)
47 3v7d_B Cell division control p 100.0 1.8E-33 6E-38 342.4 47.1 337 195-570 112-460 (464)
48 1sq9_A Antiviral protein SKI8; 100.0 4.4E-34 1.5E-38 338.7 40.6 312 194-525 6-396 (397)
49 4aow_A Guanine nucleotide-bind 100.0 9.2E-34 3.1E-38 327.8 40.8 302 234-575 26-339 (340)
50 2xzm_R RACK1; ribosome, transl 100.0 8.9E-34 3.1E-38 332.8 37.5 301 237-575 12-342 (343)
51 3ei3_B DNA damage-binding prot 100.0 1.9E-33 6.5E-38 333.2 40.6 309 193-524 62-382 (383)
52 1erj_A Transcriptional repress 100.0 9.7E-33 3.3E-37 330.7 44.1 292 244-574 62-390 (393)
53 4a11_B DNA excision repair pro 100.0 4.8E-33 1.7E-37 329.2 40.9 340 197-573 36-405 (408)
54 1k8k_C P40, ARP2/3 complex 41 100.0 1.9E-33 6.6E-38 329.3 37.0 296 200-525 4-362 (372)
55 3odt_A Protein DOA1; ubiquitin 100.0 8E-33 2.7E-37 315.6 41.0 288 191-525 5-297 (313)
56 3i2n_A WD repeat-containing pr 100.0 1.3E-33 4.6E-38 328.2 34.7 303 196-576 10-356 (357)
57 3zwl_B Eukaryotic translation 100.0 2.1E-32 7.3E-37 318.6 43.9 298 238-578 24-351 (369)
58 1gxr_A ESG1, transducin-like e 100.0 1.7E-32 5.8E-37 315.7 42.1 285 197-522 44-335 (337)
59 1r5m_A SIR4-interacting protei 100.0 7.2E-33 2.5E-37 329.1 40.0 281 203-523 107-424 (425)
60 2pm9_A Protein WEB1, protein t 100.0 6.2E-34 2.1E-38 339.2 29.8 332 247-609 13-415 (416)
61 4e54_B DNA damage-binding prot 100.0 5.7E-34 2E-38 345.8 29.3 313 194-525 109-431 (435)
62 3ei3_B DNA damage-binding prot 100.0 1.2E-32 4E-37 326.5 36.8 303 230-573 57-382 (383)
63 3k26_A Polycomb protein EED; W 100.0 3.5E-33 1.2E-37 325.4 31.4 307 198-523 12-365 (366)
64 3odt_A Protein DOA1; ubiquitin 100.0 4.9E-32 1.7E-36 309.0 40.0 295 236-580 8-303 (313)
65 3dwl_C Actin-related protein 2 100.0 5.3E-34 1.8E-38 336.5 24.0 296 199-522 6-377 (377)
66 3f3f_A Nucleoporin SEH1; struc 100.0 1.6E-32 5.6E-37 315.1 35.2 315 198-534 5-345 (351)
67 1sq9_A Antiviral protein SKI8; 100.0 5.1E-32 1.8E-36 321.0 40.4 311 238-575 8-397 (397)
68 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-32 8E-37 320.1 36.5 318 242-576 4-364 (372)
69 4gga_A P55CDC, cell division c 100.0 4.8E-32 1.6E-36 327.1 39.4 283 206-525 107-396 (420)
70 3gre_A Serine/threonine-protei 100.0 1.2E-32 4.1E-37 332.3 33.7 307 194-570 52-437 (437)
71 4ggc_A P55CDC, cell division c 100.0 1.9E-31 6.5E-36 305.4 40.4 282 207-525 28-316 (318)
72 4aez_A CDC20, WD repeat-contai 100.0 1.3E-31 4.3E-36 321.1 38.1 289 199-525 86-381 (401)
73 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-33 1.6E-37 346.9 26.6 309 218-574 175-518 (524)
74 3k26_A Polycomb protein EED; W 100.0 5.5E-32 1.9E-36 315.2 33.8 312 241-573 13-366 (366)
75 4a11_B DNA excision repair pro 100.0 2.3E-32 7.8E-37 323.4 31.0 330 225-581 22-373 (408)
76 4e54_B DNA damage-binding prot 100.0 1.8E-32 6.3E-37 332.5 30.4 302 237-577 110-434 (435)
77 3dm0_A Maltose-binding peripla 100.0 1.2E-31 4.1E-36 345.0 38.6 298 238-573 374-693 (694)
78 1yfq_A Cell cycle arrest prote 100.0 3.3E-31 1.1E-35 307.0 37.2 304 196-522 3-322 (342)
79 3vl1_A 26S proteasome regulato 100.0 3.4E-31 1.2E-35 316.8 37.6 325 173-524 69-419 (420)
80 2pm7_B Protein transport prote 100.0 3.3E-31 1.1E-35 304.9 35.1 258 197-480 2-284 (297)
81 3v7d_B Cell division control p 100.0 2.3E-30 7.8E-35 314.9 43.2 292 238-579 113-427 (464)
82 3dwl_C Actin-related protein 2 100.0 2.5E-32 8.4E-37 322.2 23.8 314 241-571 6-377 (377)
83 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-31 1.8E-35 319.3 36.0 279 199-525 128-415 (435)
84 3jrp_A Fusion protein of prote 100.0 6.7E-31 2.3E-35 307.6 34.7 265 196-484 3-290 (379)
85 3bg1_A Protein SEC13 homolog; 100.0 1.4E-31 4.8E-36 311.0 28.6 259 198-480 7-292 (316)
86 3dw8_B Serine/threonine-protei 100.0 4E-31 1.4E-35 318.5 31.9 339 202-571 26-444 (447)
87 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-29 5.2E-34 306.8 45.7 306 172-525 129-443 (445)
88 3mmy_A MRNA export factor; mRN 100.0 1.1E-30 3.8E-35 304.0 34.1 309 190-525 25-347 (368)
89 2j04_B YDR362CP, TAU91; beta p 100.0 4.6E-31 1.6E-35 328.9 30.3 317 175-525 176-518 (524)
90 4h5i_A Guanine nucleotide-exch 100.0 4.7E-31 1.6E-35 313.6 28.5 287 204-525 14-344 (365)
91 4h5i_A Guanine nucleotide-exch 100.0 1.1E-29 3.9E-34 301.7 39.3 294 245-574 13-344 (365)
92 4aez_A CDC20, WD repeat-contai 100.0 8.2E-30 2.8E-34 305.4 37.5 294 242-580 87-387 (401)
93 3jrp_A Fusion protein of prote 100.0 5.1E-30 1.7E-34 300.1 32.1 263 236-525 1-288 (379)
94 2pm7_B Protein transport prote 100.0 2.1E-29 7E-34 289.9 35.8 259 239-524 2-285 (297)
95 4gga_A P55CDC, cell division c 100.0 8.6E-29 2.9E-33 298.7 41.7 289 248-579 107-401 (420)
96 1yfq_A Cell cycle arrest prote 100.0 1.3E-29 4.6E-34 293.5 33.1 286 240-570 5-321 (342)
97 4ggc_A P55CDC, cell division c 100.0 1.4E-28 4.8E-33 281.5 38.7 284 249-575 28-317 (318)
98 3mmy_A MRNA export factor; mRN 100.0 3E-29 1E-33 291.8 32.5 297 230-572 23-345 (368)
99 3bg1_A Protein SEC13 homolog; 100.0 8.9E-30 3.1E-34 295.8 27.8 256 241-524 8-293 (316)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-28 3.6E-33 283.3 34.9 312 240-579 5-343 (351)
101 1p22_A F-BOX/WD-repeat protein 100.0 7.8E-29 2.7E-33 300.2 35.3 284 243-579 130-420 (435)
102 3gre_A Serine/threonine-protei 100.0 3E-29 1E-33 302.6 28.1 299 212-582 35-368 (437)
103 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-30 6.3E-35 318.8 16.6 318 202-595 13-347 (588)
104 3jro_A Fusion protein of prote 100.0 2.2E-29 7.4E-34 327.6 27.3 263 197-483 2-287 (753)
105 1l0q_A Surface layer protein; 100.0 3.3E-27 1.1E-31 279.7 43.7 334 217-594 3-363 (391)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-29 1.4E-33 299.0 27.0 286 207-525 37-343 (402)
107 3i2n_A WD repeat-containing pr 100.0 5.7E-28 2E-32 280.7 33.4 285 181-484 43-356 (357)
108 3dw8_B Serine/threonine-protei 100.0 1.1E-27 3.9E-32 288.3 37.1 328 245-606 27-444 (447)
109 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-29 1.7E-33 306.2 24.4 329 243-644 12-354 (588)
110 3bws_A Protein LP49; two-domai 100.0 8.1E-27 2.8E-31 280.3 41.9 323 203-573 59-432 (433)
111 2xyi_A Probable histone-bindin 100.0 1.3E-27 4.6E-32 289.5 32.9 261 240-525 122-411 (430)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-27 9.7E-32 288.0 35.9 300 205-524 5-391 (450)
113 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-27 1.3E-31 278.6 33.0 315 230-576 3-339 (355)
114 3bws_A Protein LP49; two-domai 100.0 2.5E-26 8.7E-31 276.0 36.5 292 192-524 111-432 (433)
115 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-26 7.1E-31 272.3 35.2 286 196-525 11-337 (355)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-26 1.2E-30 278.4 37.6 289 247-573 5-391 (450)
117 2aq5_A Coronin-1A; WD40 repeat 100.0 5.3E-27 1.8E-31 280.6 29.3 275 177-484 52-345 (402)
118 1l0q_A Surface layer protein; 100.0 5.5E-25 1.9E-29 260.7 43.8 329 176-560 6-365 (391)
119 3jro_A Fusion protein of prote 100.0 1.4E-27 4.7E-32 310.6 22.4 260 239-525 2-286 (753)
120 2xyi_A Probable histone-bindin 99.9 5.7E-26 1.9E-30 275.2 31.0 267 198-481 122-410 (430)
121 1nir_A Nitrite reductase; hemo 99.9 4.3E-25 1.5E-29 276.6 39.5 357 211-593 144-534 (543)
122 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-26 1.2E-30 267.9 25.0 274 211-524 43-333 (343)
123 4gq1_A NUP37; propeller, trans 99.9 3.1E-25 1E-29 265.9 30.3 262 287-571 88-387 (393)
124 1k32_A Tricorn protease; prote 99.9 2.4E-24 8.2E-29 290.0 41.1 357 197-606 45-500 (1045)
125 3lrv_A PRE-mRNA-splicing facto 99.9 2E-25 6.7E-30 261.6 25.7 278 253-573 43-333 (343)
126 4gq1_A NUP37; propeller, trans 99.9 7.8E-26 2.7E-30 271.1 22.7 277 200-523 85-388 (393)
127 2w18_A PALB2, fancn, partner a 99.9 1.5E-23 5E-28 243.8 38.8 301 192-571 23-355 (356)
128 1k32_A Tricorn protease; prote 99.9 2.2E-23 7.5E-28 280.6 35.9 397 197-640 92-627 (1045)
129 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-23 4.7E-28 271.0 32.0 341 204-574 36-460 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.4E-23 1.2E-27 250.5 29.4 301 204-554 62-409 (415)
131 1nir_A Nitrite reductase; hemo 99.9 1.4E-22 4.7E-27 253.9 34.4 334 253-635 144-534 (543)
132 2w18_A PALB2, fancn, partner a 99.9 2.6E-22 8.9E-27 233.3 29.8 266 184-522 66-355 (356)
133 1xfd_A DIP, dipeptidyl aminope 99.9 2.9E-22 1E-26 257.7 28.4 327 206-562 18-429 (723)
134 2z3z_A Dipeptidyl aminopeptida 99.9 9E-22 3.1E-26 252.8 30.6 333 207-575 28-437 (706)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-21 7.2E-26 234.8 31.7 278 183-502 94-407 (415)
136 1ri6_A Putative isomerase YBHE 99.9 7E-21 2.4E-25 219.6 34.4 306 218-555 7-335 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 6E-21 2E-25 246.4 34.3 306 246-595 36-441 (741)
138 3u4y_A Uncharacterized protein 99.9 1.4E-20 4.6E-25 217.6 32.9 280 210-525 3-305 (331)
139 2ojh_A Uncharacterized protein 99.9 1.6E-20 5.3E-25 210.7 27.7 258 221-515 17-293 (297)
140 3vgz_A Uncharacterized protein 99.9 5.5E-19 1.9E-23 205.2 37.5 285 204-564 40-335 (353)
141 3u4y_A Uncharacterized protein 99.9 3.6E-19 1.2E-23 205.6 33.4 290 252-576 3-307 (331)
142 1pby_B Quinohemoprotein amine 99.8 3E-19 1E-23 205.3 31.7 294 217-581 2-318 (337)
143 1xfd_A DIP, dipeptidyl aminope 99.8 5.5E-20 1.9E-24 236.5 28.2 314 247-595 17-426 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.8 2.8E-19 9.6E-24 229.6 34.6 283 205-525 82-436 (706)
145 1ri6_A Putative isomerase YBHE 99.8 4.1E-19 1.4E-23 204.7 32.4 281 260-575 7-312 (343)
146 2ojh_A Uncharacterized protein 99.8 7.6E-20 2.6E-24 205.0 24.7 259 263-564 17-293 (297)
147 3hfq_A Uncharacterized protein 99.8 2.3E-18 7.7E-23 201.0 37.6 294 218-525 4-320 (347)
148 1z68_A Fibroblast activation p 99.8 2.2E-19 7.5E-24 231.2 24.5 343 209-577 20-447 (719)
149 3scy_A Hypothetical bacterial 99.8 6E-17 2.1E-21 190.2 40.1 313 214-551 11-360 (361)
150 1jmx_B Amine dehydrogenase; ox 99.8 8.1E-18 2.8E-22 194.7 30.4 284 209-534 4-333 (349)
151 3o4h_A Acylamino-acid-releasin 99.8 1.7E-18 5.7E-23 217.7 26.0 277 204-523 21-314 (582)
152 3o4h_A Acylamino-acid-releasin 99.8 2.5E-18 8.4E-23 216.1 26.9 269 246-573 21-315 (582)
153 3hfq_A Uncharacterized protein 99.8 2E-17 6.9E-22 193.0 31.8 260 200-486 35-324 (347)
154 1jmx_B Amine dehydrogenase; ox 99.8 1.5E-17 5.2E-22 192.4 29.6 307 251-581 4-333 (349)
155 1pby_B Quinohemoprotein amine 99.8 1.2E-17 4.2E-22 191.9 28.2 272 177-492 6-321 (337)
156 3vgz_A Uncharacterized protein 99.8 9.1E-17 3.1E-21 186.4 32.3 260 288-594 40-329 (353)
157 4a5s_A Dipeptidyl peptidase 4 99.8 3.2E-17 1.1E-21 212.6 31.0 343 206-578 18-454 (740)
158 1z68_A Fibroblast activation p 99.8 1E-17 3.6E-22 215.6 23.8 323 250-611 19-446 (719)
159 3scy_A Hypothetical bacterial 99.8 3.2E-16 1.1E-20 184.0 34.2 280 193-501 40-360 (361)
160 3pe7_A Oligogalacturonate lyas 99.8 6.1E-17 2.1E-21 191.2 27.5 307 229-571 13-380 (388)
161 3pe7_A Oligogalacturonate lyas 99.8 3.1E-17 1E-21 193.8 22.8 295 195-523 21-381 (388)
162 2oit_A Nucleoporin 214KDA; NH2 99.7 2E-16 7E-21 192.4 29.2 250 204-480 36-332 (434)
163 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.3E-15 7.8E-20 178.0 36.4 290 218-525 4-342 (365)
164 3c5m_A Oligogalacturonate lyas 99.7 3.4E-16 1.1E-20 184.7 28.8 309 207-576 38-387 (396)
165 2oit_A Nucleoporin 214KDA; NH2 99.7 2.2E-16 7.6E-21 192.1 27.0 274 268-572 23-332 (434)
166 2oiz_A Aromatic amine dehydrog 99.7 2.4E-15 8.2E-20 178.4 32.5 306 215-555 14-360 (361)
167 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-15 6.2E-20 196.1 29.3 321 247-609 17-450 (740)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.2E-14 4.2E-19 171.7 31.5 282 260-574 4-342 (365)
169 3azo_A Aminopeptidase; POP fam 99.7 3.9E-15 1.3E-19 189.6 26.2 298 199-525 18-370 (662)
170 1qks_A Cytochrome CD1 nitrite 99.7 2.5E-13 8.5E-18 170.4 40.8 356 213-591 164-556 (567)
171 3c5m_A Oligogalacturonate lyas 99.6 2.4E-15 8.1E-20 177.4 19.1 297 229-595 13-367 (396)
172 2oiz_A Aromatic amine dehydrog 99.6 1.7E-13 5.9E-18 162.4 29.7 278 194-506 41-360 (361)
173 3azo_A Aminopeptidase; POP fam 99.6 8.5E-14 2.9E-18 177.2 27.5 296 241-576 18-372 (662)
174 2dg1_A DRP35, lactonase; beta 99.6 2.9E-13 9.8E-18 156.8 28.6 276 247-564 6-301 (333)
175 2dg1_A DRP35, lactonase; beta 99.6 2.7E-13 9.2E-18 157.0 28.3 286 205-523 6-315 (333)
176 2gop_A Trilobed protease; beta 99.6 5.6E-13 1.9E-17 154.9 29.7 258 205-523 15-330 (347)
177 1q7f_A NHL, brain tumor CG1071 99.6 9.2E-13 3.2E-17 149.2 29.7 244 201-482 26-281 (286)
178 1q7f_A NHL, brain tumor CG1071 99.6 1.9E-12 6.4E-17 146.7 31.3 242 244-525 27-281 (286)
179 2z2n_A Virginiamycin B lyase; 99.5 1.6E-11 5.5E-16 138.6 38.2 283 200-525 10-296 (299)
180 2gop_A Trilobed protease; beta 99.5 1.7E-12 5.9E-17 150.7 30.7 259 247-572 15-330 (347)
181 1qks_A Cytochrome CD1 nitrite 99.5 7.2E-12 2.5E-16 157.2 37.9 321 256-619 165-549 (567)
182 3fvz_A Peptidyl-glycine alpha- 99.5 7.6E-13 2.6E-17 154.2 26.4 252 204-480 23-321 (329)
183 3e5z_A Putative gluconolactona 99.5 2.5E-12 8.5E-17 146.7 30.1 247 199-485 22-290 (296)
184 2xdw_A Prolyl endopeptidase; a 99.5 3.6E-12 1.2E-16 164.4 34.4 251 245-526 123-416 (710)
185 3fvz_A Peptidyl-glycine alpha- 99.5 2.8E-12 9.6E-17 149.4 30.3 253 246-524 23-322 (329)
186 2z2n_A Virginiamycin B lyase; 99.5 6.8E-11 2.3E-15 133.4 38.4 285 243-575 11-297 (299)
187 2xdw_A Prolyl endopeptidase; a 99.5 7.2E-12 2.4E-16 161.6 31.1 246 287-575 123-416 (710)
188 3e5z_A Putative gluconolactona 99.5 1.8E-11 6.3E-16 139.5 29.1 250 236-525 17-287 (296)
189 2bkl_A Prolyl endopeptidase; m 99.4 3.2E-12 1.1E-16 164.5 25.0 276 214-526 77-399 (695)
190 3dsm_A Uncharacterized protein 99.4 3.4E-11 1.2E-15 140.5 29.8 272 224-534 15-309 (328)
191 2bkl_A Prolyl endopeptidase; m 99.4 7.6E-12 2.6E-16 161.0 25.3 279 255-576 76-400 (695)
192 2qc5_A Streptogramin B lactona 99.4 4.1E-10 1.4E-14 127.1 35.9 280 201-522 16-298 (300)
193 3dsm_A Uncharacterized protein 99.4 7.4E-11 2.5E-15 137.6 30.2 266 266-581 15-309 (328)
194 1rwi_B Serine/threonine-protei 99.4 1.7E-11 5.7E-16 137.0 23.7 241 206-483 25-266 (270)
195 1rwi_B Serine/threonine-protei 99.4 4.4E-11 1.5E-15 133.6 25.3 240 248-525 25-265 (270)
196 2mad_H Methylamine dehydrogena 99.4 5.2E-10 1.8E-14 133.2 35.6 288 212-532 28-356 (373)
197 3sjl_D Methylamine dehydrogena 99.4 1.9E-10 6.5E-15 136.7 31.4 305 210-553 38-384 (386)
198 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.9E-14 122.6 35.7 280 244-571 17-298 (300)
199 3no2_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 128.3 30.2 248 215-491 4-262 (276)
200 1yr2_A Prolyl oligopeptidase; 99.3 1.2E-10 4.3E-15 150.8 27.1 279 213-526 115-443 (741)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 9.9E-10 3.4E-14 125.3 29.3 245 201-481 14-299 (314)
202 3sjl_D Methylamine dehydrogena 99.3 1.2E-09 4.2E-14 129.8 30.8 299 252-589 38-384 (386)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.4E-09 4.7E-14 124.1 30.4 252 243-525 14-300 (314)
204 1yr2_A Prolyl oligopeptidase; 99.3 1.6E-10 5.6E-15 149.7 25.5 278 255-576 115-444 (741)
205 3no2_A Uncharacterized protein 99.3 9.2E-10 3.1E-14 125.5 28.1 214 257-512 4-231 (276)
206 3c75_H MADH, methylamine dehyd 99.2 1.3E-09 4.5E-14 131.5 29.2 289 214-533 82-409 (426)
207 2mad_H Methylamine dehydrogena 99.2 9.3E-09 3.2E-13 122.5 36.0 258 195-488 58-357 (373)
208 3hrp_A Uncharacterized protein 99.2 5.5E-09 1.9E-13 125.9 31.2 254 204-479 130-408 (409)
209 1xip_A Nucleoporin NUP159; bet 99.2 1.6E-09 5.3E-14 129.3 24.7 174 206-410 39-232 (388)
210 3g4e_A Regucalcin; six bladed 99.2 2E-08 6.9E-13 115.0 33.2 235 199-469 7-261 (297)
211 1kb0_A Quinohemoprotein alcoho 99.1 3.7E-09 1.2E-13 135.7 26.8 327 216-560 77-537 (677)
212 3q7m_A Lipoprotein YFGL, BAMB; 99.1 2E-07 6.7E-12 109.9 39.5 301 216-570 53-375 (376)
213 3c75_H MADH, methylamine dehyd 99.1 8.3E-09 2.9E-13 124.5 27.3 261 193-488 108-409 (426)
214 3g4e_A Regucalcin; six bladed 99.1 4.9E-08 1.7E-12 111.7 32.3 237 244-512 10-260 (297)
215 3dr2_A Exported gluconolactona 99.1 1.3E-08 4.6E-13 116.8 27.0 235 200-478 40-303 (305)
216 3hrp_A Uncharacterized protein 99.1 5.1E-08 1.8E-12 117.5 32.2 256 247-522 131-408 (409)
217 3iuj_A Prolyl endopeptidase; h 99.1 6.5E-09 2.2E-13 133.8 25.4 244 202-484 126-408 (693)
218 1yiq_A Quinohemoprotein alcoho 99.1 3.2E-08 1.1E-12 127.2 30.8 332 216-562 70-538 (689)
219 3iuj_A Prolyl endopeptidase; h 99.0 1.5E-08 5.1E-13 130.4 25.9 245 244-526 126-407 (693)
220 2qe8_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 119.6 22.7 283 194-520 9-317 (343)
221 1mda_H Methylamine dehydrogena 99.0 8.6E-09 2.9E-13 122.3 20.1 269 227-534 47-354 (368)
222 3dr2_A Exported gluconolactona 99.0 8.5E-08 2.9E-12 110.1 27.6 240 238-516 36-299 (305)
223 1mda_H Methylamine dehydrogena 99.0 2.5E-08 8.5E-13 118.4 23.4 265 193-501 55-365 (368)
224 2ghs_A AGR_C_1268P; regucalcin 99.0 2.9E-07 9.9E-12 107.0 31.9 226 206-469 50-291 (326)
225 1xip_A Nucleoporin NUP159; bet 98.9 1.3E-08 4.5E-13 121.3 19.0 182 290-511 39-231 (388)
226 2ghs_A AGR_C_1268P; regucalcin 98.9 7.7E-07 2.6E-11 103.4 33.4 231 249-513 51-291 (326)
227 2qe8_A Uncharacterized protein 98.9 7.3E-08 2.5E-12 112.8 23.0 224 201-469 63-310 (343)
228 3hxj_A Pyrrolo-quinoline quino 98.9 1.9E-08 6.4E-13 115.5 17.4 301 209-573 24-324 (330)
229 4a2l_A BT_4663, two-component 98.9 7.8E-06 2.7E-10 106.7 43.7 368 207-609 175-572 (795)
230 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.4E-06 8.3E-11 100.6 34.4 266 215-521 102-375 (376)
231 4a2l_A BT_4663, two-component 98.9 3.2E-05 1.1E-09 100.8 47.9 334 203-576 213-574 (795)
232 1kb0_A Quinohemoprotein alcoho 98.8 3.7E-07 1.3E-11 117.1 28.5 302 258-594 77-535 (677)
233 1yiq_A Quinohemoprotein alcoho 98.8 4.7E-07 1.6E-11 116.4 29.3 302 258-594 70-533 (689)
234 2hz6_A Endoplasmic reticulum t 98.7 4.9E-10 1.7E-14 133.2 -2.5 265 257-574 8-280 (369)
235 1fwx_A Nitrous oxide reductase 98.7 1.7E-07 5.9E-12 115.9 18.9 262 257-576 100-434 (595)
236 3hxj_A Pyrrolo-quinoline quino 98.7 1.9E-07 6.4E-12 107.1 18.1 291 251-604 24-320 (330)
237 1kv9_A Type II quinohemoprotei 98.7 2.8E-06 9.6E-11 108.8 29.6 308 216-534 66-496 (668)
238 3v9f_A Two-component system se 98.6 5.4E-05 1.8E-09 98.5 40.1 359 204-608 257-656 (781)
239 3v9f_A Two-component system se 98.6 7.8E-05 2.7E-09 97.0 41.5 334 204-575 210-570 (781)
240 2ece_A 462AA long hypothetical 98.6 5.3E-06 1.8E-10 99.5 27.6 243 209-468 86-399 (462)
241 2hz6_A Endoplasmic reticulum t 98.6 1.4E-08 4.9E-13 120.5 4.6 262 215-524 8-279 (369)
242 1fwx_A Nitrous oxide reductase 98.6 8.7E-07 3E-11 109.7 20.2 290 214-534 99-441 (595)
243 2ece_A 462AA long hypothetical 98.6 1.2E-05 4.1E-10 96.5 28.5 242 253-512 88-399 (462)
244 1w6s_A Methanol dehydrogenase 98.5 3.6E-05 1.2E-09 97.0 32.7 332 216-561 62-535 (599)
245 1flg_A Protein (quinoprotein e 98.5 6.9E-05 2.4E-09 94.3 34.8 333 216-561 68-548 (582)
246 1npe_A Nidogen, entactin; glyc 98.5 7.1E-05 2.4E-09 83.7 31.5 248 217-502 2-260 (267)
247 2ad6_A Methanol dehydrogenase 98.5 3E-05 1E-09 97.4 29.7 308 216-534 62-502 (571)
248 1npe_A Nidogen, entactin; glyc 98.4 0.00016 5.4E-09 80.9 31.5 253 259-555 2-263 (267)
249 1kv9_A Type II quinohemoprotei 98.4 2.2E-05 7.6E-10 100.4 27.6 289 258-581 66-496 (668)
250 2p4o_A Hypothetical protein; p 98.2 0.0016 5.6E-08 74.4 34.2 249 194-469 22-277 (306)
251 2iwa_A Glutamine cyclotransfer 98.2 0.00017 5.7E-09 81.5 24.9 210 194-423 9-238 (266)
252 2ad6_A Methanol dehydrogenase 98.2 0.00022 7.7E-09 89.4 28.6 289 258-581 62-502 (571)
253 2fp8_A Strictosidine synthase; 98.2 0.00042 1.4E-08 79.7 28.1 239 205-480 19-312 (322)
254 2iwa_A Glutamine cyclotransfer 98.1 0.00012 4.2E-09 82.6 21.3 192 394-608 23-237 (266)
255 2fp8_A Strictosidine synthase; 98.1 0.0017 5.7E-08 74.7 31.0 245 247-525 19-314 (322)
256 1w6s_A Methanol dehydrogenase 98.1 0.0006 2E-08 85.9 29.3 294 258-580 62-510 (599)
257 3nol_A Glutamine cyclotransfer 98.1 0.00013 4.3E-09 81.9 20.0 192 389-605 38-251 (262)
258 1k3i_A Galactose oxidase precu 98.1 0.00015 5.1E-09 92.6 23.0 282 251-562 190-530 (656)
259 2p4o_A Hypothetical protein; p 98.1 0.0013 4.3E-08 75.4 28.4 248 280-564 24-279 (306)
260 3nol_A Glutamine cyclotransfer 98.0 0.00034 1.2E-08 78.3 22.1 197 194-411 31-244 (262)
261 1flg_A Protein (quinoprotein e 98.0 0.0049 1.7E-07 77.5 35.4 292 259-581 69-524 (582)
262 2xbg_A YCF48-like protein; pho 97.9 0.011 3.8E-07 68.4 33.9 276 246-570 35-319 (327)
263 2xe4_A Oligopeptidase B; hydro 97.9 0.00086 2.9E-08 86.9 26.2 246 248-526 175-460 (751)
264 3tc9_A Hypothetical hydrolase; 97.9 0.0024 8.2E-08 77.2 28.5 256 206-479 138-428 (430)
265 1k3i_A Galactose oxidase precu 97.9 0.00062 2.1E-08 86.8 24.2 275 293-598 190-530 (656)
266 3v64_C Agrin; beta propeller, 97.9 0.0088 3E-07 70.0 31.9 238 249-525 36-276 (349)
267 3qqz_A Putative uncharacterize 97.9 0.0027 9.2E-08 71.2 25.9 209 198-418 20-249 (255)
268 3v64_C Agrin; beta propeller, 97.9 0.0058 2E-07 71.6 30.0 247 205-490 34-284 (349)
269 3s94_A LRP-6, low-density lipo 97.9 0.15 5.2E-06 64.3 46.8 344 202-575 124-512 (619)
270 3nok_A Glutaminyl cyclase; bet 97.9 0.00047 1.6E-08 77.3 19.1 161 394-580 57-217 (268)
271 3s94_A LRP-6, low-density lipo 97.9 0.16 5.4E-06 64.2 47.3 367 204-608 83-510 (619)
272 3mbr_X Glutamine cyclotransfer 97.8 0.0014 4.9E-08 72.7 22.6 192 389-605 16-230 (243)
273 4hw6_A Hypothetical protein, I 97.8 0.0066 2.2E-07 73.4 30.6 258 205-479 139-431 (433)
274 2xbg_A YCF48-like protein; pho 97.8 0.028 9.4E-07 65.0 34.6 275 203-522 34-320 (327)
275 3mbr_X Glutamine cyclotransfer 97.8 0.0023 8E-08 70.9 23.2 198 193-411 8-223 (243)
276 3v65_B Low-density lipoprotein 97.8 0.011 3.7E-07 70.2 30.9 238 249-525 79-319 (386)
277 2xe4_A Oligopeptidase B; hydro 97.8 0.0017 5.9E-08 84.1 25.7 197 290-522 175-398 (751)
278 3qqz_A Putative uncharacterize 97.8 0.015 5.2E-07 65.1 29.9 221 241-479 21-251 (255)
279 3v65_B Low-density lipoprotein 97.8 0.0085 2.9E-07 71.2 29.4 254 207-499 79-336 (386)
280 3ei3_A DNA damage-binding prot 97.8 0.067 2.3E-06 72.3 41.3 114 205-323 514-636 (1158)
281 3nok_A Glutaminyl cyclase; bet 97.7 0.0015 5E-08 73.3 20.7 183 207-411 57-254 (268)
282 4a0p_A LRP6, LRP-6, low-densit 97.7 0.25 8.6E-06 62.4 48.6 375 204-607 36-507 (628)
283 1ijq_A LDL receptor, low-densi 97.7 0.038 1.3E-06 63.6 33.0 230 225-489 9-246 (316)
284 1ijq_A LDL receptor, low-densi 97.7 0.023 7.7E-07 65.4 30.6 211 347-580 30-245 (316)
285 3ei3_A DNA damage-binding prot 97.6 0.085 2.9E-06 71.3 39.6 146 403-573 844-999 (1158)
286 3tc9_A Hypothetical hydrolase; 97.6 0.015 5.3E-07 70.0 28.8 253 248-522 138-428 (430)
287 3p5b_L Low density lipoprotein 97.6 0.048 1.7E-06 65.0 32.4 247 218-500 85-339 (400)
288 2xzh_A Clathrin heavy chain 1; 97.6 0.12 4.1E-06 59.4 32.7 270 225-525 48-333 (365)
289 4hw6_A Hypothetical protein, I 97.5 0.03 1E-06 67.7 29.5 253 248-522 140-431 (433)
290 3p5b_L Low density lipoprotein 97.5 0.035 1.2E-06 66.2 29.6 212 347-581 112-328 (400)
291 3sov_A LRP-6, low-density lipo 97.5 0.061 2.1E-06 62.0 30.6 224 267-525 12-239 (318)
292 1bpo_A Protein (clathrin); cla 97.5 0.23 8E-06 59.0 35.0 271 225-525 47-332 (494)
293 3kya_A Putative phosphatase; s 97.3 0.071 2.4E-06 65.2 29.5 274 206-486 140-480 (496)
294 3m0c_C LDL receptor, low-densi 97.3 0.058 2E-06 70.0 29.5 246 208-490 388-641 (791)
295 3m0c_C LDL receptor, low-densi 97.2 0.084 2.9E-06 68.5 30.7 211 347-580 424-639 (791)
296 3sov_A LRP-6, low-density lipo 97.2 0.11 3.7E-06 59.9 28.6 208 347-580 35-245 (318)
297 2ism_A Putative oxidoreductase 97.2 0.13 4.4E-06 60.2 28.7 101 204-311 30-153 (352)
298 3kya_A Putative phosphatase; s 97.1 0.19 6.6E-06 61.4 30.3 261 248-525 140-476 (496)
299 3ott_A Two-component system se 97.1 1.3 4.4E-05 57.0 43.0 338 204-576 145-505 (758)
300 3ott_A Two-component system se 97.1 1.4 4.6E-05 56.7 44.5 329 204-576 62-404 (758)
301 4a0p_A LRP6, LRP-6, low-densit 97.1 1.3 4.3E-05 56.0 52.1 347 202-575 120-510 (628)
302 3amr_A 3-phytase; beta-propell 96.9 0.1 3.5E-06 60.8 23.9 197 213-421 37-262 (355)
303 3a9g_A Putative uncharacterize 96.9 0.49 1.7E-05 55.3 29.9 243 289-561 29-330 (354)
304 3a9g_A Putative uncharacterize 96.8 0.26 9E-06 57.6 27.3 102 204-311 28-153 (354)
305 3amr_A 3-phytase; beta-propell 96.8 0.24 8.2E-06 57.7 26.2 211 257-489 39-272 (355)
306 2p9w_A MAL S 1 allergenic prot 96.8 0.074 2.5E-06 61.4 21.2 175 387-573 8-215 (334)
307 2p9w_A MAL S 1 allergenic prot 96.7 0.065 2.2E-06 61.9 20.2 158 208-376 16-214 (334)
308 2ism_A Putative oxidoreductase 96.7 0.44 1.5E-05 55.5 27.7 248 289-562 31-334 (352)
309 1n7d_A LDL receptor, low-densi 96.5 0.0046 1.6E-07 79.4 9.9 212 347-581 406-622 (699)
310 1cru_A Protein (soluble quinop 96.5 0.68 2.3E-05 56.1 28.6 105 204-312 26-163 (454)
311 2g8s_A Glucose/sorbosone dehyd 96.5 0.55 1.9E-05 54.8 26.8 103 205-312 18-149 (353)
312 1cru_A Protein (soluble quinop 96.4 2.8 9.4E-05 50.7 34.1 117 246-365 26-162 (454)
313 3das_A Putative oxidoreductase 96.4 1.5 5.1E-05 51.1 29.0 109 199-311 26-158 (347)
314 3das_A Putative oxidoreductase 96.3 1.4 4.8E-05 51.3 28.0 266 241-512 26-326 (347)
315 2vpj_A Kelch-like protein 12; 96.2 0.13 4.4E-06 58.0 18.5 192 357-575 62-280 (301)
316 2vpj_A Kelch-like protein 12; 96.2 0.36 1.2E-05 54.2 22.2 232 257-525 14-279 (301)
317 3pbp_A Nucleoporin NUP82; beta 96.1 0.27 9.1E-06 58.5 20.8 157 213-374 29-209 (452)
318 1n7d_A LDL receptor, low-densi 96.1 0.014 4.9E-07 74.8 11.1 205 205-427 406-619 (699)
319 2xn4_A Kelch-like protein 2; s 95.9 0.32 1.1E-05 54.8 19.7 148 357-525 61-230 (302)
320 3sre_A PON1, serum paraoxonase 95.8 4 0.00014 47.6 29.5 187 312-522 81-296 (355)
321 3ii7_A Kelch-like protein 7; p 95.7 0.38 1.3E-05 54.3 19.6 190 357-574 55-273 (306)
322 3ii7_A Kelch-like protein 7; p 95.5 0.54 1.9E-05 52.9 19.7 191 215-428 55-278 (306)
323 2g8s_A Glucose/sorbosone dehyd 95.4 5.3 0.00018 46.3 30.1 71 493-567 271-348 (353)
324 1xi4_A Clathrin heavy chain; a 95.4 0.7 2.4E-05 62.3 22.5 272 225-525 47-332 (1630)
325 3sre_A PON1, serum paraoxonase 95.3 1.9 6.5E-05 50.4 23.8 187 208-412 53-287 (355)
326 3pbp_A Nucleoporin NUP82; beta 95.2 0.52 1.8E-05 56.0 18.6 116 451-569 67-208 (452)
327 1zgk_A Kelch-like ECH-associat 95.2 0.61 2.1E-05 52.8 18.9 191 215-428 24-246 (308)
328 2xn4_A Kelch-like protein 2; s 95.1 0.77 2.6E-05 51.6 19.4 191 215-428 61-282 (302)
329 1bpo_A Protein (clathrin); cla 95.0 8.2 0.00028 46.1 35.2 262 268-577 48-335 (494)
330 2xzh_A Clathrin heavy chain 1; 94.9 7.2 0.00025 44.9 36.6 263 268-578 49-337 (365)
331 4asc_A Kelch repeat and BTB do 94.8 1.3 4.3E-05 50.2 20.4 187 219-428 8-227 (315)
332 3sbq_A Nitrous-oxide reductase 94.8 8.2 0.00028 47.4 27.5 303 219-534 73-488 (638)
333 1tl2_A L10, protein (tachylect 94.5 2 6.7E-05 46.8 19.2 155 392-567 41-204 (236)
334 4asc_A Kelch repeat and BTB do 94.2 2 7E-05 48.5 20.3 196 210-428 40-283 (315)
335 2xtc_A F-box-like/WD repeat-co 94.1 0.034 1.1E-06 51.4 3.8 47 2-67 10-56 (90)
336 2woz_A Kelch repeat and BTB do 94.0 1.3 4.4E-05 50.2 18.0 106 402-525 109-232 (318)
337 1zgk_A Kelch-like ECH-associat 93.9 1.6 5.3E-05 49.3 18.4 191 215-428 70-293 (308)
338 2be1_A Serine/threonine-protei 93.6 1.3 4.4E-05 51.5 16.9 200 217-425 11-234 (339)
339 1xi4_A Clathrin heavy chain; a 93.5 3.5 0.00012 55.9 22.5 264 268-579 48-337 (1630)
340 2woz_A Kelch repeat and BTB do 92.9 6 0.0002 44.6 21.2 196 211-428 52-293 (318)
341 2wg3_C Hedgehog-interacting pr 92.7 22 0.00075 42.9 29.2 120 289-413 14-160 (463)
342 3nxb_A CAT eye syndrome critic 92.6 0.044 1.5E-06 53.7 2.2 42 1100-1141 15-56 (116)
343 2uvk_A YJHT; unknown function, 92.2 2 6.9E-05 49.4 16.1 64 215-280 19-98 (357)
344 2uvk_A YJHT; unknown function, 91.9 0.94 3.2E-05 52.2 12.9 145 413-581 168-350 (357)
345 2zwa_A Leucine carboxyl methyl 91.5 3.6 0.00012 52.5 18.7 202 214-427 396-640 (695)
346 1tl2_A L10, protein (tachylect 91.5 0.92 3.1E-05 49.4 11.1 142 451-603 42-206 (236)
347 3q6k_A 43.2 kDa salivary prote 90.8 28 0.00097 40.8 23.8 172 203-377 85-306 (381)
348 2d9e_A Peregrin; four-helix bu 90.8 0.12 4E-06 51.1 2.9 39 1103-1141 9-47 (121)
349 3s25_A Hypothetical 7-bladed b 89.6 21 0.00071 40.5 21.0 175 209-421 57-254 (302)
350 3s25_A Hypothetical 7-bladed b 89.1 34 0.0012 38.7 27.8 212 214-482 23-256 (302)
351 3jvl_A Bromodomain-containing 89.0 0.08 2.8E-06 52.1 0.2 40 1102-1141 13-54 (120)
352 2ca6_A RAN GTPase-activating p 88.9 0.091 3.1E-06 61.9 0.6 9 1233-1241 311-319 (386)
353 2i7k_A Bromodomain-containing 88.7 0.27 9.1E-06 48.2 3.7 39 1104-1142 11-49 (117)
354 2dat_A Possible global transcr 88.6 0.24 8.3E-06 48.9 3.4 40 1102-1141 17-59 (123)
355 3uv4_A Second bromodomain of h 88.4 0.21 7.3E-06 51.6 2.9 43 1099-1141 26-70 (158)
356 3d7c_A General control of amin 88.1 0.21 7.2E-06 48.5 2.5 38 1104-1141 10-47 (112)
357 3g0l_A Hwalp4, bromodomain adj 87.9 0.33 1.1E-05 47.4 3.8 38 1101-1141 16-53 (117)
358 3q2e_A Bromodomain and WD repe 87.5 0.26 8.9E-06 48.7 2.8 35 1107-1141 16-50 (123)
359 1e6i_A Transcriptional activat 87.3 0.23 7.8E-06 49.0 2.2 39 1100-1141 15-53 (121)
360 3hme_A Bromodomain-containing 86.8 0.32 1.1E-05 48.1 2.9 39 1100-1141 15-53 (123)
361 3mb4_A Protein polybromo-1; PB 86.4 0.23 7.7E-06 49.2 1.6 42 1100-1141 17-61 (124)
362 3rcw_A Bromodomain-containing 86.2 0.31 1.1E-05 49.0 2.5 39 1103-1141 15-53 (135)
363 3sbq_A Nitrous-oxide reductase 86.1 61 0.0021 39.9 22.5 256 305-573 71-408 (638)
364 2yyn_A Transcription intermedi 85.8 0.41 1.4E-05 48.1 3.2 37 1102-1142 24-60 (135)
365 3p1f_A CREB-binding protein; s 85.4 0.36 1.2E-05 47.3 2.5 44 1098-1141 8-54 (119)
366 3dai_A ATPase family AAA domai 85.3 0.46 1.6E-05 47.4 3.3 38 1104-1141 13-50 (130)
367 2zwa_A Leucine carboxyl methyl 85.3 13 0.00043 47.4 17.5 153 356-525 396-578 (695)
368 3fkm_X Signaling protein; brom 85.0 0.61 2.1E-05 48.5 4.1 41 1102-1142 22-64 (166)
369 3b7f_A Glycosyl hydrolase, BNR 84.7 64 0.0022 37.3 30.3 157 347-511 115-296 (394)
370 3l6v_A GYRA, DNA gyrase subuni 84.6 67 0.0023 37.4 27.2 161 255-421 4-179 (370)
371 3mb3_A PH-interacting protein; 84.5 0.38 1.3E-05 48.3 2.2 35 1107-1141 27-61 (135)
372 2ouo_A HUNK1 protein, bromodom 84.3 0.28 9.6E-06 49.0 1.1 37 1102-1141 26-67 (130)
373 4gq2_M Nucleoporin NUP120; bet 83.5 1.2E+02 0.0042 39.8 26.2 74 449-523 235-316 (950)
374 3iu5_A Protein polybromo-1; PB 83.5 0.36 1.2E-05 47.1 1.5 42 1100-1141 7-51 (116)
375 2be1_A Serine/threonine-protei 83.3 23 0.00077 41.0 16.8 110 259-377 11-130 (339)
376 3qhy_B Beta-lactamase inhibito 82.8 47 0.0016 37.0 19.0 223 247-525 24-247 (282)
377 3mqm_A Probable histone-lysine 82.4 0.61 2.1E-05 46.2 2.7 41 1101-1141 12-55 (126)
378 4hvt_A Ritya.17583.B, post-pro 82.2 1.2E+02 0.0041 38.6 24.6 242 209-480 133-429 (711)
379 2grc_A Probable global transcr 82.2 0.44 1.5E-05 47.4 1.6 42 1101-1142 14-59 (129)
380 3kci_A Probable E3 ubiquitin-p 82.2 81 0.0028 36.6 31.9 253 305-574 63-346 (389)
381 3p8d_A Medulloblastoma antigen 82.0 1.1 3.6E-05 39.3 3.7 54 1006-1064 4-58 (67)
382 3tlp_A Protein polybromo-1; PB 80.7 0.54 1.9E-05 48.0 1.7 42 1100-1141 26-71 (150)
383 1suu_A DNA gyrase subunit A; t 80.6 82 0.0028 35.7 27.7 251 256-522 6-281 (312)
384 1zi0_A DNA gyrase subunit A; b 80.2 84 0.0029 35.5 28.7 252 256-524 1-277 (307)
385 2oss_A HUNK1 protein, bromodom 79.6 1.2 4E-05 44.2 3.6 33 1109-1141 29-63 (127)
386 3uv5_A Transcription initiatio 79.0 0.92 3.1E-05 50.9 3.0 42 1101-1142 14-55 (265)
387 2equ_A PHD finger protein 20-l 78.9 1.6 5.4E-05 39.1 3.8 53 1006-1063 7-60 (74)
388 4alg_A Bromodomain-containing 78.5 0.72 2.5E-05 47.4 1.8 33 1109-1141 40-74 (154)
389 3k2j_A Protein polybromo-1; PB 78.0 0.69 2.4E-05 46.1 1.4 41 1101-1141 20-63 (130)
390 3qii_A PHD finger protein 20; 77.9 1.5 5.3E-05 39.9 3.5 55 1005-1064 18-73 (85)
391 3no0_A DNA gyrase subunit A; D 76.9 97 0.0033 34.4 20.1 206 205-421 24-245 (276)
392 4gq2_M Nucleoporin NUP120; bet 76.9 1.3E+02 0.0045 39.5 23.2 37 393-429 237-273 (950)
393 2ri7_A Nucleosome-remodeling f 76.9 0.96 3.3E-05 47.3 2.2 37 1104-1140 75-111 (174)
394 2wg3_C Hedgehog-interacting pr 76.4 1.4E+02 0.0047 35.9 30.5 53 247-299 14-79 (463)
395 3qhy_B Beta-lactamase inhibito 76.0 1E+02 0.0035 34.2 19.3 182 206-421 25-206 (282)
396 4hvt_A Ritya.17583.B, post-pro 75.4 1.8E+02 0.0063 36.8 26.0 74 448-523 348-429 (711)
397 3b7f_A Glycosyl hydrolase, BNR 74.7 1.3E+02 0.0044 34.7 27.5 48 217-265 23-75 (394)
398 3ljw_A Protein polybromo-1; al 74.1 1.1 3.7E-05 44.0 1.6 41 1101-1141 11-54 (120)
399 3aad_A Transcription initiatio 73.4 1.6 5.4E-05 49.7 2.9 37 1107-1143 53-89 (292)
400 3o36_A Transcription intermedi 70.5 2.1 7.3E-05 45.1 3.0 35 1105-1140 85-119 (184)
401 2ldm_A Uncharacterized protein 72.7 0.93 3.2E-05 41.1 0.0 56 1006-1066 4-60 (81)
402 3s6w_A Tudor domain-containing 69.5 4 0.00014 33.9 3.8 48 1008-1059 1-51 (54)
403 3u5n_A E3 ubiquitin-protein li 67.9 3.3 0.00011 44.6 3.8 36 1105-1141 85-120 (207)
404 3uv5_A Transcription initiatio 66.5 2.6 8.8E-05 47.2 2.7 42 1100-1141 134-177 (265)
405 3uc1_A DNA gyrase subunit A; D 65.8 1.9E+02 0.0064 33.0 23.7 250 304-573 3-279 (327)
406 3kci_A Probable E3 ubiquitin-p 65.0 2E+02 0.0069 33.1 28.0 163 248-421 106-292 (389)
407 3aad_A Transcription initiatio 64.8 2.9 9.9E-05 47.5 2.7 40 1102-1141 169-210 (292)
408 3uc1_A DNA gyrase subunit A; D 63.6 2E+02 0.007 32.7 26.9 252 259-524 4-279 (327)
409 1suu_A DNA gyrase subunit A; t 60.7 2.2E+02 0.0075 32.1 26.3 199 214-422 6-231 (312)
410 1mhn_A SurviVal motor neuron p 60.7 6.4 0.00022 33.3 3.5 52 1007-1062 2-56 (59)
411 1wp5_A Topoisomerase IV; broke 60.3 2.3E+02 0.0078 32.2 26.7 252 256-524 3-277 (323)
412 2cn3_A Xyloglucanase, beta-1,4 58.9 3.6E+02 0.012 34.1 31.9 51 206-257 24-82 (737)
413 3no0_A DNA gyrase subunit A; D 58.9 2.2E+02 0.0075 31.5 21.3 206 347-573 24-246 (276)
414 4a4f_A SurviVal of motor neuro 58.6 6.9 0.00024 33.8 3.4 54 1006-1063 6-62 (64)
415 3pfe_A Succinyl-diaminopimelat 58.5 4.6 0.00016 48.9 3.1 73 599-682 93-179 (472)
416 2r10_A Chromatin structure-rem 57.4 4.3 0.00015 47.5 2.5 51 1092-1143 72-122 (361)
417 3pnw_C Tudor domain-containing 56.8 8.8 0.0003 34.5 3.9 52 1007-1062 16-70 (77)
418 3khx_A Putative dipeptidase sa 56.3 5.9 0.0002 48.2 3.6 72 599-681 103-187 (492)
419 3l6v_A GYRA, DNA gyrase subuni 55.5 2.9E+02 0.01 31.9 27.3 156 212-376 3-179 (370)
420 4fhn_B Nucleoporin NUP120; pro 55.0 97 0.0033 41.7 15.4 38 451-489 239-276 (1139)
421 1g5v_A SurviVal motor neuron p 54.7 8.6 0.00029 35.5 3.5 55 1005-1063 7-64 (88)
422 3cx5_F Cytochrome B-C1 complex 54.3 2.8 9.5E-05 42.0 0.2 21 1265-1285 56-76 (146)
423 2r0y_A Chromatin structure-rem 54.0 4.8 0.00017 46.0 2.1 27 1116-1142 178-204 (311)
424 2r10_A Chromatin structure-rem 52.9 5.1 0.00017 46.9 2.1 25 1117-1141 229-253 (361)
425 1q7l_A Aminoacylase-1; catalys 47.3 13 0.00044 39.3 4.0 70 600-679 77-161 (198)
426 3q6k_A 43.2 kDa salivary prote 46.3 4.1E+02 0.014 30.9 23.1 164 392-560 152-341 (381)
427 4fhn_B Nucleoporin NUP120; pro 45.7 36 0.0012 45.9 8.9 38 248-285 239-276 (1139)
428 2dkw_A Hypothetical protein KI 44.7 12 0.00041 37.2 3.0 31 1107-1142 18-48 (131)
429 1so2_A CGMP-inhibited 3',5'-cy 42.3 5.6 0.00019 47.4 0.2 18 1275-1292 386-403 (420)
430 3f7f_A Nucleoporin NUP120; nuc 39.1 2.4E+02 0.0081 35.8 14.0 37 248-286 223-259 (729)
431 2ro1_A Transcription intermedi 34.3 11 0.00037 39.9 0.8 31 1102-1139 80-110 (189)
432 3zwu_A Alkaline phosphatase PH 32.7 87 0.003 38.9 8.7 59 206-264 477-548 (592)
433 2d9t_A Tudor domain-containing 32.1 33 0.0011 30.7 3.5 54 1007-1064 8-64 (78)
434 3dlj_A Beta-Ala-His dipeptidas 30.6 24 0.00083 42.6 3.2 73 599-681 106-192 (485)
435 1wp5_A Topoisomerase IV; broke 30.4 6.3E+02 0.022 28.4 23.6 206 206-421 40-276 (323)
436 2r0y_A Chromatin structure-rem 28.2 18 0.00063 41.2 1.5 50 1093-1143 23-72 (311)
437 4d9s_A UVB-resistance protein 28.0 7.4E+02 0.025 28.5 34.7 292 206-524 17-357 (406)
438 4a9v_A PHOX; hydrolase, beta-p 27.9 1.6E+02 0.0054 36.4 9.6 61 205-265 476-549 (592)
439 4h2k_A Succinyl-diaminopimelat 27.9 38 0.0013 37.4 4.0 69 599-677 66-149 (269)
440 3zwu_A Alkaline phosphatase PH 27.3 8.3E+02 0.028 30.1 16.2 61 450-511 476-548 (592)
441 1sqj_A OXG-RCBH, oligoxylogluc 26.6 1.1E+03 0.037 29.9 33.5 153 204-367 14-190 (789)
442 1zi0_A DNA gyrase subunit A; b 26.3 7.1E+02 0.024 27.7 28.0 198 214-421 1-225 (307)
443 2cn3_A Xyloglucanase, beta-1,4 26.3 1.1E+03 0.036 29.7 24.9 53 247-300 23-83 (737)
444 2pok_A Peptidase, M20/M25/M40 25.5 39 0.0013 40.6 3.8 71 600-680 111-195 (481)
445 4d9s_A UVB-resistance protein 24.2 8.5E+02 0.029 27.9 36.2 300 247-574 16-358 (406)
446 1uuj_A Platelet-activating fac 24.2 38 0.0013 31.1 2.4 23 3-25 16-38 (88)
447 3f7f_A Nucleoporin NUP120; nuc 24.0 88 0.003 39.7 6.5 38 205-244 222-259 (729)
448 3t68_A Succinyl-diaminopimelat 23.3 43 0.0015 36.9 3.3 69 599-677 66-149 (268)
449 1lfw_A PEPV; hydrolase, dipept 22.7 32 0.0011 41.2 2.2 70 599-679 83-166 (470)
450 3fdr_A Tudor and KH domain-con 22.5 63 0.0022 29.6 3.8 52 1007-1063 26-80 (94)
451 2f7v_A Aectylcitrulline deacet 21.3 53 0.0018 37.9 3.7 70 599-679 71-147 (369)
452 4a9v_A PHOX; hydrolase, beta-p 21.2 1.2E+03 0.042 28.6 16.5 62 449-511 475-548 (592)
453 1zvt_A Topoisomerase IV subuni 20.2 8.4E+02 0.029 26.4 15.9 153 260-421 4-162 (256)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.6e-43 Score=444.39 Aligned_cols=436 Identities=15% Similarity=0.146 Sum_probs=334.3
Q ss_pred ceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCCeEEEEEcCCCC
Q psy6522 182 RFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNRNI 259 (1407)
Q Consensus 182 ~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg--~~l~tl~gH~~~ItsLafSpDg~ 259 (1407)
..+.+|... .......+.+|...|++++|+|+|++||+|+.||+|+|||+.++ .+..++.+|.+.|.+++|+|+++
T Consensus 39 ~~v~l~~~~--~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~ 116 (611)
T 1nr0_A 39 TSVYTVPVG--SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 116 (611)
T ss_dssp TEEEEEETT--CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred CEEEEecCC--CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCC
Confidence 456666542 34566788999999999999999999999999999999999754 45668899999999999999999
Q ss_pred EEEEEECC----CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccc
Q psy6522 260 LLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 335 (1407)
Q Consensus 260 lLaSgs~D----GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~ 335 (1407)
+|++++.+ +.|++|| ++.....+.+|...|++++|+|++ ...|++++.|++|++||......
T Consensus 117 ~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~---~~~l~s~s~D~~v~lwd~~~~~~--------- 182 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSR---PFRIISGSDDNTVAIFEGPPFKF--------- 182 (611)
T ss_dssp EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSS---SCEEEEEETTSCEEEEETTTBEE---------
T ss_pred EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCC---CeEEEEEeCCCeEEEEECCCCeE---------
Confidence 99999875 4677777 566777889999999999999975 24799999999999999765422
Q ss_pred cccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe-------ecCCCcceEEEcCCCCEEEE
Q psy6522 336 VMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-------EHSDKVDSIQWSHSHLRFVS 408 (1407)
Q Consensus 336 ~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~-------~h~~~V~sIafSpdg~~LaS 408 (1407)
...+..|...|.+++|+|+|.+|++|+.|+.|++||+.. ...+..+. +|.+.|.+++|+|++.+|++
T Consensus 183 ---~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s 256 (611)
T 1nr0_A 183 ---KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256 (611)
T ss_dssp ---EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE
T ss_pred ---eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC---CcEeeeeccccccccccCCCEEEEEECCCCCEEEE
Confidence 123456788999999999999999999999999999843 23344442 79999999999999999999
Q ss_pred EeCCCeEEEEEccCCceEEeeeccCcC---------------------------CCCCccccccccccccEEEEEECCCC
Q psy6522 409 GSRDGTALIWYYKCSQWRFIRLDMNTC---------------------------LPHTKETSDETNKKIKVTMVAWDASD 461 (1407)
Q Consensus 409 gs~DGtI~IWDl~t~~~~~~~l~~~~~---------------------------~~~~~~~~~~~~~~~~VtslafSpdg 461 (1407)
++.|++|+|||+.++++.......... ...........+|...|++++|+|++
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg 336 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence 999999999999988765432110000 00000112234688899999999999
Q ss_pred CEEEEEEecCCeEEEEECCCCceEEEE-ec--------------------------------------------------
Q psy6522 462 RWVITAINFNFQIKIWDAFNGDLVQVL-KG-------------------------------------------------- 490 (1407)
Q Consensus 462 ~~Lasgs~~DG~I~IWDl~tg~~l~~l-~g-------------------------------------------------- 490 (1407)
++|++++. |+.|++||+.++.+...+ .+
T Consensus 337 ~~l~s~s~-D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 337 KTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp SEEEEEET-TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred CEEEEEeC-CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 99999998 999999999876543322 11
Q ss_pred -------------------------------CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecC
Q psy6522 491 -------------------------------HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG 539 (1407)
Q Consensus 491 -------------------------------H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g 539 (1407)
|...+.+++|+| ++++|++|+.||+|+|||+.++....+.. .
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~------~ 488 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT------I 488 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE------E
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec------c
Confidence 234567899999 99999999999999999997762111222 1
Q ss_pred CCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC-Cccccc--cC------CceEecCCCcEEEec-CCCeeeEeeCCCC
Q psy6522 540 QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG-FKRPQN--IP------RELFFHTDYRTLNRP-NGLFEPTYDEVTN 609 (1407)
Q Consensus 540 ~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s-g~~~~~--lp------~~v~Fs~D~~~Lv~~-~~~~~~v~Dv~T~ 609 (1407)
.|...|++++|+|||++||+++.|++|++|++.+ ++.+.. +. ..+.|+||++.|+.. ..+.+.+||..+.
T Consensus 489 ~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 489 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 3567899999999999999999999999999987 554433 11 268999999999854 4566779999876
Q ss_pred CC-C-CcCCCCcccCCCCccCCCCCceEEeCCCCCCCCCcccc
Q psy6522 610 LP-P-HLMPPPFLVDLNGTPYPPEVQRLVPGRENADDTELLPD 650 (1407)
Q Consensus 610 ~~-~-~~~p~pfl~d~~G~~yppd~Q~Lv~GR~~sdn~~L~~~ 650 (1407)
.. . ..+..+..-.+....|+|+++ ||+|.. |..-.+|+
T Consensus 569 ~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~--D~~i~lW~ 608 (611)
T 1nr0_A 569 SDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQ--DSNIKFWN 608 (611)
T ss_dssp TSCCEEETTSSTTSCEEEEEEEETTE-EEEEET--TSCEEEEE
T ss_pred ccccchhhccCcccCeeEEEEcCCCE-EEEecC--CCCEEEEe
Confidence 42 2 222222123366778999998 887644 33444443
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-41 Score=422.46 Aligned_cols=405 Identities=22% Similarity=0.362 Sum_probs=330.5
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q psy6522 195 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 274 (1407)
Q Consensus 195 ~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWD 274 (1407)
+..++|.||++.|+||+|+|||++||+|+.|++|+|||. +++++.++.+|.+.|++|+|+||+++||+++.|++|+|||
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 455779999999999999999999999999999999995 7899999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeee----------------------
Q psy6522 275 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF---------------------- 332 (1407)
Q Consensus 275 l~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~---------------------- 332 (1407)
+ +++.+..+.+|...|.+++|+|++ .+|++++.|+.+++|+............
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDG----QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCC----CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence 6 578899999999999999999977 8999999999999999654321110000
Q ss_pred ------ccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEE
Q psy6522 333 ------HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 406 (1407)
Q Consensus 333 ------~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~L 406 (1407)
............+...|.+++|+|++.+|++++.|+.|++|+.. ...+..+.+|...|.+++|+|++.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEEEecCCCCEEEEEECCCCCEE
Confidence 00011112234566789999999999999999999999999963 34566788999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy6522 407 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 486 (1407)
Q Consensus 407 aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~ 486 (1407)
++++.|+.|++||..... .. ....+...|.+++|+|++..|++++. |+.|++||. +++++.
T Consensus 237 ~~~~~d~~i~~w~~~~~~-~~----------------~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~-~~~~~~ 297 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNGQL-LQ----------------TLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNR-NGQLLQ 297 (577)
T ss_dssp EEEETTSCEEEECTTSCE-EE----------------EECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEET-TSCEEE
T ss_pred EEEeCCCEEEEEeCCCCE-EE----------------EEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeC-CCcEEE
Confidence 999999999999965332 11 12346778999999999999999998 999999996 678889
Q ss_pred EEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeE
Q psy6522 487 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL 566 (1407)
Q Consensus 487 ~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I 566 (1407)
.+.+|...|++++|+| ++.+|++++.||.|++||+... .+..+. .+...|.+++|+|+|++|++++.+|.|
T Consensus 298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~---~~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ---HLQTLT-----GHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC---EEEEEC-----CCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC---eeEEEe-----CCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 9999999999999999 9999999999999999998654 233332 356789999999999999999999999
Q ss_pred EEEEcCCCccccccC------CceEecCCCcEEEec-CCCeeeEeeCCCCCCCCcCCCCcccCCCCccCCCCCceEEeCC
Q psy6522 567 LVYGLGGFKRPQNIP------RELFFHTDYRTLNRP-NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPGR 639 (1407)
Q Consensus 567 ~Iwdl~sg~~~~~lp------~~v~Fs~D~~~Lv~~-~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~~yppd~Q~Lv~GR 639 (1407)
++|+.. ++.+..+. ..+.|++|++.|+.. ....+.+||.... ....+..+ ...+.+..|+|+++.|++|.
T Consensus 369 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~-~~~~~~~~-~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGH-SSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp EEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCC-EEEEEECC-SSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-EEEEecCC-CCCeEEEEECCCCCEEEEEc
Confidence 999964 45544443 267899999998854 4566779995432 22222111 12255678999999999875
Q ss_pred C
Q psy6522 640 E 640 (1407)
Q Consensus 640 ~ 640 (1407)
.
T Consensus 446 ~ 446 (577)
T 2ymu_A 446 D 446 (577)
T ss_dssp T
T ss_pred C
Confidence 4
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-41 Score=426.63 Aligned_cols=414 Identities=13% Similarity=0.111 Sum_probs=324.6
Q ss_pred eeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEcCCCcEEEEEeCCCCCe
Q psy6522 174 REYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARDGKLLATLRGCSGEI 249 (1407)
Q Consensus 174 r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~D----G~V~IWDl~tg~~l~tl~gH~~~I 249 (1407)
..++|+.++.+.+|........+...+.+|.+.|.+++|+|+|++|++++.+ +.|++|| ++..+.++.+|...|
T Consensus 73 ~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 73 YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 5677888999999986433445567889999999999999999999999875 3677776 677788899999999
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccc
Q psy6522 250 SDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 328 (1407)
Q Consensus 250 tsLafSpDg~-lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~ 328 (1407)
++++|+|++. +|++|+.|++|++||..+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg----~~las~s~D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG----SLFASTGGDGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCEEE
T ss_pred eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC----CEEEEEECCCcEEEEECCCCcEee
Confidence 9999999987 69999999999999999999999999999999999999977 899999999999999988764432
Q ss_pred eeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC---------------------------
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP--------------------------- 381 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~--------------------------- 381 (1407)
..... ......|...|.+++|+|++.+|++++.|++|+|||+......
T Consensus 227 ~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 227 VFEDD-----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp ECBCT-----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred eeccc-----cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 22110 0112267889999999999999999999999999998532110
Q ss_pred -------------ceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeecc----------------
Q psy6522 382 -------------LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM---------------- 432 (1407)
Q Consensus 382 -------------~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~---------------- 432 (1407)
.....+.+|...|.+++|+|++.+|++++.||+|++||+.++.........
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 112345689999999999999999999999999999999887653321000
Q ss_pred --------------CcCC-CC----------Cccc-------------------------cccccccccEEEEEECCCCC
Q psy6522 433 --------------NTCL-PH----------TKET-------------------------SDETNKKIKVTMVAWDASDR 462 (1407)
Q Consensus 433 --------------~~~~-~~----------~~~~-------------------------~~~~~~~~~VtslafSpdg~ 462 (1407)
.... .. .... .....+...+.+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0000 00 0000 00001235678999999999
Q ss_pred EEEEEEecCCeEEEEECCCCce--EEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCC
Q psy6522 463 WVITAINFNFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQ 540 (1407)
Q Consensus 463 ~Lasgs~~DG~I~IWDl~tg~~--l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~ 540 (1407)
+|++++. |+.|+|||+.++.. +.. .+|...|++|+|+| ++++|++++.|++|++|++.+.. ..+.. ...+.
T Consensus 462 ~lasgs~-D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~-~~~~~---~~~~~ 534 (611)
T 1nr0_A 462 FVAVGGQ-DSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNF-ELAHT---NSWTF 534 (611)
T ss_dssp EEEEEET-TSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTT-EESCC---CCCCC
T ss_pred EEEEeCC-CCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCC-ceeee---eeeee
Confidence 9999998 99999999987654 334 68999999999999 99999999999999999998721 22221 01223
Q ss_pred CCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc-c-cccC-------CceEecCCCcEEE-ecCCCeeeEeeC
Q psy6522 541 GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR-P-QNIP-------RELFFHTDYRTLN-RPNGLFEPTYDE 606 (1407)
Q Consensus 541 ~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~-~-~~lp-------~~v~Fs~D~~~Lv-~~~~~~~~v~Dv 606 (1407)
|...|.+++|+|||++||+++.|++|+||++.++.. + ..+. ..+.|++|+. |+ ....+.+.+||+
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 678999999999999999999999999999988753 2 2221 2578999999 55 556677789986
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=5.1e-40 Score=410.49 Aligned_cols=377 Identities=24% Similarity=0.362 Sum_probs=324.3
Q ss_pred eeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEE
Q psy6522 174 REYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 253 (1407)
Q Consensus 174 r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLa 253 (1407)
..++++.++.+.+|.. ..+....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++
T Consensus 194 ~l~~~~~d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~ 269 (577)
T 2ymu_A 194 TIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVA 269 (577)
T ss_dssp CEEEEETTSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEE
Confidence 4567778888888875 34567788999999999999999999999999999999995 6788899999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec
Q psy6522 254 IDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333 (1407)
Q Consensus 254 fSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~ 333 (1407)
|+|++.+|++++.|+.|++|+.. ++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.....
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~----~~l~t~~~d~~i~~w~~~~~~~------- 337 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG----QTIASASDDKTVKLWNRNGQHL------- 337 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTSCEE-------
T ss_pred EcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeCCCCee-------
Confidence 99999999999999999999964 67788899999999999999976 8999999999999999764411
Q ss_pred cccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC
Q psy6522 334 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 413 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG 413 (1407)
..+..|...+.+++|+|++.+|++|+.|+.|++|+.. ...+..+.+|...|.+++|+|++.+|++++.|+
T Consensus 338 ------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 338 ------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ------EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 1233566889999999999999999999999999963 345667889999999999999999999999999
Q ss_pred eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCC
Q psy6522 414 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 493 (1407)
Q Consensus 414 tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~ 493 (1407)
.|++||... +... ....|...|++++|+|++++|++++. |+.|++||. +++++..+.+|..
T Consensus 408 ~v~~~~~~~-~~~~----------------~~~~~~~~v~~~~~s~d~~~l~~~~~-d~~v~~w~~-~~~~~~~~~~~~~ 468 (577)
T 2ymu_A 408 TVKLWNRNG-QLLQ----------------TLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLWNR-NGQLLQTLTGHSS 468 (577)
T ss_dssp EEEEECTTC-CEEE----------------EEECCSSCEEEEEECTTSSEEEEEET-TSEEEEEET-TSCEEEEEECCSS
T ss_pred EEEEEeCCC-CEEE----------------EecCCCCCeEEEEECCCCCEEEEEcC-CCEEEEEEC-CCCEEEEEcCCCC
Confidence 999999643 3221 12346778999999999999999998 999999996 6788999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
.|++++|+| ++++|++++.|+.|+|||. ++ ..+..+. .|...|++++|+|||++||+++.||.|+|||. +
T Consensus 469 ~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~--~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~ 538 (577)
T 2ymu_A 469 SVRGVAFSP-DGQTIASASDDKTVKLWNR-NG--QLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 538 (577)
T ss_dssp CEEEEEECT-TSCEEEEEETTSEEEEEET-TS--CEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred CEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CC--CEEEEEe-----CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C
Confidence 999999999 9999999999999999996 44 5555554 45788999999999999999999999999996 5
Q ss_pred CccccccCC------ceEecCCCcEEEec-CCCeeeEee
Q psy6522 574 FKRPQNIPR------ELFFHTDYRTLNRP-NGLFEPTYD 605 (1407)
Q Consensus 574 g~~~~~lp~------~v~Fs~D~~~Lv~~-~~~~~~v~D 605 (1407)
++++..+.. .+.|++|++.|+.. ....+.+||
T Consensus 539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 666665543 68899999999854 345566886
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.3e-40 Score=447.88 Aligned_cols=451 Identities=19% Similarity=0.274 Sum_probs=367.6
Q ss_pred EEEcCCCcceeecccccccceeeeecceeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCC
Q psy6522 147 LMISSHKTSLLVPNSVKVHNTVNVLRSREYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDL 226 (1407)
Q Consensus 147 ~~issh~~~il~~~~~~~~n~~~vl~~r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG 226 (1407)
..+.+|...+.+..... -....++++.++.+.+|... ..+....+.+|...|++++|+|+|++||+|+.||
T Consensus 609 ~~~~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAE--TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK 679 (1249)
T ss_dssp EEECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECC--CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence 44556666655432211 12345667788888888753 4567788999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCc
Q psy6522 227 LIKLWRARDGKLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 304 (1407)
Q Consensus 227 ~V~IWDl~tg~~l~tl~gH~~~ItsLafSp--Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~ 304 (1407)
.|+|||+.+++++.++.+|...|.+++|+| ++.+|++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++
T Consensus 680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---- 755 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---- 755 (1249)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST----
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC----
Confidence 999999999999999999999999999999 56699999999999999999999999999999999999999976
Q ss_pred eEEEEEecCCceeEEeeccccccceeeec---------------------------------------------------
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKTVFH--------------------------------------------------- 333 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~~~~--------------------------------------------------- 333 (1407)
.+|++++.||+|++||+.++.........
T Consensus 756 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~ 835 (1249)
T 3sfz_A 756 ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 835 (1249)
T ss_dssp TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEE
Confidence 89999999999999998765322111000
Q ss_pred ----------------------------------cccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCC-
Q psy6522 334 ----------------------------------EPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV- 378 (1407)
Q Consensus 334 ----------------------------------~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~- 378 (1407)
........+..|...|.+++|+|++.+|++++.||.|++|++...
T Consensus 836 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp ECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 000011223467788999999999999999999999999985310
Q ss_pred ---------------------------------------------------------------------------CCCce
Q psy6522 379 ---------------------------------------------------------------------------DSPLG 383 (1407)
Q Consensus 379 ---------------------------------------------------------------------------~~~~~ 383 (1407)
.....
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence 01122
Q ss_pred eEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCE
Q psy6522 384 ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW 463 (1407)
Q Consensus 384 i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~ 463 (1407)
+..+.+|...|.+++|+|++.+|++++.||.|++||+.++.... ...+...|.+++|++++.
T Consensus 996 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~- 1057 (1249)
T 3sfz_A 996 FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-----------------LQAHQETVKDFRLLQDSR- 1057 (1249)
T ss_dssp EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-----------------CBCCSSCEEEEEECSSSE-
T ss_pred eeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-----------------EecCCCcEEEEEEcCCCc-
Confidence 33455788999999999999999999999999999999876432 124678899999999764
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCC
Q psy6522 464 VITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEG 543 (1407)
Q Consensus 464 Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~ 543 (1407)
+++++. ||.|++||+.+++++..+.+|.+.|++++|+| ++.+|++++.||+|++||+.++ ..+..+. .|.+
T Consensus 1058 l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~--~~~~~l~-----~h~~ 1128 (1249)
T 3sfz_A 1058 LLSWSF-DGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLL--SPLHELK-----GHNG 1128 (1249)
T ss_dssp EEEEES-SSEEEEEETTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSS--SCSBCCC-----CCSS
T ss_pred EEEEEC-CCcEEEEECCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCc--ceeeeec-----cCCC
Confidence 566666 99999999999999999999999999999999 9999999999999999999988 5555544 4677
Q ss_pred ceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccccc---------------CCceEecCCCcEEEecCCCeeeEeeCCC
Q psy6522 544 ALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI---------------PRELFFHTDYRTLNRPNGLFEPTYDEVT 608 (1407)
Q Consensus 544 ~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~l---------------p~~v~Fs~D~~~Lv~~~~~~~~v~Dv~T 608 (1407)
.|++++|+|||++||+++.||.|++|++.+++.+..+ ...+.|++|++.++... +.+.+||..+
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVAT 1207 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSS
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCC
Confidence 8999999999999999999999999999999887655 23689999999998665 6677999998
Q ss_pred CCCCCcCCCCcccCCCCccCCCCCceEEeCC
Q psy6522 609 NLPPHLMPPPFLVDLNGTPYPPEVQRLVPGR 639 (1407)
Q Consensus 609 ~~~~~~~p~pfl~d~~G~~yppd~Q~Lv~GR 639 (1407)
+.....+..+ ...+....|+|++..|++|.
T Consensus 1208 g~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1208 GDSSQTFYTN-GTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp CBCCCCCCCS-SCCCCCCEECSSSCCEEEEC
T ss_pred Cceeeeeecc-CCcccEEEECCCCCEEEEec
Confidence 8766544332 22367788999999999863
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-40 Score=401.15 Aligned_cols=288 Identities=24% Similarity=0.435 Sum_probs=263.2
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q psy6522 198 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t 277 (1407)
..+.||.++|+|++|+|++.+|++|+.||+|+|||+.+++.+.++.+|...|++++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC
Q psy6522 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357 (1407)
Q Consensus 278 g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd 357 (1407)
++++..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++..... +..|...|.+++|+++
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~----~~l~s~s~D~~i~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQTGYCVKT------------FTGHREWVRMVRPNQD 245 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECTT
T ss_pred CceeEEEcCCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEECCCCcEEEE------------EeCCCccEEEEEECCC
Confidence 99999999999999999999976 8999999999999999987743322 2356688999999999
Q ss_pred CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC--------------------CCEEEEEeCCCeEEE
Q psy6522 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--------------------HLRFVSGSRDGTALI 417 (1407)
Q Consensus 358 g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd--------------------g~~LaSgs~DGtI~I 417 (1407)
+.+|++|+.|+.|++||+. .......+.+|...|.+++|+|+ +.+|++|+.||+|++
T Consensus 246 g~~l~s~s~D~~v~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i 322 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVA---TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322 (410)
T ss_dssp SSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECC---CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence 9999999999999999994 34556678899999999999996 678999999999999
Q ss_pred EEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEE
Q psy6522 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFV 497 (1407)
Q Consensus 418 WDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~s 497 (1407)
||+.++.+.... .+|...|.+++|+|++.+|++++. |+.|++||+.+++++..+.+|...|++
T Consensus 323 wd~~~~~~~~~~----------------~~h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 323 WDVSTGMCLMTL----------------VGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp EETTTTEEEEEE----------------ECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred EECCCCceEEEE----------------ECCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 999988754432 347778999999999999999998 999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 498 LESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 498 LafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
++|+| ++.+|++|+.||+|+||++
T Consensus 386 l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEC-
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 99999 9999999999999999986
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-38 Score=371.99 Aligned_cols=292 Identities=19% Similarity=0.356 Sum_probs=260.7
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVW 273 (1407)
++...+|.||.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|+||
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC----ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcce
Q psy6522 274 NLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 274 Dl~tg----~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I 349 (1407)
++.+. .....+.+|.+.|.++.|++++ .|++++.|++|++||+.++.... .+..|...|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~s~s~d~~i~~wd~~~~~~~~------------~~~~h~~~v 187 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----QIVTSSGDTTCALWDIETGQQTT------------TFTGHTGDV 187 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-----EEEEEETTSCEEEEETTTTEEEE------------EECCCSSCE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-----cEEEEECCCcEEEEECCCCcEEE------------EEcCCCCce
Confidence 99865 3556788999999999999863 59999999999999998763322 234577899
Q ss_pred EEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEee
Q psy6522 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 350 ~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~ 429 (1407)
.+++|+|++.+|++|+.|+.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.....
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT---TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECC---CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 999999999999999999999999994 34566778899999999999999999999999999999999987644321
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEE
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 509 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~La 509 (1407)
. ...+...|.+++|+|++.+|++++. |+.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|+
T Consensus 265 ~--------------~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~ 328 (340)
T 1got_B 265 S--------------HDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVA 328 (340)
T ss_dssp C--------------CTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred c--------------cCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEE
Confidence 1 1123457999999999999999998 99999999999999999999999999999999 999999
Q ss_pred EEeCCCcEEEEE
Q psy6522 510 SAGHDGLIIIWD 521 (1407)
Q Consensus 510 Sgs~DG~V~IWD 521 (1407)
||+.||+|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.8e-38 Score=427.19 Aligned_cols=419 Identities=15% Similarity=0.154 Sum_probs=341.1
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q psy6522 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275 (1407)
Q Consensus 196 ~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl 275 (1407)
....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+++.+.++.+|...|++++|+|++++||+|+.|++|+|||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC
Q psy6522 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 355 (1407)
Q Consensus 276 ~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS 355 (1407)
.+++.+..+.+|...|.+++|+|++ +..++++++.||.|++||+.++.... .+..|...|.+++|+
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~------------~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKS--NHLLLATGSNDFFLKLWDLNQKECRN------------TMFGHTNSVNHCRFS 752 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSS--SCCEEEEEETTSCEEEEETTSSSEEE------------EECCCSSCEEEEEEC
T ss_pred CCCceEEEEcCCCCcEEEEEEecCC--CceEEEEEeCCCeEEEEECCCcchhh------------eecCCCCCEEEEEEe
Confidence 9999999999999999999999964 45799999999999999998774322 233567899999999
Q ss_pred CCCceEEEeeCCceEEEEeccCCCCC---------------------------------------------------cee
Q psy6522 356 PGGLFLATGSGDHHVRVYKMDGVDSP---------------------------------------------------LGI 384 (1407)
Q Consensus 356 pdg~~Lasgs~DG~I~IwDl~~~~~~---------------------------------------------------~~i 384 (1407)
|++.+|++++.||.|++||+...... ..+
T Consensus 753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 99999999999999999998532100 001
Q ss_pred EE-EeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcC-------CCCC----------ccccc--
Q psy6522 385 LE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-------LPHT----------KETSD-- 444 (1407)
Q Consensus 385 ~~-l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~-------~~~~----------~~~~~-- 444 (1407)
.. ..+|...|.+++|+|++.++++++.||.|++||+.++............ .... .....
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 11 1267889999999999999999999999999999987654332111000 0000 00000
Q ss_pred --------------------------------------------cccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 445 --------------------------------------------ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 445 --------------------------------------------~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
.......+.+++|+|++.++++++. +|.|++||+.
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~-~g~i~i~d~~ 991 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE-DGAIKIIELP 991 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET-TSCCEEEETT
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC-CCCEEEEEcC
Confidence 0011345788899999999998888 9999999999
Q ss_pred CCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEE
Q psy6522 481 NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 560 (1407)
Q Consensus 481 tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsg 560 (1407)
+++.+..+.+|...|++++|+| ++++|++++.||.|++||+.++ ..... ..+...|.+++|++++ .++++
T Consensus 992 ~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~--~~~~~------~~~~~~v~~~~~~~~~-~l~~~ 1061 (1249)
T 3sfz_A 992 NNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTG--DYVFL------QAHQETVKDFRLLQDS-RLLSW 1061 (1249)
T ss_dssp TTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTT--EEECC------BCCSSCEEEEEECSSS-EEEEE
T ss_pred CCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC--ceEEE------ecCCCcEEEEEEcCCC-cEEEE
Confidence 9999999999999999999999 9999999999999999999988 43322 1456889999999976 57788
Q ss_pred eCCCeEEEEEcCCCccccccC------CceEecCCCcEEEec-CCCeeeEeeCCCCCCCCcCCCCcccCCCCccCCCCCc
Q psy6522 561 DSYGHLLVYGLGGFKRPQNIP------RELFFHTDYRTLNRP-NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQ 633 (1407)
Q Consensus 561 s~DG~I~Iwdl~sg~~~~~lp------~~v~Fs~D~~~Lv~~-~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~~yppd~Q 633 (1407)
+.||.|++||+.+++....+. ..+.|++|++.++.. ..+.+.+||..++.+...+..+ ...+....|+|+++
T Consensus 1062 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH-NGCVRCSAFSLDGI 1140 (1249)
T ss_dssp ESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC-SSCEEEEEECSSSS
T ss_pred ECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC-CCcEEEEEECCCCC
Confidence 999999999999998876654 378999999988744 4455679999888766655433 22366778999999
Q ss_pred eEEeCCC
Q psy6522 634 RLVPGRE 640 (1407)
Q Consensus 634 ~Lv~GR~ 640 (1407)
.||+|..
T Consensus 1141 ~lat~~~ 1147 (1249)
T 3sfz_A 1141 LLATGDD 1147 (1249)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 9999854
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=366.97 Aligned_cols=289 Identities=22% Similarity=0.345 Sum_probs=258.2
Q ss_pred EEEEcCCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEcCCCcE--EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy6522 197 HYVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKL--LATLRGCSGEISDIAIDNRNILLAAGTVDKTI 270 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSpd----G~~LaTGS~DG~V~IWDl~tg~~--l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtI 270 (1407)
.+.+.+|.+.|++|+|+|+ +.+|+||+.|++|+||++.++.. ...+.+|...|.+++|++++.+|++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4567899999999999985 67999999999999999987754 45789999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 271 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 271 rVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
+|||+.+++.+..+..|...+.+++|+|++ .+|++++.||.|++|++..+..... +..+...|.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~g~~dg~v~i~~~~~~~~~~~------------~~~~~~~v~ 168 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS----QYLATGTHVGKVNIFGVESGKKEYS------------LDTRGKFIL 168 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTS----SEEEEECTTSEEEEEETTTCSEEEE------------EECSSSCEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCC----CEEEEEcCCCcEEEEEcCCCceeEE------------ecCCCceEE
Confidence 999999999999999999999999999977 8999999999999999987643222 223456799
Q ss_pred EEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q psy6522 351 CSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 430 (1407)
Q Consensus 351 ~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l 430 (1407)
+++|+|++++|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||+|+|||+.++.....
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-- 243 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIA---TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-- 243 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECC---CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--
Confidence 99999999999999999999999994 3456777889999999999999999999999999999999987764432
Q ss_pred ccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEE
Q psy6522 431 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 510 (1407)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaS 510 (1407)
...|...|.+++|+|++.+|++++. |+.|+|||+.+++++..+.+|...|++++|+| ++.+|++
T Consensus 244 --------------~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s 307 (321)
T 3ow8_A 244 --------------LSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVS 307 (321)
T ss_dssp --------------ECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred --------------EcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEE
Confidence 2357788999999999999999998 99999999999999999999999999999999 9999999
Q ss_pred EeCCCcEEEEEC
Q psy6522 511 AGHDGLIIIWDI 522 (1407)
Q Consensus 511 gs~DG~V~IWDi 522 (1407)
++.||+|+|||+
T Consensus 308 ~~~d~~i~vwd~ 319 (321)
T 3ow8_A 308 VGDDQEIHIYDC 319 (321)
T ss_dssp EETTCCEEEEEC
T ss_pred EeCCCeEEEEeC
Confidence 999999999996
No 10
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-38 Score=371.78 Aligned_cols=341 Identities=16% Similarity=0.242 Sum_probs=278.0
Q ss_pred EEEcCCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEc----CCCc------EEEEEeC----------CCCCeEEEEEcC
Q psy6522 198 YVNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRA----RDGK------LLATLRG----------CSGEISDIAIDN 256 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpdG~-~LaTGS~DG~V~IWDl----~tg~------~l~tl~g----------H~~~ItsLafSp 256 (1407)
.....|.+.|+|++|+|+|+ +||+|+.||.|+||++ .+++ ....+.. |.+.|++++|+|
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence 33456779999999999999 9999999999999999 8888 5666654 788999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccc
Q psy6522 257 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 336 (1407)
Q Consensus 257 Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~ 336 (1407)
++++|++|+.||.|+||| .++..+..+..|...|.+++|+|++ .+|++++.||.|++||+.++............
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG----THIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS----SEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC----CEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 999999999999999999 6788899999999999999999976 89999999999999999877544332221110
Q ss_pred c---cccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC
Q psy6522 337 M---FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG 413 (1407)
Q Consensus 337 ~---~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG 413 (1407)
. ...........+.+++|++++ .+++++.+|.|++||+.. ...+..+..|...|.+++|+|++.+|++++.||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITE---KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp ------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTC---SSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCC---CceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 0 000011112238889999875 588889999999999943 344556778999999999999999999999999
Q ss_pred eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCC
Q psy6522 414 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 493 (1407)
Q Consensus 414 tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~ 493 (1407)
.|++||+.+++.... ...+...|.+++|+|++ ++++++. |+.|++||+.+++++..+..|..
T Consensus 270 ~i~i~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNC----------------FYGHSQSIVSASWVGDD-KVISCSM-DGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp CEEEECSSSBSCSEE----------------ECCCSSCEEEEEEETTT-EEEEEET-TSEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEEECCCCccceE----------------ecCCCccEEEEEECCCC-EEEEEeC-CCcEEEEECCCCcEeEecccCCc
Confidence 999999987653321 13467789999999999 8888887 99999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCcc--------------------ceeeeeeeecCCCCC-ceeEEEECC
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR--------------------GYKWFHNIVEGQGEG-ALFDGKWSP 552 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~--------------------~l~~~~~~~~g~~~~-~I~slafSp 552 (1407)
.|.+++|+| ++.+|++++.||.|+|||+.++ . .+..+. ++..+ .|.+++|+|
T Consensus 332 ~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 332 PIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKL--NSKSRSLYGNRDGILNPLPIPLYASYQ----SSQDNDYIFDLSWNC 404 (425)
T ss_dssp CEEEEEECT-TSSEEEEEETTSCEEEEECHHH--HC--------------CEECCEEEEEC----CTTCCCCEEEEEECT
T ss_pred cEEEEEEcC-CCCEEEEEECCCeEEEEECCCC--ccceeeeecccccccCcccchhhhhhc----CcccCCceEEEEccC
Confidence 999999999 9999999999999999999876 3 333333 22223 899999999
Q ss_pred CCCEEEEEeCCCeEEEEEcC
Q psy6522 553 DGTTCALTDSYGHLLVYGLG 572 (1407)
Q Consensus 553 DG~~LAsgs~DG~I~Iwdl~ 572 (1407)
++++|++++.||.|++|++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEecCceEEEEeec
Confidence 99999999999999999985
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=368.87 Aligned_cols=317 Identities=19% Similarity=0.268 Sum_probs=254.9
Q ss_pred ceeEEEEEcCCCC-CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEE--E-EeCCCCCeEEEEEcCCCCEEEEEECCC
Q psy6522 193 NLRQHYVNLGHLS-AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA--T-LRGCSGEISDIAIDNRNILLAAGTVDK 268 (1407)
Q Consensus 193 ~~~~~~~L~GH~~-~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~--t-l~gH~~~ItsLafSpDg~lLaSgs~DG 268 (1407)
.+.++.++.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..+. . ..+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4677889999988 99999999999999999999999999998886432 2 368999999999999999999999999
Q ss_pred eEEEEeCCCC--ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC
Q psy6522 269 TIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 269 tIrVWDl~tg--~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~ 346 (1407)
+|+||++.++ .++..+.+|...|.+++|+|++ .+|++++.|++|++||+....... ....+..|.
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----~~l~s~s~D~~v~iwd~~~~~~~~---------~~~~~~~h~ 150 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG----NLLATCSRDKSVWVWEVDEEDEYE---------CVSVLNSHT 150 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEEECTTSCEE---------EEEEECCCC
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC----CEEEEEECCCeEEEEECCCCCCeE---------EEEEecCcC
Confidence 9999999876 4577889999999999999976 899999999999999997653211 122344677
Q ss_pred cceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q psy6522 347 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 426 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~ 426 (1407)
..|.+++|+|++.+|++|+.|+.|++|++.. ........+.+|...|.+++|+|++.+|++|+.||+|+||+.......
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 8899999999999999999999999999843 223445678899999999999999999999999999999997533210
Q ss_pred EeeeccCcCCCCCc-cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeE
Q psy6522 427 FIRLDMNTCLPHTK-ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVF 496 (1407)
Q Consensus 427 ~~~l~~~~~~~~~~-~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~---------~l~~l~gH~~~V~ 496 (1407)
.... ......... .......|...|.+++|++++..|++++. |+.|++|+...+. ....+.+|...|+
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 307 (345)
T 3fm0_A 230 QGVA-CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307 (345)
T ss_dssp TCCC-CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE
T ss_pred ccce-eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEe
Confidence 0000 000000000 00111236778999999999999999998 9999999986542 1223458999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 497 VLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 497 sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+|+|+|....+|+||+.||+|+||++.++
T Consensus 308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 308 CVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 99999933469999999999999999887
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-37 Score=357.40 Aligned_cols=296 Identities=16% Similarity=0.249 Sum_probs=256.0
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVW 273 (1407)
+.+.++|.+|.+.|++|+|+|++++|++|+.||+|+|||+.++..+..+.+|...|.+++|++++++|++|+.|++|+||
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 274 Dl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
|+.+++.+..+.+|.+.|.+++|+|++ .+|++|+.|++|++||+..+... ...+..|...|.+++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~sgs~D~~v~lWd~~~~~~~-----------~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWNWENNWAL-----------EQTFEGHEHFVMCVA 147 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEEGGGTTEE-----------EEEECCCCSCEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCC----CEEEEECCCCeEEEEECCCCcch-----------hhhhcccCCcEEEEE
Confidence 999999999999999999999999976 89999999999999999765221 122346778999999
Q ss_pred ECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC--CCCEEEEEeCCCeEEEEEccCCceEEeee
Q psy6522 354 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRL 430 (1407)
Q Consensus 354 fSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp--dg~~LaSgs~DGtI~IWDl~t~~~~~~~l 430 (1407)
|+| ++.+|++|+.|+.|++||+..... .......|...|..+.|++ ++.+|++|+.||+|++||+.++++....
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~- 224 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL- 224 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-
Confidence 999 678999999999999999943322 1222345667899999986 6779999999999999999988754432
Q ss_pred ccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCC-EEE
Q psy6522 431 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLL 509 (1407)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~-~La 509 (1407)
..|...|.+++|+|++.+|++++. ||.|+|||+.+++++..+..|...+++++|+|.++. +|+
T Consensus 225 ---------------~~h~~~v~~~~~~p~~~~l~s~s~-Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 225 ---------------EGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp ---------------ECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred ---------------CCCCCCEEEEEECCCCCEEEEEcC-CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 357788999999999999999998 999999999999999999999999999999993333 466
Q ss_pred EEeCCCcEEEEECCC
Q psy6522 510 SAGHDGLIIIWDILS 524 (1407)
Q Consensus 510 Sgs~DG~V~IWDi~s 524 (1407)
+|+ |..+.+|++..
T Consensus 289 sg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 289 SGF-DNGFTVLSLGN 302 (304)
T ss_dssp EEE-TTEEEEEECC-
T ss_pred Eec-CCceEEEEecc
Confidence 665 45577888754
No 13
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-38 Score=376.49 Aligned_cols=310 Identities=21% Similarity=0.287 Sum_probs=265.3
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRI 272 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrV 272 (1407)
.+...++|.||.+.|+|++|+|++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCc-------eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 273 WNLQTLA-------PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 273 WDl~tg~-------~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
|++.+.. ....+.+|.+.|.++.|+|+. ...|++|+.|++|++||+.++........ .....|
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~---~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-------~~~~~h 204 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ---ETRLITGSGDQTCVLWDVTTGQRISIFGS-------EFPSGH 204 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS---SSCEEEECTTSCEEEECTTTCCEEEEECC-------CSSSSC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCC---CCEEEEECCCCcEEEEEcCCCcEEEEeec-------ccCCCC
Confidence 9996532 345678999999999999963 36799999999999999988754432211 112357
Q ss_pred CcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q psy6522 346 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 424 (1407)
Q Consensus 346 ~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~ 424 (1407)
...|.+++|++ ++.+|++|+.|+.|++||+... ...+..+.+|.+.|.+++|+|++.+|++|+.||+|+|||+.++.
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 78899999987 8899999999999999999532 23456778999999999999999999999999999999999987
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE----ecCCCCeEEEEE
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL----KGHTNEVFVLES 500 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l----~gH~~~V~sLaf 500 (1407)
.......... ....+...|++++|+|+|.+|++++. ||.|++||+.+++.+..+ .+|.+.|++++|
T Consensus 283 ~~~~~~~~~~---------~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 283 QLQVYNREPD---------RNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEECCCCS---------SSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEeccccc---------ccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 6553321100 01123345889999999999999998 999999999999998887 689999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 501 HPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 501 sP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+| ++.+|+||+.||+|+||++...
T Consensus 353 s~-dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 353 SS-DGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CS-SSSEEEEECTTSCEEEEECCSS
T ss_pred CC-CCCEEEEeeCCCCEEEEecCCC
Confidence 99 9999999999999999999765
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7e-37 Score=383.42 Aligned_cols=431 Identities=14% Similarity=0.114 Sum_probs=330.4
Q ss_pred CceEEEecCCCC--ceeEEEEEcCCCCC-EEEEEEcC--CCCEEEEEECCCeEEEEEcCCC--------cEEEEEeCCCC
Q psy6522 181 SRFLMISSHKYS--NLRQHYVNLGHLSA-VFCVLFDK--LGEVIVTGADDLLIKLWRARDG--------KLLATLRGCSG 247 (1407)
Q Consensus 181 ~~~~~i~~~~~~--~~~~~~~L~GH~~~-V~~vafSp--dG~~LaTGS~DG~V~IWDl~tg--------~~l~tl~gH~~ 247 (1407)
+..+.+|..... ..+....+.+|... |++++|+| ++++||+|+.||.|+|||+.++ ..+..+.+|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 445666654311 12677889999999 99999999 9999999999999999999855 77888999999
Q ss_pred CeEEEEEcCCCCEEEEEECC----CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc
Q psy6522 248 EISDIAIDNRNILLAAGTVD----KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 323 (1407)
Q Consensus 248 ~ItsLafSpDg~lLaSgs~D----GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t 323 (1407)
.|.+++|+|++++|++++.+ +.|.+|| +++.+..+.+|...|.+++|+|++ ..+|++++.|+.|++||+..
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR---PMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS---SCEEEEEETTTEEEEEETTT
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC---CcEEEEEeCCCcEEEEeCCC
Confidence 99999999999999999988 6888888 677888999999999999999975 23899999999999999876
Q ss_pred ccccceeeeccccccccccCCCCc---ceEEEEECCC-CceEEEeeCCceEEEEeccCCCCCceeEEE-e---ecCCCcc
Q psy6522 324 DIDISKTVFHEPVMFNERIRPGNA---HILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV-E---EHSDKVD 395 (1407)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~h~~---~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-~---~h~~~V~ 395 (1407)
...... +..|.. .|.+++|+|+ +.+|++++.||.|++||+. ....+..+ . .|...|.
T Consensus 193 ~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 193 FKFSAS------------DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp BEEEEE------------ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---TCCEEEECCBTTBCCCSCEE
T ss_pred cceeee------------ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC---CCCEeEEecccccccCCceE
Confidence 633222 234556 8999999999 9999999999999999994 33445556 5 8999999
Q ss_pred eEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy6522 396 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475 (1407)
Q Consensus 396 sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~ 475 (1407)
+++|+ ++.+|++++.||.|++||+.+++........ .......+.++.|+ ++.++++++. +|.|+
T Consensus 258 ~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~l~~~~~-~g~i~ 322 (615)
T 1pgu_A 258 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD------------KQQLGNQQVGVVAT-GNGRIISLSL-DGTLN 322 (615)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC------------TTCGGGCEEEEEEE-ETTEEEEEET-TSCEE
T ss_pred EEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC------------CCcccCceeEEEeC-CCCeEEEEEC-CCCEE
Confidence 99999 9999999999999999999988755432210 02234567888886 8899999998 99999
Q ss_pred EEECCCCceEEEEecCCCCeEEEEEecC--------------------------------CCCEEEEEeCCCcEEEEECC
Q psy6522 476 IWDAFNGDLVQVLKGHTNEVFVLESHPF--------------------------------DSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 476 IWDl~tg~~l~~l~gH~~~V~sLafsP~--------------------------------dg~~LaSgs~DG~V~IWDi~ 523 (1407)
+||+.+++++..+.+|...|.+++| |. ++..|++++.||.|++||+.
T Consensus 323 ~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~ 401 (615)
T 1pgu_A 323 FYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGIT 401 (615)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEE
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcc
Confidence 9999999998888888777777666 41 14455555555555555543
Q ss_pred CCCc-------------------------------------------------------------cceeeee-----e--
Q psy6522 524 SSKQ-------------------------------------------------------------RGYKWFH-----N-- 535 (1407)
Q Consensus 524 sgk~-------------------------------------------------------------~~l~~~~-----~-- 535 (1407)
+++. ..+..+. .
T Consensus 402 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~ 481 (615)
T 1pgu_A 402 KHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 481 (615)
T ss_dssp EEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred cCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc
Confidence 2100 0000000 0
Q ss_pred eecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccCC-------ceEecC----------CCcEEEec-C
Q psy6522 536 IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR-------ELFFHT----------DYRTLNRP-N 597 (1407)
Q Consensus 536 ~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp~-------~v~Fs~----------D~~~Lv~~-~ 597 (1407)
.....+...|.+++|+|+|++|++++.||.|++|++.+++.+..+.. .+.|+| +++.|+.. .
T Consensus 482 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~ 561 (615)
T 1pgu_A 482 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 561 (615)
T ss_dssp ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence 11123567899999999999999999999999999999998776642 689999 99999854 4
Q ss_pred CCeeeEeeCCCC-CCCCcCCCCcccCCCCccCCCCCceEEeCCCCCCCCCccccc
Q psy6522 598 GLFEPTYDEVTN-LPPHLMPPPFLVDLNGTPYPPEVQRLVPGRENADDTELLPDI 651 (1407)
Q Consensus 598 ~~~~~v~Dv~T~-~~~~~~p~pfl~d~~G~~yppd~Q~Lv~GR~~sdn~~L~~~~ 651 (1407)
.+.+.+||..++ .....+..+ ...+....|+|+++ |++|.. |..-.+|++
T Consensus 562 dg~i~iw~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~-l~s~~~--d~~v~iw~~ 612 (615)
T 1pgu_A 562 DTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGA--DACIKRWNV 612 (615)
T ss_dssp TSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEET--TSCEEEEEE
T ss_pred CCcEEEEECCCCceechhhhcC-ccceEEEEEcCCCC-eEEecC--CceEEEEee
Confidence 566779999886 333333322 23377788999999 888743 333444443
No 15
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-37 Score=364.89 Aligned_cols=292 Identities=22% Similarity=0.347 Sum_probs=259.0
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q psy6522 195 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 274 (1407)
Q Consensus 195 ~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWD 274 (1407)
+....|.||.+.|+||+|+|++++||||+.||+|+|||..+++....+..|...|.+++|+|++.+|++|+.|+.|++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcc
Q psy6522 275 LQTL------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 348 (1407)
Q Consensus 275 l~tg------~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~ 348 (1407)
+... .....+.+|...|.+++|+|++ ..|++++.|++|++||+.++.... .+..|...
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~t~s~D~~v~lwd~~~~~~~~------------~~~~h~~~ 198 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD----MQILTASGDGTCALWDVESGQLLQ------------SFHGHGAD 198 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEE------------EEECCSSC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCeEEE------------EEcCCCCC
Confidence 8643 3566778999999999999976 899999999999999998774332 23456788
Q ss_pred eEEEEECC--CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q psy6522 349 ILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 426 (1407)
Q Consensus 349 I~~vafSp--dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~ 426 (1407)
|.+++|+| ++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.|++|++||++.+...
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMR---SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999987 57899999999999999994 34556778899999999999999999999999999999999887643
Q ss_pred EeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCC
Q psy6522 427 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR 506 (1407)
Q Consensus 427 ~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~ 506 (1407)
.... ...+...+.+++|+|++.+|++++. |+.|+|||+.+++.+..+.+|.+.|++++|+| ++.
T Consensus 276 ~~~~--------------~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~ 339 (354)
T 2pbi_B 276 AIYS--------------KESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGT 339 (354)
T ss_dssp EEEC--------------CTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSS
T ss_pred EEEc--------------CCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCC
Confidence 3221 1123456889999999999999998 99999999999999999999999999999999 999
Q ss_pred EEEEEeCCCcEEEEE
Q psy6522 507 VLLSAGHDGLIIIWD 521 (1407)
Q Consensus 507 ~LaSgs~DG~V~IWD 521 (1407)
+|++|+.||+|+||+
T Consensus 340 ~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 AFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTSEEEEEC
T ss_pred EEEEEcCCCCEEecC
Confidence 999999999999996
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-37 Score=371.69 Aligned_cols=289 Identities=18% Similarity=0.295 Sum_probs=259.2
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeE
Q psy6522 239 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 239 l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~v 318 (1407)
...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++ .+|++|+.|++|++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~----~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG----KLLASCSADMTIKL 176 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS----SEEEEEETTSCCCE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC----CEEEEEeCCCeEEE
Confidence 34578999999999999999999999999999999999999999999999999999999976 89999999999999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEE
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 398 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIa 398 (1407)
||+.+.... ..+..|...|.+++|+|++.+|++|+.|+.|++||+. ....+..+.+|...|.++.
T Consensus 177 wd~~~~~~~------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~---~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 177 WDFQGFECI------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ---TGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EETTSSCEE------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEE
T ss_pred EeCCCCcee------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC---CCcEEEEEeCCCccEEEEE
Confidence 998765322 2334677899999999999999999999999999994 3456777889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC------------------
Q psy6522 399 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS------------------ 460 (1407)
Q Consensus 399 fSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd------------------ 460 (1407)
|++++.+|++|+.||+|++||+.++.+.... ..|...|.+++|+|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~----------------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATKECKAEL----------------REHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEE----------------CCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCceeeEe----------------cCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 9999999999999999999999987754422 346778999999996
Q ss_pred --CCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeec
Q psy6522 461 --DRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE 538 (1407)
Q Consensus 461 --g~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~ 538 (1407)
+.+|++++. |+.|++||+.++.++..+.+|...|.+++|+| ++.+|++|+.||+|+|||+.++ ..+..+.
T Consensus 306 ~~g~~l~sgs~-D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~--~~~~~~~---- 377 (410)
T 1vyh_C 306 KPGPFLLSGSR-DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNK--RCMKTLN---- 377 (410)
T ss_dssp --CCEEEEEET-TSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTS--CCCEEEE----
T ss_pred CCCCEEEEEeC-CCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--ceEEEEc----
Confidence 668888888 99999999999999999999999999999999 9999999999999999999888 6666665
Q ss_pred CCCCCceeEEEECCCCCEEEEEeCCCeEEEEEc
Q psy6522 539 GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 571 (1407)
Q Consensus 539 g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl 571 (1407)
.|...|++++|+|++.+|++|+.||.|+||++
T Consensus 378 -~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 378 -AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred -CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 46778999999999999999999999999986
No 17
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-36 Score=354.15 Aligned_cols=293 Identities=17% Similarity=0.281 Sum_probs=254.7
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCC-----CcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARD-----GKLLATLRGCSGEISDIAIDNRNILLAAGTV 266 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG-~~LaTGS~DG~V~IWDl~t-----g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~ 266 (1407)
.+.+..+|.||.+.|++++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|.+++|+|++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 456778899999999999999965 8999999999999999864 3457789999999999999999999999999
Q ss_pred CCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC
Q psy6522 267 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 267 DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~ 346 (1407)
|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+... . ...+..|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~D~~i~vwd~~~~-~------------~~~~~~h~ 148 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA----SMIISGSRDKTIKVWTIKGQ-C------------LATLLGHN 148 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----CEEEEEETTSCEEEEETTSC-E------------EEEECCCS
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-e------------EEEEeccC
Confidence 9999999999999999999999999999999976 89999999999999998643 1 12234677
Q ss_pred cceEEEEECCC------CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEc
Q psy6522 347 AHILCSSFSPG------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420 (1407)
Q Consensus 347 ~~I~~vafSpd------g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl 420 (1407)
..|.++.|+|. +..|++++.|+.|++||+. .......+.+|...|.+++|+|++.+|++|+.||+|+|||+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETT---TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC---cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 88999999985 4589999999999999994 34556677899999999999999999999999999999999
Q ss_pred cCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec--------CC
Q psy6522 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--------HT 492 (1407)
Q Consensus 421 ~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g--------H~ 492 (1407)
.+++...... ....|.+++|+|++.+|+++. +..|++|++..+..+..+.. |.
T Consensus 226 ~~~~~~~~~~-----------------~~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 226 AAKKAMYTLS-----------------AQDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp TTTEEEEEEE-----------------CCSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred CCCcEEEEec-----------------CCCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCeeeeccCccccccccCcC
Confidence 9887544321 234699999999999998876 56799999998887777653 45
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 493 ~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..+.+++|+| ++++|++|+.||.|+|||+.++
T Consensus 287 ~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSA-DGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECT-TSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECC-CCCEEEEeecCceEEEEEEeec
Confidence 6799999999 9999999999999999998764
No 18
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.2e-36 Score=390.87 Aligned_cols=398 Identities=14% Similarity=0.202 Sum_probs=320.8
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVW 273 (1407)
+.+.+.+.+|.+.|+|++|+|+|++||+|+.||.|+|||+.+++.+..+.+|.+.|++++|+|++++|++|+.||.|+||
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 274 Dl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
|+.+++.+..+.+|.+.|++++|+|++ .+|++++.||+|++|++.++.... ..+..|...|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vw~~~~~~~~~-----------~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTK----PYVLSGSDDLTVKLWNWENNWALE-----------QTFEGHEHFVMCVA 147 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS----SEEEEEETTSEEEEEEGGGTSEEE-----------EEEECCSSCEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCC----CEEEEEcCCCEEEEEECCCCceEE-----------EEEcCCCCcEEEEE
Confidence 999999999999999999999999977 899999999999999997652221 12335668899999
Q ss_pred ECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEee-cCCCcceEEEcC--CCCEEEEEeCCCeEEEEEccCCceEEee
Q psy6522 354 FSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 354 fSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~-h~~~V~sIafSp--dg~~LaSgs~DGtI~IWDl~t~~~~~~~ 429 (1407)
|+| ++..|++++.||.|++||+.... ....+.. +...|.+++|+| ++.+|++++.||.|++||+.++......
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 224 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 999 88999999999999999994332 2333333 448899999999 9999999999999999999887654322
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCC-EE
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 508 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~-~L 508 (1407)
..+...|.+++|+|++.+|++++. ||.|++||+.+++.+..+..|...|.+++|+| ++. ++
T Consensus 225 ----------------~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 286 (814)
T 3mkq_A 225 ----------------EGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP-TGRKNY 286 (814)
T ss_dssp ----------------ECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCSEEEEECCSSSSEEEEEECT-TCGGGE
T ss_pred ----------------cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEeecCCCcEEEEEEcc-CCCceE
Confidence 246678999999999999999998 99999999999999999999999999999999 665 34
Q ss_pred EEEeCCCcEEEEECCCCCccceeeee--------------------------------------eeecCCCCCceeEEEE
Q psy6522 509 LSAGHDGLIIIWDILSSKQRGYKWFH--------------------------------------NIVEGQGEGALFDGKW 550 (1407)
Q Consensus 509 aSgs~DG~V~IWDi~sgk~~~l~~~~--------------------------------------~~~~g~~~~~I~slaf 550 (1407)
++++.|+.+.+|++.... ....+. ......+...+.+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDE--PTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp EEEEETTEEEEEECSCCS--CCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred EEEEeCCCEEEEEcCCCC--ceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 555667789999986542 111110 0000123346889999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCcccc-ccCCceEecCCCcEEEec-CCCeeeEeeCCCCCCCCcCCCCcccCCCCccC
Q psy6522 551 SPDGTTCALTDSYGHLLVYGLGGFKRPQ-NIPRELFFHTDYRTLNRP-NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPY 628 (1407)
Q Consensus 551 SpDG~~LAsgs~DG~I~Iwdl~sg~~~~-~lp~~v~Fs~D~~~Lv~~-~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~~y 628 (1407)
+|+|++|++++ +|.+.+|++....... .-...+.|+||++.++.. ..+.+.+|+...+.. ..+....|
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~---------~~v~~~~~ 434 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT---------SWSVPMHS 434 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT---------TCCCCCSS
T ss_pred CCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc---------ceEEcCCc
Confidence 99999999998 8999999986544322 123478999999988744 455566886433211 11345567
Q ss_pred CCCC---ceEEeCC
Q psy6522 629 PPEV---QRLVPGR 639 (1407)
Q Consensus 629 ppd~---Q~Lv~GR 639 (1407)
+|++ ..|+.++
T Consensus 435 s~dg~~~~~l~~~~ 448 (814)
T 3mkq_A 435 AIDRLFSGALLGVK 448 (814)
T ss_dssp CCCEEECSSSEEEE
T ss_pred CccceecceEEEEe
Confidence 7887 3666553
No 19
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-37 Score=405.18 Aligned_cols=434 Identities=11% Similarity=0.051 Sum_probs=307.3
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 279 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~ 279 (1407)
..||.+.|+||+|+|++++||+|+.||.|+||+..+.+.+..+. |...|.+|+|+| +++|++++.|++|+|||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 45899999999999999999999999999999998887766654 888999999999 8899999999999999999999
Q ss_pred eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccc-cccCCCCcceEEEEECCC-
Q psy6522 280 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN-ERIRPGNAHILCSSFSPG- 357 (1407)
Q Consensus 280 ~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~-~~~~~h~~~I~~vafSpd- 357 (1407)
++..+. |.+.|++++|+|++ .+|++|+.||+|++||+.+..... .... ..... .....|...|.+++|+|+
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g----~~l~sgs~dg~V~lwd~~~~~~~~-~~i~-~~~~~~~~~~~h~~~V~sl~~sp~~ 163 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASL----DWMLIGLQNGSMIVYDIDRDQLSS-FKLD-NLQKSSFFPAARLSPIVSIQWNPRD 163 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTC----SEEEEEETTSCEEEEETTTTEEEE-EEEC-CHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred EEEEEc-CCCCEEEEEECCCC----CEEEEEcCCCcEEEEECCCCcccc-ceec-cccccccccccCCCCeEEEEEccCC
Confidence 988886 67899999999977 899999999999999998764321 1000 00000 233567889999999996
Q ss_pred CceEEEeeCCceEEEEeccCCCCCceeEEEeec------------------CCCcceEEEcCCCCEEEEEeCCCeEEEEE
Q psy6522 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------------------SDKVDSIQWSHSHLRFVSGSRDGTALIWY 419 (1407)
Q Consensus 358 g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h------------------~~~V~sIafSpdg~~LaSgs~DGtI~IWD 419 (1407)
+..|++|+.||.| +||+.. ...+..+..| ...|.+++|+|+|.+|++|+.||+|++||
T Consensus 164 ~~~l~~g~~dg~v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd 239 (902)
T 2oaj_A 164 IGTVLISYEYVTL-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD 239 (902)
T ss_dssp EEEEEEECSSCEE-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcE-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 5789999999999 999943 3334444433 57899999999999999999999999999
Q ss_pred ccCCceEEee-ec---cCc------------C------------CCC--Cccccc--------------c----------
Q psy6522 420 YKCSQWRFIR-LD---MNT------------C------------LPH--TKETSD--------------E---------- 445 (1407)
Q Consensus 420 l~t~~~~~~~-l~---~~~------------~------------~~~--~~~~~~--------------~---------- 445 (1407)
+.+++..... +. ... . .+. ...... .
T Consensus 240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~ 319 (902)
T 2oaj_A 240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT 319 (902)
T ss_dssp TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence 9888764421 10 000 0 000 000000 0
Q ss_pred -------------------ccccccEEEEEECC----------CCCEEEEEEecCCeEEEEECCCCceEEE---------
Q psy6522 446 -------------------TNKKIKVTMVAWDA----------SDRWVITAINFNFQIKIWDAFNGDLVQV--------- 487 (1407)
Q Consensus 446 -------------------~~~~~~VtslafSp----------dg~~Lasgs~~DG~I~IWDl~tg~~l~~--------- 487 (1407)
..+...|..+++.+ +...+++++. ||.|++||+.++.....
T Consensus 320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~-dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG-NGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET-TSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC-CCcEEEEECCCCCcccccccCCCccc
Confidence 01123344444433 2235666665 78899998876643321
Q ss_pred --------------------------------EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeee
Q psy6522 488 --------------------------------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN 535 (1407)
Q Consensus 488 --------------------------------l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~ 535 (1407)
+.+|...+.+++|+| ++++|+||+.||+|++||+.++.......+..
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 233444445555677 88999999999999999998873221111211
Q ss_pred ee----cCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc-----------------------------------
Q psy6522 536 IV----EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR----------------------------------- 576 (1407)
Q Consensus 536 ~~----~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~----------------------------------- 576 (1407)
.+ ...|...|++++|+|||++||+|+.||+|+||++.+++.
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 01 114567899999999999999999999999999987631
Q ss_pred ----------ccccC------CceEecCCCcEEEe-cCCCeeeEeeCCCCCCCC-----cCCCCcccCCCCccCC-----
Q psy6522 577 ----------PQNIP------RELFFHTDYRTLNR-PNGLFEPTYDEVTNLPPH-----LMPPPFLVDLNGTPYP----- 629 (1407)
Q Consensus 577 ----------~~~lp------~~v~Fs~D~~~Lv~-~~~~~~~v~Dv~T~~~~~-----~~p~pfl~d~~G~~yp----- 629 (1407)
+..+. ..+.|+||| .|+. ...+.+.+||+.+....+ .+.....--+....|+
T Consensus 558 ~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 558 PTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp CTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred CCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC
Confidence 22232 268899999 7774 455678899986653221 0100001115556788
Q ss_pred CCC---ceEEeCCCCCCCCCccccc
Q psy6522 630 PEV---QRLVPGRENADDTELLPDI 651 (1407)
Q Consensus 630 pd~---Q~Lv~GR~~sdn~~L~~~~ 651 (1407)
||+ ++|++|.. |..-.+|++
T Consensus 637 ~Dg~~~~~l~sgs~--D~tv~~wd~ 659 (902)
T 2oaj_A 637 DDGYSSILMVCGTD--MGEVITYKI 659 (902)
T ss_dssp TSSSEEEEEEEEET--TSEEEEEEE
T ss_pred CCCCcceEEEEEec--CCcEEEEEE
Confidence 885 89998844 445555654
No 20
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-36 Score=354.90 Aligned_cols=296 Identities=20% Similarity=0.341 Sum_probs=249.3
Q ss_pred ceeEEEEEcCCCCCEEEEEE-----cC-CCCEEEEEECCCeEEEEEcCC-------CcEEEEEeCCCCCeEEEEEcCCCC
Q psy6522 193 NLRQHYVNLGHLSAVFCVLF-----DK-LGEVIVTGADDLLIKLWRARD-------GKLLATLRGCSGEISDIAIDNRNI 259 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vaf-----Sp-dG~~LaTGS~DG~V~IWDl~t-------g~~l~tl~gH~~~ItsLafSpDg~ 259 (1407)
.+.+...|.||.+.|++++| ++ ++++||||+.|++|+|||+.+ +.+...+.+|...|++++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 899999999999999999975 346778999999999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccc
Q psy6522 260 LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 339 (1407)
Q Consensus 260 lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~ 339 (1407)
+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+...... . .
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~----~~l~s~~~d~~i~~wd~~~~~~~-~---------~ 155 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN----RQILSAGAEREIKLWNILGECKF-S---------S 155 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST----TEEEEEETTSCEEEEESSSCEEE-E---------C
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC----CEEEEEcCCCEEEEEeccCCcee-e---------e
Confidence 99999999999999999999999999999999999999976 89999999999999998633110 0 1
Q ss_pred cccCCCCcceEEEEECCCC----------ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE
Q psy6522 340 ERIRPGNAHILCSSFSPGG----------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409 (1407)
Q Consensus 340 ~~~~~h~~~I~~vafSpdg----------~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg 409 (1407)
.....|...|.+++|+|++ .+|++++.|+.|++||.. ......+.+|...|.+++|+|++.+|++|
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccceEEEECCCCCEEEEE
Confidence 1123566889999999987 789999999999999952 34456778999999999999999999999
Q ss_pred eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE--E
Q psy6522 410 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ--V 487 (1407)
Q Consensus 410 s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~--~ 487 (1407)
+.||.|+|||+........ ...+...|.+++|+|++.+|+++ . |+.|++||+.+++... .
T Consensus 232 s~dg~v~iwd~~~~~~~~~----------------~~~~~~~v~~v~~sp~~~~la~~-~-d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQR----------------EFDAGSTINQIAFNPKLQWVAVG-T-DQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp ETTCEEEEEESSCCSSCSE----------------EEECSSCEEEEEECSSSCEEEEE-E-SSCEEEEESSSCCSCSEEE
T ss_pred cCCCeEEEEECCCCcccce----------------eecCCCcEEEEEECCCCCEEEEE-C-CCCEEEEEeCCCCCCceEE
Confidence 9999999999853321100 01134469999999999887655 4 8889999998876543 4
Q ss_pred Ee-----------cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 488 LK-----------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 488 l~-----------gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+. +|...|.+++|+| ++.+|++|+.||.|++|++.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEcc
Confidence 43 6888999999999 9999999999999999998765
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=353.80 Aligned_cols=291 Identities=20% Similarity=0.312 Sum_probs=253.3
Q ss_pred EEEEEeCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEeCCCCce--EEEEeccCCceEEEEeccCCCCCceEEEEEe
Q psy6522 238 LLATLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAP--ISVLVGHQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 238 ~l~tl~gH~~~ItsLafSpD----g~lLaSgs~DGtIrVWDl~tg~~--v~~l~~H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
+...+.+|.+.|++++|+++ +.+|++|+.|++|+||++.++.. ...+.+|...|.+++|++++ .++++++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~----~~l~s~s 99 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL----PIAASSS 99 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS----SEEEEEE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC----CEEEEEe
Confidence 34567799999999999875 67999999999999999977653 45688999999999999976 8999999
Q ss_pred cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC
Q psy6522 312 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 391 (1407)
Q Consensus 312 ~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~ 391 (1407)
.|++|++||+.++...... ..+...+.+++|+|++.+|++|+.+|.|++|++. .......+..|.
T Consensus 100 ~D~~i~lWd~~~~~~~~~~------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~---~~~~~~~~~~~~ 164 (321)
T 3ow8_A 100 LDAHIRLWDLENGKQIKSI------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE---SGKKEYSLDTRG 164 (321)
T ss_dssp TTSEEEEEETTTTEEEEEE------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT---TCSEEEEEECSS
T ss_pred CCCcEEEEECCCCCEEEEE------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC---CCceeEEecCCC
Confidence 9999999999877433322 2344678899999999999999999999999994 344566778888
Q ss_pred CCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy6522 392 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 471 (1407)
Q Consensus 392 ~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D 471 (1407)
..|.+++|+|++++|++|+.||.|++||+.+++..... ..+...|.+++|+|++.+|++++. |
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~----------------~~h~~~v~~l~~spd~~~l~s~s~-d 227 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL----------------EGHAMPIRSLTFSPDSQLLVTASD-D 227 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------CCCSSCCCEEEECTTSCEEEEECT-T
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----------------cccCCceeEEEEcCCCCEEEEEcC-C
Confidence 99999999999999999999999999999988754322 246778999999999999999998 9
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEEC
Q psy6522 472 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 551 (1407)
Q Consensus 472 G~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafS 551 (1407)
+.|+|||+.+++++..+.+|...|.+++|+| ++.+|++++.||+|+|||+.++ .++..+. .+...|.+++|+
T Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~-----~h~~~v~~v~~s 299 (321)
T 3ow8_A 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTR--TCVHTFF-----DHQDQVWGVKYN 299 (321)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT--EEEEEEC-----CCSSCEEEEEEC
T ss_pred CeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC--EEEEEEc-----CCCCcEEEEEEC
Confidence 9999999999999999999999999999999 9999999999999999999988 7776665 467899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC
Q psy6522 552 PDGTTCALTDSYGHLLVYGLG 572 (1407)
Q Consensus 552 pDG~~LAsgs~DG~I~Iwdl~ 572 (1407)
|+|++|++++.||.|+|||+.
T Consensus 300 ~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 300 GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999963
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5e-36 Score=351.86 Aligned_cols=294 Identities=16% Similarity=0.217 Sum_probs=257.0
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc
Q psy6522 236 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315 (1407)
Q Consensus 236 g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt 315 (1407)
.+...++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|+.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d~~ 120 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG----NYVACGGLDNI 120 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS----SEEEEEETTCE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC----CEEEEEeCCCe
Confidence 34677899999999999999999999999999999999999999999999999999999999976 89999999999
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcc
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~ 395 (1407)
|++|++.+..... .....+..|...|.++.|++++. |++++.|+.|++||+. ....+..+.+|.+.|.
T Consensus 121 v~iw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~---~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 121 CSIYNLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE---TGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT---TTEEEEEECCCSSCEE
T ss_pred EEEEECccCCCcc--------eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC---CCcEEEEEcCCCCceE
Confidence 9999987653211 12223456778999999998875 8899999999999994 3456677889999999
Q ss_pred eEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy6522 396 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475 (1407)
Q Consensus 396 sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~ 475 (1407)
+++|+|++.+|++|+.||+|++||+.++...... ..|...|.+++|+|++.+|++++. ||.|+
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~----------------~~h~~~v~~v~~~p~~~~l~s~s~-d~~v~ 251 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF----------------TGHESDINAICFFPNGNAFATGSD-DATCR 251 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE----------------CCCSSCEEEEEECTTSSEEEEEET-TSCEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE----------------cCCcCCEEEEEEcCCCCEEEEEcC-CCcEE
Confidence 9999999999999999999999999987654322 347778999999999999999998 99999
Q ss_pred EEECCCCceEEEEec--CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC
Q psy6522 476 IWDAFNGDLVQVLKG--HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 553 (1407)
Q Consensus 476 IWDl~tg~~l~~l~g--H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD 553 (1407)
+||+.+++.+..+.. +...|++++|+| ++.+|++|+.||.|+|||+.++ ..+..+. .|.+.|.+++|+||
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~--~~~~~~~-----~h~~~v~~~~~s~d 323 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKA--DRAGVLA-----GHDNRVSCLGVTDD 323 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC--CEEEEEE-----CCSSCEEEEEECTT
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccC--cEeeEee-----cCCCcEEEEEEcCC
Confidence 999999988877753 335799999999 9999999999999999999887 5565554 46789999999999
Q ss_pred CCEEEEEeCCCeEEEEE
Q psy6522 554 GTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 554 G~~LAsgs~DG~I~Iwd 570 (1407)
|.+||+++.||.|+|||
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999999999996
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-35 Score=342.60 Aligned_cols=298 Identities=24% Similarity=0.407 Sum_probs=256.8
Q ss_pred CceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy6522 192 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIR 271 (1407)
Q Consensus 192 ~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIr 271 (1407)
..+.+..++.+|...|++++|+|+|++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 272 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 272 VWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.++.... .+..|...|.+
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~v~~ 154 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVKTGKCLK------------TLPAHSDPVSA 154 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCCEEE------------EECCCSSCEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCEEEE------------EecCCCCcEEE
Confidence 99999999999999999999999999976 899999999999999998764322 23346688999
Q ss_pred EEECCCCceEEEeeCCceEEEEeccCCCCCceeEEE-eecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q psy6522 352 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 430 (1407)
Q Consensus 352 vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l 430 (1407)
++|+|++.+|++++.||.|++||+... ..+..+ ..+...+.+++|+|++.+|++++.||.|++||+.+++......
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC---ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 999999999999999999999999432 333333 3466789999999999999999999999999999887554321
Q ss_pred ccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEE
Q psy6522 431 DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS 510 (1407)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaS 510 (1407)
.. ......+......+++.+|++++. ||.|++||+.+++++..+.+|...|.+++|+| ++.+|++
T Consensus 232 ~~-------------~~~~~~~~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s 296 (312)
T 4ery_A 232 GH-------------KNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIAS 296 (312)
T ss_dssp SS-------------CCSSSCCCEEEECSSSCEEEECCT-TSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEE
T ss_pred ec-------------CCceEEEEEEEEeCCCcEEEEECC-CCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEE
Confidence 10 001112223334467888888887 99999999999999999999999999999999 9999999
Q ss_pred Ee--CCCcEEEEECC
Q psy6522 511 AG--HDGLIIIWDIL 523 (1407)
Q Consensus 511 gs--~DG~V~IWDi~ 523 (1407)
++ .|++|+||+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 97 69999999864
No 24
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-35 Score=369.52 Aligned_cols=405 Identities=13% Similarity=0.116 Sum_probs=314.3
Q ss_pred eeeeccCCceEEEecCCCC------ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEcCCCcEEEEEe
Q psy6522 174 REYSGPLSRFLMISSHKYS------NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARDGKLLATLR 243 (1407)
Q Consensus 174 r~~tg~~~~~~~i~~~~~~------~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~D----G~V~IWDl~tg~~l~tl~ 243 (1407)
..++++.++.+.+|..... .......+.+|...|.+++|+|++++|++++.+ +.|.+|| +++.+..+.
T Consensus 80 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~ 157 (615)
T 1pgu_A 80 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS 157 (615)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC
T ss_pred EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee
Confidence 4556777888888876422 457778889999999999999999999999987 6888887 778899999
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCCceEEEEeccCC---ceEEEEeccC-CCCCceEEEEEecCCceeE
Q psy6522 244 GCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPL-EVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 244 gH~~~ItsLafSpDg~-lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~---~VtsLafspd-~~~~~~~LaSgs~DGtI~v 318 (1407)
+|...|++++|+|++. +|++++.|+.|++||+.+++.+..+.+|.. .|++++|+|+ + .+|++++.||.|++
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG----EFVITVGSDRKISC 233 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC----CEEEEEETTCCEEE
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC----CEEEEEeCCCeEEE
Confidence 9999999999999998 899999999999999999999999999999 9999999997 5 89999999999999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec----CCCc
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH----SDKV 394 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h----~~~V 394 (1407)
||+.++........ ....|...|.+++|+ ++.+|++++.|+.|++||+. ....+..+..+ ...+
T Consensus 234 wd~~~~~~~~~~~~--------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~---~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 234 FDGKSGEFLKYIED--------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT---TSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EETTTCCEEEECCB--------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT---TTEEEEEEECCTTCGGGCE
T ss_pred EECCCCCEeEEecc--------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC---CCcEEEEEcCCCCcccCce
Confidence 99987643322200 001566889999999 99999999999999999994 33445555555 3567
Q ss_pred ceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCC-------------CCcc-----ccccccc--------
Q psy6522 395 DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP-------------HTKE-----TSDETNK-------- 448 (1407)
Q Consensus 395 ~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~-------------~~~~-----~~~~~~~-------- 448 (1407)
.++.|. ++.+|++++.||.|++||+.+++............. .... ... ..+
T Consensus 302 ~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~-~~~~~~v~~~~ 379 (615)
T 1pgu_A 302 VGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH-QDHSNLIVSLD 379 (615)
T ss_dssp EEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE-CCCCSCEEEEE
T ss_pred eEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc-CcccCceEEEE
Confidence 788886 888999999999999999987554332211000000 0000 000 112
Q ss_pred ------------------------------------------------------------------cccEEEEEECCCCC
Q psy6522 449 ------------------------------------------------------------------KIKVTMVAWDASDR 462 (1407)
Q Consensus 449 ------------------------------------------------------------------~~~VtslafSpdg~ 462 (1407)
...+.+++|+ +.
T Consensus 380 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 457 (615)
T 1pgu_A 380 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QN 457 (615)
T ss_dssp CCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SS
T ss_pred ECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CC
Confidence 2334444444 44
Q ss_pred EEEEEEecCCeEEEEECCCCceE-EEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCC
Q psy6522 463 WVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQG 541 (1407)
Q Consensus 463 ~Lasgs~~DG~I~IWDl~tg~~l-~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~ 541 (1407)
+|++++..|+.|++||+.+++.. ..+.+|...|++++|+| ++++|++++.||.|+|||+.++ ..+..+. +.|
T Consensus 458 ~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~----~~h 530 (615)
T 1pgu_A 458 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSR--EVKTSRW----AFR 530 (615)
T ss_dssp EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTT--EEEECCS----CCC
T ss_pred EEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCC--cceeEee----cCC
Confidence 55544422677888887776655 66778999999999999 9999999999999999999988 5555443 326
Q ss_pred CCceeEEEECC----------CCCEEEEEeCCCeEEEEEcCCC-ccccccCC------ceEecCCCcEEE-ecCCCeeeE
Q psy6522 542 EGALFDGKWSP----------DGTTCALTDSYGHLLVYGLGGF-KRPQNIPR------ELFFHTDYRTLN-RPNGLFEPT 603 (1407)
Q Consensus 542 ~~~I~slafSp----------DG~~LAsgs~DG~I~Iwdl~sg-~~~~~lp~------~v~Fs~D~~~Lv-~~~~~~~~v 603 (1407)
...|++++|+| ++++||+++.||.|++|++.++ +.+..+.. .+.|++|++ |+ ....+.+.+
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 78999999999 9999999999999999999998 56655542 689999999 76 445666779
Q ss_pred eeCCC
Q psy6522 604 YDEVT 608 (1407)
Q Consensus 604 ~Dv~T 608 (1407)
||+.+
T Consensus 610 w~~~~ 614 (615)
T 1pgu_A 610 WNVVL 614 (615)
T ss_dssp EEEC-
T ss_pred Eeeec
Confidence 99764
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=373.44 Aligned_cols=344 Identities=11% Similarity=0.230 Sum_probs=278.0
Q ss_pred CCCEEEEEEcCCCC-EEEEE----------ECCCeEEEEEcCCCc---EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q psy6522 204 LSAVFCVLFDKLGE-VIVTG----------ADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNILLAAGTVDKT 269 (1407)
Q Consensus 204 ~~~V~~vafSpdG~-~LaTG----------S~DG~V~IWDl~tg~---~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGt 269 (1407)
...|.+++|+|+|+ +|++| +.|+.|+|||+.++. .+..+ .|...|++++|+|++.+|++|+.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 35688999999987 99999 889999999999875 44444 58999999999999999999999999
Q ss_pred EEEEeCCC----CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 270 IRIWNLQT----LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 270 IrVWDl~t----g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
|+||++.+ ...+..+.+|...|++++|+|++ +.+|++++.||.|++||+.......... ..........|
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~~~~~~~ 164 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ---DNVLASGGNNGEIFIWDMNKCTESPSNY---TPLTPGQSMSS 164 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS---TTBEEEECSSSCEEBCBTTTTSSCTTTC---CCBCCCCSCCS
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCC---CCEEEEEcCCCeEEEEECCCCccccccc---cccccccccCC
Confidence 99999987 45788889999999999999962 3899999999999999998764111000 00011223456
Q ss_pred CcceEEEEECCC-CceEEEeeCCceEEEEeccCCCCCceeEEEeec------CCCcceEEEcCCC-CEEEEEeCCC---e
Q psy6522 346 NAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------SDKVDSIQWSHSH-LRFVSGSRDG---T 414 (1407)
Q Consensus 346 ~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h------~~~V~sIafSpdg-~~LaSgs~DG---t 414 (1407)
...|.+++|+|+ +.+|++++.|+.|++||+.. ...+..+..| ...|.+++|+|++ .+|++++.|+ .
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 788999999999 78999999999999999943 3445555555 7889999999997 6899999999 9
Q ss_pred EEEEEccCCceEEeeeccCcCCCCCccccccc-cccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCCceEEEEecCC
Q psy6522 415 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 415 I~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~VtslafSp-dg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
|++||+.++... ..... .|...|.+++|+| ++.+|++++. ||.|++||+.+++++..+.+|.
T Consensus 242 i~~~d~~~~~~~---------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 242 ILIWDLRNANTP---------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp CCEEETTSTTSC---------------SBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEEEEEECSS
T ss_pred EEEEeCCCCCCC---------------cEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccceeecCCC
Confidence 999999875311 11122 5778999999999 8999999998 9999999999999999999999
Q ss_pred CCeEEEEEecCCC-CEEEEEeCCCcEEEEECCCCCccceee-------------eee---------------eecCCCCC
Q psy6522 493 NEVFVLESHPFDS-RVLLSAGHDGLIIIWDILSSKQRGYKW-------------FHN---------------IVEGQGEG 543 (1407)
Q Consensus 493 ~~V~sLafsP~dg-~~LaSgs~DG~V~IWDi~sgk~~~l~~-------------~~~---------------~~~g~~~~ 543 (1407)
..|++++|+| ++ .+|++++.||.|+|||+.+........ +.. .....+..
T Consensus 306 ~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 306 NWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 9999999999 76 899999999999999998773211110 000 00001345
Q ss_pred ceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 544 ALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 544 ~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
.+.+++|+|||++||+++.||.|+||++.+.
T Consensus 385 ~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 6778999999999999999999999998764
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-36 Score=347.96 Aligned_cols=323 Identities=12% Similarity=0.164 Sum_probs=274.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc---
Q psy6522 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--- 279 (1407)
Q Consensus 203 H~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~--- 279 (1407)
|...|.+++|+|+|++++++..++.+.+|............+|...|++++|+|++++|++++ ||.|+||++.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456899999999999999998888777776655555555568999999999999999999999 9999999998765
Q ss_pred eEEEEe--ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC
Q psy6522 280 PISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357 (1407)
Q Consensus 280 ~v~~l~--~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd 357 (1407)
.+..+. .|...|.+++|+|++ .+|++++.||.|++||+..+.... ...+..|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPRI----------KAELTSSAPACYALAISPD 152 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS----SEEEEEESSSEEEEEECCCC--EE----------EEEEECSSSCEEEEEECTT
T ss_pred eeecccccCCCCcEEEEEEcCCC----CEEEEEcCCCcEEEEECCCCCcce----------eeecccCCCceEEEEECCC
Confidence 334444 789999999999976 899999999999999998763211 1123345678999999999
Q ss_pred CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCC
Q psy6522 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437 (1407)
Q Consensus 358 g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~ 437 (1407)
+.+|++++.||.|++||+. ....+..+..|...|.+++|+|++.+|++++.||.|++||+.+++.....
T Consensus 153 ~~~l~~~~~dg~v~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-------- 221 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLH---NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------- 221 (337)
T ss_dssp SSEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred CCEEEEEeCCCcEEEEeCC---CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee--------
Confidence 9999999999999999994 34556677889999999999999999999999999999999987754421
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q psy6522 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI 517 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V 517 (1407)
.+...+.+++|+|++.+|++++. ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|
T Consensus 222 ---------~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 289 (337)
T 1gxr_A 222 ---------DFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLL 289 (337)
T ss_dssp ---------ECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred ---------cCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcE
Confidence 24567899999999999999998 99999999988875 46788999999999999 99999999999999
Q ss_pred EEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEc
Q psy6522 518 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 571 (1407)
Q Consensus 518 ~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl 571 (1407)
++||+.++ ..+... .+...|.+++|+|++++|++++.||.|++|++
T Consensus 290 ~~~~~~~~--~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 290 NAWRTPYG--ASIFQS------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTTC--CEEEEE------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCC--eEEEEe------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999988 444332 25678999999999999999999999999996
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.2e-36 Score=344.91 Aligned_cols=294 Identities=20% Similarity=0.285 Sum_probs=252.0
Q ss_pred cEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 237 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 237 ~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
+...+|.+|.+.|++|+|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++ ++|++|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~s~d~~i 79 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK----NWIIVGSDDFRI 79 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG----TEEEEEETTSEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC----CEEEEECCCCEE
Confidence 4567899999999999999999999999999999999999999999999999999999999976 899999999999
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
++||+.++.... .+..|...|.+++|+|++.+|++|+.|+.|++||+... ......+.+|...|.+
T Consensus 80 ~vwd~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 80 RVFNYNTGEKVV------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMC 145 (304)
T ss_dssp EEEETTTCCEEE------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEEEEEECCCCSCEEE
T ss_pred EEEECCCCcEEE------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cchhhhhcccCCcEEE
Confidence 999998774332 23457789999999999999999999999999999532 2334567889999999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC--CCCEEEEEEecCCe
Q psy6522 397 IQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--SDRWVITAINFNFQ 473 (1407)
Q Consensus 397 IafSp-dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp--dg~~Lasgs~~DG~ 473 (1407)
++|+| ++.+|++|+.||+|++||+......... ...+...+..+.|++ ++.+|++++. |+.
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~~ 209 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---------------TTGQERGVNYVDYYPLPDKPYMITASD-DLT 209 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE---------------ECCCTTCEEEEEECCSTTCCEEEEEET-TSE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcccee---------------ccCCcCcEEEEEEEEcCCCCEEEEEcC-CCe
Confidence 99999 5789999999999999999765432211 123456788888876 7789999998 999
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC
Q psy6522 474 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 553 (1407)
Q Consensus 474 I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD 553 (1407)
|+|||+.+++++..+.+|...|.+++|+| ++.+|++|+.||+|+|||+.++ +.+..+. .+...+.+++|+|+
T Consensus 210 i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~-----~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTY--KVEKTLN-----VGLERSWCIATHPT 281 (304)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTC--CEEEEEC-----CSSSSEEEEEECTT
T ss_pred EEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCC--ceeeecc-----CCCccEEEEEECCC
Confidence 99999999999999999999999999999 9999999999999999999988 6666654 45678999999998
Q ss_pred CC--EEEEEeCCCeEEEEEcCC
Q psy6522 554 GT--TCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 554 G~--~LAsgs~DG~I~Iwdl~s 573 (1407)
+. +||++.. ..+.+|++..
T Consensus 282 ~~~~~~asg~~-~g~~~~~~~~ 302 (304)
T 2ynn_A 282 GRKNYIASGFD-NGFTVLSLGN 302 (304)
T ss_dssp CGGGCEEEEET-TEEEEEECC-
T ss_pred CCceEEEEecC-CceEEEEecc
Confidence 85 4666655 5577887765
No 28
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.3e-35 Score=341.19 Aligned_cols=298 Identities=21% Similarity=0.324 Sum_probs=255.4
Q ss_pred CCCceeEEEEEcCCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEcCCCc-----EEEEEeCCCCCeEEEEEcCCCCEEEE
Q psy6522 190 KYSNLRQHYVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGK-----LLATLRGCSGEISDIAIDNRNILLAA 263 (1407)
Q Consensus 190 ~~~~~~~~~~L~GH~~~V~~vafSpd-G~~LaTGS~DG~V~IWDl~tg~-----~l~tl~gH~~~ItsLafSpDg~lLaS 263 (1407)
....+.+..+|.||.+.|+||+|+|+ +++||||+.||+|+|||+.+.+ +..++.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 34567888899999999999999998 6899999999999999987653 56788999999999999999999999
Q ss_pred EECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccC
Q psy6522 264 GTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343 (1407)
Q Consensus 264 gs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~ 343 (1407)
|+.|+.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+...... .....
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~s~d~~~~~~d~~~~~~~-----------~~~~~ 168 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN----RQIVSGSRDKTIKLWNTLGVCKY-----------TVQDE 168 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEE-----------EECSS
T ss_pred EcccccceEEeecccceeeeecCCCCceeEEEEeecC----ccceeecCCCeEEEEEeCCCceE-----------EEEec
Confidence 9999999999999999988888999999999999876 89999999999999998654211 12234
Q ss_pred CCCcceEEEEECCCC--ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEcc
Q psy6522 344 PGNAHILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 344 ~h~~~I~~vafSpdg--~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~ 421 (1407)
.|...+.+++|++++ .++++++.|+.|++||+. ....+..+.+|.+.|.+|+|+|++.+|++|+.||.|++||+.
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA---NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECC---CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 566889999998865 578899999999999993 445667788999999999999999999999999999999999
Q ss_pred CCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe---------cCC
Q psy6522 422 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK---------GHT 492 (1407)
Q Consensus 422 t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~---------gH~ 492 (1407)
+....... .+...|.+++|+|++.+++ ++. |+.|+|||+.++.++..+. +|.
T Consensus 246 ~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~-~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~ 306 (340)
T 4aow_A 246 EGKHLYTL-----------------DGGDIINALCFSPNRYWLC-AAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEP 306 (340)
T ss_dssp TTEEEEEE-----------------ECSSCEEEEEECSSSSEEE-EEE-TTEEEEEETTTTEEEEEECCC-------CCC
T ss_pred cCceeeee-----------------cCCceEEeeecCCCCceee-ccC-CCEEEEEECCCCeEEEeccccceeeeccCCC
Confidence 87754432 1345789999999876654 555 9999999999887776654 688
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 493 ~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..|++++|+| ++++|++|+.||.|+|||+.+|
T Consensus 307 ~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 307 PQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCEEEEEECT-TSSEEEEEETTSCEEEEEEEC-
T ss_pred CCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCc
Confidence 8999999999 9999999999999999999987
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=351.32 Aligned_cols=316 Identities=20% Similarity=0.260 Sum_probs=254.3
Q ss_pred CcEEEEEeCCCC-CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEE---EEeccCCceEEEEeccCCCCCceEEEEEe
Q psy6522 236 GKLLATLRGCSG-EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 236 g~~l~tl~gH~~-~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~---~l~~H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
..++.++.+|.. .|.+|+|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++ .+|++++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----~~l~s~s 80 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----NYLASAS 80 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS----SEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC----CEEEEEE
Confidence 356788999988 99999999999999999999999999998876432 235899999999999976 8999999
Q ss_pred cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC
Q psy6522 312 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 391 (1407)
Q Consensus 312 ~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~ 391 (1407)
.|++|++|++...... ....+..|...|.+++|+|++.+|++|+.|+.|++||+........+..+.+|.
T Consensus 81 ~D~~v~iw~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp TTSCEEEEEECCC-EE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CCCcEEEEEccCCCeE----------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence 9999999998765211 122345678899999999999999999999999999996555555667788999
Q ss_pred CCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy6522 392 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 471 (1407)
Q Consensus 392 ~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D 471 (1407)
..|.+++|+|++.+|++|+.|++|++||+..+.+.... ...+|...|.+++|+|++++|++++. |
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------~~~~h~~~v~~l~~sp~g~~l~s~s~-D 215 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA--------------TLEGHESTVWSLAFDPSGQRLASCSD-D 215 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE--------------EECCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------EecCCCCceEEEEECCCCCEEEEEeC-C
Confidence 99999999999999999999999999999877543211 12357789999999999999999998 9
Q ss_pred CeEEEEECCC---------------CceEEEEec-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccc--eeee
Q psy6522 472 FQIKIWDAFN---------------GDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG--YKWF 533 (1407)
Q Consensus 472 G~I~IWDl~t---------------g~~l~~l~g-H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~--l~~~ 533 (1407)
+.|+|||... ..++..+.+ |...|++++|+| ++..|++++.|+.|++|++....... ...+
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 9999999632 134556665 889999999999 89999999999999999987652111 1111
Q ss_pred eeeecCCCCCceeEEEECCCC-CEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 534 HNIVEGQGEGALFDGKWSPDG-TTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 534 ~~~~~g~~~~~I~slafSpDG-~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
.......|...|++++|+|++ .+||+++.||.|+||++.+++.+...+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 111223467899999999998 599999999999999999988765443
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-36 Score=363.51 Aligned_cols=318 Identities=17% Similarity=0.224 Sum_probs=265.5
Q ss_pred eEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceE
Q psy6522 227 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNY 306 (1407)
Q Consensus 227 ~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~ 306 (1407)
.+.+|+..+..+..++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+..|...|.+++|+|++ .+
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g----~~ 122 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG----QS 122 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS----SE
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC----CE
Confidence 34456777778889999999999999999999999999999999999999999999999999999999999977 89
Q ss_pred EEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC-CceEEEeeCCceEEEEeccCCCCCceeE
Q psy6522 307 LASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGIL 385 (1407)
Q Consensus 307 LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~ 385 (1407)
|++|+.|+.|++|++....... ........+.+|...+.++.|+|+ +..|++|+.|+.|++||+... ..+.
T Consensus 123 las~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~---~~~~ 194 (380)
T 3iz6_a 123 VACGGLDSACSIFNLSSQADRD-----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG---QRIS 194 (380)
T ss_dssp EEECCSSSCCEEEECCCCSSCC-----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---CEEE
T ss_pred EEEeeCCCcEEEEECCCCcccc-----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---cEEE
Confidence 9999999999999987642111 111223345678889999999997 457999999999999999432 3333
Q ss_pred EE-----eecCCCcceEEEcC-CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC
Q psy6522 386 EV-----EEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA 459 (1407)
Q Consensus 386 ~l-----~~h~~~V~sIafSp-dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp 459 (1407)
.+ .+|...|.+++|++ ++.+|++|+.||+|++||++.... ......+|...|.+++|+|
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---------------~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---------------AVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---------------CCEEECCCSSCCCEEEECT
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---------------ceEEECCcCCCeEEEEEec
Confidence 33 57889999999987 788999999999999999974321 1112245788999999999
Q ss_pred CCCEEEEEEecCCeEEEEECCCCceEEEEecCCC-------CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceee
Q psy6522 460 SDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 532 (1407)
Q Consensus 460 dg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~-------~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~ 532 (1407)
++.+|++++. ||.|+|||+.+++++..+..+.. .|++++|+| ++.+|++|+.||.|+|||+.++ ..+..
T Consensus 260 ~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~--~~~~~ 335 (380)
T 3iz6_a 260 DGQRFGTGSD-DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLA--EMVLN 335 (380)
T ss_dssp TSSEEEEECS-SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTC--CEEEE
T ss_pred CCCeEEEEcC-CCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCC--ceEEE
Confidence 9999999998 99999999999999988876533 489999999 9999999999999999999887 55554
Q ss_pred eeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 533 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 533 ~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
+... ...|.+.|.+++|+|||.+|++|+.||.|+||++...+.
T Consensus 336 ~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 336 LGTL-QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ECCS-CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred Eecc-cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 4322 234678999999999999999999999999999987653
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.3e-36 Score=358.09 Aligned_cols=324 Identities=16% Similarity=0.135 Sum_probs=236.3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC------CCeEEEEeCCCCce--
Q psy6522 209 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV------DKTIRIWNLQTLAP-- 280 (1407)
Q Consensus 209 ~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~------DGtIrVWDl~tg~~-- 280 (1407)
.+.+.+++.++. ++.+.....|++.... ..+|...|++++|||||++||+|+. |+.|++|+..++.+
T Consensus 10 g~d~g~~~~~~~-~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLYFQ-SNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceEEe-cCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 455666665544 4456788999975433 3579999999999999999999997 78899999877653
Q ss_pred --EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 281 --ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 281 --v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
......|...|++++|+|++ .+++++.||+|++||+.++....... .....|...|.+++|+|++
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~-----~~l~~s~dg~v~lWd~~~~~~~~~~~--------~~~~~h~~~V~~v~~spdg 151 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEK-----GILVASDSGAVELWEILEKESLLVNK--------FAKYEHDDIVKTLSVFSDG 151 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTT-----EEEEEETTSCEEEC--------CCCC--------EEECCCSSCEEEEEECSSS
T ss_pred eEecccCCCCCCEEEEEEcCCC-----CEEEEECCCEEEEeeccccceeEEEe--------eccCCCCCCEEEEEECCCC
Confidence 33455788999999999974 56678899999999998764322211 1233677899999999999
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~ 437 (1407)
++|++|+.|+.|++||+. ....+..+.+|...|.+++|++++. +|++++.||+|++||+++++....
T Consensus 152 ~~l~sgs~dg~v~iwd~~---~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--------- 219 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLS---QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--------- 219 (357)
T ss_dssp SEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---------
T ss_pred CEEEEEeCCCeEEEEECC---CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---------
Confidence 999999999999999993 4566777889999999999999875 789999999999999987763221
Q ss_pred CCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCc
Q psy6522 438 HTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 516 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~VtslafSpdg-~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~ 516 (1407)
.....+...+.+++|+|++ .+|++++. |+.|++||+.+++++..+.+|...|++++|+|..+.+|++|+.||+
T Consensus 220 -----~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 220 -----IDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp -----CCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred -----eeeccccccccchhhhhcccceEEEeec-ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence 1123456779999999986 45666666 9999999999999999999999999999999944578999999999
Q ss_pred EEEEECCCCCccceeeeeeeecCCCCCceeEEEECC-CCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 517 IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 517 V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp-DG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
|+|||+.++ +.+..+ .|.+.|++++|+| |+.+||+++.||.|++|++.+...
T Consensus 294 i~iwd~~~~--~~~~~~------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 294 VAVLDADFS--EVFRDL------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEECTTSC--EEEEEC------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEEECCCC--cEeEEC------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 999999988 554433 3678999999998 899999999999999999976543
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=347.75 Aligned_cols=308 Identities=21% Similarity=0.308 Sum_probs=239.6
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC--cEEEEE-eC-CCCCeEEEEEcCCCCEEEEEECCC
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATL-RG-CSGEISDIAIDNRNILLAAGTVDK 268 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg--~~l~tl-~g-H~~~ItsLafSpDg~lLaSgs~DG 268 (1407)
.+++...|.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |...|.+|+|+|++++|++|+.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 35677889999999999999987 9999999999999999875 456666 44 999999999999999999999999
Q ss_pred eEEEEeCCC-------CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccc
Q psy6522 269 TIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 341 (1407)
Q Consensus 269 tIrVWDl~t-------g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~ 341 (1407)
+|+||++.. ...+..+.+|...|.+++|+|++ .+|++++.|++|++||+...... ......
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g----~~las~s~D~~v~iwd~~~~~~~--------~~~~~~ 148 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG----YYLATCSRDKSVWIWETDESGEE--------YECISV 148 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS----CEEEEEETTSCEEEEECCTTCCC--------CEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC----CEEEEEeCCCEEEEEeccCCCCC--------eEEEEE
Confidence 999999853 45677889999999999999976 89999999999999998543111 011223
Q ss_pred cCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC--CCEEEEEeCCCeEEEEE
Q psy6522 342 IRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS--HLRFVSGSRDGTALIWY 419 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd--g~~LaSgs~DGtI~IWD 419 (1407)
+..|...|.+++|+|++.+|++|+.|+.|++|++.. .....+..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||
T Consensus 149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 456778999999999999999999999999999843 223456778899999999999998 67899999999999999
Q ss_pred ccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--eEEE-EecCCC-Ce
Q psy6522 420 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--LVQV-LKGHTN-EV 495 (1407)
Q Consensus 420 l~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~--~l~~-l~gH~~-~V 495 (1407)
+..+..... ............|...|.+++|++++ +|++++. ||.|+|||..+++ .+.. +.+|.. .|
T Consensus 228 ~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 228 YMGDDEDDQ-------QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA-DGVLAVYEEVDGEWKVFAKRALCHGVYEI 298 (330)
T ss_dssp EEEECTTSC-------EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET-TSCEEEEEEETTEEEEEEEESCTTTTSCE
T ss_pred ecCCCcccc-------ceeEEeeecccccccceEEEEEcCCC-EEEEEeC-CCEEEEEEcCCCceEEEeccccccccceE
Confidence 875420000 00000000112367889999999665 7888887 9999999998774 3333 367887 89
Q ss_pred EEEEEecC-CCCEEEEEeCCCcEEEEECCC
Q psy6522 496 FVLESHPF-DSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 496 ~sLafsP~-dg~~LaSgs~DG~V~IWDi~s 524 (1407)
.+++|+|. ++.+|++|+.||+|+|||+..
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999995 578999999999999999864
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-35 Score=380.24 Aligned_cols=409 Identities=17% Similarity=0.169 Sum_probs=328.7
Q ss_pred eeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEE
Q psy6522 174 REYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIA 253 (1407)
Q Consensus 174 r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLa 253 (1407)
..+++..++.+.+|.. ........+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|.+.|++++
T Consensus 27 ~la~~~~~g~v~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEETTSEEEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEeCCCEEEEEEC--CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 3445666778888864 34567788899999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCC-ceEEEEeccCCceEEEEecc-CCCCCceEEEEEecCCceeEEeeccccccceee
Q psy6522 254 IDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGVNFCP-LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331 (1407)
Q Consensus 254 fSpDg~lLaSgs~DGtIrVWDl~tg-~~v~~l~~H~~~VtsLafsp-d~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~ 331 (1407)
|+|++++|++|+.||.|+|||+.++ .....+.+|...|.+++|+| ++ ..|++++.||+|++||+..+.......
T Consensus 105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~v~vwd~~~~~~~~~~~ 180 (814)
T 3mkq_A 105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP----STFASGCLDRTVKVWSLGQSTPNFTLT 180 (814)
T ss_dssp ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE----EEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCcceeEEe
Confidence 9999999999999999999999887 67788889999999999999 54 899999999999999987664322221
Q ss_pred eccccccccccCCCCcceEEEEECC--CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE
Q psy6522 332 FHEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409 (1407)
Q Consensus 332 ~~~~~~~~~~~~~h~~~I~~vafSp--dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg 409 (1407)
..+...+.+++|+| ++.+|++++.||.|++||+. ....+..+.+|...|.+++|+|++.+|+++
T Consensus 181 -----------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 181 -----------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (814)
T ss_dssp -----------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT---TTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred -----------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC---CCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 12336789999999 99999999999999999984 345577788899999999999999999999
Q ss_pred eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEE-EEEEecCCeEEEEECCCCceEE--
Q psy6522 410 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV-ITAINFNFQIKIWDAFNGDLVQ-- 486 (1407)
Q Consensus 410 s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L-asgs~~DG~I~IWDl~tg~~l~-- 486 (1407)
+.||.|++||+.++...... ..+...+.+++|+|++..+ ++++. ++.+.+|++..+....
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 309 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTL----------------NVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSL 309 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEE----------------CCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEE
T ss_pred eCCCeEEEEECCCCcEEEEe----------------ecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEE
Confidence 99999999999987654422 2355689999999999753 44455 7889999876432211
Q ss_pred -----------------------------------------EEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 487 -----------------------------------------VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 487 -----------------------------------------~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.+..|...+.+++|+| ++++|++++ ||.+.||++...
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 310 DPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp CSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTT
T ss_pred CCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccc
Confidence 1123445688999999 999999998 899999998644
Q ss_pred CccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccCCceEecCCC----cEEEecCCCee
Q psy6522 526 KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDY----RTLNRPNGLFE 601 (1407)
Q Consensus 526 k~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp~~v~Fs~D~----~~Lv~~~~~~~ 601 (1407)
... +.+.+.+++|+|||++||+++.+|.|.+|+.-.+.. .....+.|++|+ ..+.....+.+
T Consensus 388 --~~~----------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~--~~v~~~~~s~dg~~~~~l~~~~~d~~v 453 (814)
T 3mkq_A 388 --RNK----------AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVT--SWSVPMHSAIDRLFSGALLGVKSDGFV 453 (814)
T ss_dssp --EEE----------EEEECSEEEECTTSSCEEEECTTCCEEEEETTEECT--TCCCCCSSCCCEEECSSSEEEEETTEE
T ss_pred --ccc----------CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCcc--ceEEcCCcCccceecceEEEEecCCEE
Confidence 111 135688999999999999999999999997543322 122356788997 44445666777
Q ss_pred eEeeCCCCCCCCcCCCCcccCCCCccCCCCCceEEeCC
Q psy6522 602 PTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRLVPGR 639 (1407)
Q Consensus 602 ~v~Dv~T~~~~~~~p~pfl~d~~G~~yppd~Q~Lv~GR 639 (1407)
.+||..++.....+..+.. ...|+|++++|+.+.
T Consensus 454 ~~~d~~~~~~~~~~~~~~~----~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 454 YFFDWDNGTLVRRIDVNAK----DVIWSDNGELVMIVN 487 (814)
T ss_dssp EEECTTTCCEEEEESSCEE----EEEECTTSSEEEEEE
T ss_pred EEEECCcCcEEEEEecCCC----EEEEcCCCCEEEEEE
Confidence 7999988765544443321 678999999999873
No 34
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-35 Score=339.16 Aligned_cols=304 Identities=17% Similarity=0.271 Sum_probs=266.6
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q psy6522 195 RQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 274 (1407)
Q Consensus 195 ~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWD 274 (1407)
.....|.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecC-----CceeEEeeccccccceeeeccccccccccCCCCc--
Q psy6522 275 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA-- 347 (1407)
Q Consensus 275 l~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D-----GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~-- 347 (1407)
+.+++.+..+. |...|.+++|+|++ .+|++++.+ |.|.+||+.............. ........+..
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~----~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCG----NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-EPIHKIITHEGLD 176 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTS----SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-SCSEEEECCTTCC
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCC----CEEEEecCCccCCCCEEEEEEecCCccceeeccccc-ceeeeccCCcCcc
Confidence 99999998887 88899999999976 899999998 9999999987754333222111 11122223334
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEE
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 427 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~ 427 (1407)
.+.+++|+|++.+|++++.||.|++||+... ...+..+..|...|.+++|+|++.+|++++.||.|++||+.++....
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 254 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK 254 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence 8999999999999999999999999999432 45566778899999999999999999999999999999999877554
Q ss_pred eeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--------------eEEEEECCCCceEEEEecCCC
Q psy6522 428 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--------------QIKIWDAFNGDLVQVLKGHTN 493 (1407)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG--------------~I~IWDl~tg~~l~~l~gH~~ 493 (1407)
... +...+..++|+|++.++++++. ++ .|++||+.+++.+..+.+|..
T Consensus 255 ~~~-----------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 255 KYE-----------------TDCPLNTAVITPLKEFIILGGG-QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp EEE-----------------CSSCEEEEEECSSSSEEEEEEC-CC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred eec-----------------CCCCceeEEecCCCceEEEeec-CCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence 321 4567899999999999999998 66 899999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.|.+++|+| ++++|++++.||.|+||++..+
T Consensus 317 ~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 317 PLNTVAISP-QGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CEEEEEECT-TSSEEEEEETTSEEEEEEECHH
T ss_pred cEEEEEECC-CCCEEEEEcCCCeEEEEECccc
Confidence 999999999 9999999999999999999876
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-35 Score=356.15 Aligned_cols=299 Identities=25% Similarity=0.378 Sum_probs=247.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC------------------CeEEEEEcCCCCEEE
Q psy6522 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG------------------EISDIAIDNRNILLA 262 (1407)
Q Consensus 201 ~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~------------------~ItsLafSpDg~lLa 262 (1407)
.+|.+.|+|++|+|+|++||+|+ ++.|+||++.+++.+..+.+|.. .|++++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999986 78999999999999988876643 399999999999999
Q ss_pred EEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccccc
Q psy6522 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 263 Sgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
+|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.......
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~s~s~d~~v~iwd~~~~~~~~~~~----------- 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG----DKLVSGSGDRTVRIWDLRTGQCSLTLS----------- 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTTEEEEEEE-----------
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC----CEEEEecCCCcEEEEECCCCeeEEEEE-----------
Confidence 99999999999999999999999999999999999976 899999999999999998764332211
Q ss_pred CCCCcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEE-------eecCCCcceEEEcCCCCEEEEEeCCCe
Q psy6522 343 RPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGT 414 (1407)
Q Consensus 343 ~~h~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-------~~h~~~V~sIafSpdg~~LaSgs~DGt 414 (1407)
+...+.+++|+| ++.+|++|+.|+.|++||+... ..+..+ .+|...|.+++|+|++.+|++|+.||+
T Consensus 205 --~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 205 --IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp --CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 235689999999 8999999999999999998432 223333 578999999999999999999999999
Q ss_pred EEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCC
Q psy6522 415 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNE 494 (1407)
Q Consensus 415 I~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~ 494 (1407)
|++||+.+........ ............+|...|.+++|++++.+|++++. |+.|++||+.+++++..+.+|...
T Consensus 280 v~~wd~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp EEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEEECCSSC
T ss_pred EEEEECCCCCCccccc----CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEECCCCCC
Confidence 9999998654221100 00001111223467788999999999999999998 999999999999999999999999
Q ss_pred eEEEEEecC-----CCCEEEEEeCCCcEEEEECCCC
Q psy6522 495 VFVLESHPF-----DSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 495 V~sLafsP~-----dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
|.+++|++. ++.+|+||+.||+|+||++...
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999862 5789999999999999998643
No 36
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.4e-35 Score=345.09 Aligned_cols=296 Identities=16% Similarity=0.207 Sum_probs=256.7
Q ss_pred cEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 237 KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 237 ~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
+...++.+|.+.|++|+|+|++.+||+|+.||+|+|||..+++....+..|...|.+++|+|++ .+|++++.|+.+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g----~~lasg~~d~~i 130 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG----CAIACGGLDNKC 130 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS----SEEEEESTTSEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC----CEEEEeeCCCCE
Confidence 5667899999999999999999999999999999999999999999999999999999999977 899999999999
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
++|++........ ......+..|...|.+++|+|++..|++++.|+.|++||+. ....+..+.+|...|.+
T Consensus 131 ~v~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~---~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 131 SVYPLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE---SGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EEEECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEE
T ss_pred EEEEEeccccccc------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC---CCeEEEEEcCCCCCeEE
Confidence 9999865421111 01122334577899999999999999999999999999994 34567778899999999
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy6522 397 IQWSH--SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 474 (1407)
Q Consensus 397 IafSp--dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I 474 (1407)
++|+| ++.+|++|+.||+|++||++++++.... ..|...|.+++|+|++.+|++++. |+.|
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~----------------~~h~~~v~~v~~~p~~~~l~s~s~-D~~v 264 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF----------------ETHESDVNSVRYYPSGDAFASGSD-DATC 264 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE----------------CCCSSCEEEEEECTTSSEEEEEET-TSCE
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe----------------cCCCCCeEEEEEeCCCCEEEEEeC-CCeE
Confidence 99987 4689999999999999999988754422 347788999999999999999998 9999
Q ss_pred EEEECCCCceEEEEecC--CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC
Q psy6522 475 KIWDAFNGDLVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 475 ~IWDl~tg~~l~~l~gH--~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp 552 (1407)
++||+.++..+..+..+ ...+.+++|+| ++.+|++|+.||.|+|||+.++ ..+..+. .|.+.|++++|+|
T Consensus 265 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~--~~~~~l~-----~h~~~v~~l~~sp 336 (354)
T 2pbi_B 265 RLYDLRADREVAIYSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKG--SRVSILF-----GHENRVSTLRVSP 336 (354)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC--SEEEEEC-----CCSSCEEEEEECT
T ss_pred EEEECCCCcEEEEEcCCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCC--ceEEEEE-----CCCCcEEEEEECC
Confidence 99999999888777654 34789999999 9999999999999999999888 5555544 4678999999999
Q ss_pred CCCEEEEEeCCCeEEEEE
Q psy6522 553 DGTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 553 DG~~LAsgs~DG~I~Iwd 570 (1407)
||++||+++.||.|+||+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999995
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.5e-35 Score=353.00 Aligned_cols=327 Identities=24% Similarity=0.434 Sum_probs=281.6
Q ss_pred eEEEEEcCCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy6522 195 RQHYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 195 ~~~~~L~GH~~~V-~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVW 273 (1407)
+....+.+|.+.| +|+.+ +|++|++|+.||.|+|||+.+++++..+.+|...|.+++|+ +.+|++|+.||+|++|
T Consensus 109 ~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 4456788999875 55554 68999999999999999999999999999999999999998 5699999999999999
Q ss_pred eCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 274 Dl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
|+.+++.+..+.+|...|.++.|++ ..|++++.||+|++||+.++..... +..|...|.+++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~~~~~~~~------------~~~~~~~v~~~~ 246 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIETGQCLHV------------LMGHVAAVRCVQ 246 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESSSCCEEEE------------EECCSSCEEEEE
T ss_pred ECCcCcEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECCCCcEEEE------------EcCCcccEEEEE
Confidence 9999999999999999999999975 6899999999999999987643322 235668899999
Q ss_pred ECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccC
Q psy6522 354 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 433 (1407)
Q Consensus 354 fSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~ 433 (1407)
| ++.+|++|+.||.|++||+. ....+..+.+|...|.+++| ++.+|++|+.||.|++||+.+++.....
T Consensus 247 ~--~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~---- 315 (445)
T 2ovr_B 247 Y--DGRRVVSGAYDFMVKVWDPE---TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL---- 315 (445)
T ss_dssp E--CSSCEEEEETTSCEEEEEGG---GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred E--CCCEEEEEcCCCEEEEEECC---CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE----
Confidence 9 78899999999999999994 34566778889999999999 7889999999999999999988754422
Q ss_pred cCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEecCCCCEEEE
Q psy6522 434 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLS 510 (1407)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g---H~~~V~sLafsP~dg~~LaS 510 (1407)
..+...+.++.+ ++.+|++++. ||.|++||+.+++++..+.+ |...|++++|++ .+|++
T Consensus 316 ------------~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s 377 (445)
T 2ovr_B 316 ------------TGHQSLTSGMEL--KDNILVSGNA-DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVIT 377 (445)
T ss_dssp ------------CCCCSCEEEEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEE
T ss_pred ------------cCCcccEEEEEE--eCCEEEEEeC-CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEE
Confidence 235566777776 4678998888 99999999999999999987 888999999954 89999
Q ss_pred EeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCe----EEEEEcCCC
Q psy6522 511 AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH----LLVYGLGGF 574 (1407)
Q Consensus 511 gs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~----I~Iwdl~sg 574 (1407)
|+.||.|+|||+.++ ..+..+.....+.+.+.|++++|+|++.+||+++.||+ |.|||+...
T Consensus 378 ~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTG--EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EETTSEEEEEETTTC--CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EeCCCeEEEEECCCC--ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999998 66666643333456788999999999999999999998 999998753
No 38
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-36 Score=394.22 Aligned_cols=445 Identities=9% Similarity=-0.005 Sum_probs=313.5
Q ss_pred eeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEE-----------EEE
Q psy6522 174 REYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-----------ATL 242 (1407)
Q Consensus 174 r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l-----------~tl 242 (1407)
..++++.++.+.+|.... .+.+..+. |...|++++|+|++++|++|+.||.|+|||+.++++. ..+
T Consensus 71 ~L~S~s~D~~v~lWd~~~--~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~ 147 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYS--QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP 147 (902)
T ss_dssp EEEEEETTCEEEEEETTT--CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS
T ss_pred EEEEEECcCeEEEEECCC--CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc
Confidence 366778889999997643 34455554 7789999999999999999999999999999988764 234
Q ss_pred eCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCceEEEEecc------------------CCceEEEEeccCCCCC
Q psy6522 243 RGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGH------------------QGIITGVNFCPLEVNG 303 (1407)
Q Consensus 243 ~gH~~~ItsLafSpD-g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H------------------~~~VtsLafspd~~~~ 303 (1407)
.+|.+.|++|+|+|+ +.+|++|+.|++| |||+.+++++..+..| ...|++++|+|++
T Consensus 148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--- 223 (902)
T 2oaj_A 148 AARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--- 223 (902)
T ss_dssp SSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS---
T ss_pred ccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC---
Confidence 679999999999996 5789999999999 9999999998888766 4779999999976
Q ss_pred ceEEEEEecCCceeEEeeccccccceeee-----cc--------------------------c---cccc-c--------
Q psy6522 304 FNYLASTSTDGCIGFWKYKLDIDISKTVF-----HE--------------------------P---VMFN-E-------- 340 (1407)
Q Consensus 304 ~~~LaSgs~DGtI~vWDl~t~~~~~~~~~-----~~--------------------------~---~~~~-~-------- 340 (1407)
.+|++++.||+|++||+.++..+..... +. + ..+. .
T Consensus 224 -~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 224 -LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp -SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred -CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 8999999999999999987644321000 00 0 0000 0
Q ss_pred ----c-----------------------------cC-CCCcceEEEEECC----------CCceEEEeeCCceEEEEecc
Q psy6522 341 ----R-----------------------------IR-PGNAHILCSSFSP----------GGLFLATGSGDHHVRVYKMD 376 (1407)
Q Consensus 341 ----~-----------------------------~~-~h~~~I~~vafSp----------dg~~Lasgs~DG~I~IwDl~ 376 (1407)
. +. .+...|.++.+.+ ++..+++++.||.|++|++.
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~ 382 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence 0 00 1122333444433 12255666667777777763
Q ss_pred CCCCCce--------------------------------------eEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEE
Q psy6522 377 GVDSPLG--------------------------------------ILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIW 418 (1407)
Q Consensus 377 ~~~~~~~--------------------------------------i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IW 418 (1407)
....... ...+.+|...+.+++|+|++++|++|+.||+|++|
T Consensus 383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlW 462 (902)
T 2oaj_A 383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY 462 (902)
T ss_dssp TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEE
T ss_pred CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEE
Confidence 2210000 00134455666777888999999999999999999
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC----------------
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG---------------- 482 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg---------------- 482 (1407)
|+.++..... ..............|...|.+++|+||+++|++++. ||+|+|||+.++
T Consensus 463 d~~~g~~~~~-----~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 463 DASHGDIQDN-----ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-TGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp ESSCCTTTTT-----BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-TSCEEEEEEEECCC--------------
T ss_pred ECCCccccCC-----ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-CcEEEEEEecCccccCccccCCCcccce
Confidence 9987742100 000000000001257789999999999999999998 999999998766
Q ss_pred -----------------------------ceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeee
Q psy6522 483 -----------------------------DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF 533 (1407)
Q Consensus 483 -----------------------------~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~ 533 (1407)
+++..+.+|.+.|++|+|+| ++ +||+|+.||+|+|||+.+. ..+...
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~--~~~~~~ 612 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGP--AIIYME 612 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTT--EEEEEE
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCC--eEEEEe
Confidence 24778899999999999999 99 9999999999999999776 333221
Q ss_pred e-eeecCCCCCceeEEEEC-----CCC---CEEEEEeCCCeEEEEEc---CCCccccccCCc-----------eE-ec--
Q psy6522 534 H-NIVEGQGEGALFDGKWS-----PDG---TTCALTDSYGHLLVYGL---GGFKRPQNIPRE-----------LF-FH-- 587 (1407)
Q Consensus 534 ~-~~~~g~~~~~I~slafS-----pDG---~~LAsgs~DG~I~Iwdl---~sg~~~~~lp~~-----------v~-Fs-- 587 (1407)
. ..+...|.+.|++++|+ ||| ++|++++.||+|++|++ .+|+....+... +. |+
T Consensus 613 ~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~ 692 (902)
T 2oaj_A 613 NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKE 692 (902)
T ss_dssp EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETT
T ss_pred ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecC
Confidence 1 01111456789999999 886 89999999999999999 777765544321 11 33
Q ss_pred --------------------CCCcEEEecCCCeeeEeeCCCCCCCCcCCCCcccCCCCc---c------CCCCCceEEeC
Q psy6522 588 --------------------TDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGT---P------YPPEVQRLVPG 638 (1407)
Q Consensus 588 --------------------~D~~~Lv~~~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~---~------yppd~Q~Lv~G 638 (1407)
+++..|+.. ..-+.+|+..+++..+..-..+ +.+.+. . |.++++.||.+
T Consensus 693 ~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~~~-~~~~~v~~~~~~~~~~~~~~~~~l~~~ 770 (902)
T 2oaj_A 693 TKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFKYP-LAATGLSYISTVEKNNDRKNLTVIITL 770 (902)
T ss_dssp TCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECSSC-EEEEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred CCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEcccc-eeeeEEEEEEeccccccccCceEEEEE
Confidence 455555544 3446799998887766443333 333332 3 67778888764
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-34 Score=330.55 Aligned_cols=295 Identities=20% Similarity=0.353 Sum_probs=256.0
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc
Q psy6522 236 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315 (1407)
Q Consensus 236 g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt 315 (1407)
..+..++.+|...|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++ .+|++++.|+.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~ 88 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS----NLLVSASDDKT 88 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC----CEEEEECCCCE
Confidence 45677889999999999999999999999999999999999999999999999999999999976 89999999999
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcc
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~ 395 (1407)
|++||+.++.... .+..|...|.+++|+|++.+|++|+.|+.|++||+. ....+..+..|...|.
T Consensus 89 i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 89 LKIWDVSSGKCLK------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK---TGKCLKTLPAHSDPVS 153 (312)
T ss_dssp EEEEETTTCCEEE------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEE
T ss_pred EEEEECCCCcEEE------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCEEEEEecCCCCcEE
Confidence 9999998764332 233566889999999999999999999999999994 3455677888999999
Q ss_pred eEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy6522 396 SIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475 (1407)
Q Consensus 396 sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~ 475 (1407)
+++|+|++.+|++++.||.|++||+.+++...... ..+...+..++|+|++++|++++. |+.|+
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~ 217 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI---------------DDDNPPVSFVKFSPNGKYILAATL-DNTLK 217 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---------------CSSCCCEEEEEECTTSSEEEEEET-TTEEE
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEe---------------ccCCCceEEEEECCCCCEEEEEcC-CCeEE
Confidence 99999999999999999999999999877543221 224567899999999999999998 99999
Q ss_pred EEECCCCceEEEEecCCCCeEE--EEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC
Q psy6522 476 IWDAFNGDLVQVLKGHTNEVFV--LESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 553 (1407)
Q Consensus 476 IWDl~tg~~l~~l~gH~~~V~s--LafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD 553 (1407)
+||+.+++++..+.+|...+.+ ..+++.++.+|++|+.||.|++||+.++ ..+..+. .|...|.+++|+|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~-----~h~~~v~~~~~~p~ 290 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQ-----GHTDVVISTACHPT 290 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC--CEEEEEC-----CCSSCEEEEEECSS
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc--hhhhhhh-----ccCCcEEEEeecCc
Confidence 9999999999999998765433 3455447899999999999999999988 6666554 46788999999999
Q ss_pred CCEEEEEe--CCCeEEEEEcC
Q psy6522 554 GTTCALTD--SYGHLLVYGLG 572 (1407)
Q Consensus 554 G~~LAsgs--~DG~I~Iwdl~ 572 (1407)
+.+|++++ .||.|++|+..
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999864
No 40
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-35 Score=350.87 Aligned_cols=290 Identities=12% Similarity=0.199 Sum_probs=231.1
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEEC------CCeEEEEEcCCCcE----EEEEeCCCCCeEEEEEcCCCCEEEEEECCCe
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGAD------DLLIKLWRARDGKL----LATLRGCSGEISDIAIDNRNILLAAGTVDKT 269 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~------DG~V~IWDl~tg~~----l~tl~gH~~~ItsLafSpDg~lLaSgs~DGt 269 (1407)
..+|...|++|+|+|||++||+|+. |+.|++|+..++.. .....+|...|++++|+|++.+ ++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 3579999999999999999999998 77899999877653 3345579999999999999865 56778999
Q ss_pred EEEEeCCCCceEE----EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 270 IRIWNLQTLAPIS----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 270 IrVWDl~tg~~v~----~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
|+|||+.+++... ...+|.+.|++++|+|++ .+|++++.|++|++||+.++.... .+..|
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg----~~l~sgs~dg~v~iwd~~~~~~~~------------~~~~h 180 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG----TQAVSGGKDFSVKVWDLSQKAVLK------------SYNAH 180 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSS----SEEEEEETTSCEEEEETTTTEEEE------------EECCC
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC----CEEEEEeCCCeEEEEECCCCcEEE------------EEcCC
Confidence 9999998876543 445899999999999977 899999999999999998763322 23456
Q ss_pred CcceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCC-CEEEEEeCCCeEEEEEccCC
Q psy6522 346 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 346 ~~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg-~~LaSgs~DGtI~IWDl~t~ 423 (1407)
...|.+++|++++. +|++++.|+.|++||+.... ......+..|...+.+++|+|++ .+|++|+.|+.|++||+.++
T Consensus 181 ~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 181 SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCCEEEEEEccCCCceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 78999999999875 78999999999999995432 23333345577789999999975 58899999999999999877
Q ss_pred ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 424 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
+.... ...+...|++++|+|++. +|++++. |++|+|||+.+++++..+ +|.+.|++|+|+|
T Consensus 260 ~~~~~----------------~~~~~~~v~~l~~sp~~~~~lasgs~-D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP 321 (357)
T 4g56_B 260 DSAQT----------------SAVHSQNITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL-SHRDFVTGVAWSP 321 (357)
T ss_dssp GGCEE----------------ECCCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTSCEEEEEC-CCSSCEEEEEECS
T ss_pred cEeEE----------------EeccceeEEEEEEcCCCCCEEEEEeC-CCEEEEEECCCCcEeEEC-CCCCCEEEEEEeC
Confidence 64322 234677899999999984 6777777 999999999999887655 7999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q psy6522 503 FDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 503 ~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.++.+|+|||.||+|++|++.+.
T Consensus 322 ~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCC
Confidence 78999999999999999999764
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-35 Score=346.38 Aligned_cols=305 Identities=15% Similarity=0.153 Sum_probs=234.9
Q ss_pred EEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-----------CceEEEEeccCCceEEEEe
Q psy6522 228 IKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----------LAPISVLVGHQGIITGVNF 296 (1407)
Q Consensus 228 V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t-----------g~~v~~l~~H~~~VtsLaf 296 (1407)
.+.|++....+ ..|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW 90 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence 45677655432 35778899999999999999888 67778876321 1112223346678999999
Q ss_pred ccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEecc
Q psy6522 297 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 376 (1407)
Q Consensus 297 spd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~ 376 (1407)
+|+ ..|++|+.||+|++||+.++....... .....|...|.+++|+|+|++|++|+.|+.|++||+.
T Consensus 91 s~d-----~~l~~~s~dg~v~lWd~~~~~~~~~~~--------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 91 VGE-----RGILVASDSGAVELWELDENETLIVSK--------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp ETT-----TEEEEEETTSEEEEEEECTTSSCEEEE--------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eCC-----CeEEEEECCCEEEEEeccCCCceeEee--------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 996 478899999999999998875433221 1234677899999999999999999999999999993
Q ss_pred CCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEE
Q psy6522 377 GVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 455 (1407)
Q Consensus 377 ~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtsl 455 (1407)
....+..+.+|.+.|.+++|++++. +|++++.||+|+|||+++++..... ....+...+.++
T Consensus 158 ---~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~~~~~~~~~~~ 220 (344)
T 4gqb_B 158 ---QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI--------------GCSAPGYLPTSL 220 (344)
T ss_dssp ---TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC--------------C----CCCEEEE
T ss_pred ---CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee--------------ecceeeccceee
Confidence 4566778899999999999999985 7899999999999999987754321 112345678999
Q ss_pred EECCCC-CEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCC-CEEEEEeCCCcEEEEECCCCCccceeee
Q psy6522 456 AWDASD-RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS-RVLLSAGHDGLIIIWDILSSKQRGYKWF 533 (1407)
Q Consensus 456 afSpdg-~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg-~~LaSgs~DG~V~IWDi~sgk~~~l~~~ 533 (1407)
+|+|++ .+|++++. ||.|+|||+.+++++..+.+|...|++++|+| ++ .+|++|+.||+|+|||+.++ +.+. +
T Consensus 221 ~~~p~~~~~l~sg~~-dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp-~g~~~lasgs~D~~i~vwd~~~~--~~~~-~ 295 (344)
T 4gqb_B 221 AWHPQQSEVFVFGDE-NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP-HSVPFLASLSEDCSLAVLDSSLS--ELFR-S 295 (344)
T ss_dssp EECSSCTTEEEEEET-TSEEEEEESCC--CCEEEECCSSCEEEEEECS-SSSCCEEEEETTSCEEEECTTCC--EEEE-E
T ss_pred eecCCCCcceEEecc-CCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc-CCCeEEEEEeCCCeEEEEECCCC--cEEE-E
Confidence 999965 56666776 99999999999999999999999999999999 65 68999999999999999887 4332 2
Q ss_pred eeeecCCCCCceeEEEECCCCC-EEEEEeCCCeEEEEEcCCCccc
Q psy6522 534 HNIVEGQGEGALFDGKWSPDGT-TCALTDSYGHLLVYGLGGFKRP 577 (1407)
Q Consensus 534 ~~~~~g~~~~~I~slafSpDG~-~LAsgs~DG~I~Iwdl~sg~~~ 577 (1407)
. .|.+.|++++|+|++. +|++++.||+|++|++.+....
T Consensus 296 ~-----~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 296 Q-----AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp C-----CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred c-----CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 2 4678999999999986 6778999999999999876543
No 42
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-34 Score=334.88 Aligned_cols=296 Identities=18% Similarity=0.246 Sum_probs=250.4
Q ss_pred cEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCC-----CceEEEEeccCCceEEEEeccCCCCCceEEEEE
Q psy6522 237 KLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQT-----LAPISVLVGHQGIITGVNFCPLEVNGFNYLAST 310 (1407)
Q Consensus 237 ~~l~tl~gH~~~ItsLafSpDg-~lLaSgs~DGtIrVWDl~t-----g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSg 310 (1407)
.+..+|.+|.+.|++|+|+|++ ++|++|+.|++|++|++.+ +.++..+.+|...|.+++|+|++ .+|+++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg----~~l~s~ 83 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG----AYALSA 83 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS----SEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC----CEEEEE
Confidence 4566899999999999999965 8999999999999999864 34577889999999999999977 899999
Q ss_pred ecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec
Q psy6522 311 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH 390 (1407)
Q Consensus 311 s~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h 390 (1407)
+.|++|++||+.++.... .+..|...|.+++|+|++.+|++|+.|+.|++||+. ...+..+.+|
T Consensus 84 s~D~~v~~wd~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~----~~~~~~~~~h 147 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQ------------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLGH 147 (319)
T ss_dssp ETTSEEEEEETTTTEEEE------------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT----SCEEEEECCC
T ss_pred eCCCEEEEEECCCCCeeE------------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEecc
Confidence 999999999998774322 234677899999999999999999999999999984 2456778899
Q ss_pred CCCcceEEEcCC------CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEE
Q psy6522 391 SDKVDSIQWSHS------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464 (1407)
Q Consensus 391 ~~~V~sIafSpd------g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L 464 (1407)
...|.+++|+|. +..|++++.|+.|++||+.+.+.... ...|...|.+++|+|++++|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD----------------FIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE----------------ECCCCSCEEEEEECTTSSEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee----------------ecCCCCcEEEEEEcCCCCEE
Confidence 999999999985 44899999999999999987764332 23577899999999999999
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeec---CCC
Q psy6522 465 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE---GQG 541 (1407)
Q Consensus 465 asgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~---g~~ 541 (1407)
++++. ||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++.+ .|++|++... ..+..+..... ..+
T Consensus 212 ~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~la~~~~~-~i~v~~~~~~--~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 212 ASAGK-DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP-NRYWLAAATAT-GIKVFSLDPQ--YLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp EEEET-TCEEEEEETTTTEEEEEEECC-SCEEEEEECS-SSSEEEEEETT-EEEEEEETTE--EEEEEECCCCTTCCGGG
T ss_pred EEEeC-CCeEEEEECCCCcEEEEecCC-CcEEEEEEcC-CCCEEEEEcCC-CcEEEEeCcC--eeeeccCccccccccCc
Confidence 99998 999999999999999999865 5799999999 89998888755 5999999876 44444332111 123
Q ss_pred CCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 542 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 542 ~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
...+.+++|+|||++|++++.||.|+||++.++
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 457899999999999999999999999998764
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-35 Score=350.91 Aligned_cols=331 Identities=14% Similarity=0.096 Sum_probs=268.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
..+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|+|||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34558999999999999999999999999988777666666 44555578999999999999999999999999998888
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg 364 (1407)
.+|...|++++|+|++ .+|++++.|+.|++||+.++.... .+..|...|.+++|+|++.+|+++
T Consensus 136 ~~h~~~v~~~~~~~~~----~~l~s~s~d~~i~iwd~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSG----EALISSSQDMQLKIWSVKDGSNPR------------TLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp TSSSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCCCE------------EEECCSSCEEEEEEETTTTEEEEE
T ss_pred ccccCccEEEEECCCC----CEEEEEeCCCeEEEEeCCCCcCce------------EEcCCCCcEEEEEEcCCCCEEEEE
Confidence 8999999999999976 899999999999999998764332 233567899999999999999999
Q ss_pred eCCceEEEEeccCCCCCceeEEEee------------------------cCCCcceEEEcCCCCEEEEEeCCCeEEEEEc
Q psy6522 365 SGDHHVRVYKMDGVDSPLGILEVEE------------------------HSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~~~~i~~l~~------------------------h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl 420 (1407)
+.|+.|++||+.. ...+..+.. +...+.+++|+|++.+|++|+.||.|++||+
T Consensus 200 ~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 276 (420)
T 3vl1_A 200 SLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNV 276 (420)
T ss_dssp ETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEET
T ss_pred cCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEEC
Confidence 9999999999943 233444433 2355666777899999999999999999999
Q ss_pred cCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCce-EEEEec-CCCCeEE
Q psy6522 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDL-VQVLKG-HTNEVFV 497 (1407)
Q Consensus 421 ~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG~I~IWDl~tg~~-l~~l~g-H~~~V~s 497 (1407)
.++...... ...+...|.+++|+|++. +|++++. ||.|++||+.+++. +..+.+ |...|.+
T Consensus 277 ~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 340 (420)
T 3vl1_A 277 FSKEQTIQL---------------PSKFTCSCNSLTVDGNNANYIYAGYE-NGMLAQWDLRSPECPVGEFLINEGTPINN 340 (420)
T ss_dssp TTCCEEEEE---------------CCTTSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCTTSCSEEEEESTTSCEEE
T ss_pred CCCceeEEc---------------ccccCCCceeEEEeCCCCCEEEEEeC-CCeEEEEEcCCCcCchhhhhccCCCCceE
Confidence 987644322 124667899999999999 8888887 99999999998754 677776 6677888
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCCcc-ceeeee-eeecCCCCCceeEEEECCCCC---EEEEEeCCCeEEEEEcC
Q psy6522 498 LESHPFDSRVLLSAGHDGLIIIWDILSSKQR-GYKWFH-NIVEGQGEGALFDGKWSPDGT---TCALTDSYGHLLVYGLG 572 (1407)
Q Consensus 498 LafsP~dg~~LaSgs~DG~V~IWDi~sgk~~-~l~~~~-~~~~g~~~~~I~slafSpDG~---~LAsgs~DG~I~Iwdl~ 572 (1407)
+.+ + ++.+|++++.||.|+||++...... .+..+. ......+...|.+++|+|++. .|++++.+|.+.+|++.
T Consensus 341 ~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 341 VYF-A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEE-E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEe-C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 755 5 6789999999999999999874211 111000 001124567899999999999 78888889999999986
Q ss_pred C
Q psy6522 573 G 573 (1407)
Q Consensus 573 s 573 (1407)
+
T Consensus 419 ~ 419 (420)
T 3vl1_A 419 N 419 (420)
T ss_dssp C
T ss_pred C
Confidence 5
No 44
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.4e-35 Score=346.07 Aligned_cols=287 Identities=15% Similarity=0.225 Sum_probs=227.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC-----------CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD-----------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 270 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~t-----------g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtI 270 (1407)
.|...|.+++|+|||++|++++ |+++++||... .........|...|++++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5677899999999999999888 67888886321 11112223467889999999986 67899999999
Q ss_pred EEEeCCCCceEEE----EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC
Q psy6522 271 RIWNLQTLAPISV----LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 271 rVWDl~tg~~v~~----l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~ 346 (1407)
+|||+.+++.+.. +.+|.+.|++|+|+|++ .+|++|+.|++|++||+.++..+. .+..|.
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg----~~l~sgs~d~~i~iwd~~~~~~~~------------~~~~h~ 169 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG----TQAVSGSKDICIKVWDLAQQVVLS------------SYRAHA 169 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEE------------EECCCS
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCC----CEEEEEeCCCeEEEEECCCCcEEE------------EEcCcC
Confidence 9999998876543 44899999999999977 899999999999999998774322 334677
Q ss_pred cceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC-CCEEEEEeCCCeEEEEEccCCc
Q psy6522 347 AHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQ 424 (1407)
Q Consensus 347 ~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd-g~~LaSgs~DGtI~IWDl~t~~ 424 (1407)
..|.+++|++++. +|++|+.|+.|+|||+.... .........|...+.+++|+|+ +.+|++|+.||+|+|||+++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 9999999999885 78999999999999994332 2222223456677999999985 5688999999999999999876
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecC
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF 503 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~ 503 (1407)
.... ...|...|++++|+|++. +|++++. |++|+|||+.+++++ .+.+|.+.|++|+|+|.
T Consensus 249 ~~~~----------------~~~h~~~v~~v~fsp~g~~~lasgs~-D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 249 CVLS----------------SAVHSQCVTGLVFSPHSVPFLASLSE-DCSLAVLDSSLSELF-RSQAHRDFVRDATWSPL 310 (344)
T ss_dssp CCEE----------------EECCSSCEEEEEECSSSSCCEEEEET-TSCEEEECTTCCEEE-EECCCSSCEEEEEECSS
T ss_pred EEEE----------------EcCCCCCEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCC
Confidence 4332 235778999999999984 6777777 999999999988765 57899999999999994
Q ss_pred CCCEEEEEeCCCcEEEEECCCC
Q psy6522 504 DSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 504 dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+..+|+|||.||+|++|++.+.
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEEcCCCeEEEEECCCC
Confidence 4457889999999999999775
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=335.61 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=237.6
Q ss_pred CCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--ceEEEE-ec-cCCceEEEEeccCCCCCceEEEE
Q psy6522 234 RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVL-VG-HQGIITGVNFCPLEVNGFNYLAS 309 (1407)
Q Consensus 234 ~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg--~~v~~l-~~-H~~~VtsLafspd~~~~~~~LaS 309 (1407)
.+.+++.++.+|.+.|.+++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |...|.+++|+|++ .+|++
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----~~las 75 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----SLLAA 75 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----SEEEE
T ss_pred cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----CEEEE
Confidence 356678899999999999999988 9999999999999999875 445556 34 99999999999976 89999
Q ss_pred EecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCC-CCCceeEEEe
Q psy6522 310 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV-DSPLGILEVE 388 (1407)
Q Consensus 310 gs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~-~~~~~i~~l~ 388 (1407)
++.|++|++|++....... ........+..|...|.+++|+|++.+|++|+.|+.|++||+... .....+..+.
T Consensus 76 ~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp EETTSCEEEEEC------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred EeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 9999999999986431100 001122345578889999999999999999999999999999432 3345566788
Q ss_pred ecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC--CCEEEE
Q psy6522 389 EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVIT 466 (1407)
Q Consensus 389 ~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd--g~~Las 466 (1407)
+|...|.+++|+|++.+|++|+.|++|++||+.++..... ....+|...|.+++|+|+ +.+|++
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~--------------~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV--------------AVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE--------------EEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEE--------------EEccCCCCcEEEEEecCCCCeeEEEE
Confidence 9999999999999999999999999999999876642211 112457789999999999 668888
Q ss_pred EEecCCeEEEEECCCC--------ceEEEEec-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeee
Q psy6522 467 AINFNFQIKIWDAFNG--------DLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIV 537 (1407)
Q Consensus 467 gs~~DG~I~IWDl~tg--------~~l~~l~g-H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~ 537 (1407)
++. |++|+|||+.++ .+...+.+ |...|++++|++ + .+|++++.||.|+|||+.++....+.. ..
T Consensus 217 ~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw~~~~~~~~~~~~---~~ 290 (330)
T 2hes_X 217 GSD-DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVYEEVDGEWKVFAK---RA 290 (330)
T ss_dssp EET-TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEEEEETTEEEEEEE---ES
T ss_pred EeC-CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEEEcCCCceEEEec---cc
Confidence 887 999999998754 44555655 999999999997 4 489999999999999987662111111 11
Q ss_pred cCCCCCceeEEEECC--CCCEEEEEeCCCeEEEEEcCC
Q psy6522 538 EGQGEGALFDGKWSP--DGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 538 ~g~~~~~I~slafSp--DG~~LAsgs~DG~I~Iwdl~s 573 (1407)
.++....|.+++|+| ++++||+++.||.|+||++..
T Consensus 291 ~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 291 LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 222223899999999 799999999999999999865
No 46
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=368.45 Aligned_cols=294 Identities=22% Similarity=0.326 Sum_probs=251.6
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCC-----cEEEEEeCCCCCeEEEEEcCCCCEEEEEECC
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDG-----KLLATLRGCSGEISDIAIDNRNILLAAGTVD 267 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG-~~LaTGS~DG~V~IWDl~tg-----~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D 267 (1407)
+.+...+.+|.+.|+||+|+|++ ++|+||+.|++|+||++.+. .....+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 45667889999999999999874 79999999999999998763 4567899999999999999999999999999
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
++|+|||+.++..+..+.+|...|.+++|+|++ .+|++++.|++|++||+...... ........|..
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~D~~i~iwd~~~~~~~---------~~~~~~~~h~~ 518 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN----RQIVSASRDRTIKLWNTLGECKY---------TISEGGEGHRD 518 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEE---------EECSSTTSCSS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC----CEEEEEeCCCEEEEEECCCCcce---------eeccCCCCCCC
Confidence 999999999999999999999999999999976 89999999999999997543111 11112245778
Q ss_pred ceEEEEECCCC--ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q psy6522 348 HILCSSFSPGG--LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 425 (1407)
Q Consensus 348 ~I~~vafSpdg--~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~ 425 (1407)
.|.|++|+|++ ..|++|+.|+.|++||+. .......+.+|.+.|.+++|+|++.+|++|+.||+|+|||+.+++.
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~---~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETT---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECC---CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 89999999987 589999999999999994 3455667889999999999999999999999999999999998875
Q ss_pred EEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCC-------------
Q psy6522 426 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT------------- 492 (1407)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~------------- 492 (1407)
.... .+...|.+++|+|++.+|+++. ++.|+|||+.++.++..+..|.
T Consensus 596 ~~~~-----------------~~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 596 LYSL-----------------EANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp EECC-----------------BCSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC------------
T ss_pred EEEe-----------------cCCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccc
Confidence 4321 1335689999999998887765 6789999999999888776432
Q ss_pred ------CCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 493 ------NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 493 ------~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
..|++++|+| ++.+|++|+.||+|+||++.
T Consensus 657 ~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ----CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred cCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 1378999999 99999999999999999985
No 47
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-33 Score=342.35 Aligned_cols=337 Identities=20% Similarity=0.340 Sum_probs=274.7
Q ss_pred eEEEEEcCCCCCE-EEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q psy6522 195 RQHYVNLGHLSAV-FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 195 ~~~~~L~GH~~~V-~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVW 273 (1407)
.....+.+|...| +|+.| ++++|++|+.||+|+|||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|+||
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999988 99999999999999
Q ss_pred eCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec-----------ccccccccc
Q psy6522 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-----------EPVMFNERI 342 (1407)
Q Consensus 274 Dl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~-----------~~~~~~~~~ 342 (1407)
|+.+++.+..+.+|.+.|.+++|++.. ++.+|++++.||+|++||+............ .........
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 999999999999999999999999642 4489999999999999999876433221110 001123345
Q ss_pred CCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccC
Q psy6522 343 RPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 343 ~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t 422 (1407)
..|...+.++ ++++.+|++|+.||.|++||+. ....+..+.+|...|.+++|+|++.+|++|+.||.|++||+.+
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA---QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETT---TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECC---CCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 5677777776 5678899999999999999993 4556777889999999999999999999999999999999998
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
++..... ..|...|.+++|+ +.+|++++. ||.|++||+.++.....+. |...+..++|++
T Consensus 342 ~~~~~~~----------------~~h~~~v~~~~~~--~~~l~s~s~-dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~ 401 (464)
T 3v7d_B 342 GELMYTL----------------QGHTALVGLLRLS--DKFLVSAAA-DGSIRGWDANDYSRKFSYH-HTNLSAITTFYV 401 (464)
T ss_dssp TEEEEEE----------------CCCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE
T ss_pred CcEEEEE----------------eCCCCcEEEEEEc--CCEEEEEeC-CCcEEEEECCCCceeeeec-CCCCccEEEEEe
Confidence 8754422 3477789999997 578999988 9999999999988766654 666788889999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q psy6522 503 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 503 ~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwd 570 (1407)
++.+|++|+ ||.|+|||+.++ +.+..+. ..+...|.+++|+ +..++++++.+|.+.+|-
T Consensus 402 -~~~~l~~~~-dg~i~iwd~~~g--~~~~~~~----~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 402 -SDNILVSGS-ENQFNIYNLRSG--KLVHANI----LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp -CSSEEEEEE-TTEEEEEETTTC--CEEESCT----TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred -CCCEEEEec-CCeEEEEECCCC--cEEehhh----ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 899999998 999999999998 5554322 2356889999997 445556666777665553
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.4e-34 Score=338.73 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=258.6
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------EEEEEeCCCCCeEEEEEcCC----C---CE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK------LLATLRGCSGEISDIAIDNR----N---IL 260 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~------~l~tl~gH~~~ItsLafSpD----g---~l 260 (1407)
......+.+|.+.|+||+|+| ++|++|+.||.|+|||+.+++ ++..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 455677889999999999998 799999999999999999988 78899999999999999999 9 99
Q ss_pred EEEEECCCeEEEEeCCCCce-----EEEEecc-----CCceEEEEec----cCCCCCceE-EEEEecCCceeEEeecc--
Q psy6522 261 LAAGTVDKTIRIWNLQTLAP-----ISVLVGH-----QGIITGVNFC----PLEVNGFNY-LASTSTDGCIGFWKYKL-- 323 (1407)
Q Consensus 261 LaSgs~DGtIrVWDl~tg~~-----v~~l~~H-----~~~VtsLafs----pd~~~~~~~-LaSgs~DGtI~vWDl~t-- 323 (1407)
|++++.|+.|++|++.++.. +..+..| ...|.+++|+ |++ .+ |++++.||.|++||+..
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL----SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC----ceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999998887 8888888 5899999999 865 78 99999999999999987
Q ss_pred ----ccccc-----eeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee---c-
Q psy6522 324 ----DIDIS-----KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE---H- 390 (1407)
Q Consensus 324 ----~~~~~-----~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~---h- 390 (1407)
..... ..... ......|...|.+++|+|++ +|++++.||.|++||+. ....+..+.. |
T Consensus 160 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS---TLRPLYNFESQHSMI 230 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT---TTEEEEEEECCC---
T ss_pred cccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC---CCceeEEEecccccc
Confidence 43332 11000 00113466889999999999 99999999999999994 3455667777 8
Q ss_pred --CCCcceEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEE
Q psy6522 391 --SDKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 465 (1407)
Q Consensus 391 --~~~V~sIafSpdg~~LaSgs~D---GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~La 465 (1407)
...|.+++|+|++.+|++++.| |.|++||+.+++......... ...........+...|.+++|+|++.+|+
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT---HSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc---ccccccccccccCCcEEEEEECCCCCEEE
Confidence 9999999999999999999999 999999999887554321100 00000011122678899999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEEe------cC---------------CCCeEEEEEecCCC----------CEEEEEeCC
Q psy6522 466 TAINFNFQIKIWDAFNGDLVQVLK------GH---------------TNEVFVLESHPFDS----------RVLLSAGHD 514 (1407)
Q Consensus 466 sgs~~DG~I~IWDl~tg~~l~~l~------gH---------------~~~V~sLafsP~dg----------~~LaSgs~D 514 (1407)
+++. ||.|+|||+.+++++..+. +| ...|++++|+| ++ .+|++++.|
T Consensus 308 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 308 SAGW-DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEET-TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETT
T ss_pred EEeC-CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-ccccccccccccceEEEecCC
Confidence 9998 9999999999999999999 88 99999999999 76 799999999
Q ss_pred CcEEEEECCCC
Q psy6522 515 GLIIIWDILSS 525 (1407)
Q Consensus 515 G~V~IWDi~sg 525 (1407)
|.|+||++.++
T Consensus 386 g~i~iw~~~~g 396 (397)
T 1sq9_A 386 RSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEEEC-
T ss_pred CcEEEEEcCCC
Confidence 99999999876
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=9.2e-34 Score=327.77 Aligned_cols=302 Identities=20% Similarity=0.256 Sum_probs=248.3
Q ss_pred CCCcEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCc-----eEEEEeccCCceEEEEeccCCCCCceEE
Q psy6522 234 RDGKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLA-----PISVLVGHQGIITGVNFCPLEVNGFNYL 307 (1407)
Q Consensus 234 ~tg~~l~tl~gH~~~ItsLafSpD-g~lLaSgs~DGtIrVWDl~tg~-----~v~~l~~H~~~VtsLafspd~~~~~~~L 307 (1407)
++..+..+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.. +...+.+|...|.+++|+|++ .+|
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg----~~l 101 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG----QFA 101 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS----SEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC----CEE
Confidence 344567789999999999999997 6899999999999999987543 567888999999999999976 899
Q ss_pred EEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEE
Q psy6522 308 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV 387 (1407)
Q Consensus 308 aSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l 387 (1407)
++++.|+.|++|+.......... ..+...+.++.+++++.+|++|+.|+.+++||+.. ........
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~--~~~~~~~~ 167 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRF------------VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQD 167 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECS
T ss_pred EEEcccccceEEeecccceeeee------------cCCCCceeEEEEeecCccceeecCCCeEEEEEeCC--CceEEEEe
Confidence 99999999999998776332222 23346788899999999999999999999999842 22334445
Q ss_pred eecCCCcceEEEcCCC--CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEE
Q psy6522 388 EEHSDKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI 465 (1407)
Q Consensus 388 ~~h~~~V~sIafSpdg--~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~La 465 (1407)
.+|...+.+++|++++ .++++++.|+.|++||+.+++..... ..|...|++++|+|++++|+
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~----------------~~h~~~v~~~~~s~~~~~l~ 231 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH----------------IGHTGYLNTVTVSPDGSLCA 231 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE----------------CCCSSCEEEEEECTTSSEEE
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe----------------cCCCCcEEEEEECCCCCEEE
Confidence 6789999999998875 47899999999999999987754422 34677899999999999999
Q ss_pred EEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeee----ecCCC
Q psy6522 466 TAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI----VEGQG 541 (1407)
Q Consensus 466 sgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~----~~g~~ 541 (1407)
+++. ||.|++||+.+++++..+.++ ..|.+++|+| ++. +++++.|+.|+|||+.++ ..+..+... ....+
T Consensus 232 s~s~-Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~-~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 232 SGGK-DGQAMLWDLNEGKHLYTLDGG-DIINALCFSP-NRY-WLCAATGPSIKIWDLEGK--IIVDELKQEVISTSSKAE 305 (340)
T ss_dssp EEET-TCEEEEEETTTTEEEEEEECS-SCEEEEEECS-SSS-EEEEEETTEEEEEETTTT--EEEEEECCC-------CC
T ss_pred EEeC-CCeEEEEEeccCceeeeecCC-ceEEeeecCC-CCc-eeeccCCCEEEEEECCCC--eEEEeccccceeeeccCC
Confidence 9998 999999999999999988865 5799999998 654 566778999999999887 544444311 11235
Q ss_pred CCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy6522 542 EGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 575 (1407)
Q Consensus 542 ~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~ 575 (1407)
...|++++|+|||++||+|+.||.|+||++.+|+
T Consensus 306 ~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 306 PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6789999999999999999999999999999985
No 50
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.9e-34 Score=332.82 Aligned_cols=301 Identities=18% Similarity=0.296 Sum_probs=238.9
Q ss_pred cEEEEEeCCCCCeEEEEE-----cC-CCCEEEEEECCCeEEEEeCCC-------CceEEEEeccCCceEEEEeccCCCCC
Q psy6522 237 KLLATLRGCSGEISDIAI-----DN-RNILLAAGTVDKTIRIWNLQT-------LAPISVLVGHQGIITGVNFCPLEVNG 303 (1407)
Q Consensus 237 ~~l~tl~gH~~~ItsLaf-----Sp-Dg~lLaSgs~DGtIrVWDl~t-------g~~v~~l~~H~~~VtsLafspd~~~~ 303 (1407)
.+..+|.+|.+.|++++| ++ ++++|++|+.|++|+|||+.+ +.+...+.+|...|.+++|+|++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--- 88 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN--- 88 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST---
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC---
Confidence 456789999999999999 76 899999999999999999974 34567889999999999999976
Q ss_pred ceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCce
Q psy6522 304 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLG 383 (1407)
Q Consensus 304 ~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~ 383 (1407)
.+|++++.|++|++||+.++.... .+..|...|.+++|+|++.+|++++.|+.|++||+.. .....
T Consensus 89 -~~l~s~s~D~~v~lwd~~~~~~~~------------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~ 154 (343)
T 2xzm_R 89 -CFAISSSWDKTLRLWDLRTGTTYK------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFS 154 (343)
T ss_dssp -TEEEEEETTSEEEEEETTSSCEEE------------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEE
T ss_pred -CEEEEEcCCCcEEEEECCCCcEEE------------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cceee
Confidence 899999999999999998764322 2345778999999999999999999999999999842 11111
Q ss_pred eEEEeecCCCcceEEEcCCC----------CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEE
Q psy6522 384 ILEVEEHSDKVDSIQWSHSH----------LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 453 (1407)
Q Consensus 384 i~~l~~h~~~V~sIafSpdg----------~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vt 453 (1407)
......|...|.+++|+|++ .+|++++.||.|++||.. ..... ....|...|.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~----------------~~~~h~~~v~ 217 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY----------------TFKAHESNVN 217 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE----------------EEECCSSCEE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE----------------EEcCccccce
Confidence 11123688899999999987 789999999999999943 22211 1234778899
Q ss_pred EEEECCCCCEEEEEEecCCeEEEEECCC-CceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceee
Q psy6522 454 MVAWDASDRWVITAINFNFQIKIWDAFN-GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 532 (1407)
Q Consensus 454 slafSpdg~~Lasgs~~DG~I~IWDl~t-g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~ 532 (1407)
+++|+|++++|++++. ||.|+|||+.+ ......+ .+...|.+++|+| ++.+|+ ++.|+.|+|||+.+++...+..
T Consensus 218 ~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp-~~~~la-~~~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 218 HLSISPNGKYIATGGK-DKKLLIWDILNLTYPQREF-DAGSTINQIAFNP-KLQWVA-VGTDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EEEECTTSSEEEEEET-TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECS-SSCEEE-EEESSCEEEEESSSCCSCSEEE
T ss_pred EEEECCCCCEEEEEcC-CCeEEEEECCCCcccceee-cCCCcEEEEEECC-CCCEEE-EECCCCEEEEEeCCCCCCceEE
Confidence 9999999999999998 99999999954 4444444 3556799999999 887765 5568899999998873222222
Q ss_pred eeeee------cCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy6522 533 FHNIV------EGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 575 (1407)
Q Consensus 533 ~~~~~------~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~ 575 (1407)
+.... ...+...|.+++|+|+|++||+|+.||.|++|++.++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 22000 01345679999999999999999999999999987653
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.9e-33 Score=333.25 Aligned_cols=309 Identities=14% Similarity=0.155 Sum_probs=248.3
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCCeEEEEEcC-CCCEEEEEECCC
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDN-RNILLAAGTVDK 268 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG-~~LaTGS~DG~V~IWDl~tg~~l~tl~--gH~~~ItsLafSp-Dg~lLaSgs~DG 268 (1407)
.+.+...+.+|...|+|++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 456777889999999999999999 999999999999999999998887776 6999999999999 789999999999
Q ss_pred eEEEEeCCCCceEEEEecc---CCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 269 TIRIWNLQTLAPISVLVGH---QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~l~~H---~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
.|+|||+.+ ..+..+..| ...|.+++|+|++ .+|++++.|+.|++||+... .. ..+..|
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~-~~------------~~~~~h 203 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR----QMLATGDSTGRLLLLGLDGH-EI------------FKEKLH 203 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT----TEEEEEETTSEEEEEETTSC-EE------------EEEECS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC----CEEEEECCCCCEEEEECCCC-EE------------EEeccC
Confidence 999999985 555666544 4789999999976 89999999999999998422 11 123356
Q ss_pred CcceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC-CCCEEEEEeCCCeEEEEEccCC
Q psy6522 346 NAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 346 ~~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp-dg~~LaSgs~DGtI~IWDl~t~ 423 (1407)
...|.+++|+|++. +|++|+.|+.|++||+.............+|...|.+++|+| ++.+|++++.||.|++||+.++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 78999999999999 999999999999999965433233333347999999999999 9999999999999999999987
Q ss_pred ceEEeeeccCcCC-CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec--CCCCeEEEEE
Q psy6522 424 QWRFIRLDMNTCL-PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG--HTNEVFVLES 500 (1407)
Q Consensus 424 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g--H~~~V~sLaf 500 (1407)
............. ...............+..++|+|++++ +++. |+.|+|||+.+++++..+.+ |...+.+++|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~-d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~ 360 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND-KRTIDIYDANSGGLVHQLRDPNAAGIISLNKF 360 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC-CCCEEEEETTTCCEEEEECBTTBCSCCCEEEE
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC-CCeEEEEecCCCceeeeecCCCCCceEEEEEE
Confidence 6533222111100 000011111122345667888888887 5555 99999999999999999987 4577888899
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 501 HPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 501 sP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
+| ++.+|++|+ ||.|+|||+.+
T Consensus 361 s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 361 SP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CT-TSSEEEEEE-TTEEEEEECC-
T ss_pred ec-CccEEEEec-CCcEEEEecCC
Confidence 99 999999997 99999999864
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-33 Score=330.69 Aligned_cols=292 Identities=18% Similarity=0.264 Sum_probs=241.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCC------------------ceEEEEeccCCCCCce
Q psy6522 244 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG------------------IITGVNFCPLEVNGFN 305 (1407)
Q Consensus 244 gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~------------------~VtsLafspd~~~~~~ 305 (1407)
+|.+.|++++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+|++ .
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~ 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG----K 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS----S
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC----C
Confidence 5999999999999999999976 78999999999998888876542 38999999977 8
Q ss_pred EEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeE
Q psy6522 306 YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 385 (1407)
Q Consensus 306 ~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~ 385 (1407)
+|++|+.|++|++||+.++... ..+..|...|.+++|+|++.+|++|+.|+.|++||+.. .....
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~ 201 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIV------------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSL 201 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEE------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEE------------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEE
Confidence 9999999999999999876322 22346778999999999999999999999999999943 23333
Q ss_pred EEeecCCCcceEEEcC-CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEE
Q psy6522 386 EVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464 (1407)
Q Consensus 386 ~l~~h~~~V~sIafSp-dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L 464 (1407)
.+ .+...+.+++|+| ++.+|++|+.||.|++||+.++........ .......|...|.+++|+|++.+|
T Consensus 202 ~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~---------~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 202 TL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS---------ENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------------CCCSSCEEEEEECTTSSEE
T ss_pred EE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc---------cccCCCCCCCCEEEEEECCCCCEE
Confidence 33 3667899999999 899999999999999999998875443210 011123578899999999999999
Q ss_pred EEEEecCCeEEEEECCC------------CceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceee
Q psy6522 465 ITAINFNFQIKIWDAFN------------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKW 532 (1407)
Q Consensus 465 asgs~~DG~I~IWDl~t------------g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~ 532 (1407)
++++. |+.|++||+.+ +.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.++ ..+..
T Consensus 272 ~s~s~-d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~--~~~~~ 347 (393)
T 1erj_A 272 VSGSL-DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSG--NPLLM 347 (393)
T ss_dssp EEEET-TSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTC--CEEEE
T ss_pred EEEeC-CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCC--eEEEE
Confidence 99998 99999999875 345678889999999999999 9999999999999999999988 66655
Q ss_pred eeeeecCCCCCceeEEEECC------CCCEEEEEeCCCeEEEEEcCCC
Q psy6522 533 FHNIVEGQGEGALFDGKWSP------DGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 533 ~~~~~~g~~~~~I~slafSp------DG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
+. .|...|.+++|++ ++++||+|+.||.|+||++...
T Consensus 348 l~-----~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 348 LQ-----GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EE-----CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EC-----CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 54 4678899999986 6899999999999999998653
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=329.20 Aligned_cols=340 Identities=15% Similarity=0.190 Sum_probs=244.1
Q ss_pred EEEEcCCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcEEEEEe-------------CCCCCeEEEEEcC-CCCEE
Q psy6522 197 HYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLR-------------GCSGEISDIAIDN-RNILL 261 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSp-dG~~LaTGS~DG~V~IWDl~tg~~l~tl~-------------gH~~~ItsLafSp-Dg~lL 261 (1407)
...+.+|.+.|+|++|+| ++++||+|+.||.|+|||+.++.....+. +|...|++++|+| ++.+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 456778999999999999 99999999999999999999886655443 5999999999999 78899
Q ss_pred EEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccc
Q psy6522 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 341 (1407)
Q Consensus 262 aSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~ 341 (1407)
++++.||.|++||+.+++.+..+. +...+.++.|++.. .+..+|++++.||.|++||+.++.... .
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~d~~~~~~~~------------~ 181 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS-TKHCLVAVGTRGPKVQLCDLKSGSCSH------------I 181 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC-SSCCEEEEEESSSSEEEEESSSSCCCE------------E
T ss_pred EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC-CCCcEEEEEcCCCeEEEEeCCCcceee------------e
Confidence 999999999999999999888776 77789999999975 344699999999999999998763322 2
Q ss_pred cCCCCcceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCcee-------------EEEeecCCCcceEEEcCCCCEEE
Q psy6522 342 IRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGI-------------LEVEEHSDKVDSIQWSHSHLRFV 407 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i-------------~~l~~h~~~V~sIafSpdg~~La 407 (1407)
+..|...|.+++|+|++. +|++|+.||.|++||+......... .....|...|.+++|+|++.+|+
T Consensus 182 ~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 335668899999999998 5899999999999999543321111 11257889999999999999999
Q ss_pred EEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy6522 408 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 487 (1407)
Q Consensus 408 Sgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~ 487 (1407)
+++.||.|++||+.++.......... .......+........+..+++++. ++.|++||+.+++++..
T Consensus 262 ~~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 262 TVGTDNRMRLWNSSNGENTLVNYGKV-----------CNNSKKGLKFTVSCGCSSEFVFVPY-GSTIAVYTVYSGEQITM 329 (408)
T ss_dssp EEETTSCEEEEETTTCCBCCCCCCCC-----------CCCCSSCCCCEECCSSSSCEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred EecCCCeEEEEECCCCccceeccccc-----------cccccccceeEEecCCCceEEEEec-CCEEEEEECcCCcceee
Confidence 99999999999999876432111000 0001111222222334555666666 99999999999999999
Q ss_pred EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC-CCCEEEEEeCCCeE
Q psy6522 488 LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTDSYGHL 566 (1407)
Q Consensus 488 l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp-DG~~LAsgs~DG~I 566 (1407)
+.+|...|++++|+| ++.+|++|+.||.|+|||+.++ ..+..... ......+.+ +...+.+++.++.+
T Consensus 330 ~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 398 (408)
T 4a11_B 330 LKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLY--EPVPDDDE--------TTTKSQLNPAFEDAWSSSDEEGGT 398 (408)
T ss_dssp ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred eccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCC--CccCCCCc--------eEeccccccccceeecccCccCce
Confidence 999999999999999 9999999999999999999988 44433221 011122333 33445567778999
Q ss_pred EEEEcCC
Q psy6522 567 LVYGLGG 573 (1407)
Q Consensus 567 ~Iwdl~s 573 (1407)
.+|+...
T Consensus 399 ~~W~~~~ 405 (408)
T 4a11_B 399 SAWSHPQ 405 (408)
T ss_dssp -------
T ss_pred eecCCcc
Confidence 9998653
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.9e-33 Score=329.29 Aligned_cols=296 Identities=16% Similarity=0.190 Sum_probs=250.9
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~--~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t 277 (1407)
+..|..+|++++|+|++++|++|+.|+.|+|||+.+++ .+..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8899999999999999999999999999999999999988
Q ss_pred CceEEE--EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC
Q psy6522 278 LAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 355 (1407)
Q Consensus 278 g~~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS 355 (1407)
++.... +..|...|.+++|+|++ .+|++++.|+.|++||+......... ......|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~v~i~d~~~~~~~~~~--------~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNE----KKFAVGSGSRVISICYFEQENDWWVC--------KHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS----SEEEEEETTSSEEEEEEETTTTEEEE--------EEECTTCCSCEEEEEEC
T ss_pred CeeeeeEEeecCCCceeEEEECCCC----CEEEEEeCCCEEEEEEecCCCcceee--------eeeecccCCCeeEEEEc
Confidence 875544 36789999999999976 89999999999999999876421111 11123566889999999
Q ss_pred CCCceEEEeeCCceEEEEeccC---------------CCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEc
Q psy6522 356 PGGLFLATGSGDHHVRVYKMDG---------------VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYY 420 (1407)
Q Consensus 356 pdg~~Lasgs~DG~I~IwDl~~---------------~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl 420 (1407)
|++.+|++++.||.|++||+.. ......+..+..|...|.+++|+|++.+|++++.||.|++||+
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999999999999731 1234556677789999999999999999999999999999999
Q ss_pred cCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC--Cce--------------
Q psy6522 421 KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN--GDL-------------- 484 (1407)
Q Consensus 421 ~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t--g~~-------------- 484 (1407)
.+++..... ..+...|.+++|+|++.+|+++ . |+.|++|++.+ ++.
T Consensus 232 ~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 232 DKKMAVATL----------------ASETLPLLAVTFITESSLVAAG-H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGTTEEEEE----------------ECSSCCEEEEEEEETTEEEEEE-T-TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCceeEEE----------------ccCCCCeEEEEEecCCCEEEEE-e-CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 988754432 2356689999999999988877 5 99999999987 421
Q ss_pred ------------------E------EEE-ecCCCCeEEEEEecCCC---CEEEEEeCCCcEEEEECCCC
Q psy6522 485 ------------------V------QVL-KGHTNEVFVLESHPFDS---RVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 485 ------------------l------~~l-~gH~~~V~sLafsP~dg---~~LaSgs~DG~V~IWDi~sg 525 (1407)
. ..+ .+|...|++++|++.++ .+|+||+.||.|+|||+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 0 223 48999999999886477 99999999999999999775
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-33 Score=315.56 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=251.3
Q ss_pred CCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeE
Q psy6522 191 YSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTI 270 (1407)
Q Consensus 191 ~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtI 270 (1407)
+..+++.+.+.+|.+.|++++| +++++|++|+.||.|+|||+.++.....+..|...|.+++|+|++.+|++|+.|+.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3467888999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC---ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 271 RIWNLQTL---APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 271 rVWDl~tg---~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
++|++... +.+..+.+|...|.++.|.. .+|++++.||.|++|| .... ...+..|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~d~~i~~~d--~~~~------------~~~~~~~~~ 143 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQD------GVVISGSWDKTAKVWK--EGSL------------VYNLQAHNA 143 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEEET------TEEEEEETTSEEEEEE--TTEE------------EEEEECCSS
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEecC------CEEEEEeCCCCEEEEc--CCcE------------EEecccCCC
Confidence 99998653 56778899999999999943 7999999999999999 2211 112234668
Q ss_pred ceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEee-cCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q psy6522 348 HILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 425 (1407)
Q Consensus 348 ~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~-h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~ 425 (1407)
.+.+++|+| ++.+|++++.||.|++||. ......+.. |...|.+++|+|++. |++++.||.|++||+.+++.
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQN-----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEET-----TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEec-----CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 899999988 8999999999999999994 233445555 889999999999998 99999999999999998775
Q ss_pred EEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCC
Q psy6522 426 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDS 505 (1407)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg 505 (1407)
.... ..+...|.+++|+|++ .|++++. ||.|++||+.+++++..+..|...|.+++|+| ++
T Consensus 218 ~~~~----------------~~~~~~i~~~~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~ 278 (313)
T 3odt_A 218 LRTY----------------EGHESFVYCIKLLPNG-DIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NG 278 (313)
T ss_dssp EEEE----------------ECCSSCEEEEEECTTS-CEEEEET-TSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TS
T ss_pred hhhh----------------hcCCceEEEEEEecCC-CEEEEec-CCEEEEEECCCCceeEEEeccCceEEEEEEcc-CC
Confidence 4422 2467789999999999 5777877 99999999999999999999999999999999 77
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q psy6522 506 RVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 506 ~~LaSgs~DG~V~IWDi~sg 525 (1407)
. +++++.||.|+|||+.++
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp C-EEEEETTSCEEEEESCGG
T ss_pred C-EEEEeCCCcEEEEeCCCC
Confidence 7 667999999999999887
No 56
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=328.24 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=231.6
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEE-EEEEC---CCeEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCC---CCEEEEEECC
Q psy6522 196 QHYVNLGHLSAVFCVLFDKLGEVI-VTGAD---DLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR---NILLAAGTVD 267 (1407)
Q Consensus 196 ~~~~L~GH~~~V~~vafSpdG~~L-aTGS~---DG~V~IWDl~tg~~l~tl-~gH~~~ItsLafSpD---g~lLaSgs~D 267 (1407)
..+.+.+|...|++++|+|++..+ ++|+. ||.|+|||+.+++..... .+|...|++++|+|+ +.+|++|+.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 345667899999999999999655 55655 899999999998876543 379999999999998 6999999999
Q ss_pred CeEEEEeCCCCc-eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC
Q psy6522 268 KTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 268 GtIrVWDl~tg~-~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~ 346 (1407)
|.|++||+.+++ .+..+.+|...|.++.|.+.
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------------- 122 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG----------------------------------------------- 122 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESG-----------------------------------------------
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccc-----------------------------------------------
Confidence 999999999988 88899999999999977541
Q ss_pred cceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC----CCcceEE----EcCCCCEEEEEeCCCeEEEE
Q psy6522 347 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS----DKVDSIQ----WSHSHLRFVSGSRDGTALIW 418 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~----~~V~sIa----fSpdg~~LaSgs~DGtI~IW 418 (1407)
++|+|++.+|++++.||.|++||+..... .+..+..|. ..|.+++ |++++.+|++++.||.|++|
T Consensus 123 -----~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 123 -----LGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp -----GGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred -----cccCCCccEEEEEeCCCeEEEEeCCCCCC--cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 12233444444444444444444422111 122222222 2566776 78899999999999999999
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC---CCCEEEEEEecCCeEEEEECCCCceEEEE-----ec
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA---SDRWVITAINFNFQIKIWDAFNGDLVQVL-----KG 490 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp---dg~~Lasgs~~DG~I~IWDl~tg~~l~~l-----~g 490 (1407)
|+.+++.... ..+...|.+++|+| ++.+|++++. ||.|++||+.+++.+..+ .+
T Consensus 196 d~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~ 257 (357)
T 3i2n_A 196 DLRNMALRWE-----------------TNIKNGVCSLEFDRKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSEKA 257 (357)
T ss_dssp ETTTTEEEEE-----------------EECSSCEEEEEESCSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred ECccCceeee-----------------cCCCCceEEEEcCCCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeeccCC
Confidence 9998775332 23567899999999 9999999988 999999999877654444 49
Q ss_pred CCCCeEEEEEecCCCC-EEEEEeCCCcEEEEECCCCCcc-----------------ceeeeeeeecCCCCCceeEEEECC
Q psy6522 491 HTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSSKQR-----------------GYKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 491 H~~~V~sLafsP~dg~-~LaSgs~DG~V~IWDi~sgk~~-----------------~l~~~~~~~~g~~~~~I~slafSp 552 (1407)
|...|++++|+| ++. +|++++.||.|+|||+.++... .+..+. .+...|.+++|+|
T Consensus 258 ~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 258 HKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-----LSTQPISSLDWSP 331 (357)
T ss_dssp CSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-----CCSSCEEEEEECS
T ss_pred CcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc-----cCCCCeeEEEEcC
Confidence 999999999999 777 8999999999999999865321 122222 3567899999999
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCCcc
Q psy6522 553 DGTTCA-LTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 553 DG~~LA-sgs~DG~I~Iwdl~sg~~ 576 (1407)
+|++|+ +++.||.|+||++.+...
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCeEEEEecCCCcEEEEECCCccc
Confidence 999998 799999999999987653
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-32 Score=318.62 Aligned_cols=298 Identities=14% Similarity=0.170 Sum_probs=257.4
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCcee
Q psy6522 238 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIG 317 (1407)
Q Consensus 238 ~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~ 317 (1407)
....+.+|.+.|++|+|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT----KYCVTGSADYSIK 99 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS----SEEEEEETTTEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC----CEEEEEeCCCeEE
Confidence 345688999999999999999999999999999999999999999999999999999999976 8999999999999
Q ss_pred EEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC-----ceEEEEeccCCCCC--------cee
Q psy6522 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSP--------LGI 384 (1407)
Q Consensus 318 vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D-----G~I~IwDl~~~~~~--------~~i 384 (1407)
+||+.++....... +...+.+++|+|++.+|++++.+ +.|.+|++...... ..+
T Consensus 100 iwd~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEETTTCCEEEEEE-------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EEECCCCcEEEEee-------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 99998774433222 34789999999999999999998 99999999644322 123
Q ss_pred EEEeecCC--CcceEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEEEEEECCCC
Q psy6522 385 LEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461 (1407)
Q Consensus 385 ~~l~~h~~--~V~sIafSpdg~~LaSgs~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg 461 (1407)
..+..|.. .+.+++|+|++.+|++++.||.|++||+.+ ...... ...+...|.+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------------~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS----------------IDLHEKSISDMQFSPDL 230 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE----------------EECCSSCEEEEEECTTS
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE----------------EecCCCceeEEEECCCC
Confidence 34555666 899999999999999999999999999987 332221 12366789999999999
Q ss_pred CEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCC--------------cEEEEECCCCCc
Q psy6522 462 RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG--------------LIIIWDILSSKQ 527 (1407)
Q Consensus 462 ~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG--------------~V~IWDi~sgk~ 527 (1407)
.+|++++. |+.|++||+.+++++..+. +...+.+++|+| ++.++++++.++ .|++||+.++
T Consensus 231 ~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-- 305 (369)
T 3zwl_B 231 TYFITSSR-DTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-- 305 (369)
T ss_dssp SEEEEEET-TSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTC--
T ss_pred CEEEEecC-CceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--
Confidence 99999998 9999999999999999888 778899999999 999999999988 8999999988
Q ss_pred cceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccc
Q psy6522 528 RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQ 578 (1407)
Q Consensus 528 ~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~ 578 (1407)
..+..+. .+...|.+++|+|++++|++++.||.|+||++..+....
T Consensus 306 ~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 306 EEIGRVQ-----GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp CEEEEEE-----CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred cchhhee-----cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 6666654 467899999999999999999999999999998866543
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-32 Score=315.75 Aligned_cols=285 Identities=14% Similarity=0.213 Sum_probs=245.6
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---EEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q psy6522 197 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIR 271 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~---~l~tl~--gH~~~ItsLafSpDg~lLaSgs~DGtIr 271 (1407)
.....+|...|++++|+|++++|++++ ||.|+|||+.++. .+..+. +|...|.+++|+|++++|++++.|+.|+
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 334458999999999999999999999 9999999998765 334444 7999999999999999999999999999
Q ss_pred EEeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcce
Q psy6522 272 IWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 272 VWDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I 349 (1407)
+||+.+++ ....+..|...|.+++|+|++ .+|++++.||.|++||+.++.... .+..|...+
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~v~~~d~~~~~~~~------------~~~~~~~~i 186 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDS----KVCFSCCSDGNIAVWDLHNQTLVR------------QFQGHTDGA 186 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEEEE------------EECCCSSCE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCC----CEEEEEeCCCcEEEEeCCCCceee------------eeecccCce
Confidence 99999877 667788999999999999976 899999999999999998763222 223466889
Q ss_pred EEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEee
Q psy6522 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 350 ~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~ 429 (1407)
.+++|+|++.+|++++.||.|++||+... ..+.. ..|...+.+++|+|++.+|++++.+|.|++||+.++....
T Consensus 187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-- 260 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-- 260 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE--
T ss_pred EEEEECCCCCEEEEEecCCcEEEEECCCC---ceEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE--
Confidence 99999999999999999999999999432 23333 3578889999999999999999999999999998776322
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEE
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 509 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~La 509 (1407)
...+...|.+++|+|++++|++++. ||.|++||+.+++.+..+ .|...|.+++|+| ++++|+
T Consensus 261 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~ 322 (337)
T 1gxr_A 261 ---------------LHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIV 322 (337)
T ss_dssp ---------------ECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEE
T ss_pred ---------------EcCCccceeEEEECCCCCEEEEecC-CCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEE
Confidence 1346778999999999999999998 999999999999888554 5888999999999 999999
Q ss_pred EEeCCCcEEEEEC
Q psy6522 510 SAGHDGLIIIWDI 522 (1407)
Q Consensus 510 Sgs~DG~V~IWDi 522 (1407)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999997
No 59
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-33 Score=329.07 Aligned_cols=281 Identities=16% Similarity=0.193 Sum_probs=248.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEE
Q psy6522 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 282 (1407)
Q Consensus 203 H~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~ 282 (1407)
|.+.|++++|+|++++|++|+.||.|+||| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 788999999999999999999999999999 7888999999999999999999999999999999999999999999999
Q ss_pred EEeccCCc---------------eEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 283 VLVGHQGI---------------ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 283 ~l~~H~~~---------------VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
.+..+... |.+++|+++ ..+++++.+|.|++||+....... .+..|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~i~~~d~~~~~~~~------------~~~~~~~ 248 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD-----DKFVIPGPKGAIFVYQITEKTPTG------------KLIGHHG 248 (425)
T ss_dssp EECCC---------------CCCBSCCEEEET-----TEEEEECGGGCEEEEETTCSSCSE------------EECCCSS
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCC-----CEEEEEcCCCeEEEEEcCCCceee------------eeccCCC
Confidence 99888776 999999986 469999999999999998763322 2235668
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEE
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 427 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~ 427 (1407)
.|.+++|+|++.+|++++.|+.|++||+.. ...+..+..|...|.+++|+|++ +|++++.||.|++||+.+++...
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 324 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGN---GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA 324 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSS---BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCC---CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE
Confidence 899999999999999999999999999943 34456677899999999999999 99999999999999998877544
Q ss_pred eeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--------------------eEEE
Q psy6522 428 IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD--------------------LVQV 487 (1407)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~--------------------~l~~ 487 (1407)
.. ..+...|.+++|+|++.+|++++. ||.|++||+.+++ ++..
T Consensus 325 ~~----------------~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 325 LS----------------IVDGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS 387 (425)
T ss_dssp EE----------------ECTTCCEEEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEE
T ss_pred ec----------------ccCCccEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhh
Confidence 32 235678999999999999999998 9999999999888 8999
Q ss_pred EecCCC--CeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 488 LKGHTN--EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 488 l~gH~~--~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
+.+|.. .|++++|+| ++.+|++++.||.|+|||+.
T Consensus 388 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccC-CCceEEEEecCceEEEEeec
Confidence 999977 999999999 99999999999999999985
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=339.22 Aligned_cols=332 Identities=20% Similarity=0.306 Sum_probs=267.5
Q ss_pred CCeEEEEEcCCCC-EEEEE----------ECCCeEEEEeCCCCc---eEEEEeccCCceEEEEeccCCCCCceEEEEEec
Q psy6522 247 GEISDIAIDNRNI-LLAAG----------TVDKTIRIWNLQTLA---PISVLVGHQGIITGVNFCPLEVNGFNYLASTST 312 (1407)
Q Consensus 247 ~~ItsLafSpDg~-lLaSg----------s~DGtIrVWDl~tg~---~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~ 312 (1407)
..|.+++|+|+++ +|++| +.|+.|+|||+.++. ++..+ .|...|++++|+|++ .+|++++.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~----~~l~~~~~ 87 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN----KIIAGALD 87 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS----SCEEEEES
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC----CeEEEEcc
Confidence 3688999999987 99999 889999999999876 33333 688999999999976 89999999
Q ss_pred CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC-CceEEEeeCCceEEEEeccCCC------CCceeE
Q psy6522 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVD------SPLGIL 385 (1407)
Q Consensus 313 DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~------~~~~i~ 385 (1407)
||.|++|++....... .....+..|...|.+++|+|+ +.+|++++.|+.|++||+.... ....+.
T Consensus 88 dg~v~vw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 88 NGSLELYSTNEANNAI--------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp SSCEEEECCSSTTSCC--------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred CCeEEEeecccccccc--------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 9999999998731111 112234467789999999998 8999999999999999996544 223333
Q ss_pred EEeecCCCcceEEEcCC-CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCC-CE
Q psy6522 386 EVEEHSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RW 463 (1407)
Q Consensus 386 ~l~~h~~~V~sIafSpd-g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg-~~ 463 (1407)
.+..|...|.+++|+|+ +.+|++++.||.|++||+.+++........ .....+...|.+++|+|++ .+
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT----------SPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC----------CCSSCCCCCEEEEEECSSCTTE
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc----------ccccccCCceEEEEECCCCCCE
Confidence 45679999999999999 789999999999999999988755432110 0112346789999999998 57
Q ss_pred EEEEEecCC---eEEEEECCCC-ceEEEEe-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeec
Q psy6522 464 VITAINFNF---QIKIWDAFNG-DLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE 538 (1407)
Q Consensus 464 Lasgs~~DG---~I~IWDl~tg-~~l~~l~-gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~ 538 (1407)
|++++. |+ .|++||+.++ .++..+. +|...|++++|+|.++.+|++++.||.|+|||+.++ ..+..+.
T Consensus 230 l~~~~~-d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~---- 302 (416)
T 2pm9_A 230 VATATG-SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFP---- 302 (416)
T ss_dssp EEEEEC-CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--CEEEEEE----
T ss_pred EEEEEC-CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--ccceeec----
Confidence 777776 88 9999999986 6778888 999999999999978899999999999999999988 6666665
Q ss_pred CCCCCceeEEEECCCC-CEEEEEeCCCeEEEEEcCCCcccccc-------------------------------------
Q psy6522 539 GQGEGALFDGKWSPDG-TTCALTDSYGHLLVYGLGGFKRPQNI------------------------------------- 580 (1407)
Q Consensus 539 g~~~~~I~slafSpDG-~~LAsgs~DG~I~Iwdl~sg~~~~~l------------------------------------- 580 (1407)
.+...|.+++|+|++ .+|++++.||.|+||++.++......
T Consensus 303 -~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 303 -ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp -CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred -CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 456789999999999 89999999999999999887643221
Q ss_pred ----CCceEecCCCcEEEecC-CCeeeEeeCCCC
Q psy6522 581 ----PRELFFHTDYRTLNRPN-GLFEPTYDEVTN 609 (1407)
Q Consensus 581 ----p~~v~Fs~D~~~Lv~~~-~~~~~v~Dv~T~ 609 (1407)
...+.|++|++.|+... .+.+.+||+.+.
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 12678999999888544 455668988764
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=5.7e-34 Score=345.80 Aligned_cols=313 Identities=13% Similarity=0.117 Sum_probs=237.0
Q ss_pred eeEEEEEcCCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcE--EEEEeCCCCCeEEEEEcC-CCCEEEEEECCCe
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKL--LATLRGCSGEISDIAIDN-RNILLAAGTVDKT 269 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSp-dG~~LaTGS~DG~V~IWDl~tg~~--l~tl~gH~~~ItsLafSp-Dg~lLaSgs~DGt 269 (1407)
+.+.....+|...|+||+|+| ++++||+|+.||.|+|||+.++.. +..+.+|.+.|++|+|+| ++.+|++|+.||+
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 444556778999999999999 567999999999999999987754 445568999999999998 6889999999999
Q ss_pred EEEEeCCCCceEEEEecc--CCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 270 IRIWNLQTLAPISVLVGH--QGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 270 IrVWDl~tg~~v~~l~~H--~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
|+|||+.++........| ...+.+++|+|++ .+|++|+.||.|++||+.... ...+..|..
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~g~~dg~i~~wd~~~~~-------------~~~~~~h~~ 251 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASS----RMVVTGDNVGNVILLNMDGKE-------------LWNLRMHKK 251 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTT----TEEEEECSSSBEEEEESSSCB-------------CCCSBCCSS
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCC----CEEEEEeCCCcEeeeccCcce-------------eEEEecccc
Confidence 999999876544443333 3467899999976 899999999999999986431 122346778
Q ss_pred ceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceE
Q psy6522 348 HILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWR 426 (1407)
Q Consensus 348 ~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~ 426 (1407)
.|.+++|+|++. +|++|+.|+.|+|||+........+....+|...|++++|+|++.+|++++.||+|+|||+.++...
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 999999999876 7889999999999999655544445556789999999999999999999999999999999987755
Q ss_pred EeeeccCcCCCC-CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEE-EEecC
Q psy6522 427 FIRLDMNTCLPH-TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVL-ESHPF 503 (1407)
Q Consensus 427 ~~~l~~~~~~~~-~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~-gH~~~V~sL-afsP~ 503 (1407)
............ .............+..+.+++++..+++++..++.|++||..+++++..+. +|...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp- 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP- 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-
Confidence 433211110000 000000011122233344444544444444435689999999999988875 678888887 6999
Q ss_pred CCCEEEEEeCCCcEEEEECCCC
Q psy6522 504 DSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 504 dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
++.+|++|+ |++|+||++.++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999998876 889999999887
No 62
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-32 Score=326.48 Aligned_cols=303 Identities=17% Similarity=0.218 Sum_probs=245.4
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCceEEEEe--ccCCceEEEEecc-CCCCCce
Q psy6522 230 LWRARDGKLLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCP-LEVNGFN 305 (1407)
Q Consensus 230 IWDl~tg~~l~tl~gH~~~ItsLafSpDg-~lLaSgs~DGtIrVWDl~tg~~v~~l~--~H~~~VtsLafsp-d~~~~~~ 305 (1407)
+|++.+..+...+.+|...|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++ .
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~ 132 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT----N 132 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE----E
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC----C
Confidence 44556677788899999999999999999 999999999999999999988887776 6999999999999 44 8
Q ss_pred EEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeE
Q psy6522 306 YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL 385 (1407)
Q Consensus 306 ~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~ 385 (1407)
+|++++.|+.|++||+... ..... .....+...|.+++|+|++.+|++|+.|+.|++||+. ...+.
T Consensus 133 ~l~s~~~d~~i~iwd~~~~-~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~ 198 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGS-VIQVF---------AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEIF 198 (383)
T ss_dssp EEEEEETTTEEEEEETTSC-EEEEE---------ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEEE
T ss_pred EEEEEeCCCEEEEEECCCC-ceEEE---------eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEEE
Confidence 9999999999999999853 11111 1112345779999999999999999999999999983 34567
Q ss_pred EEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC-CCCE
Q psy6522 386 EVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRW 463 (1407)
Q Consensus 386 ~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp-dg~~ 463 (1407)
.+..|...|.+++|+|++. +|++++.||.|++||+.+..... .......+...|.+++|+| ++.+
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~~ 265 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN-------------SYIAEMPHEKPVNAAYFNPTDSTK 265 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT-------------CEEEEEECSSCEEEEEECTTTSCE
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc-------------ceEEEecCCCceEEEEEcCCCCCE
Confidence 7889999999999999999 99999999999999998732100 0001113678999999999 9999
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEecCC-----------------CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q psy6522 464 VITAINFNFQIKIWDAFNGDLVQVLKGHT-----------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526 (1407)
Q Consensus 464 Lasgs~~DG~I~IWDl~tg~~l~~l~gH~-----------------~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk 526 (1407)
|++++. |+.|++||+.+++.+..+.+|. +.+..++|+| ++.+ +|+.||.|+|||+.++
T Consensus 266 l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~- 340 (383)
T 3ei3_B 266 LLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSG- 340 (383)
T ss_dssp EEEEES-SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTC-
T ss_pred EEEEcC-CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCC-
Confidence 999998 9999999999998877777653 2344456666 5555 7778999999999988
Q ss_pred ccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 527 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 527 ~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
..+..+. ...+...+..++|+|+|++|++++ ||.|+||++.+
T Consensus 341 -~~~~~l~---~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 -GLVHQLR---DPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp -CEEEEEC---BTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred -ceeeeec---CCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 6555554 112345677779999999999997 89999999875
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.5e-33 Score=325.41 Aligned_cols=307 Identities=17% Similarity=0.234 Sum_probs=246.1
Q ss_pred EEEcCCCCCEEEEEEcCC----CCEEEEEECCCeEEEEEcCCCcEEEEEeC-----CCCCeEEEEEcCC----CCEEEEE
Q psy6522 198 YVNLGHLSAVFCVLFDKL----GEVIVTGADDLLIKLWRARDGKLLATLRG-----CSGEISDIAIDNR----NILLAAG 264 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpd----G~~LaTGS~DG~V~IWDl~tg~~l~tl~g-----H~~~ItsLafSpD----g~lLaSg 264 (1407)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344599999999999984 45666666677999999998888777764 5578999999999 6799999
Q ss_pred ECCCeEEEEeCCCCceEEEEeccCCceEEEEecc-CCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccC
Q psy6522 265 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCP-LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIR 343 (1407)
Q Consensus 265 s~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafsp-d~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~ 343 (1407)
+.||.|+|||+.+++.+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.++...... ..+.
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~ 158 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP----NLLLSVSKDHALRLWNIQTDTLVAIF---------GGVE 158 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT----TEEEEEETTSCEEEEETTTTEEEEEE---------CSTT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC----CEEEEEeCCCeEEEEEeecCeEEEEe---------cccc
Confidence 9999999999999999999999999999999999 55 89999999999999999876332221 1124
Q ss_pred CCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC-------------------------ceeEEEeecCCCcceEE
Q psy6522 344 PGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------------------------LGILEVEEHSDKVDSIQ 398 (1407)
Q Consensus 344 ~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~-------------------------~~i~~l~~h~~~V~sIa 398 (1407)
.|...|.+++|+|++.+|++++.||.|++||+...... ........|...|.+++
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 56789999999999999999999999999998532110 01122334899999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC--CCEEEEEEecCCeEEE
Q psy6522 399 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAINFNFQIKI 476 (1407)
Q Consensus 399 fSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd--g~~Lasgs~~DG~I~I 476 (1407)
|+ +.+|++++.||.|++||+.++........ ..............+...|.+++|+|+ +.+|++++. ||.|++
T Consensus 239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~v 313 (366)
T 3k26_A 239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ-VGKLYV 313 (366)
T ss_dssp EE--TTEEEEECSSSEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT-TSCEEE
T ss_pred Ec--CCEEEEEecCCEEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec-CCcEEE
Confidence 99 67999999999999999987653211100 000001112223456677889999999 999999988 999999
Q ss_pred EECCCCc----eEEEEecC--CCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 477 WDAFNGD----LVQVLKGH--TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 477 WDl~tg~----~l~~l~gH--~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
||+.+++ .+..+.+| ...|++++|+| ++++|++++.||.|+|||+.
T Consensus 314 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 314 WDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 9999875 45578888 78999999999 99999999999999999985
No 64
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-32 Score=308.99 Aligned_cols=295 Identities=18% Similarity=0.199 Sum_probs=251.2
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc
Q psy6522 236 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315 (1407)
Q Consensus 236 g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt 315 (1407)
.+++.++.+|.+.|++++| +++.+|++|+.||.|+|||+.++.....+..|...|.+++|+|++ .+|++++.||.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 82 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK----ELLLFGGKDTM 82 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT----TEEEEEETTSC
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC----CEEEEecCCCe
Confidence 3778899999999999999 999999999999999999999999999999999999999999976 89999999999
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcc
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVD 395 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~ 395 (1407)
|++|++....... ....+..|...|.+++| ++.+|++++.|+.|++||. ...+..+..|...|.
T Consensus 83 i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-----~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 83 INGVPLFATSGED---------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-----GSLVYNLQAHNASVW 146 (313)
T ss_dssp EEEEETTCCTTSC---------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-----TEEEEEEECCSSCEE
T ss_pred EEEEEeeecCCCC---------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-----CcEEEecccCCCcee
Confidence 9999987652211 12234567789999999 5779999999999999993 345667788999999
Q ss_pred eEEEcC-CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy6522 396 SIQWSH-SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 474 (1407)
Q Consensus 396 sIafSp-dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I 474 (1407)
+++|++ ++.+|++++.||.|++||.. ...... ...+...+.+++|++++. +++++. ||.|
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~---------------~~~~~~~i~~~~~~~~~~-~~~~~~-dg~i 207 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND--KVIKTF---------------SGIHNDVVRHLAVVDDGH-FISCSN-DGLI 207 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT--EEEEEE---------------CSSCSSCEEEEEEEETTE-EEEEET-TSEE
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC--ceEEEE---------------eccCcccEEEEEEcCCCe-EEEccC-CCeE
Confidence 999988 89999999999999999933 211111 122677899999999998 777777 9999
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 475 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 475 ~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
++||+.+++++..+.+|...|++++|+| ++ .|++++.||.|++||+.++ ..+..+. .+...|.+++|+|++
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~--~~~~~~~-----~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENG--SLKQVIT-----LPAISIWSVDCMSNG 278 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTC--CEEEEEE-----CSSSCEEEEEECTTS
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCC--ceeEEEe-----ccCceEEEEEEccCC
Confidence 9999999999999999999999999999 77 5999999999999999998 6666655 356789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 555 TTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 555 ~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
+ |++++.||.|++|++.+++.....
T Consensus 279 ~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 279 D-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp C-EEEEETTSCEEEEESCGGGCCC--
T ss_pred C-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9 667999999999999988765443
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-34 Score=336.51 Aligned_cols=296 Identities=16% Similarity=0.175 Sum_probs=230.3
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q psy6522 199 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 276 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg--~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~ 276 (1407)
.+..|.++|+|++|+|+|++||+|+.|+.|+|||+.++ +++..+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999998 7888999999999999999999999999999999999999
Q ss_pred CCc---eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCC-CCcceEEE
Q psy6522 277 TLA---PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCS 352 (1407)
Q Consensus 277 tg~---~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~-h~~~I~~v 352 (1407)
++. ....+.+|...|.+++|+|++ .+|++++.|+.|++||+....... ....+.. |...|.++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE----DKFAVGSGARVISVCYFEQENDWW---------VSKHLKRPLRSTILSL 152 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS----SCCEEEESSSCEEECCC-----CC---------CCEEECSSCCSCEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC----CEEEEEecCCeEEEEEECCcccce---------eeeEeecccCCCeEEE
Confidence 877 677888999999999999976 899999999999999998763210 1111223 67899999
Q ss_pred EECCCCceEEEeeCCceEEEEeccCCC---------------CCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEE
Q psy6522 353 SFSPGGLFLATGSGDHHVRVYKMDGVD---------------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417 (1407)
Q Consensus 353 afSpdg~~Lasgs~DG~I~IwDl~~~~---------------~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~I 417 (1407)
+|+|++.+|++++.|+.|++||+.... ....+..+ .|...|.+++|+|++.+|++++.||.|++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999984221 12233344 89999999999999999999999999999
Q ss_pred EEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc--------------
Q psy6522 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD-------------- 483 (1407)
Q Consensus 418 WDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~-------------- 483 (1407)
||+.++..... .......+...|.+++|+|++++|++++. ++.+ +|+.....
T Consensus 232 wd~~~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 297 (377)
T 3dwl_C 232 AYPSAPEQPPR------------ALITVKLSQLPLRSLLWANESAIVAAGYN-YSPI-LLQGNESGWAHTRDLDAGTSKT 297 (377)
T ss_dssp CEECSTTSCEE------------ECCCEECSSSCEEEEEEEETTEEEEEESS-SSEE-EECCCC---CCSBCCCSCCCCC
T ss_pred EECCCCCCcce------------eeEeecCCCCceEEEEEcCCCCEEEEEcC-CcEE-EEEeCCCceEEEeeeccccccc
Confidence 99998763110 01223457788999999999999988864 5555 67654211
Q ss_pred ----------------eE------EEE----------------ecCCCCeEEEEEecCCCC---EEEEEeCCCcEEEEEC
Q psy6522 484 ----------------LV------QVL----------------KGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 484 ----------------~l------~~l----------------~gH~~~V~sLafsP~dg~---~LaSgs~DG~V~IWDi 522 (1407)
.+ ..+ ..|.+.|+++++.+.++. .|+|||.||.|+|||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 298 SFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 111 139999999998773444 7999999999999985
No 66
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.6e-32 Score=315.11 Aligned_cols=315 Identities=18% Similarity=0.236 Sum_probs=236.9
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC----cEEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q psy6522 198 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIR 271 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg----~~l~tl~gH~~~ItsLafSp--Dg~lLaSgs~DGtIr 271 (1407)
..+.||.+.|+||+|+|++++||+|+.||.|+|||+.++ +.+..+.+|...|++++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 467899999999999999999999999999999999876 57788899999999999999 699999999999999
Q ss_pred EEeCCCC---------ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccc-cccc
Q psy6522 272 IWNLQTL---------APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNER 341 (1407)
Q Consensus 272 VWDl~tg---------~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~-~~~~ 341 (1407)
|||+.++ +.+..+..|...|.+++|+|+. .+.+|++++.||.|++||+.+.............. ....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH--LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC--CCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999877 5678888999999999999971 13899999999999999998876554433221111 1112
Q ss_pred cCCCCcceEEEEECCC---CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCC----CEEEEEeCCCe
Q psy6522 342 IRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGSRDGT 414 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpd---g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg----~~LaSgs~DGt 414 (1407)
...+...+.+++|+|+ +.+|++++.++.+.+|+. .......+..+.+|...|.+++|+|++ .+|++|+.||.
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC-TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc-CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 2356688999999997 899999999999977776 334444567788899999999999998 79999999999
Q ss_pred EEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCeEEEEECCCCceEEEEecC
Q psy6522 415 ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQIKIWDAFNGDLVQVLKGH 491 (1407)
Q Consensus 415 I~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~---~DG~I~IWDl~tg~~l~~l~gH 491 (1407)
|++||+..+....... .....+....+++....+..+.. ....+.+|+....+++..+.+|
T Consensus 242 i~iwd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 242 IRIFKITEKLSPLASE----------------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp EEEEEEEECC-------------------------------------------------------CCSEEEEEEEEECTT
T ss_pred EEEEeCCCCcCccccC----------------CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 9999998764322110 01111222222232222222221 1456677777778889999999
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeee
Q psy6522 492 TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 492 ~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
...|++++|+| ++.+|++|+.||.|+|||+.++ ..+..+.
T Consensus 306 ~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~--~~~~~~~ 345 (351)
T 3f3f_A 306 NGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYS--NEFKCMS 345 (351)
T ss_dssp SSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT--SCEEEEE
T ss_pred cccEEEEEEcC-CCCEEEEecCCCcEEEEecCcC--cchhhee
Confidence 99999999999 9999999999999999999987 4444443
No 67
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.1e-32 Score=320.98 Aligned_cols=311 Identities=15% Similarity=0.145 Sum_probs=250.7
Q ss_pred EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc------eEEEEeccCCceEEEEeccCCCCCc---eEEE
Q psy6522 238 LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA------PISVLVGHQGIITGVNFCPLEVNGF---NYLA 308 (1407)
Q Consensus 238 ~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~------~v~~l~~H~~~VtsLafspd~~~~~---~~La 308 (1407)
....+.+|.+.|++|+|+| ++|++|+.||.|+||++.++. .+..+.+|...|++++|+|+...++ .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4556789999999999999 799999999999999999887 7889999999999999999511125 7999
Q ss_pred EEecCCceeEEeeccccccceeeeccccccccccCCC-----CcceEEEEEC----CCCce-EEEeeCCceEEEEeccC-
Q psy6522 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG-----NAHILCSSFS----PGGLF-LATGSGDHHVRVYKMDG- 377 (1407)
Q Consensus 309 Sgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h-----~~~I~~vafS----pdg~~-Lasgs~DG~I~IwDl~~- 377 (1407)
+++.||.|++|++.+........ ...+..| ...|.+++|+ |++.+ |++++.||.|++||+..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVI-------FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEE-------EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred EEcCCCCEEEEEccCCccccccc-------ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 99999999999998774311100 1122233 4789999999 99999 99999999999999964
Q ss_pred -----CCCCc--eeEEE-------eecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccc
Q psy6522 378 -----VDSPL--GILEV-------EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 443 (1407)
Q Consensus 378 -----~~~~~--~i~~l-------~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~ 443 (1407)
..... ....+ ..|...|.+++|+|++ +|++++.||.|++||+.+++.......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------------ 225 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES------------ 225 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC------------
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec------------
Confidence 22211 11144 4488999999999999 999999999999999998765443210
Q ss_pred ccccc---cccEEEEEECCCCCEEEEEEecC---CeEEEEECCCCceEEEEec-------------CCCCeEEEEEecCC
Q psy6522 444 DETNK---KIKVTMVAWDASDRWVITAINFN---FQIKIWDAFNGDLVQVLKG-------------HTNEVFVLESHPFD 504 (1407)
Q Consensus 444 ~~~~~---~~~VtslafSpdg~~Lasgs~~D---G~I~IWDl~tg~~l~~l~g-------------H~~~V~sLafsP~d 504 (1407)
...| ...|.+++|+|++.+|++++. | +.|++||+.+++++..+.+ |...|.+++|+| +
T Consensus 226 -~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 302 (397)
T 1sq9_A 226 -QHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-S 302 (397)
T ss_dssp -CC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-S
T ss_pred -cccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-C
Confidence 0124 678999999999999999998 8 9999999999999999999 999999999999 9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccceeeeeeeecC-CC---------------CCceeEEEECCCC----------CEEE
Q psy6522 505 SRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG-QG---------------EGALFDGKWSPDG----------TTCA 558 (1407)
Q Consensus 505 g~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g-~~---------------~~~I~slafSpDG----------~~LA 558 (1407)
+.+|++++.||.|+|||+.++ ..+..+...... .+ ...|.+++|+|+| ++|+
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~ 380 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLC 380 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCC--ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEE
Confidence 999999999999999999988 666655411100 12 6789999999999 7999
Q ss_pred EEeCCCeEEEEEcCCCc
Q psy6522 559 LTDSYGHLLVYGLGGFK 575 (1407)
Q Consensus 559 sgs~DG~I~Iwdl~sg~ 575 (1407)
+++.||.|++|++.+|+
T Consensus 381 s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 381 CVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEETTTEEEEEEEEC--
T ss_pred EecCCCcEEEEEcCCCC
Confidence 99999999999998864
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-32 Score=320.08 Aligned_cols=318 Identities=15% Similarity=0.126 Sum_probs=250.6
Q ss_pred EeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEE
Q psy6522 242 LRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFW 319 (1407)
Q Consensus 242 l~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vW 319 (1407)
+..|...|++++|+|++++|++|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++ .+|++++.||.|++|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS----NRIVTCGTDRNAYVW 79 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT----TEEEEEETTSCEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC----CEEEEEcCCCeEEEE
Confidence 45699999999999999999999999999999999887 888999999999999999976 899999999999999
Q ss_pred eeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEE-EeecCCCcceEE
Q psy6522 320 KYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQ 398 (1407)
Q Consensus 320 Dl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~-l~~h~~~V~sIa 398 (1407)
|+.++...... ....|...|.+++|+|++.+|++++.|+.|++||+........... ...|...|.+++
T Consensus 80 d~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (372)
T 1k8k_C 80 TLKGRTWKPTL----------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD 149 (372)
T ss_dssp EEETTEEEEEE----------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred ECCCCeeeeeE----------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence 99776322111 1234568899999999999999999999999999965443222233 356889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCceEEeee--ccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy6522 399 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL--DMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 476 (1407)
Q Consensus 399 fSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~I 476 (1407)
|+|++.+|++++.||.|++||+.......... .................+...|.+++|+|++.+|++++. |+.|++
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i 228 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCL 228 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC-CCEEEE
Confidence 99999999999999999999975322100000 000000011122223357788999999999999999998 999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC--CCccceeeee--------------------
Q psy6522 477 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS--SKQRGYKWFH-------------------- 534 (1407)
Q Consensus 477 WDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s--gk~~~l~~~~-------------------- 534 (1407)
||+.+++++..+..|...|.+++|+| ++.+|++| .||.|++|++.+ ++...+..+.
T Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 229 ADADKKMAVATLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred EECCCCceeEEEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 99999999999999999999999999 88887777 999999999987 4111110000
Q ss_pred ------------eeecCCCCCceeEEEEC-CCC---CEEEEEeCCCeEEEEEcCCCcc
Q psy6522 535 ------------NIVEGQGEGALFDGKWS-PDG---TTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 535 ------------~~~~g~~~~~I~slafS-pDG---~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
..+...|...|++++|+ ++| .+|++++.||.|++|++.+++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 307 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 11223567899999966 677 9999999999999999987654
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-32 Score=327.10 Aligned_cols=283 Identities=21% Similarity=0.327 Sum_probs=243.1
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 283 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~--gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~ 283 (1407)
.+++|+||++ ++||+|. |++|+|||+.+++++..+. +|...|++|+|+|+|++||+|+.||+|+|||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3568999975 5888876 8999999999999888765 6778899999999999999999999999999999999999
Q ss_pred EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE
Q psy6522 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 363 (1407)
Q Consensus 284 l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las 363 (1407)
+.+|...|.++.|++ .+|++|+.|+.+++||........ ..+..|...+.++.|+|++.+|++
T Consensus 185 ~~~h~~~v~~~s~~~------~~l~sgs~d~~i~~~d~~~~~~~~-----------~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 185 MTSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHHV-----------ATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp ECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCEE-----------EEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeCCCCceEEEeeCC------CEEEEEeCCCceeEeeecccceee-----------EEecccccceeeeeecCCCCeeee
Confidence 999999999999876 799999999999999987653221 223456788999999999999999
Q ss_pred eeCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCCC-EEEE--EeCCCeEEEEEccCCceEEeeeccCcCCCCC
Q psy6522 364 GSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHL-RFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHT 439 (1407)
Q Consensus 364 gs~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg~-~LaS--gs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~ 439 (1407)
++.|+.|++|++..... ...+.....|...|.+++|+|.+. +|++ |+.|++|++||+.++.+....
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---------- 317 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------- 317 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----------
T ss_pred eeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----------
Confidence 99999999999954332 234556778999999999999765 4554 457999999999998765432
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEE
Q psy6522 440 KETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLII 518 (1407)
Q Consensus 440 ~~~~~~~~~~~~VtslafSpdg~~Lasgs~-~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~ 518 (1407)
.....+.++.|++++..+++++. .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+||+.||+|+
T Consensus 318 -------~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvr 389 (420)
T 4gga_A 318 -------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLR 389 (420)
T ss_dssp -------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEE
T ss_pred -------ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEE
Confidence 13456889999999999988763 389999999999999999999999999999999 999999999999999
Q ss_pred EEECCCC
Q psy6522 519 IWDILSS 525 (1407)
Q Consensus 519 IWDi~sg 525 (1407)
|||+...
T Consensus 390 iWdv~~~ 396 (420)
T 4gga_A 390 LWRCFEL 396 (420)
T ss_dssp EECCSCS
T ss_pred EEECCCC
Confidence 9999766
No 70
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=332.28 Aligned_cols=307 Identities=13% Similarity=0.145 Sum_probs=248.4
Q ss_pred eeEEEEE-cCCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCC---Cc---EEEEEeCCCCCeEEEEEcCCCCEEEEEE
Q psy6522 194 LRQHYVN-LGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARD---GK---LLATLRGCSGEISDIAIDNRNILLAAGT 265 (1407)
Q Consensus 194 ~~~~~~L-~GH~~~V~~vafSp-dG~~LaTGS~DG~V~IWDl~t---g~---~l~tl~gH~~~ItsLafSpDg~lLaSgs 265 (1407)
.+++..+ .+|.+.|+|++|+| ++++||+|+.||+|+|||+.+ +. ....+ +|...|++|+|+|++.+|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 4566777 89999999999999 999999999999999999877 43 33444 4999999999999999999999
Q ss_pred CCCeEEEEeCC---CCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccccc
Q psy6522 266 VDKTIRIWNLQ---TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 266 ~DGtIrVWDl~---tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
.||+|+|||+. +++.+..+..| .|..+.|+|.+
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------------------ 166 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------------------ 166 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------------------
T ss_pred CCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------------------------------------------
Confidence 99999999994 67777777666 67777777631
Q ss_pred CCCCcceEEEE--ECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee--cCCCcceEEEcCCCCEEEEEeCCCeEEEE
Q psy6522 343 RPGNAHILCSS--FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGSRDGTALIW 418 (1407)
Q Consensus 343 ~~h~~~I~~va--fSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~--h~~~V~sIafSpdg~~LaSgs~DGtI~IW 418 (1407)
+...+.++. +++++.+|++|+.|+.|++||+. ....+..+.. |.+.|.+++|+|++.+|++|+.||.|++|
T Consensus 167 --~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 167 --KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR---TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW 241 (437)
T ss_dssp --SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT---TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred --cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC---CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 113345555 67899999999999999999994 3445666666 89999999999999999999999999999
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEEC----CCCCEEEEEEecCCeEEEEECCCCceEEEEecC---
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD----ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH--- 491 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS----pdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH--- 491 (1407)
|+++++...... ..+...|.+++|+ +++.+|++++. ||.|+|||+.+++++..+.+|
T Consensus 242 d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 242 DIRFNVLIRSWS---------------FGDHAPITHVEVCQFYGKNSVIVVGGSS-KTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp ETTTTEEEEEEB---------------CTTCEEEEEEEECTTTCTTEEEEEEEST-TEEEEEEETTTTEEEEEEESSSSC
T ss_pred EcCCccEEEEEe---------------cCCCCceEEEEeccccCCCccEEEEEcC-CCcEEEEEcCCCcEEEEEEcCCCC
Confidence 999876544221 1355689999665 56778888887 999999999999998888754
Q ss_pred -----------------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeee------------
Q psy6522 492 -----------------------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNI------------ 536 (1407)
Q Consensus 492 -----------------------~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~------------ 536 (1407)
...|++++|+ ++.+|++|+.||.|++||+.++ ..+..+...
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~ 381 (437)
T 3gre_A 306 PSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNEL--SSSKAVISPSRFSDVFIPTQV 381 (437)
T ss_dssp CCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCG--GGCEEEECC--CCCEEEEEEE
T ss_pred CccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCc--ccceEEecccccCceEEEEEe
Confidence 4457888888 4589999999999999999988 555444310
Q ss_pred --------------------ecCCCCCceeEEEECCC--CCEEEEEeCCCeEEEEE
Q psy6522 537 --------------------VEGQGEGALFDGKWSPD--GTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 537 --------------------~~g~~~~~I~slafSpD--G~~LAsgs~DG~I~Iwd 570 (1407)
....|...|++++|+++ +.+|++++.||.|+||+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 382 TANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00126788999999998 78999999999999994
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=305.35 Aligned_cols=282 Identities=21% Similarity=0.323 Sum_probs=239.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~--gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
+.+|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++|+|+|++++||+|+.||+|+||++.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4689999886 777775 8999999999999988775 67788999999999999999999999999999999999999
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg 364 (1407)
.+|...+.++.+.+ ..|++++.++.+++|+........ ..+..|...+.++.+++++.+|+++
T Consensus 106 ~~h~~~~~~~~~~~------~~l~s~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 106 TSHSARVGSLSWNS------YILSSGSRSGHIHHHDVRVAEHHV-----------ATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp ECCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCEE-----------EEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cCccceEEEeecCC------CEEEEEecCCceEeeecCCCceeE-----------EEEcCccCceEEEEEcCCCCEEEEE
Confidence 99999998887765 799999999999999987653221 2233566889999999999999999
Q ss_pred eCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCCCE---EEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCc
Q psy6522 365 SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLR---FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg~~---LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~ 440 (1407)
+.|+.|++||+..... .........|.+.|.++++++++.. +++++.+++|++||..........
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----------- 237 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------- 237 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-----------
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-----------
Confidence 9999999999964332 2334456678889999999998763 346678899999999877644322
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q psy6522 441 ETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIII 519 (1407)
Q Consensus 441 ~~~~~~~~~~~VtslafSpdg~~Lasgs~-~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~I 519 (1407)
.+...+..++|++++..+++++. .|+.|+|||+.+++++..+.+|.+.|++|+|+| ++.+|+|||.||+|+|
T Consensus 238 ------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 238 ------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRL 310 (318)
T ss_dssp ------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEE
T ss_pred ------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEE
Confidence 25567889999999999887763 489999999999999999999999999999999 9999999999999999
Q ss_pred EECCCC
Q psy6522 520 WDILSS 525 (1407)
Q Consensus 520 WDi~sg 525 (1407)
||+...
T Consensus 311 Wd~~~~ 316 (318)
T 4ggc_A 311 WRCFEL 316 (318)
T ss_dssp ECCSCC
T ss_pred EECCCC
Confidence 999764
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-31 Score=321.15 Aligned_cols=289 Identities=17% Similarity=0.313 Sum_probs=243.7
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q psy6522 199 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~g-H~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t 277 (1407)
...+|...+++.++++++..+++++.||.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|+|||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3457777655444444445688888999999999999999888876 889999999999999999999999999999999
Q ss_pred CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC
Q psy6522 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357 (1407)
Q Consensus 278 g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd 357 (1407)
++.+..+.+|...|.+++|.+ .+|++++.||.|++||+...... ...+..|...|.+++|+|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~ 228 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRIANHQ-----------IGTLQGHSSEVCGLAWRSD 228 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTSSSCE-----------EEEEECCSSCEEEEEECTT
T ss_pred CeEEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEecccCcce-----------eeEEcCCCCCeeEEEEcCC
Confidence 999999999999999999965 79999999999999999854221 1223456789999999999
Q ss_pred CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEe--CCCeEEEEEccCCceEEeeeccCc
Q psy6522 358 GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGS--RDGTALIWYYKCSQWRFIRLDMNT 434 (1407)
Q Consensus 358 g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs--~DGtI~IWDl~t~~~~~~~l~~~~ 434 (1407)
+.+|++|+.|+.|++||+. ....+..+..|...|.+++|+|++. ++++++ .||.|++||+.+++.....
T Consensus 229 ~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----- 300 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV----- 300 (401)
T ss_dssp SSEEEEEETTSCEEEEETT---CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-----
T ss_pred CCEEEEEeCCCeEEEccCC---CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-----
Confidence 9999999999999999994 3455667788999999999999775 566655 7999999999988754432
Q ss_pred CCCCCccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEE--EEecCCCCeEEEEEecCCCCEEEEE
Q psy6522 435 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQ--VLKGHTNEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 435 ~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~-~DG~I~IWDl~tg~~l~--~l~gH~~~V~sLafsP~dg~~LaSg 511 (1407)
.+...|.+++|+|++.+|+++++ .||.|+|||+.++.... .+.+|...|.+++|+| ++.+|+++
T Consensus 301 ------------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 301 ------------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ------------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ------------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 13457999999999999999651 39999999999876544 4679999999999999 99999999
Q ss_pred eCCCcEEEEECCCC
Q psy6522 512 GHDGLIIIWDILSS 525 (1407)
Q Consensus 512 s~DG~V~IWDi~sg 525 (1407)
+.||.|+||++.++
T Consensus 368 ~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 368 ASDENLKFWRVYDG 381 (401)
T ss_dssp CTTSEEEEEECCC-
T ss_pred eCCCcEEEEECCCC
Confidence 99999999999988
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=346.87 Aligned_cols=309 Identities=11% Similarity=0.062 Sum_probs=228.1
Q ss_pred EEEEEECCCeEEEEEcCCCcEE----EEEeCCCCCeEEEEEcCC------CCEEEEEECCCeEEEEeCCCCc--------
Q psy6522 218 VIVTGADDLLIKLWRARDGKLL----ATLRGCSGEISDIAIDNR------NILLAAGTVDKTIRIWNLQTLA-------- 279 (1407)
Q Consensus 218 ~LaTGS~DG~V~IWDl~tg~~l----~tl~gH~~~ItsLafSpD------g~lLaSgs~DGtIrVWDl~tg~-------- 279 (1407)
+|++|+.|++|+|||+.++++. .++.+|.+.|.+|+|+|+ +.+||+|+.||+|+|||+.++.
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 3444567899999999887642 456778899999999997 5799999999999999997653
Q ss_pred ---eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEE--EE
Q psy6522 280 ---PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS--SF 354 (1407)
Q Consensus 280 ---~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~v--af 354 (1407)
+...+.+|...|++++|++. ..|++|+.||+|++||+.++.... ..+..|...|.++ +|
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-----~~lasgs~DgtV~lWD~~~~~~~~-----------~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-----TTVVCGFKNGFVAEFDLTDPEVPS-----------FYDQVHDSYILSVSTAY 318 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-----SEEEEEETTSEEEEEETTBCSSCS-----------EEEECSSSCEEEEEEEC
T ss_pred ecCceEEEEcCCCCEEEEEecCC-----CeEEEEeCCCEEEEEECCCCCCce-----------EEeecccccEEEEEEEc
Confidence 23477899999999999974 479999999999999998652111 1234577889999 57
Q ss_pred CCCC-ceEEEeeCCceEEEEeccCCCCCceeEEEeecCC--CcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeec
Q psy6522 355 SPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD--KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD 431 (1407)
Q Consensus 355 Spdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~--~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~ 431 (1407)
++++ .+||+|+.|++|+|||+.. ...+..+.+|.. .|.+++|+|++..|++++.|++|++||++++.+...
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~---~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--- 392 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKD---IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--- 392 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGG---HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE---
T ss_pred CCCCCeEEEEeccCCeEEEEECCC---CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee---
Confidence 8888 8999999999999999943 233344556653 589999999999999999999999999987664221
Q ss_pred cCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec-----CCCCeEEEEEecCCCC
Q psy6522 432 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-----HTNEVFVLESHPFDSR 506 (1407)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g-----H~~~V~sLafsP~dg~ 506 (1407)
..+|...|++++|+|++++|++++. ||+|+|||+..+ ++..++. +...|++++|+| ++.
T Consensus 393 -------------l~gH~~~V~sva~Sp~g~~l~Sgs~-Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~ 456 (524)
T 2j04_B 393 -------------LVSRETTITAIGVSRLHPMVLAGSA-DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDD 456 (524)
T ss_dssp -------------EEECSSCEEEEECCSSCCBCEEEET-TTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSC
T ss_pred -------------eecCCCceEEEEeCCCCCeEEEEEC-CCEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCC
Confidence 2347889999999999999999998 999999998654 2222111 112578999999 777
Q ss_pred EEEEEeCCCcEEEEECC-CCCccceeeeeeeecCCCCCceeEEEECCCC---CEEEEEeCCCeEEEEEcCCC
Q psy6522 507 VLLSAGHDGLIIIWDIL-SSKQRGYKWFHNIVEGQGEGALFDGKWSPDG---TTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 507 ~LaSgs~DG~V~IWDi~-sgk~~~l~~~~~~~~g~~~~~I~slafSpDG---~~LAsgs~DG~I~Iwdl~sg 574 (1407)
.+ .... .+.+|+.. ++ ..+..+. .+...|.+++|+|++ .+||+|+.+|.|+||++...
T Consensus 457 ~~-~~~~--~~~~~~~~~~g--~~~~~l~-----gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 457 KY-RIDS--SYEVYPLTVND--VSKAKID-----AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EE-EECC--CCCCCC--------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eE-EccC--CceecccccCC--cceeeec-----CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 44 2222 23344332 23 3333333 456899999999996 49999999999999998754
No 74
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.5e-32 Score=315.24 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=244.5
Q ss_pred EEeCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEeCCCCceEEEEec-----cCCceEEEEeccCCCCCceEEEEEe
Q psy6522 241 TLRGCSGEISDIAIDNR----NILLAAGTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpD----g~lLaSgs~DGtIrVWDl~tg~~v~~l~~-----H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
...+|.+.|++++|+|+ ..++++++.++.|+|||+.++..+..+.. |...|++++|+|+...++.+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 45666666678999999998888777764 5578999999998543458999999
Q ss_pred cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEE---
Q psy6522 312 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV--- 387 (1407)
Q Consensus 312 ~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l--- 387 (1407)
.||.|++||+.++.... .+..|...|.+++|+| ++.+|++|+.||.|++||+.. ...+..+
T Consensus 93 ~dg~i~v~d~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIK------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEE------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---TEEEEEECST
T ss_pred CCCEEEEEEchhceEee------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---CeEEEEeccc
Confidence 99999999998763322 2235678999999999 999999999999999999943 3444455
Q ss_pred eecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeec-----cCc-CC------CCCccccccccccccEEEE
Q psy6522 388 EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD-----MNT-CL------PHTKETSDETNKKIKVTMV 455 (1407)
Q Consensus 388 ~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~-----~~~-~~------~~~~~~~~~~~~~~~Vtsl 455 (1407)
..|...|.+++|+|++.+|++++.||.|++||+.+++....... ... .. ...........+...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 67999999999999999999999999999999987653221100 000 00 0000111123378889999
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCce--------------EEEEecCCCCeEEEEEecCC--CCEEEEEeCCCcEEE
Q psy6522 456 AWDASDRWVITAINFNFQIKIWDAFNGDL--------------VQVLKGHTNEVFVLESHPFD--SRVLLSAGHDGLIII 519 (1407)
Q Consensus 456 afSpdg~~Lasgs~~DG~I~IWDl~tg~~--------------l~~l~gH~~~V~sLafsP~d--g~~LaSgs~DG~V~I 519 (1407)
+|+ +.+|++++. |+.|++||+.++.. +..+.+|...|++++|+| + +.+|++|+.||.|+|
T Consensus 238 ~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 238 RWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp EEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEE
T ss_pred EEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEE
Confidence 998 778888888 99999999987644 888999999999999999 8 999999999999999
Q ss_pred EECCCCCccceeeeeeeecCC-CCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 520 WDILSSKQRGYKWFHNIVEGQ-GEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 520 WDi~sgk~~~l~~~~~~~~g~-~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
||+.++ .........+.++ +...|.+++|+|++++|++++.||.|+|||+.+
T Consensus 314 wd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 314 WDLEVE--DPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECCSS--SGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EECCCC--CCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999988 4333221122222 268999999999999999999999999999853
No 75
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=323.41 Aligned_cols=330 Identities=14% Similarity=0.145 Sum_probs=255.2
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCceEEEEe-------------ccCCc
Q psy6522 225 DLLIKLWRARDGKLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLV-------------GHQGI 290 (1407)
Q Consensus 225 DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~-------------~H~~~ 290 (1407)
++.++||++.+++....+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.++.....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45678899888888999999999999999999 99999999999999999999876554443 59999
Q ss_pred eEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC---CceEEEeeCC
Q psy6522 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGD 367 (1407)
Q Consensus 291 VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd---g~~Lasgs~D 367 (1407)
|.+++|+|+ +..+|++++.||.|++||+.++....... +...+.+++|++. +.+|++++.+
T Consensus 102 v~~~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 102 VETVQWYPH---DTGMFTSSSFDKTLKVWDTNTLQTADVFN-------------FEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp EEEEEECTT---CTTCEEEEETTSEEEEEETTTTEEEEEEE-------------CSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred EEEEEEccC---CCcEEEEEeCCCeEEEeeCCCCccceecc-------------CCCceeeeEeecCCCCCcEEEEEcCC
Confidence 999999993 23799999999999999998764332221 2367889999884 4599999999
Q ss_pred ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccc
Q psy6522 368 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446 (1407)
Q Consensus 368 G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~ 446 (1407)
+.|++||+.. ...+..+..|...|.+++|+|++. +|++|+.||.|++||++++......+................
T Consensus 166 ~~v~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 166 PKVQLCDLKS---GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp SSEEEEESSS---SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred CeEEEEeCCC---cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 9999999943 344566788999999999999998 589999999999999987653222222111111222223335
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCC----CeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 447 ~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~----~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
.+...|.+++|+|++.+|++++. ||.|++||+.+++....+.++.. ....+.+.......+++++.|+.|++||+
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred cccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 68889999999999999999998 99999999999887655443321 11122222224567788888999999999
Q ss_pred CCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 523 LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 523 ~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
.++ ..+..+. .|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus 322 ~~~--~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 322 YSG--EQITMLK-----GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp TTC--CEEEEEC-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--------
T ss_pred cCC--cceeeec-----cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC
Confidence 998 6666654 467899999999999999999999999999999998765443
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-32 Score=332.53 Aligned_cols=302 Identities=18% Similarity=0.200 Sum_probs=234.7
Q ss_pred cEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCceEE--EEeccCCceEEEEeccCCCCCceEEEEEecC
Q psy6522 237 KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313 (1407)
Q Consensus 237 ~~l~tl~gH~~~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~tg~~v~--~l~~H~~~VtsLafspd~~~~~~~LaSgs~D 313 (1407)
.......+|...|+||+|+| ++.+||+|+.||+|+|||+.++.... .+.+|.+.|++|+|+|. ++.+|++++.|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~---~~~~l~s~s~D 186 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL---NTNQFYASSME 186 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS---CTTEEEEECSS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC---CCCEEEEEeCC
Confidence 34445667899999999999 56799999999999999998776544 45689999999999984 34899999999
Q ss_pred CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCC
Q psy6522 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK 393 (1407)
Q Consensus 314 GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~ 393 (1407)
|+|++||+.+..... .. ....+...+.+++|+|++.+|++|+.||.|++||+.+ ..+..+.+|...
T Consensus 187 ~~v~iwd~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~ 252 (435)
T 4e54_B 187 GTTRLQDFKGNILRV-FA---------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKK 252 (435)
T ss_dssp SCEEEEETTSCEEEE-EE---------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSC
T ss_pred CEEEEeeccCCceeE-Ee---------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccce
Confidence 999999987652111 11 1122345678899999999999999999999999843 234567889999
Q ss_pred cceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 394 VDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 394 V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
|.+|+|+|++. +|++|+.|++|+|||+++..... .......|...|++++|+|+|.+|++++. ||
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~ 318 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------SFLYSLPHRHPVNAACFSPDGARLLTTDQ-KS 318 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS-------------CCSBCCBCSSCEEECCBCTTSSEEEEEES-SS
T ss_pred EEeeeecCCCceEEEEecCcceeeEEecccccccc-------------eEEEeeeccccccceeECCCCCeeEEEcC-CC
Confidence 99999999986 78899999999999998765211 11223457889999999999999999998 99
Q ss_pred eEEEEECCCCceEEEEecCCC------CeEEEEEecCCCCEEEEEe------------CCCcEEEEECCCCCccceeeee
Q psy6522 473 QIKIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSRVLLSAG------------HDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 473 ~I~IWDl~tg~~l~~l~gH~~------~V~sLafsP~dg~~LaSgs------------~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
.|+|||+.++.+...+..|.. .+..+.|+| ++.++++++ .++.|+|||+.++ ..+..+.
T Consensus 319 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g--~~~~~l~ 395 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG--KMMCQLY 395 (435)
T ss_dssp CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC--CEEEEEC
T ss_pred EEEEEECCCCccceEEecccccccccceeEEEEEcC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC--cEEEEEe
Confidence 999999999999888877653 234556777 666666654 2357999999988 5554432
Q ss_pred eeecCCCCCceeEE-EECCCCCEEEEEeCCCeEEEEEcCCCccc
Q psy6522 535 NIVEGQGEGALFDG-KWSPDGTTCALTDSYGHLLVYGLGGFKRP 577 (1407)
Q Consensus 535 ~~~~g~~~~~I~sl-afSpDG~~LAsgs~DG~I~Iwdl~sg~~~ 577 (1407)
..+...|.++ +|+|||.+||+|+ |+.|+||++.+++..
T Consensus 396 ----~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 396 ----DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ----CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred ----CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3456678776 6999999999876 789999999988753
No 77
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-31 Score=344.97 Aligned_cols=298 Identities=21% Similarity=0.276 Sum_probs=241.4
Q ss_pred EEEEEeCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCC-----ceEEEEeccCCceEEEEeccCCCCCceEEEEEe
Q psy6522 238 LLATLRGCSGEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTL-----APISVLVGHQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 238 ~l~tl~gH~~~ItsLafSpDg-~lLaSgs~DGtIrVWDl~tg-----~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
+...+.+|.+.|++|+|++++ .+|+||+.|++|+||++.+. .....+.+|...|.+++|+|++ .+|++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g----~~l~sgs 449 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG----QFALSGS 449 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS----SEEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC----CEEEEEe
Confidence 445789999999999999875 79999999999999999753 3456788999999999999976 8999999
Q ss_pred cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC
Q psy6522 312 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 391 (1407)
Q Consensus 312 ~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~ 391 (1407)
.||+|++||+.++.... .+..|...|.+++|+|++.+|++|+.|+.|+|||+.............+|.
T Consensus 450 ~Dg~v~vwd~~~~~~~~------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTR------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp TTSEEEEEETTTTEEEE------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred CCCcEEEEECCCCccee------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 99999999998763322 234677899999999999999999999999999984221111111124688
Q ss_pred CCcceEEEcCCC--CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy6522 392 DKVDSIQWSHSH--LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 469 (1407)
Q Consensus 392 ~~V~sIafSpdg--~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~ 469 (1407)
..|.+++|+|++ ..|++|+.||+|++||+.++++... ...|...|++++|+|++++|++++.
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST----------------LAGHTGYVSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE----------------EcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 899999999987 5899999999999999988765432 2357788999999999999999998
Q ss_pred cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecC----------
Q psy6522 470 FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEG---------- 539 (1407)
Q Consensus 470 ~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g---------- 539 (1407)
||.|+|||+.+++++..+..+ ..|.+++|+| ++.+|++++ |+.|+|||+.++ ..+..+......
T Consensus 582 -Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp-~~~~l~~~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~ 655 (694)
T 3dm0_A 582 -DGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAAT-EHGIKIWDLESK--SIVEDLKVDLKAEAEKADNSGP 655 (694)
T ss_dssp -TSBCEEEETTTTEEEECCBCS-SCEEEEEECS-SSSEEEEEE-TTEEEEEETTTT--EEEEEECCCCC-----------
T ss_pred -CCeEEEEECCCCceEEEecCC-CcEEEEEEcC-CCcEEEEEc-CCCEEEEECCCC--CChhhhcccccccccccccccc
Confidence 999999999999998887654 5799999999 887777665 667999999988 555544311100
Q ss_pred ----CCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 540 ----QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 540 ----~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
.+...+++++|+|||++|++|+.||.|+||++..
T Consensus 656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 656 AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp -----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112478899999999999999999999999863
No 78
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.3e-31 Score=306.97 Aligned_cols=304 Identities=13% Similarity=0.076 Sum_probs=243.0
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---EEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEE
Q psy6522 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIR 271 (1407)
Q Consensus 196 ~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~---~l~tl~gH~~~ItsLafSpDg~-lLaSgs~DGtIr 271 (1407)
......+|.+.|++++|+|++++|++|+.||.|+||++.++. .+..+.+|...|++++|+|+++ +|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344456899999999999999999999999999999999887 3455668999999999999999 999999999999
Q ss_pred EEeC-CCCceEEEEec--cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcc
Q psy6522 272 IWNL-QTLAPISVLVG--HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 348 (1407)
Q Consensus 272 VWDl-~tg~~v~~l~~--H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~ 348 (1407)
+||+ .++.. ..+.+ |...|.+++|+| + .+|++++.|+.|++||+.............+ ...+ .+...
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~-~~~~~ 152 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-D----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---SNNT-KVKNK 152 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-T----TEEEEEETTSEEEEECHHHHTTBCEEEEESC---SSSS-SSCCC
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-C----CEEEEEcCCCeEEEEcccccccccccccCCe---eeEE-eeCCc
Confidence 9999 77654 77788 999999999999 6 8999999999999999886110000000000 0111 25588
Q ss_pred eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC-CCCEEEEEeCCCeEEEEEccCC----
Q psy6522 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKCS---- 423 (1407)
Q Consensus 349 I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp-dg~~LaSgs~DGtI~IWDl~t~---- 423 (1407)
|.+++|++++ |++++.++.|++||+..............|...|.+++|+| ++.+|++++.||.|++|++...
T Consensus 153 v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~ 230 (342)
T 1yfq_A 153 IFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred eEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence 9999999887 99999999999999964122223334556888999999999 9999999999999999999865
Q ss_pred --ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecC-CCCeEEEEE
Q psy6522 424 --QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-TNEVFVLES 500 (1407)
Q Consensus 424 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH-~~~V~sLaf 500 (1407)
......... ........+...|.+++|+|++++|++++. ||.|++||+.+++++..+.+| ...|++++
T Consensus 231 ~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~- 301 (342)
T 1yfq_A 231 NSSKRFAFRCH-------RLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DGIISCWNLQTRKKIKNFAKFNEDSVVKIA- 301 (342)
T ss_dssp TCTTCEEEECC-------CCCTTCCSSCCCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSSEEEEEE-
T ss_pred ccccceeeecc-------cccccccccceeEEEEEEcCCCCEEEEecC-CceEEEEcCccHhHhhhhhcccCCCceEec-
Confidence 222211100 000011234568999999999999999998 999999999999999999998 99999999
Q ss_pred ecCCCCEEEEEeCCCc-EEEEEC
Q psy6522 501 HPFDSRVLLSAGHDGL-IIIWDI 522 (1407)
Q Consensus 501 sP~dg~~LaSgs~DG~-V~IWDi 522 (1407)
| ++.+|++|+.||. .+.|..
T Consensus 302 -~-~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 -C-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp -E-CSSEEEEEEECTHHHHCSSS
T ss_pred -C-CCCeEEEEecCCcccccccc
Confidence 7 9999999999998 555553
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.4e-31 Score=316.80 Aligned_cols=325 Identities=13% Similarity=0.119 Sum_probs=256.0
Q ss_pred ceeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEE
Q psy6522 173 SREYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDI 252 (1407)
Q Consensus 173 ~r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsL 252 (1407)
...+++..++.+.+|... .......+.+| ..+.+.+|++++++|++|+.||.|+|||+.+++.+..+.+|...|+++
T Consensus 69 ~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 145 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTI--IRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL 145 (420)
T ss_dssp TTEEEEEETTEEEEEECC--SEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE
T ss_pred CeEEEEEcCCcEEEEEec--ccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE
Confidence 345566777778887653 23333344555 455566789999999999999999999999999999889999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeee
Q psy6522 253 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 332 (1407)
Q Consensus 253 afSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~ 332 (1407)
+|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.||+|++||+.++........
T Consensus 146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG----RNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC----CEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 999999999999999999999999999999999999999999999976 8999999999999999988754443322
Q ss_pred ccccc----cc--------cccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEE-eecCCCcceEEE
Q psy6522 333 HEPVM----FN--------ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQW 399 (1407)
Q Consensus 333 ~~~~~----~~--------~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-~~h~~~V~sIaf 399 (1407)
..... .. .....+...+.+++|+|++.+|++|+.||.|++||+... ..+..+ ..|...|.+++|
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSCEEEEEE
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCCceeEEE
Confidence 11000 00 001113356677778999999999999999999999432 233333 458889999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy6522 400 SHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 478 (1407)
Q Consensus 400 Spdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWD 478 (1407)
+|++. +|++|+.||.|++||+.++...... ....+...|.++.+ +++.+|++++. |+.|++|+
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--------------~~~~~~~~v~~~~~-~~~~~l~s~~~-d~~v~iw~ 362 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPECPVGE--------------FLINEGTPINNVYF-AAGALFVSSGF-DTSIKLDI 362 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEE--------------EEESTTSCEEEEEE-ETTEEEEEETT-TEEEEEEE
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--------------hhccCCCCceEEEe-CCCCEEEEecC-CccEEEEe
Confidence 99999 9999999999999999876521110 11225567888865 57888888887 99999999
Q ss_pred CCCC---------ceEEEEecCCCCeEEEEEecCCCC---EEEEEeCCCcEEEEECCC
Q psy6522 479 AFNG---------DLVQVLKGHTNEVFVLESHPFDSR---VLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 479 l~tg---------~~l~~l~gH~~~V~sLafsP~dg~---~LaSgs~DG~V~IWDi~s 524 (1407)
+... .....+.+|.+.|.+++|+| ++. .|+++|.+|.+.+|++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEeccC
Confidence 8763 22345678899999999999 888 788888999999999864
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-31 Score=304.86 Aligned_cols=258 Identities=22% Similarity=0.323 Sum_probs=214.3
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC--CcEEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q psy6522 197 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARD--GKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 272 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~t--g~~l~tl~gH~~~ItsLafSpD--g~lLaSgs~DGtIrV 272 (1407)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ ++++.++.+|.+.|++++|+++ +++|++|+.|++|+|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 356789999999999999999999999999999999974 4678999999999999999864 899999999999999
Q ss_pred EeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 273 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 273 WDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
||+.++. .+..+.+|...|.+++|+|+. .+.+|++++.|++|++||+........ ..+..|...|.
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~--~g~~l~s~s~d~~v~~wd~~~~~~~~~----------~~~~~h~~~v~ 149 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPMLLVASSDGKVSVVEFKENGTTSP----------IIIDAHAIGVN 149 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEEBCSSSCBCC----------EEEECCSSCEE
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCC--CCcEEEEEECCCcEEEEEecCCCceee----------eeeecccCccc
Confidence 9998874 667788999999999999962 237999999999999999976521111 12345678899
Q ss_pred EEEECCC-------------CceEEEeeCCceEEEEeccCCCCC-ceeEEEeecCCCcceEEEcCCC---CEEEEEeCCC
Q psy6522 351 CSSFSPG-------------GLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDG 413 (1407)
Q Consensus 351 ~vafSpd-------------g~~Lasgs~DG~I~IwDl~~~~~~-~~i~~l~~h~~~V~sIafSpdg---~~LaSgs~DG 413 (1407)
+++|+|+ +.+|++|+.|+.|+|||+...... .....+.+|...|.+++|+|++ .+|++++.|+
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 9999997 579999999999999999543322 2455688999999999999985 7999999999
Q ss_pred eEEEEEccCCc--eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 414 TALIWYYKCSQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 414 tI~IWDl~t~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
+|+|||+.... +.... .....+...|.+++|+|++++|++++. |+.|+||+..
T Consensus 230 ~v~iWd~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~s~~g~~las~~~-D~~v~lw~~~ 284 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWKKTL-------------LKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 284 (297)
T ss_dssp CEEEEEESSTTSCCEEEE-------------SSSSCCSSCEEEEEECSSSCCEEEEET-TSCEEEEEEC
T ss_pred cEEEEEeCCCCCccceee-------------eecccCCCcEEEEEECCCCCEEEEEcC-CCcEEEEEEC
Confidence 99999987643 11110 011235678999999999999999998 9999999976
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.3e-30 Score=314.88 Aligned_cols=292 Identities=23% Similarity=0.296 Sum_probs=246.9
Q ss_pred EEEEEeCCCCCe-EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 238 LLATLRGCSGEI-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 238 ~l~tl~gH~~~I-tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
....+.+|...| .++.+ ++.+|++|+.||+|+|||+.+++.+..+.+|.+.|++++|+++ .+|++|+.||+|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-----~~l~s~s~dg~i 185 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-----GILVSGSTDRTV 185 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST-----TEEEEEETTSCE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-----CEEEEEeCCCCE
Confidence 455788998885 66666 5679999999999999999999999999999999999999885 399999999999
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEEC--CCCceEEEeeCCceEEEEeccCCCCCc------------
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS--PGGLFLATGSGDHHVRVYKMDGVDSPL------------ 382 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS--pdg~~Lasgs~DG~I~IwDl~~~~~~~------------ 382 (1407)
++||+.++.... .+..|...|.+++|+ +++.+|++|+.||.|++||+.......
T Consensus 186 ~vwd~~~~~~~~------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 186 RVWDIKKGCCTH------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp EEEETTTTEEEE------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred EEEECCCCcEEE------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 999998763322 234577899999998 578999999999999999996433211
Q ss_pred --------eeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEE
Q psy6522 383 --------GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 454 (1407)
Q Consensus 383 --------~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vts 454 (1407)
.+..+.+|...|.++ ++++.+|++|+.||.|++||+.+++..... ..|...|.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~----------------~~~~~~v~~ 315 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL----------------SGHTDRIYS 315 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE----------------CCCSSCEEE
T ss_pred eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe----------------cCCCCCEEE
Confidence 245667788888776 567889999999999999999987754422 346788999
Q ss_pred EEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeee
Q psy6522 455 VAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 455 lafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
++|+|++.+|++++. ||.|++||+.+++++..+.+|...|.+++|++ .+|++++.||.|++||+.++ .....+.
T Consensus 316 ~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~--~~~~~~~ 389 (464)
T 3v7d_B 316 TIYDHERKRCISASM-DTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY--SRKFSYH 389 (464)
T ss_dssp EEEETTTTEEEEEET-TSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC--CEEEEEE
T ss_pred EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCC--ceeeeec
Confidence 999999999999998 99999999999999999999999999999964 89999999999999999887 4333332
Q ss_pred eeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccc
Q psy6522 535 NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN 579 (1407)
Q Consensus 535 ~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~ 579 (1407)
+...+..++|++++++|++++ +|.|++||+.+++.+..
T Consensus 390 ------~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 390 ------HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp ------CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred ------CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 456788899999999999998 89999999999998765
No 82
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-32 Score=322.20 Aligned_cols=314 Identities=13% Similarity=0.086 Sum_probs=234.3
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC--ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeE
Q psy6522 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL--APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg--~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~v 318 (1407)
.+..|.+.|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|++++|+|++ .+|++++.|++|++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS----NRIVTCSQDRNAYV 81 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT----CCEEEEETTSSEEE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC----CEEEEEeCCCeEEE
Confidence 34457789999999999999999999999999999988 7788889999999999999976 89999999999999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee-cCCCcceE
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSI 397 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~-h~~~V~sI 397 (1407)
||+.++... .....+..|...|.+++|+|++.+|++|+.|+.|++||+...........+.. |...|.++
T Consensus 82 wd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 82 YEKRPDGTW---------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp C------CC---------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EEcCCCCce---------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 999876411 11123345778999999999999999999999999999965443334556666 99999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCceEEeeecc--CcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEE
Q psy6522 398 QWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM--NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIK 475 (1407)
Q Consensus 398 afSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~ 475 (1407)
+|+|++.+|++++.||.|++||+............ ............. .|...|.+++|+|++++|++++. ||.|+
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-d~~i~ 230 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-DSSVT 230 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-TTEEC
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-CCcEE
Confidence 99999999999999999999999754321110000 0000001111122 67888999999999999999998 99999
Q ss_pred EEECCCCce----EEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCcccee--------------------
Q psy6522 476 IWDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYK-------------------- 531 (1407)
Q Consensus 476 IWDl~tg~~----l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~-------------------- 531 (1407)
+||+.+++. +..+.+|...|.+++|+| ++.+|++|+.|+.+ +|+..........
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEG 308 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCC
T ss_pred EEECCCCCCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccc
Confidence 999999987 888999999999999999 89999888766655 6766522100000
Q ss_pred --------------eeee-----------eecCCCCCceeEEEECCCC-C---EEEEEeCCCeEEEEEc
Q psy6522 532 --------------WFHN-----------IVEGQGEGALFDGKWSPDG-T---TCALTDSYGHLLVYGL 571 (1407)
Q Consensus 532 --------------~~~~-----------~~~g~~~~~I~slafSpDG-~---~LAsgs~DG~I~Iwdl 571 (1407)
.+.. .+...|.+.|+++++.++. . .|++++.||.|+||++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0100 0112267889999976543 3 6999999999999986
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.2e-31 Score=319.28 Aligned_cols=279 Identities=22% Similarity=0.432 Sum_probs=241.5
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q psy6522 199 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg 278 (1407)
...+|...|+|++| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|++++| ++.+|++|+.||+|+|||+.++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~ 203 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence 34578889999988 7899999999999999999999999999999999999999 7889999999999999999999
Q ss_pred ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 279 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 279 ~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
+.+..+.+|...|.+++|++ .+|++|+.||.|++||+.+...... ......|...|.+++| ++
T Consensus 204 ~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 204 EMLNTLIHHCEAVLHLRFNN------GMMVTCSKDRSIAVWDMASPTDITL---------RRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp CEEEEECCCCSCEEEEECCT------TEEEEEETTSCEEEEECSSSSCCEE---------EEEECCCSSCEEEEEE--ET
T ss_pred cEEEEEcCCCCcEEEEEEcC------CEEEEeeCCCcEEEEeCCCCCCcee---------eeEecCCCCcEEEEEe--CC
Confidence 99999999999999999975 6999999999999999987643211 1233467788999999 78
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 438 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~ 438 (1407)
.+|++|+.||.|++||+. ....+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++......
T Consensus 267 ~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~--------- 332 (435)
T 1p22_A 267 KYIVSASGDRTIKVWNTS---TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL--------- 332 (435)
T ss_dssp TEEEEEETTSEEEEEETT---TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred CEEEEEeCCCeEEEEECC---cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE---------
Confidence 899999999999999994 345677788999999999994 679999999999999999988754422
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc---------eEEEEecCCCCeEEEEEecCCCCEEE
Q psy6522 439 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD---------LVQVLKGHTNEVFVLESHPFDSRVLL 509 (1407)
Q Consensus 439 ~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~---------~l~~l~gH~~~V~sLafsP~dg~~La 509 (1407)
..|...|.+++| ++.+|++++. ||.|++||+.++. ++..+.+|.+.|++++| ++.+|+
T Consensus 333 -------~~h~~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~ 399 (435)
T 1p22_A 333 -------EGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIV 399 (435)
T ss_dssp -------CCCSSCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEE
T ss_pred -------eCCcCcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEE
Confidence 346778999998 7889999998 9999999987766 89999999999999999 568899
Q ss_pred EEeCCCcEEEEECCCC
Q psy6522 510 SAGHDGLIIIWDILSS 525 (1407)
Q Consensus 510 Sgs~DG~V~IWDi~sg 525 (1407)
+|+.||.|+|||+.+.
T Consensus 400 s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 400 SSSHDDTILIWDFLND 415 (435)
T ss_dssp ECCSSSEEEEEC----
T ss_pred EEeCCCEEEEEECCCC
Confidence 9999999999999876
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-31 Score=307.58 Aligned_cols=265 Identities=22% Similarity=0.295 Sum_probs=222.1
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEE
Q psy6522 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIR 271 (1407)
Q Consensus 196 ~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~--tg~~l~tl~gH~~~ItsLafSpD--g~lLaSgs~DGtIr 271 (1407)
+...+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456788999999999999999999999999999999998 66788899999999999999987 99999999999999
Q ss_pred EEeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcce
Q psy6522 272 IWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 272 VWDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I 349 (1407)
|||+.+++ .+..+..|...|.+++|+|+. .+.+|++++.|+.|++||+......... .+..|...|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~v 150 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPI----------IIDAHAIGV 150 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCTTSCCCEE----------EEECCTTCE
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCC--CCCEEEEecCCCcEEEEecCCCCceeeE----------EecCCCCce
Confidence 99999887 777888999999999999971 1389999999999999999876332221 223566889
Q ss_pred EEEEECC-------------CCceEEEeeCCceEEEEeccCCCCC-ceeEEEeecCCCcceEEEcCC---CCEEEEEeCC
Q psy6522 350 LCSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHS---HLRFVSGSRD 412 (1407)
Q Consensus 350 ~~vafSp-------------dg~~Lasgs~DG~I~IwDl~~~~~~-~~i~~l~~h~~~V~sIafSpd---g~~LaSgs~D 412 (1407)
.+++|+| ++.+|++|+.||.|++||+...... ..+..+.+|...|.+++|+|+ +.+|++++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 9999999 6999999999999999999644332 344567889999999999999 8999999999
Q ss_pred CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce
Q psy6522 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL 484 (1407)
Q Consensus 413 GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~ 484 (1407)
|.|++||+.++..... ........+...|.+++|+|++.+|++++. ||.|++|++..+..
T Consensus 231 g~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWK-----------KTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGK 290 (379)
T ss_dssp SCEEEEEESSTTSCCE-----------EEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTE
T ss_pred CEEEEEeCCCCCccce-----------eeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCc
Confidence 9999999987641110 011122346778999999999999999998 99999999886543
No 85
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-31 Score=310.96 Aligned_cols=259 Identities=21% Similarity=0.299 Sum_probs=208.0
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--EEEEEeCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q psy6522 198 YVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK--LLATLRGCSGEISDIAIDN--RNILLAAGTVDKTIRIW 273 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~--~l~tl~gH~~~ItsLafSp--Dg~lLaSgs~DGtIrVW 273 (1407)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ++.++.+|.+.|++++|++ ++++|++|+.|++|+||
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998875 5678999999999999986 48999999999999999
Q ss_pred eCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 274 NLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 274 Dl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
|+.++. .+..+.+|...|.+++|+|+. .+.+|++++.|++|++||+....... ....+..|...+.+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~---------~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWE---------VKKINNAHTIGCNA 155 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEE---------ECCBTTSSSSCBCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcc---------eeeeeccccCCcce
Confidence 998874 567788999999999999962 24799999999999999987652110 11223456678899
Q ss_pred EEECCC-----------------CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCC----CEEEEEe
Q psy6522 352 SSFSPG-----------------GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH----LRFVSGS 410 (1407)
Q Consensus 352 vafSpd-----------------g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg----~~LaSgs 410 (1407)
++|+|+ +.+|++|+.|+.|++||+........+..+.+|...|.+++|+|++ .+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 999987 4689999999999999995333334566788999999999999986 7899999
Q ss_pred CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 411 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 411 ~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
.||+|+||++.+..... ........+...|.+++|+|++.+|++++. |+.|+||+..
T Consensus 236 ~D~~v~iw~~~~~~~~~------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~-D~~v~lw~~~ 292 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNT------------WSPKLLHKFNDVVWHVSWSITANILAVSGG-DNKVTLWKES 292 (316)
T ss_dssp TTCEEEEEECSSTTCCC------------CBCCEEEECSSCEEEEEECTTTCCEEEEES-SSCEEEEEEC
T ss_pred CCCeEEEEEccCccccc------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-CCeEEEEEEC
Confidence 99999999987631000 000011235678999999999999999998 9999999975
No 86
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-31 Score=318.48 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=239.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------EEEEEeCCC------------CCeEEEEEcCCC
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCS------------GEISDIAIDNRN 258 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~-----------~l~tl~gH~------------~~ItsLafSpDg 258 (1407)
.|.+.|+||+|+|+|++||+|+.||.|+|||+.++. ++..+.+|. ..|++|+|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999887 588899998 889999999998
Q ss_pred --CEEEEEECCCeEEEEeCCCCceE---------------------------------------EE-EeccCCceEEEEe
Q psy6522 259 --ILLAAGTVDKTIRIWNLQTLAPI---------------------------------------SV-LVGHQGIITGVNF 296 (1407)
Q Consensus 259 --~lLaSgs~DGtIrVWDl~tg~~v---------------------------------------~~-l~~H~~~VtsLaf 296 (1407)
.+|++++.|++|+||++.++... .. +.+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999764432 12 3579999999999
Q ss_pred ccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC-ceEEEeeCCceEEEEec
Q psy6522 297 CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKM 375 (1407)
Q Consensus 297 spd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg-~~Lasgs~DG~I~IwDl 375 (1407)
+|++ .+|++| .|+.|++||+............. ...+..|...|.+++|+|++ .+|++|+.||.|++||+
T Consensus 186 ~~~~----~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 186 NSDY----ETYLSA-DDLRINLWHLEITDRSFNIVDIK----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CTTS----SEEEEE-CSSEEEEEETTEEEEEEEEEECC----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCC----CEEEEe-CCCeEEEEECCCCCceeeeeecc----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 9976 899998 79999999998432211111111 11244677899999999998 99999999999999999
Q ss_pred cCCCC-CceeEEEeecCC------------CcceEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEeeeccCcCCCCCcc
Q psy6522 376 DGVDS-PLGILEVEEHSD------------KVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKE 441 (1407)
Q Consensus 376 ~~~~~-~~~i~~l~~h~~------------~V~sIafSpdg~~LaSgs~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~ 441 (1407)
..... ...+..+..|.. .|.+++|+|++.+|++++. |.|+|||+.+ ++........ ........
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~ 334 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYLRSKLC 334 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGGTTTHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-cccccccc
Confidence 54332 112455666765 8999999999999999999 9999999986 4422211100 00000000
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q psy6522 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521 (1407)
Q Consensus 442 ~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWD 521 (1407)
..........+..++|+|++.+|++++. ||.|+|||+.+++.+ .+.+|..........+ ...+..++..
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~-dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~------- 403 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSY-NNFFRMFDRNTKRDI-TLEASRENNKPRTVLK--PRKVCASGKR------- 403 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECS-TTEEEEEETTTCCEE-EEECCSTTCCTTCBCC--CCCEECSSCC-------
T ss_pred ccccccccccceEEEECCCCCEEEEecc-CCEEEEEEcCCCcce-eeeecccccccccccC--CccccccCCc-------
Confidence 0000001112345999999999999988 999999999998876 5666655443222222 2223332211
Q ss_pred CCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEc
Q psy6522 522 ILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGL 571 (1407)
Q Consensus 522 i~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl 571 (1407)
.. ..+.. ........|.+++|+|++++||+++.++ +++|.-
T Consensus 404 --~~--~~~~~----~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 404 --KK--DEISV----DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp --CT--TCEEG----GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred --cc--ccccc----cccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 00 00000 0112346799999999999999998865 777753
No 87
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.98 E-value=1.5e-29 Score=306.82 Aligned_cols=306 Identities=21% Similarity=0.380 Sum_probs=264.1
Q ss_pred cceeeeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEE
Q psy6522 172 RSREYSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD 251 (1407)
Q Consensus 172 ~~r~~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~Its 251 (1407)
....++|+.++.+.+|... ..+....+.+|...|++++|+ +++|++|+.||+|+|||+.+++.+.++.+|...|.+
T Consensus 129 g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 204 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204 (445)
T ss_dssp TTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEE
Confidence 4567788899999998753 456778899999999999998 679999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceee
Q psy6522 252 IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331 (1407)
Q Consensus 252 LafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~ 331 (1407)
++|+ +.+|++|+.||+|++||+.+++.+..+.+|...|.++.|. + .+|++++.||.|++||+.++....
T Consensus 205 ~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~----~~l~~~~~dg~i~iwd~~~~~~~~--- 273 (445)
T 2ovr_B 205 MHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G----RRVVSGAYDFMVKVWDPETETCLH--- 273 (445)
T ss_dssp EEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--S----SCEEEEETTSCEEEEEGGGTEEEE---
T ss_pred EEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--C----CEEEEEcCCCEEEEEECCCCcEeE---
Confidence 9996 5689999999999999999999999999999999999993 3 789999999999999998763322
Q ss_pred eccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeC
Q psy6522 332 FHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR 411 (1407)
Q Consensus 332 ~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~ 411 (1407)
.+..|...|.+++| ++.+|++|+.||.|++||+. ....+..+.+|...+.++.++ +.+|++|+.
T Consensus 274 ---------~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 274 ---------TLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE---TGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp ---------EECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT---TCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred ---------EecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC---CCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 22356688999999 78899999999999999994 345667788899999888875 569999999
Q ss_pred CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE---
Q psy6522 412 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL--- 488 (1407)
Q Consensus 412 DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l--- 488 (1407)
||.|++||+.+++...... ....+...|.+++|+ +.+|++++. ||.|++||+.+++.+..+
T Consensus 338 dg~i~vwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~ 401 (445)
T 2ovr_B 338 DSTVKIWDIKTGQCLQTLQ-------------GPNKHQSAVTCLQFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVTL 401 (445)
T ss_dssp TSCEEEEETTTCCEEEEEC-------------STTSCSSCEEEEEEC--SSEEEEEET-TSEEEEEETTTCCEEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEc-------------cCCCCCCCEEEEEEC--CCEEEEEeC-CCeEEEEECCCCceeeeeecc
Confidence 9999999998877544321 112367789999996 678999988 999999999999999988
Q ss_pred --ecCCCCeEEEEEecCCCCEEEEEeCCCc----EEEEECCCC
Q psy6522 489 --KGHTNEVFVLESHPFDSRVLLSAGHDGL----IIIWDILSS 525 (1407)
Q Consensus 489 --~gH~~~V~sLafsP~dg~~LaSgs~DG~----V~IWDi~sg 525 (1407)
.+|.+.|++++|+| ++.+|++|+.||+ |.|||+...
T Consensus 402 ~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 402 ESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCCC
Confidence 47889999999999 9999999999998 999998753
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.1e-30 Score=304.02 Aligned_cols=309 Identities=13% Similarity=0.201 Sum_probs=241.2
Q ss_pred CCCceeEEEEEcCCCCCEEEEEEcCC---CCEEEEEECCCeEEEEEcCC-CcEE-EEEeCCCCCeEEEEEcCCCCEEEEE
Q psy6522 190 KYSNLRQHYVNLGHLSAVFCVLFDKL---GEVIVTGADDLLIKLWRARD-GKLL-ATLRGCSGEISDIAIDNRNILLAAG 264 (1407)
Q Consensus 190 ~~~~~~~~~~L~GH~~~V~~vafSpd---G~~LaTGS~DG~V~IWDl~t-g~~l-~tl~gH~~~ItsLafSpDg~lLaSg 264 (1407)
...+++.+..+.+|.+.|+||+|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 34566777888999999999999999 69999999999999999997 5555 7888999999999999999999999
Q ss_pred ECCCeEEEEeCCCCceEEEEeccCCceEEEEe--ccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccccc
Q psy6522 265 TVDKTIRIWNLQTLAPISVLVGHQGIITGVNF--CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 265 s~DGtIrVWDl~tg~~v~~l~~H~~~VtsLaf--spd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
+.||.|+|||+.+++.+. +..|...|++++| ++++ .+|++++.||.|++||+.++........
T Consensus 105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------- 169 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY----SCVMTGSWDKTLKFWDTRSSNPMMVLQL---------- 169 (368)
T ss_dssp ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC----EEEEEEETTSEEEEECSSCSSCSEEEEC----------
T ss_pred cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC----CEEEEccCCCcEEEEECCCCcEEEEEec----------
Confidence 999999999999988766 5679999999999 6654 8999999999999999988754433221
Q ss_pred CCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCE----EEEEeCCCeEEEE
Q psy6522 343 RPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR----FVSGSRDGTALIW 418 (1407)
Q Consensus 343 ~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~----LaSgs~DGtI~IW 418 (1407)
...+.++.+.+ ..+++++.++.+.+|++...... .......+...+.++++.++... |++++.||.|++|
T Consensus 170 ---~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 170 ---PERCYCADVIY--PMAVVATAERGLIVYQLENQPSE-FRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp ---SSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEE-EEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred ---CCCceEEEecC--CeeEEEeCCCcEEEEEeccccch-hhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 13566666664 47888999999999999533211 11112223445666666655543 9999999999999
Q ss_pred EccCCce---EEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCe
Q psy6522 419 YYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEV 495 (1407)
Q Consensus 419 Dl~t~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V 495 (1407)
|+..... ....... . ..........+...|++++|+|++++|++++. ||.|++||+.+++++..+.+|...|
T Consensus 244 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCH-R---SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp ESSCSCHHHHSEEEECS-E---EC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEETTTTEEEEECCCCSSCE
T ss_pred ecCCCCccccceeeeee-e---cccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEECCCCcEEEEecCCCCCc
Confidence 9987631 1111000 0 00001111233447999999999999999998 9999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 496 FVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 496 ~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.+++|+| ++.+|++++.|+..+.|++...
T Consensus 319 ~~~~~s~-~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 319 SACCFNH-NGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEECT-TSSCEEEEECCCSTTCGGGCCT
T ss_pred eEEEECC-CCCeEEEEecccccccccccCC
Confidence 9999999 9999999999987666665443
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.6e-31 Score=328.93 Aligned_cols=317 Identities=14% Similarity=0.105 Sum_probs=231.3
Q ss_pred eeeccCCceEEEecCCCCce--eEEEEEcCCCCCEEEEEEcCC------CCEEEEEECCCeEEEEEcCCCcE--------
Q psy6522 175 EYSGPLSRFLMISSHKYSNL--RQHYVNLGHLSAVFCVLFDKL------GEVIVTGADDLLIKLWRARDGKL-------- 238 (1407)
Q Consensus 175 ~~tg~~~~~~~i~~~~~~~~--~~~~~L~GH~~~V~~vafSpd------G~~LaTGS~DG~V~IWDl~tg~~-------- 238 (1407)
..+++.++.+.+|....... ....++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 35677888888887543332 223557789999999999997 57999999999999999987642
Q ss_pred ---EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC-ceEEEEeccCCceEEE--EeccCCCCCceEEEEEec
Q psy6522 239 ---LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL-APISVLVGHQGIITGV--NFCPLEVNGFNYLASTST 312 (1407)
Q Consensus 239 ---l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg-~~v~~l~~H~~~VtsL--afspd~~~~~~~LaSgs~ 312 (1407)
..++.+|...|++++|++++ .|++|+.||+|++||+.++ .+...+.+|...|++| .|+|++ ..+|++++.
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g---~~~laS~S~ 331 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE---DTVVSTVAV 331 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS---CCEEEEEET
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC---CeEEEEecc
Confidence 34788999999999999865 8999999999999999976 4566789999999999 466632 278999999
Q ss_pred CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCC
Q psy6522 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD 392 (1407)
Q Consensus 313 DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~ 392 (1407)
|++|++||+.+........... ....|.+++|+|++..|++++.|++|++||+.. ...+..+.+|.+
T Consensus 332 D~tvklWD~~~~~~~~~~~~~~----------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~---~~~~~~l~gH~~ 398 (524)
T 2j04_B 332 DGYFYIFNPKDIATTKTTVSRF----------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA---AFAVHPLVSRET 398 (524)
T ss_dssp TSEEEEECGGGHHHHCEEEEEC----------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTC---TTCCEEEEECSS
T ss_pred CCeEEEEECCCCCccccccccc----------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcc---cccceeeecCCC
Confidence 9999999998764433222111 113478899999999999999999999999943 344556778999
Q ss_pred CcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 393 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 393 ~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
.|++|+|+|++.+|++|+.||+|+|||+....+ ..... .........+..++|+|++..+. . . +
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-----------~~~~~-~~~~~~~~~v~~v~~sp~g~~~~-~-~-~- 462 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADGSLIITNAARRLL-----------HGIKN-SSATQKSLRLWKWDYSIKDDKYR-I-D-S- 462 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-----------TCC-------CCCCEEEECBCCSSSCEEE-E-C-C-
T ss_pred ceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-----------ccccc-CccceeeeEEEEeccCCCCCeEE-c-c-C-
Confidence 999999999999999999999999999754310 00000 00011223578899999998552 2 2 2
Q ss_pred eEEEEECC-CCceEEEEecCCCCeEEEEEecCCC---CEEEEEeCCCcEEEEECCCC
Q psy6522 473 QIKIWDAF-NGDLVQVLKGHTNEVFVLESHPFDS---RVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 473 ~I~IWDl~-tg~~l~~l~gH~~~V~sLafsP~dg---~~LaSgs~DG~V~IWDi~sg 525 (1407)
.+.+|+.. ++.++..+.+|...|++|+|+| ++ .+|++|+.||.|+||++...
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSCC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCC-CCCccHHHHhhccCceEEEEEcccc
Confidence 33444433 5778889999999999999999 64 59999999999999998654
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=4.7e-31 Score=313.61 Aligned_cols=287 Identities=13% Similarity=0.081 Sum_probs=221.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCC-------eEEEEEcCCCcE----------EEEEeCCCCCeEEEEEcCCCCEEEEEE-
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDL-------LIKLWRARDGKL----------LATLRGCSGEISDIAIDNRNILLAAGT- 265 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG-------~V~IWDl~tg~~----------l~tl~gH~~~ItsLafSpDg~lLaSgs- 265 (1407)
..+|+||+|+|||++|++|+.+. .|+||++..+.. ...|.+|...|.+++++ +..+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 46899999999999999998643 599999876531 13467888899888775 44666654
Q ss_pred ----------CCCeEEEEeCCCCceEE----EEe-----ccCCceEEEEeccCCCCCceEEEE--EecCCceeEEeeccc
Q psy6522 266 ----------VDKTIRIWNLQTLAPIS----VLV-----GHQGIITGVNFCPLEVNGFNYLAS--TSTDGCIGFWKYKLD 324 (1407)
Q Consensus 266 ----------~DGtIrVWDl~tg~~v~----~l~-----~H~~~VtsLafspd~~~~~~~LaS--gs~DGtI~vWDl~t~ 324 (1407)
.|+.|++|++.+..... ... .+...+.+++|+|++ .+|++ ++.|++|++||+.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg----~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG----TVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS----SCEEEEESCSSCEEEEEETTTT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC----CEEEEEECCCCCEEEEeECCCC
Confidence 46789999986644222 111 234568899999987 66654 447899999999877
Q ss_pred cccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC
Q psy6522 325 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 404 (1407)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~ 404 (1407)
...... .|...|.+++|+|+|++|++++.++ +.+|+... ...........|...|.+++|+|++.
T Consensus 168 ~~~~~~-------------~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~-~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 168 TEKFEI-------------ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT-GSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp EEEEEE-------------ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTT-CCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred cEEEEe-------------CCCCceEEEEEccCCceEEecccee-EEEEEecc-CcceeeeecCCCCCCEEEEEEcCCCC
Confidence 433221 1346799999999999999998665 55555422 22222233456888999999999999
Q ss_pred EEEEEeCCC----eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 405 RFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 405 ~LaSgs~DG----tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
+|++++.|+ .+++|++.......... .....+...|++++|+|+|++|++++. |+.|+|||+.
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~------------~~~~~~~~~V~~~~~Spdg~~lasgs~-D~~V~iwd~~ 299 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRS------------KQVTNRFKGITSMDVDMKGELAVLASN-DNSIALVKLK 299 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEE------------EEEESSCSCEEEEEECTTSCEEEEEET-TSCEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceee------------eeecCCCCCeEeEEECCCCCceEEEcC-CCEEEEEECC
Confidence 999999887 68889887765432211 122346778999999999999999998 9999999999
Q ss_pred CCceEEEE-ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 481 NGDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 481 tg~~l~~l-~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+++++..+ .+|...|++|+|+| |+++||||+.|++|+|||+...
T Consensus 300 ~~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 300 DLSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred CCcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 99999875 79999999999999 9999999999999999999654
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.1e-29 Score=301.73 Aligned_cols=294 Identities=12% Similarity=0.057 Sum_probs=224.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC-------eEEEEeCCCCce----------EEEEeccCCceEEEEeccCCCCCceEE
Q psy6522 245 CSGEISDIAIDNRNILLAAGTVDK-------TIRIWNLQTLAP----------ISVLVGHQGIITGVNFCPLEVNGFNYL 307 (1407)
Q Consensus 245 H~~~ItsLafSpDg~lLaSgs~DG-------tIrVWDl~tg~~----------v~~l~~H~~~VtsLafspd~~~~~~~L 307 (1407)
..-+|++++|+||+++|++|+.+. .|+||++..... ...+.+|...|.++++.. ..+
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~------~~~ 86 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK------GII 86 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET------TEE
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC------CEE
Confidence 346899999999999999998643 599999865432 124567888899988865 556
Q ss_pred EEEe-----------cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe--eCCceEEEEe
Q psy6522 308 ASTS-----------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG--SGDHHVRVYK 374 (1407)
Q Consensus 308 aSgs-----------~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg--s~DG~I~IwD 374 (1407)
++|+ .|+.|++|++............. .......+...+.+++|+|||++|+++ +.|+.|+|||
T Consensus 87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSV---DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEE---CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeee---ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 6654 56778899887653322221111 011122344668999999999998755 4689999999
Q ss_pred ccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEE
Q psy6522 375 MDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM 454 (1407)
Q Consensus 375 l~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vts 454 (1407)
+. ....+..+ .|.+.|.+|+|+|+|.+|++++.+ .+.+|+..++...... ....+...|.+
T Consensus 164 ~~---~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~v~~ 224 (365)
T 4h5i_A 164 PS---DLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARK--------------TDFDKNWSLSK 224 (365)
T ss_dssp TT---TTEEEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEE--------------CCCCTTEEEEE
T ss_pred CC---CCcEEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeee--------------ecCCCCCCEEE
Confidence 94 33444444 478889999999999999999855 5666666665543221 12346778999
Q ss_pred EEECCCCCEEEEEEecCC----eEEEEECCCCce----EEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCC
Q psy6522 455 VAWDASDRWVITAINFNF----QIKIWDAFNGDL----VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSK 526 (1407)
Q Consensus 455 lafSpdg~~Lasgs~~DG----~I~IWDl~tg~~----l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk 526 (1407)
++|+|++.++++++. ++ .+++|++..+.. ...+.+|...|++++|+| ++++||+|+.||+|+|||+.++
T Consensus 225 v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~- 301 (365)
T 4h5i_A 225 INFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDL- 301 (365)
T ss_dssp EEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTT-
T ss_pred EEEcCCCCEEEEEec-CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCC-
Confidence 999999999999988 66 688999877653 456789999999999999 9999999999999999999988
Q ss_pred ccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 527 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 527 ~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
+++..+. ..|...|++++|||||++||+++.|++|+||++..+
T Consensus 302 -~~~~~~~----~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 302 -SMSKIFK----QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -EEEEEET----TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -cEEEEec----CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6665542 246789999999999999999999999999999654
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=8.2e-30 Score=305.39 Aligned_cols=294 Identities=19% Similarity=0.288 Sum_probs=236.6
Q ss_pred EeCCCCC--eEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEec-cCCceEEEEeccCCCCCceEEEEEecCCceeE
Q psy6522 242 LRGCSGE--ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 242 l~gH~~~--ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~v 318 (1407)
..+|... +.+++|++ ..+++++.|+.|+|||+.+++....+.. |...|++++|+|++ .+|++|+.||.|++
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~dg~i~i 160 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG----SFLSVGLGNGLVDI 160 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS----SEEEEEETTSCEEE
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC----CEEEEECCCCeEEE
Confidence 4456554 45566665 4577888899999999999998887775 88999999999976 89999999999999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEE
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ 398 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIa 398 (1407)
||+.++.... .+..|...|.+++| ++.+|++|+.||.|++||+... ...+..+.+|.+.|.+++
T Consensus 161 wd~~~~~~~~------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~ 224 (401)
T 4aez_A 161 YDVESQTKLR------------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLA 224 (401)
T ss_dssp EETTTCCEEE------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS--SCEEEEEECCSSCEEEEE
T ss_pred EECcCCeEEE------------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC--cceeeEEcCCCCCeeEEE
Confidence 9998763322 23356788999999 4679999999999999999532 345667788999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe--cCCeEEE
Q psy6522 399 WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--FNFQIKI 476 (1407)
Q Consensus 399 fSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~--~DG~I~I 476 (1407)
|+|++.+|++|+.||.|++||+.++...... ..+...|.+++|+|++..+++++. .|+.|++
T Consensus 225 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----------------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTK----------------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCSSEEEEE----------------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEccCCCCCccEEe----------------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 9999999999999999999999987644321 246778999999998866665543 4999999
Q ss_pred EECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEe--CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 477 WDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 477 WDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs--~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
||+.+++++..+. |...|.+++|+| ++.+|++++ .||.|+|||+.+++......+. .|...|.+++|+|+|
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AHDTRVLYSALSPDG 361 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CCSSCCCEEEECTTS
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CCCCCEEEEEECCCC
Confidence 9999999999886 567899999999 899999854 8999999999886322222222 456889999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 555 TTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 555 ~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
.+|++++.||.|++|++.+++.+...
T Consensus 362 ~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 362 RILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SEEEEECTTSEEEEEECCC-------
T ss_pred CEEEEEeCCCcEEEEECCCCcccccc
Confidence 99999999999999999998876543
No 93
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-30 Score=300.12 Aligned_cols=263 Identities=22% Similarity=0.318 Sum_probs=216.6
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--CCceEEEEeccCCceEEEEeccCCCCCceEEEEEecC
Q psy6522 236 GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD 313 (1407)
Q Consensus 236 g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~--tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D 313 (1407)
|+++..+.+|.+.|++++|+|++++||+|+.||.|+||++. ++..+..+.+|...|++++|+++. ++.+|++++.|
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~d 78 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYD 78 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETT
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccC
Confidence 45677889999999999999999999999999999999997 667788899999999999999752 23899999999
Q ss_pred CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEEEeecC
Q psy6522 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS 391 (1407)
Q Consensus 314 GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~ 391 (1407)
|.|++||+.++.... ...+..|...|.+++|+|+ +.+|++++.|+.|++||+... .......+..|.
T Consensus 79 g~v~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~ 147 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQ----------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN-GTTSPIIIDAHA 147 (379)
T ss_dssp SCEEEEEEETTEEEE----------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT-SCCCEEEEECCT
T ss_pred CEEEEEEcCCCceeE----------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC-CceeeEEecCCC
Confidence 999999998763111 1223356688999999999 999999999999999999543 234455678899
Q ss_pred CCcceEEEcC-------------CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEEC
Q psy6522 392 DKVDSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 458 (1407)
Q Consensus 392 ~~V~sIafSp-------------dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS 458 (1407)
..|.+++|+| ++.+|++++.||.|++||+.++...... ......|...|.+++|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE------------EEEECCCSSCEEEEEEC
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee------------EEEEecccCcEeEEEEC
Confidence 9999999999 6899999999999999999876532111 11223577889999999
Q ss_pred CC---CCEEEEEEecCCeEEEEECCCCc---eEEEE--ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 459 AS---DRWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 459 pd---g~~Lasgs~~DG~I~IWDl~tg~---~l~~l--~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
|+ +.+|++++. ||.|+|||+.++. ....+ ..|...|++++|+| ++.+|++++.||.|+||++...
T Consensus 216 p~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 216 PTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 99 889999888 9999999998864 22333 34888999999999 9999999999999999999865
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.1e-29 Score=289.86 Aligned_cols=259 Identities=22% Similarity=0.303 Sum_probs=211.1
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC--CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 239 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT--LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 239 l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t--g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
+..+.+|...|++++|+|+|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|++++|++.. .+.+|++++.|++|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKV 79 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEE
Confidence 346789999999999999999999999999999999974 46788999999999999998641 23899999999999
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCc
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 394 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V 394 (1407)
++||+.++.... ...+..|...|.+++|+|+ +.+|++|+.|+.|++||+..... .....+.+|...|
T Consensus 80 ~iWd~~~~~~~~----------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~h~~~v 148 (297)
T 2pm7_B 80 MIWKEENGRWSQ----------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGV 148 (297)
T ss_dssp EEEEBSSSCBCC----------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-BCCEEEECCSSCE
T ss_pred EEEEcCCCceEE----------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-eeeeeeecccCcc
Confidence 999997652111 1123356788999999997 88999999999999999954322 2235678899999
Q ss_pred ceEEEcCC-------------CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCC
Q psy6522 395 DSIQWSHS-------------HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD 461 (1407)
Q Consensus 395 ~sIafSpd-------------g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg 461 (1407)
.+++|+|+ +.+|++|+.|++|+|||+.++..... .......|...|.+++|+|++
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------~~~~l~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------LESTLEGHSDWVRDVAWSPTV 216 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE------------EEEEECCCSSCEEEEEECCCC
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE------------EEEEecCCCCceEEEEECCCC
Confidence 99999997 46999999999999999987652110 011224578899999999995
Q ss_pred ---CEEEEEEecCCeEEEEECCCCc---eEEEE--ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 462 ---RWVITAINFNFQIKIWDAFNGD---LVQVL--KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 462 ---~~Lasgs~~DG~I~IWDl~tg~---~l~~l--~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
.+|++++. |+.|+|||+.+.. ....+ ..|...|++++|+| ++++|++++.||.|+||+...
T Consensus 217 ~~~~~las~s~-D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 217 LLRSYMASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CCceEEEEEEC-CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 78888887 9999999987743 22333 46888999999999 999999999999999999763
No 95
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.6e-29 Score=298.65 Aligned_cols=289 Identities=18% Similarity=0.298 Sum_probs=236.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe--ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccc
Q psy6522 248 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDI 325 (1407)
Q Consensus 248 ~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~--~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~ 325 (1407)
.++.|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++|+|+|++ .+|++|+.||+|++||+.++.
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg----~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----SEEEEEETTSCEEEEETTTTE
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC----CEEEEEECCCeEEEEEcCCCc
Confidence 46789999864 787776 9999999999999887765 577889999999977 899999999999999998774
Q ss_pred ccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCE
Q psy6522 326 DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 405 (1407)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~ 405 (1407)
.+. .+..|...+.+++++ +.+|++|+.|+.+++||... ....+..+.+|...+..+.|++++.+
T Consensus 181 ~~~------------~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~--~~~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 181 RLR------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp EEE------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEE------------EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc--cceeeEEecccccceeeeeecCCCCe
Confidence 332 233566788888774 67999999999999999843 34456678899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEE-EEE-ecCCeEEEEECCCCc
Q psy6522 406 FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI-TAI-NFNFQIKIWDAFNGD 483 (1407)
Q Consensus 406 LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~La-sgs-~~DG~I~IWDl~tg~ 483 (1407)
|++++.||.+++|++.+++... ........+...|.+++|+|++..++ +++ ..|+.|+|||+.+++
T Consensus 245 l~s~~~D~~v~i~~~~~~~~~~------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 245 LASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEEETTSCEEEEESSCCSSCS------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeeeccccceEEeeccccccc------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 9999999999999998765211 11122345778899999999876554 332 348999999999999
Q ss_pred eEEEEecCCCCeEEEEEecCCCCEEEEEe--CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe
Q psy6522 484 LVQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 561 (1407)
Q Consensus 484 ~l~~l~gH~~~V~sLafsP~dg~~LaSgs--~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs 561 (1407)
++..+..|. .+.++.|++ ++..|++++ .||.|+|||+.++ ..+..+. .|.+.|++++|+|||++||+|+
T Consensus 313 ~~~~~~~~~-~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~-----gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 313 CLSAVDAHS-QVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM--AKVAELK-----GHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEEEECSS-CEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC--CEEEEEC-----CCSSCEEEEEECTTSSCEEEEE
T ss_pred cceeecccc-ceeeeeecC-CCCeEEEEEecCCCEEEEEECCCC--cEEEEEc-----CCCCCEEEEEEcCCCCEEEEEe
Confidence 999988664 688999999 778777765 6999999999998 7777665 4678999999999999999999
Q ss_pred CCCeEEEEEcCCCccccc
Q psy6522 562 SYGHLLVYGLGGFKRPQN 579 (1407)
Q Consensus 562 ~DG~I~Iwdl~sg~~~~~ 579 (1407)
.||+|+||++....+...
T Consensus 384 ~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 384 ADETLRLWRCFELDPARR 401 (420)
T ss_dssp TTTEEEEECCSCSSCC--
T ss_pred cCCeEEEEECCCCCccch
Confidence 999999999987655443
No 96
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.3e-29 Score=293.52 Aligned_cols=286 Identities=15% Similarity=0.082 Sum_probs=235.8
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc---eEEEEeccCCceEEEEeccCCCCCce-EEEEEecCCc
Q psy6522 240 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVGHQGIITGVNFCPLEVNGFN-YLASTSTDGC 315 (1407)
Q Consensus 240 ~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~---~v~~l~~H~~~VtsLafspd~~~~~~-~LaSgs~DGt 315 (1407)
....+|.+.|++++|+|++.+|++++.|+.|+||++.++. ....+..|...|++++|+|++ . +|++++.||.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~ 80 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT----DLQIYVGTVQGE 80 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS----SEEEEEEETTSC
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC----CcEEEEEcCCCe
Confidence 3345899999999999999999999999999999998877 355666899999999999976 8 9999999999
Q ss_pred eeEEee-ccccccceeeeccccccccccCC--CCcceEEEEECCCCceEEEeeCCceEEEEeccCCCC------CceeEE
Q psy6522 316 IGFWKY-KLDIDISKTVFHEPVMFNERIRP--GNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS------PLGILE 386 (1407)
Q Consensus 316 I~vWDl-~t~~~~~~~~~~~~~~~~~~~~~--h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~------~~~i~~ 386 (1407)
|++||+ ..+.. ..+.. |...|.+++|+| +.+|++++.|+.|++||+..... ...+..
T Consensus 81 i~~wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 81 ILKVDLIGSPSF-------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp EEEECSSSSSSE-------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred EEEEEeccCCce-------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 999998 76522 12234 678999999999 99999999999999999853100 112222
Q ss_pred EeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEEEEEECC-CCCEE
Q psy6522 387 VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWV 464 (1407)
Q Consensus 387 l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp-dg~~L 464 (1407)
+. |...|.+++|++++ |++++.||.|++||+.+ +..... .....+...+.+++|+| ++.++
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT--------------IEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE--------------EEECSCSSCEEEEEECSGGGCEE
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce--------------eeecCCCCceeEEEECCCCCCEE
Confidence 33 88899999999987 99999999999999987 442110 11124567899999999 99999
Q ss_pred EEEEecCCeEEEEECCCC------ceEEEEecCCC---------CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccc
Q psy6522 465 ITAINFNFQIKIWDAFNG------DLVQVLKGHTN---------EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG 529 (1407)
Q Consensus 465 asgs~~DG~I~IWDl~tg------~~l~~l~gH~~---------~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~ 529 (1407)
++++. ||.|++|++... +.+..+.+|.. .|.+++|+| ++.+|++++.||.|++||+.++ ..
T Consensus 210 ~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~--~~ 285 (342)
T 1yfq_A 210 ACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTR--KK 285 (342)
T ss_dssp EEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTT--EE
T ss_pred EEEec-CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccH--hH
Confidence 99998 999999999887 88888998865 999999999 9999999999999999999988 65
Q ss_pred eeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCe-EEEEE
Q psy6522 530 YKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGH-LLVYG 570 (1407)
Q Consensus 530 l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~-I~Iwd 570 (1407)
+..+. ++|...|.+++ |++++|++++.||. ...|.
T Consensus 286 ~~~~~----~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 286 IKNFA----KFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEECC----CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hhhhh----cccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 65544 33378899999 99999999999998 44443
No 97
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=281.50 Aligned_cols=284 Identities=18% Similarity=0.290 Sum_probs=229.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe--ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 249 ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~--~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
+++|+||+++ +||+|. |++|+|||+.+++++..+. +|...|++++|+|++ ++|++|+.||+|++|++.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~----~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----SEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC----CEEEEEECCCcEEEeecCCcee
Confidence 5789999986 777765 9999999999999888775 577889999999977 8999999999999999988744
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEE
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 406 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~L 406 (1407)
.... ..|...+.++.+ ++.+|++|+.++.+++|+... ....+..+.+|...+..+.+++++.+|
T Consensus 102 ~~~~------------~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (318)
T 4ggc_A 102 LRNM------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRHL 165 (318)
T ss_dssp EEEE------------ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEe------------cCccceEEEeec--CCCEEEEEecCCceEeeecCC--CceeEEEEcCccCceEEEEEcCCCCEE
Confidence 3322 244556665554 567999999999999999843 344566778999999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEE--EEecCCeEEEEECCCCce
Q psy6522 407 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVIT--AINFNFQIKIWDAFNGDL 484 (1407)
Q Consensus 407 aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Las--gs~~DG~I~IWDl~tg~~ 484 (1407)
++++.||+|++||+.+++... ........+...|.++++++++..++. ++..++.|++||......
T Consensus 166 ~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 166 ASGGNDNLVNVWPSAPGEGGW------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEEETTSCEEEEESSCBTTBS------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEecCcceeEEECCCCcccc------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 999999999999998765221 111222446678999999998765543 233478999999998887
Q ss_pred EEEEecCCCCeEEEEEecCCCCEEEEEe--CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeC
Q psy6522 485 VQVLKGHTNEVFVLESHPFDSRVLLSAG--HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 562 (1407)
Q Consensus 485 l~~l~gH~~~V~sLafsP~dg~~LaSgs--~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~ 562 (1407)
..... |...+..+.|++ ++..+++++ .||.|+|||+.++ ..+..+. .|.+.|++++|+|||++||+++.
T Consensus 234 ~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~--~~~~~l~-----gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 234 LSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTM--AKVAELK-----GHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTC--CEEEEEC-----CCSSCEEEEEECTTSSCEEEEET
T ss_pred ccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCC--cEEEEEc-----CCCCCEEEEEEcCCCCEEEEEec
Confidence 76654 667799999999 777776654 7999999999998 7777665 46789999999999999999999
Q ss_pred CCeEEEEEcCCCc
Q psy6522 563 YGHLLVYGLGGFK 575 (1407)
Q Consensus 563 DG~I~Iwdl~sg~ 575 (1407)
||+|+|||+....
T Consensus 305 D~~v~iWd~~~~d 317 (318)
T 4ggc_A 305 DETLRLWRCFELD 317 (318)
T ss_dssp TTEEEEECCSCCC
T ss_pred CCeEEEEECCCCC
Confidence 9999999987653
No 98
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=291.83 Aligned_cols=297 Identities=16% Similarity=0.144 Sum_probs=236.9
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEeCCC-CceE-EEEeccCCceEEEEeccCCCCCc
Q psy6522 230 LWRARDGKLLATLRGCSGEISDIAIDNR---NILLAAGTVDKTIRIWNLQT-LAPI-SVLVGHQGIITGVNFCPLEVNGF 304 (1407)
Q Consensus 230 IWDl~tg~~l~tl~gH~~~ItsLafSpD---g~lLaSgs~DGtIrVWDl~t-g~~v-~~l~~H~~~VtsLafspd~~~~~ 304 (1407)
.|+....+.+..+.+|.+.|++|+|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---- 98 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG---- 98 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS----
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC----
Confidence 3455667788889999999999999999 59999999999999999987 5554 7888999999999999976
Q ss_pred eEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEE--CCCCceEEEeeCCceEEEEeccCCCCCc
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF--SPGGLFLATGSGDHHVRVYKMDGVDSPL 382 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vaf--Spdg~~Lasgs~DG~I~IwDl~~~~~~~ 382 (1407)
.+|++++.||.|++||+.+..... ...|...|.+++| ++++.+|++++.||.|++||+... .
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~ 162 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS---N 162 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS---S
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC---c
Confidence 899999999999999998774222 1235688999999 999999999999999999999533 3
Q ss_pred eeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC
Q psy6522 383 GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR 462 (1407)
Q Consensus 383 ~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~ 462 (1407)
.+..+..+ ..+.++.+.+ ..+++++.++.+.+|++........... ......+.++++.++..
T Consensus 163 ~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 163 PMMVLQLP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIE--------------SPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp CSEEEECS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECC--------------CSCSSCEEEEEEEECTT
T ss_pred EEEEEecC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhcc--------------ccccCCCceEEEcccCC
Confidence 34444444 3555666654 4889999999999999987654332211 11233445555544444
Q ss_pred E----EEEEEecCCeEEEEECCCC---ceEEEEecCCC------------CeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 463 W----VITAINFNFQIKIWDAFNG---DLVQVLKGHTN------------EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 463 ~----Lasgs~~DG~I~IWDl~tg---~~l~~l~gH~~------------~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
. +++++. ||.|++||+... ..+..+.+|.. .|++++|+| ++.+|++|+.||.|+|||+.
T Consensus 226 ~~~~~~~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 226 NKPTGFALGSI-EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp SCEEEEEEEET-TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETT
T ss_pred CCCCeEEEecC-CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECC
Confidence 3 888887 999999999987 56788888876 799999999 99999999999999999999
Q ss_pred CCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcC
Q psy6522 524 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLG 572 (1407)
Q Consensus 524 sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~ 572 (1407)
++ ..+..+. .+...|.+++|+|||++||+++.|+....|++-
T Consensus 304 ~~--~~~~~~~-----~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 304 AR--TKLKTSE-----QLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp TT--EEEEECC-----CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred CC--cEEEEec-----CCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 88 6666554 457899999999999999999998865555443
No 99
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.9e-30 Score=295.76 Aligned_cols=256 Identities=20% Similarity=0.275 Sum_probs=203.9
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeE
Q psy6522 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~v 318 (1407)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++.. ++.+|++++.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEE
Confidence 457899999999999999999999999999999998764 467889999999999998631 2379999999999999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
||+.++.... ...+..|...|.+++|+|+ +.+|++|+.|+.|++|++...........+.+|...|.+
T Consensus 86 Wd~~~~~~~~----------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 86 WREENGTWEK----------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA 155 (316)
T ss_dssp ECCSSSCCCE----------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred EECCCCcceE----------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence 9987652111 1123467788999999998 789999999999999999543222223445679999999
Q ss_pred EEEcCC-----------------CCEEEEEeCCCeEEEEEccCCc-eEEeeeccCcCCCCCccccccccccccEEEEEEC
Q psy6522 397 IQWSHS-----------------HLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD 458 (1407)
Q Consensus 397 IafSpd-----------------g~~LaSgs~DGtI~IWDl~t~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS 458 (1407)
++|+|+ +.+|++|+.|++|+|||+.... +.. ......|...|.+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~--------------~~~l~~h~~~V~~v~~s 221 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE--------------EQKLEAHSDWVRDVAWA 221 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE--------------EECCBCCSSCEEEEECC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce--------------eeecccCCCceEEEEec
Confidence 999997 4689999999999999987542 111 11224578899999999
Q ss_pred CCC----CEEEEEEecCCeEEEEECCCC---c-eEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 459 ASD----RWVITAINFNFQIKIWDAFNG---D-LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 459 pdg----~~Lasgs~~DG~I~IWDl~tg---~-~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
|++ .+|++++. |++|+||++.+. . ....+..|...|++++|+| ++.+|++++.||+|+||+...
T Consensus 222 p~~~~~~~~las~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQ-DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCSSCSCCEEEEEET-TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCCCceEEEEcC-CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 987 78888888 999999998763 1 2345567899999999999 999999999999999999753
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.1e-28 Score=283.33 Aligned_cols=312 Identities=13% Similarity=0.141 Sum_probs=219.3
Q ss_pred EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC----ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc
Q psy6522 240 ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC 315 (1407)
Q Consensus 240 ~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg----~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt 315 (1407)
..+.+|.+.|++|+|+|++++||+|+.||.|+|||+.++ +.+..+.+|...|++++|+|.. ++.+|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCe
Confidence 356799999999999999999999999999999999876 4667788999999999999831 1389999999999
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEE-------
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILE------- 386 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~------- 386 (1407)
|++||+..+...... ........+..|...|.+++|+|+ +.+|++++.||.|++||+........+..
T Consensus 83 v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 83 VKLWEEDPDQEECSG---RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEEECTTSCTTSS---CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEEecCCCcccccc---cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 999999876322110 011222334567789999999999 99999999999999999965433222111
Q ss_pred ---EeecCCCcceEEEcCC---CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC
Q psy6522 387 ---VEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 460 (1407)
Q Consensus 387 ---l~~h~~~V~sIafSpd---g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd 460 (1407)
...|...+.+++|+|+ +.+|++++.++.+.+|+...+..... .....|...|++++|+|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA--------------AKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE--------------EECCCCCSCEEEEEECCC
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee--------------eecCCCCcceeEEEECCC
Confidence 1257788999999997 88999999999998888776654221 122347789999999999
Q ss_pred C----CEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEe----CCCcEEEEECCCCCccceee
Q psy6522 461 D----RWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG----HDGLIIIWDILSSKQRGYKW 532 (1407)
Q Consensus 461 g----~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs----~DG~V~IWDi~sgk~~~l~~ 532 (1407)
+ .+|++++. ||.|++||+.++........+...+.....++ ....++.+. ....+.+|+.... ..+..
T Consensus 226 ~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 301 (351)
T 3f3f_A 226 IGRWYQLIATGCK-DGRIRIFKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQV--ELLSE 301 (351)
T ss_dssp SSCSSEEEEEEET-TSCEEEEEEEECC----------------------------------------CCSEEE--EEEEE
T ss_pred CCCcceEEEEEcC-CCeEEEEeCCCCcCccccCCcccceeccCCCc-ccccccccccccccceeeeecccccc--cEEEE
Confidence 8 78888887 99999999988766555444444444444444 333444433 3344555554443 33433
Q ss_pred eeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccc
Q psy6522 533 FHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQN 579 (1407)
Q Consensus 533 ~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~ 579 (1407)
+. .|...|++++|+|++++|++++.||.|+||++.+++.+..
T Consensus 302 ~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 302 HD-----DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EC-----TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred Ee-----cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 33 4567899999999999999999999999999998876543
No 101
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=7.8e-29 Score=300.16 Aligned_cols=284 Identities=20% Similarity=0.336 Sum_probs=233.3
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec
Q psy6522 243 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322 (1407)
Q Consensus 243 ~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~ 322 (1407)
.+|...|++++| ++++|++|+.||.|+|||+.+++.+..+.+|.+.|.+++|. + .+|++|+.||+|++||+.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~----~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E----RVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S----SEEEEEETTSCEEEEESS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--C----CEEEEEcCCCeEEEEECC
Confidence 457778998887 78899999999999999999999999999999999999993 3 799999999999999998
Q ss_pred cccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC
Q psy6522 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402 (1407)
Q Consensus 323 t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd 402 (1407)
++.... .+..|...|.+++|++ .+|++|+.||.|++||+...........+.+|...|.+++| +
T Consensus 202 ~~~~~~------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 202 TGEMLN------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp SCCEEE------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--E
T ss_pred CCcEEE------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--C
Confidence 774322 2335668899999974 59999999999999999655444444667889999999999 6
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy6522 403 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 482 (1407)
Q Consensus 403 g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg 482 (1407)
+.+|++|+.||.|++||+.+++..... ..+...|.+++| ++.+|++++. ||.|++||+.++
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------~~~~~~v~~~~~--~~~~l~~g~~-dg~i~iwd~~~~ 326 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTL----------------NGHKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECG 326 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEE----------------ECCSSCEEEEEE--ETTEEEEEET-TSCEEEEETTTC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEE----------------cCCCCcEEEEEe--CCCEEEEEeC-CCeEEEEECCCC
Confidence 789999999999999999988754432 246678889988 4788999988 999999999999
Q ss_pred ceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCcc-------ceeeeeeeecCCCCCceeEEEECCCCC
Q psy6522 483 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR-------GYKWFHNIVEGQGEGALFDGKWSPDGT 555 (1407)
Q Consensus 483 ~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~-------~l~~~~~~~~g~~~~~I~slafSpDG~ 555 (1407)
+++..+.+|...|.+++| ++.+|++|+.||.|+|||+.++... .+..+. .|.+.|++++| ++.
T Consensus 327 ~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-----EHSGRVFRLQF--DEF 396 (435)
T ss_dssp CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-----CCSSCCCCEEE--CSS
T ss_pred CEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-----CCCCCeEEEEe--CCC
Confidence 999999999999999998 5689999999999999999765211 333333 46788999999 889
Q ss_pred EEEEEeCCCeEEEEEcCCCccccc
Q psy6522 556 TCALTDSYGHLLVYGLGGFKRPQN 579 (1407)
Q Consensus 556 ~LAsgs~DG~I~Iwdl~sg~~~~~ 579 (1407)
+|++++.||.|++|++.++.....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~~~ 420 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAAQA 420 (435)
T ss_dssp CEEECCSSSEEEEEC---------
T ss_pred EEEEEeCCCEEEEEECCCCCCccc
Confidence 999999999999999988765433
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-29 Score=302.59 Aligned_cols=299 Identities=17% Similarity=0.213 Sum_probs=232.0
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCC---Cc---eEEE
Q psy6522 212 FDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQT---LA---PISV 283 (1407)
Q Consensus 212 fSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-~gH~~~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~t---g~---~v~~ 283 (1407)
|+|++..+++++ +|+ .+++++..+ .+|.+.|++|+|+| ++.+||+|+.||+|+|||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 678888777665 487 578889999 89999999999999 999999999999999999976 33 2333
Q ss_pred EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE
Q psy6522 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 363 (1407)
Q Consensus 284 l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las 363 (1407)
+ .|...|++++|+|++ .+|++++.||+|++||+........... ... ..+..+.|++++
T Consensus 108 ~-~h~~~v~~~~~~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~---------~~~--~~i~~~~~~~~~----- 166 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNF----DAFAVSSKDGQIIVLKVNHYQQESEVKF---------LNC--ECIRKINLKNFG----- 166 (437)
T ss_dssp E-ECSSCEEEEEECTTS----SEEEEEETTSEEEEEEEEEEEETTEEEE---------EEE--EEEEEEEGGGGS-----
T ss_pred c-cCCCCEEEEEEeCCC----CEEEEEeCCCEEEEEEeccccCCceeec---------ccc--ceeEEEEccCcc-----
Confidence 3 599999999999976 8999999999999999853200000000 000 123333333321
Q ss_pred eeCCceEEEEeccCCCCCceeEEEeecCCCcceEE--EcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcc
Q psy6522 364 GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQ--WSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441 (1407)
Q Consensus 364 gs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIa--fSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~ 441 (1407)
+...+.++. +++++.+|++|+.||.|++||+.+++......
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------- 209 (437)
T 3gre_A 167 --------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE----------- 209 (437)
T ss_dssp --------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-----------
T ss_pred --------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-----------
Confidence 334455555 67889999999999999999999887544321
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe-cCCCCeEEEEEecC---CCCEEEEEeCCCcE
Q psy6522 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-GHTNEVFVLESHPF---DSRVLLSAGHDGLI 517 (1407)
Q Consensus 442 ~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~-gH~~~V~sLafsP~---dg~~LaSgs~DG~V 517 (1407)
...|...|++++|+|++.+|++++. ||.|++||+.+++++..+. .|...|.+++|+|. ++.+|++|+.||.|
T Consensus 210 ---~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 210 ---NSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp ---CCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred ---cCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 0126678999999999999999998 9999999999999999987 78889999977762 56799999999999
Q ss_pred EEEECCCCCccceeeeeee--------------------ec-CCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 518 IIWDILSSKQRGYKWFHNI--------------------VE-GQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 518 ~IWDi~sgk~~~l~~~~~~--------------------~~-g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
+|||+.++ ..+..+... +. ..+...|++++|+ ++++|++++.||.|++||+.+++.
T Consensus 286 ~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 286 TIWNFVKG--HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEETTTT--EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred EEEEcCCC--cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 99999988 555554311 00 1255679999999 889999999999999999999988
Q ss_pred ccccCC
Q psy6522 577 PQNIPR 582 (1407)
Q Consensus 577 ~~~lp~ 582 (1407)
...+..
T Consensus 363 ~~~~~~ 368 (437)
T 3gre_A 363 SKAVIS 368 (437)
T ss_dssp CEEEEC
T ss_pred ceEEec
Confidence 766653
No 103
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=318.77 Aligned_cols=318 Identities=12% Similarity=0.079 Sum_probs=240.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceE
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPI 281 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v 281 (1407)
.-...|.+|+|+|||+++||++.|++|+ |...++.+ .+|...|.+++|+|+| .++++.+|+.. ..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQ---QN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCC---SS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCC---Cc
Confidence 3457899999999999999999999999 76666544 7999999999999998 46666666543 22
Q ss_pred EEEe-ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce
Q psy6522 282 SVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360 (1407)
Q Consensus 282 ~~l~-~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~ 360 (1407)
..+. .|...|.+++|+|++ .+|++++.||.|++||... ...... +. ..-....+.+++|||+|++
T Consensus 78 ~~~~~~~~~~V~~vawSPdG----~~LAs~s~dg~V~iwd~~~--~l~~l~-~~-------~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPID----DWMAVLSNNGNVSVFKDNK--MLTNLD-SK-------GNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSS----SCEEEEETTSCEEEEETTE--EEEECC-CS-------SCSTTTCEEEEEECSSSSC
T ss_pred eEeecCCCCcEEEEEECCCC----CEEEEEeCCCcEEEEeCCc--eeeecc-CC-------CccccccEEEEEEcCCCCE
Confidence 2222 568899999999987 9999999999999999533 111100 00 0000135999999999999
Q ss_pred EEEeeCCceEEEEeccCCCC--C--ceeEEE----eecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeecc
Q psy6522 361 LATGSGDHHVRVYKMDGVDS--P--LGILEV----EEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDM 432 (1407)
Q Consensus 361 Lasgs~DG~I~IwDl~~~~~--~--~~i~~l----~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~ 432 (1407)
||+|+.||.|+||++.+... + ..+..+ .+|...|.+++|+|+| |++++.|++|++||+..+....
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~----- 216 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQP----- 216 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCC-----
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcccc-----
Confidence 99999999999999964321 1 134555 5677899999999999 8889999999999998765210
Q ss_pred CcCCCCCcccccc-ccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE--ecCCCCEEE
Q psy6522 433 NTCLPHTKETSDE-TNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES--HPFDSRVLL 509 (1407)
Q Consensus 433 ~~~~~~~~~~~~~-~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLaf--sP~dg~~La 509 (1407)
..... ..|...|.+++|+ |+.|++++ ++.|++||+.+++......+|...|+.++| +| ++..|+
T Consensus 217 --------~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La 283 (588)
T 2j04_A 217 --------VSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILL 283 (588)
T ss_dssp --------CEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEE
T ss_pred --------ceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEE
Confidence 00001 2366789999999 67888775 799999999988875555589999999999 99 999999
Q ss_pred EEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC-----Cce
Q psy6522 510 SAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP-----REL 584 (1407)
Q Consensus 510 Sgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp-----~~v 584 (1407)
+++.||+ ++|.... ++|+||+..+++. |+.+++|++..+. +..+. ..+
T Consensus 284 ~a~edG~-klw~~d~-----------------------~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~v 336 (588)
T 2j04_A 284 MSNKTSY-KVLLEDE-----------------------LHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGI 336 (588)
T ss_dssp ECSSCEE-EEEESSS-----------------------EEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEE
T ss_pred EEcCCCC-EEEeecc-----------------------EEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEE
Confidence 9999999 9999741 4477788777764 7788888775544 22222 257
Q ss_pred EecCCCcEEEe
Q psy6522 585 FFHTDYRTLNR 595 (1407)
Q Consensus 585 ~Fs~D~~~Lv~ 595 (1407)
.|+|||..++.
T Consensus 337 a~SPdG~~lA~ 347 (588)
T 2j04_A 337 SLSPDGYSIAI 347 (588)
T ss_dssp EECTTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 78888877763
No 104
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=327.64 Aligned_cols=263 Identities=22% Similarity=0.303 Sum_probs=218.2
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcC--CCcEEEEEeCCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q psy6522 197 HYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRAR--DGKLLATLRGCSGEISDIAIDNR--NILLAAGTVDKTIRI 272 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~--tg~~l~tl~gH~~~ItsLafSpD--g~lLaSgs~DGtIrV 272 (1407)
..++.||.+.|+|++|+|+|++|++|+.||.|+|||+. ++..+.++.+|.+.|++++|+++ +++|++|+.||.|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999999999999999999999998 56788899999999999999988 999999999999999
Q ss_pred EeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 273 WNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 273 WDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
||+.++. .+..+.+|...|++++|+|+. .+.+|++|+.||.|++||+......... ....|...|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~~l~sgs~dg~I~vwdl~~~~~~~~~----------~~~~~~~~v~ 149 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHE--YGPLLLVASSDGKVSVVEFKENGTTSPI----------IIDAHAIGVN 149 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSEEEEEECCSSSCCCCE----------EEECCSSCEE
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCC--CCCEEEEEeCCCcEEEEEeecCCCccee----------EeecCCCceE
Confidence 9999887 777888999999999999971 1389999999999999999876332221 2235668899
Q ss_pred EEEECC-------------CCceEEEeeCCceEEEEeccCCCCC-ceeEEEeecCCCcceEEEcCC---CCEEEEEeCCC
Q psy6522 351 CSSFSP-------------GGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHS---HLRFVSGSRDG 413 (1407)
Q Consensus 351 ~vafSp-------------dg~~Lasgs~DG~I~IwDl~~~~~~-~~i~~l~~h~~~V~sIafSpd---g~~LaSgs~DG 413 (1407)
+++|+| ++.+|++|+.||.|++||+...... .....+.+|...|.+++|+|+ +.+|++|+.||
T Consensus 150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence 999999 5899999999999999999654332 445567889999999999999 89999999999
Q ss_pred eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy6522 414 TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 483 (1407)
Q Consensus 414 tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~ 483 (1407)
.|++||+.++.... .........+...|++++|+|++.+|++++. ||.|++|++.++.
T Consensus 230 ~I~iwd~~~~~~~~-----------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~-Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 230 TCIIWTQDNEQGPW-----------KKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEG 287 (753)
T ss_dssp CEEEEEESSSSSCC-----------BCCBSSSSCCSSCCCCEEECTTTCCEEEECS-SSCEECCBCCSSS
T ss_pred EEEEecCCCCCCcc-----------eeEEeccCCCCCceEEEEEcCCCCEEEEEcC-CCEEEEEecCCCC
Confidence 99999998764111 0111222446778999999999999999998 9999999998643
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.3e-27 Score=279.74 Aligned_cols=334 Identities=10% Similarity=0.015 Sum_probs=252.5
Q ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCCceEEEEeccCCceEEEE
Q psy6522 217 EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVN 295 (1407)
Q Consensus 217 ~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lL-aSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLa 295 (1407)
.++++++.|+.|++||+.+++++..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888899999999999999999998775 48999999999977 666689999999999999998887666 899999
Q ss_pred eccCCCCCceEE-EEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceE-EEeeCCceEEEE
Q psy6522 296 FCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVY 373 (1407)
Q Consensus 296 fspd~~~~~~~L-aSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~L-asgs~DG~I~Iw 373 (1407)
|+|++ .+| ++++.++.|++||+.++....... +...+.+++|+|+++.| ++++.++.|++|
T Consensus 81 ~spdg----~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 143 (391)
T 1l0q_A 81 VSPDG----KQVYVTNMASSTLSVIDTTSNTVAGTVK-------------TGKSPLGLALSPDGKKLYVTNNGDKTVSVI 143 (391)
T ss_dssp ECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE-------------CSSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ECCCC----CEEEEEECCCCEEEEEECCCCeEEEEEe-------------CCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 99976 555 555577999999998774332221 12568999999999977 677889999999
Q ss_pred eccCCCCCceeEEEeecCCCcceEEEcCCCCEE-EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccE
Q psy6522 374 KMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 452 (1407)
Q Consensus 374 Dl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~L-aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~V 452 (1407)
|+.. ...+..+..+ ..+.+++|+|++.+| ++++.++.|++||+.+++..... .+...+
T Consensus 144 d~~~---~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------------~~~~~~ 202 (391)
T 1l0q_A 144 NTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV-----------------KVEAAP 202 (391)
T ss_dssp ETTT---TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------ECSSEE
T ss_pred ECCC---CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE-----------------ecCCCc
Confidence 9843 3334444444 557999999999977 67788999999999987654322 134568
Q ss_pred EEEEECCCCCEEEEEEe--cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEE-EEEeCCCcEEEEECCCCCccc
Q psy6522 453 TMVAWDASDRWVITAIN--FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVL-LSAGHDGLIIIWDILSSKQRG 529 (1407)
Q Consensus 453 tslafSpdg~~Lasgs~--~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~L-aSgs~DG~V~IWDi~sgk~~~ 529 (1407)
.+++|+|++++|++++. .++.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.++ ..
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~--~~ 278 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATN--TI 278 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTT--EE
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCC--cE
Confidence 89999999999999884 48999999999999999998776 478999999 88766 67788999999999988 55
Q ss_pred eeeeeeeecCCC----------CCceeEEEECCCC----------CEEEEEeCCCeEEEEEcCCCccccccCCceEecCC
Q psy6522 530 YKWFHNIVEGQG----------EGALFDGKWSPDG----------TTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTD 589 (1407)
Q Consensus 530 l~~~~~~~~g~~----------~~~I~slafSpDG----------~~LAsgs~DG~I~Iwdl~sg~~~~~lp~~v~Fs~D 589 (1407)
+..+........ ........|+.+. ..|...+.+..+++|++.+|...........|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~~~~~~~~~~~~ 358 (391)
T 1l0q_A 279 TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSET 358 (391)
T ss_dssp EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEECSSSCEECCSSC
T ss_pred EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccCcCCCeEEeCCC
Confidence 554431100000 0001112232221 23555566788999999988764333335678888
Q ss_pred CcEEE
Q psy6522 590 YRTLN 594 (1407)
Q Consensus 590 ~~~Lv 594 (1407)
|.+.+
T Consensus 359 g~y~~ 363 (391)
T 1l0q_A 359 GIYTV 363 (391)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 87776
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=4e-29 Score=298.97 Aligned_cols=286 Identities=15% Similarity=0.152 Sum_probs=232.5
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCC----cEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCC--
Q psy6522 207 VFCVLFDKLGEVI-VTGADDLLIKLWRARDG----KLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTL-- 278 (1407)
Q Consensus 207 V~~vafSpdG~~L-aTGS~DG~V~IWDl~tg----~~l~tl~gH~~~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~tg-- 278 (1407)
..+++++|+...+ ++|+.||.|+||++.+. ..+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4468899886544 45788999999999654 24556789999999999999 9999999999999999999987
Q ss_pred -----ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 279 -----APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 279 -----~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
.++..+.+|...|.+++|+|++ ..+|++++.||.|++||+.++....... ...|...|.+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~~~ 183 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTA---QNVLLSAGCDNVILVWDVGTGAAVLTLG----------PDVHPDTIYSVD 183 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSB---TTEEEEEETTSCEEEEETTTTEEEEEEC----------TTTCCSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCC---CCEEEEEcCCCEEEEEECCCCCccEEEe----------cCCCCCceEEEE
Confidence 6788999999999999999964 2699999999999999998763322210 135668899999
Q ss_pred ECCCCceEEEeeCCceEEEEeccCCCCCceeEEE-eecCCC-cceEEEcCCCCEEEEE---eCCCeEEEEEccCCceEEe
Q psy6522 354 FSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDK-VDSIQWSHSHLRFVSG---SRDGTALIWYYKCSQWRFI 428 (1407)
Q Consensus 354 fSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-~~h~~~-V~sIafSpdg~~LaSg---s~DGtI~IWDl~t~~~~~~ 428 (1407)
|+|++.+|++++.||.|++||+.. ...+..+ ..|.+. +.+++|+|++.+|++| +.|+.|++||+.++.....
T Consensus 184 ~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 184 WSRDGALICTSCRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp ECTTSSCEEEEETTSEEEEEETTT---TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred ECCCCCEEEEEecCCcEEEEeCCC---CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 999999999999999999999943 3455555 677766 8999999999999999 7999999999987652110
Q ss_pred eeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce-EEEEec--CCCCeEEEEEecCCC
Q psy6522 429 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL-VQVLKG--HTNEVFVLESHPFDS 505 (1407)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~-l~~l~g--H~~~V~sLafsP~dg 505 (1407)
.....+...+.+++|+|++.+|++++..||.|++||+.+++. +..+.. |...|.+++|+| ++
T Consensus 261 --------------~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~ 325 (402)
T 2aq5_A 261 --------------LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KR 325 (402)
T ss_dssp --------------EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GG
T ss_pred --------------EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-cc
Confidence 011235567899999999999987765599999999999874 555554 458999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q psy6522 506 RVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 506 ~~LaSgs~DG~V~IWDi~sg 525 (1407)
.++++ .++.+++|++.++
T Consensus 326 ~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 326 GLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp GSCGG--GTEEEEEEEEETT
T ss_pred cccee--cceeEEEEEcCCC
Confidence 77764 5679999999876
No 107
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=5.7e-28 Score=280.71 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=220.4
Q ss_pred CceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCC---CCEEEEEECCCeEEEEEcCCCc-EEEEEeCCCCCeEEEEE--
Q psy6522 181 SRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKL---GEVIVTGADDLLIKLWRARDGK-LLATLRGCSGEISDIAI-- 254 (1407)
Q Consensus 181 ~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpd---G~~LaTGS~DG~V~IWDl~tg~-~l~tl~gH~~~ItsLaf-- 254 (1407)
++.+.+|......... ....+|...|++++|+|+ |++|++|+.||.|+|||+.+++ .+..+.+|...|.+++|
T Consensus 43 d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp CEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred CcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 6778888765433332 223489999999999999 7999999999999999999998 89999999999999954
Q ss_pred ----cCCCCEEEEEECCCeEEEEeCCCCc-eEEEEeccCC----ceEEEE----eccCCCCCceEEEEEecCCceeEEee
Q psy6522 255 ----DNRNILLAAGTVDKTIRIWNLQTLA-PISVLVGHQG----IITGVN----FCPLEVNGFNYLASTSTDGCIGFWKY 321 (1407)
Q Consensus 255 ----SpDg~lLaSgs~DGtIrVWDl~tg~-~v~~l~~H~~----~VtsLa----fspd~~~~~~~LaSgs~DGtI~vWDl 321 (1407)
++++++|++|+.|+.|+|||+.++. ++..+..|.+ .|.+++ |+|++ .+|++++.||.|++||+
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE----RVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC----CEEEEEETTSEEEEEET
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC----CEEEEEccCCeEEEEEC
Confidence 7899999999999999999999887 7888876665 899998 55654 89999999999999999
Q ss_pred ccccccceeeeccccccccccCCCCcceEEEEECC---CCceEEEeeCCceEEEEeccCCCCCcee--EEEeecCCCcce
Q psy6522 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVDSPLGI--LEVEEHSDKVDS 396 (1407)
Q Consensus 322 ~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp---dg~~Lasgs~DG~I~IwDl~~~~~~~~i--~~l~~h~~~V~s 396 (1407)
.+...... ..+...|.+++|+| ++.+|++++.||.|++||+........+ ..+.+|...|.+
T Consensus 198 ~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~ 264 (357)
T 3i2n_A 198 RNMALRWE-------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQ 264 (357)
T ss_dssp TTTEEEEE-------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEE
T ss_pred ccCceeee-------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEE
Confidence 87643111 23457899999999 9999999999999999999543322222 234589999999
Q ss_pred EEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCC---CCccccccccccccEEEEEECCCCCEEE-EEEecC
Q psy6522 397 IQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP---HTKETSDETNKKIKVTMVAWDASDRWVI-TAINFN 471 (1407)
Q Consensus 397 IafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~VtslafSpdg~~La-sgs~~D 471 (1407)
++|+|++. +|++++.||.|++||+..+.............. ..........|...|++++|+|++.+|+ +++. |
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~-d 343 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF-D 343 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET-T
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC-C
Confidence 99999998 899999999999999987653221100000000 0011223355788999999999999998 5666 9
Q ss_pred CeEEEEECCCCce
Q psy6522 472 FQIKIWDAFNGDL 484 (1407)
Q Consensus 472 G~I~IWDl~tg~~ 484 (1407)
|.|+|||+.+.++
T Consensus 344 ~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 344 QTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEECCCccc
Confidence 9999999987654
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=288.28 Aligned_cols=328 Identities=11% Similarity=0.114 Sum_probs=227.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc-----------eEEEEeccC------------CceEEEEeccCCC
Q psy6522 245 CSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA-----------PISVLVGHQ------------GIITGVNFCPLEV 301 (1407)
Q Consensus 245 H~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~-----------~v~~l~~H~------------~~VtsLafspd~~ 301 (1407)
|.+.|++|+|+|++.+||+|+.||.|+||++.++. .+..+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~- 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK- 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC-
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC-
Confidence 67899999999999999999999999999998877 577889998 889999999964
Q ss_pred CCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC
Q psy6522 302 NGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP 381 (1407)
Q Consensus 302 ~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~ 381 (1407)
+..+|++++.|++|++|++............ ..+.+.+...... ....+......+ . +...
T Consensus 106 -~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~---------~~~~g~~~~~~~~-~~~~~~~~~~~~-~-~~~~------ 166 (447)
T 3dw8_B 106 -NAAQFLLSTNDKTIKLWKISERDKRPEGYNL---------KEEDGRYRDPTTV-TTLRVPVFRPMD-L-MVEA------ 166 (447)
T ss_dssp -SSSEEEEEECSSCEEEEEEEEEEEEEECCSC---------C--------CCCC-CSCCCCEEEEEE-E-EEEE------
T ss_pred -CcceEEEeCCCCeEEEEecccccCCcceecc---------cCccccccCcccc-cceEeccccchh-e-eeec------
Confidence 2368999999999999999875322110000 0000100000000 000000000000 0 0000
Q ss_pred ceeEE-EeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC
Q psy6522 382 LGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 460 (1407)
Q Consensus 382 ~~i~~-l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd 460 (1407)
..... ..+|...|.+++|+|++.+|++| .||.|++||+.+.......+... ......|...|.+++|+|+
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK--------PANMEELTEVITAAEFHPN 237 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC--------CSSGGGCCCCEEEEEECSS
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc--------cccccccCcceEEEEECCC
Confidence 11112 35799999999999999999998 89999999998433222111110 1123457789999999999
Q ss_pred C-CEEEEEEecCCeEEEEECCCCce----EEEEecCCC------------CeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 461 D-RWVITAINFNFQIKIWDAFNGDL----VQVLKGHTN------------EVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 461 g-~~Lasgs~~DG~I~IWDl~tg~~----l~~l~gH~~------------~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
+ .+|++++. ||.|++||+.+++. +..+.+|.. .|.+++|+| ++.+|++++. |.|+|||+.
T Consensus 238 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 238 SCNTFVYSSS-KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp CTTEEEEEET-TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETT
T ss_pred CCcEEEEEeC-CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCC
Confidence 8 89999988 99999999999887 788998886 899999999 9999999999 999999998
Q ss_pred C-CCccceeeeeeeecC----------CCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccccc------------
Q psy6522 524 S-SKQRGYKWFHNIVEG----------QGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI------------ 580 (1407)
Q Consensus 524 s-gk~~~l~~~~~~~~g----------~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~l------------ 580 (1407)
+ + ..+..+...... .....++.++|+|++++|++++.||.|+|||+.+++.+...
T Consensus 315 ~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 392 (447)
T 3dw8_B 315 MEN--RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVL 392 (447)
T ss_dssp CCS--SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBC
T ss_pred CCc--cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccccccc
Confidence 7 5 555555410000 00001345999999999999999999999999988764200
Q ss_pred --------------------------CCceEecCCCcEEEecCCCeeeEeeC
Q psy6522 581 --------------------------PRELFFHTDYRTLNRPNGLFEPTYDE 606 (1407)
Q Consensus 581 --------------------------p~~v~Fs~D~~~Lv~~~~~~~~v~Dv 606 (1407)
...+.|||++..|+......+-+|..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 393 KPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp CCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred CCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 11478999999998665544336653
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-29 Score=306.21 Aligned_cols=329 Identities=12% Similarity=0.055 Sum_probs=249.7
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec
Q psy6522 243 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322 (1407)
Q Consensus 243 ~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~ 322 (1407)
+.....|.+++|+|||++||+++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+..
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~ 75 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-----------FENKLDFELAQ 75 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-----------CCCTTTTSCCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-----------CcceEEEEeCC
Confidence 34568899999999999999999999999 76555544 7999999999999964 46666666543
Q ss_pred cccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCC-----CcceE
Q psy6522 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSD-----KVDSI 397 (1407)
Q Consensus 323 t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~-----~V~sI 397 (1407)
.. .... ..+...|.+++|||+|.+||+++.||.|+||+..+ .+..+. |.. .|.++
T Consensus 76 ~~---~~~~-----------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 76 QN---GLLN-----------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCF 135 (588)
T ss_dssp SS---CSST-----------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEE
T ss_pred Cc---eEee-----------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEE
Confidence 22 1110 02247899999999999999999999999999632 444455 665 49999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccCCceEE---eeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy6522 398 QWSHSHLRFVSGSRDGTALIWYYKCSQWRF---IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 474 (1407)
Q Consensus 398 afSpdg~~LaSgs~DGtI~IWDl~t~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I 474 (1407)
+|||+|++|++|+.||+|+|||+.++.... ..+ ........+|...|.+++|+|+| +++++. |+.|
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l--------~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tV 204 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE--------SSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSV 204 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEE--------EEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceee--------eeeecccccccccEEEEEEcCCc--EEEEeC-CCeE
Confidence 999999999999999999999998764200 000 00011123467899999999999 777777 9999
Q ss_pred EEEECCCCce---EEEE-ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEE
Q psy6522 475 KIWDAFNGDL---VQVL-KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKW 550 (1407)
Q Consensus 475 ~IWDl~tg~~---l~~l-~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slaf 550 (1407)
++||+..+.. ..++ .+|...|.+++|+ +.+||+++ +|+|++||+.++ .... +. . .|...|.+++|
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~--~~~~-~~---~-gh~~~V~~va~ 273 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNY--SISS-LK---T-GSLENFHIIPL 273 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTT--EEEE-EE---C-SCCSCCCEEEE
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCC--eEEE-EE---c-CCCceEEEEEe
Confidence 9999988773 4567 4888999999998 48899887 699999999887 3221 11 1 36789999999
Q ss_pred --CCCCCEEEEEeCCCeEEEEEcCCCccccccCCceEecCCCcEEEecCCCeeeEeeCCCCCCCCcCCCCcccCCCCccC
Q psy6522 551 --SPDGTTCALTDSYGHLLVYGLGGFKRPQNIPRELFFHTDYRTLNRPNGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPY 628 (1407)
Q Consensus 551 --SpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp~~v~Fs~D~~~Lv~~~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~~y 628 (1407)
+||++.|++++.+|+ ++|.+. .+.|++|+..++.. ...+.+|+...+.. ..+.. ..-+.|..|
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d----------~~~~spd~~l~a~~-d~~v~lW~~~g~~l-~~~~~--~~~I~~va~ 338 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLED----------ELHVTADNIIAPYL-EKKFKKWSTIWNEF-NNYET--TLVIHGISL 338 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESS----------SEEEECCCSSHHHH-HHHHHHTTTTTTSS-SSSCC--EEEEEEEEE
T ss_pred eeCCCCCEEEEEcCCCC-EEEeec----------cEEECCCceEEEEc-CCEEEEEECCCCce-eeecc--ceEEEEEEE
Confidence 999999999999999 999987 25699999877754 33344887655532 22222 222778899
Q ss_pred CCCCceEEeCCCCCCC
Q psy6522 629 PPEVQRLVPGRENADD 644 (1407)
Q Consensus 629 ppd~Q~Lv~GR~~sdn 644 (1407)
+|+|+.+|.+-...++
T Consensus 339 SPdG~~lA~~~~i~~~ 354 (588)
T 2j04_A 339 SPDGYSIAIVYDMERV 354 (588)
T ss_dssp CTTSSEEEEEEEEECS
T ss_pred CCCCCEEEEEEeccCc
Confidence 9999999988665444
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.1e-27 Score=280.33 Aligned_cols=323 Identities=9% Similarity=0.061 Sum_probs=249.4
Q ss_pred CCCCEEEEE---EcCCCCEEEEEE--------------CCC--eEEEEEcCCC--cEEEEEeCCCCCeEEEEEcCCCCEE
Q psy6522 203 HLSAVFCVL---FDKLGEVIVTGA--------------DDL--LIKLWRARDG--KLLATLRGCSGEISDIAIDNRNILL 261 (1407)
Q Consensus 203 H~~~V~~va---fSpdG~~LaTGS--------------~DG--~V~IWDl~tg--~~l~tl~gH~~~ItsLafSpDg~lL 261 (1407)
+...++.++ |+|+++.+++.+ .++ .|.+||..++ +.+..+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 344566666 777666555432 233 3444444445 566666654 456699999988888
Q ss_pred EEEECCCeEEEEeCCCCceEE-----EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccc
Q psy6522 262 AAGTVDKTIRIWNLQTLAPIS-----VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 336 (1407)
Q Consensus 262 aSgs~DGtIrVWDl~tg~~v~-----~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~ 336 (1407)
++++.++.|++||+.+++.+. .+.+|.+.|.+++|++++ .++++++.|+.|++||+.++......
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~s~~~d~~v~~~d~~~~~~~~~~------ 207 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN----ELWVSQMQANAVHVFDLKTLAYKATV------ 207 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT----EEEEEEGGGTEEEEEETTTCCEEEEE------
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC----EEEEEECCCCEEEEEECCCceEEEEE------
Confidence 888889999999999998887 344788899999998866 89999999999999999876433222
Q ss_pred ccccccCCCCcceEEEEECCCCceEEE-eeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-----
Q psy6522 337 MFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS----- 410 (1407)
Q Consensus 337 ~~~~~~~~h~~~I~~vafSpdg~~Las-gs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs----- 410 (1407)
..+...+.+++|+|++.++++ ++.++.|++||+.. ...+..+.. ...+.+++|+|++.+|++++
T Consensus 208 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 208 ------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp ------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 234577899999999998854 45799999999943 233333333 45689999999999999888
Q ss_pred ---CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE
Q psy6522 411 ---RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV 487 (1407)
Q Consensus 411 ---~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~ 487 (1407)
.||.|++||+.+++..... .+...+.+++|+|+++.+++++..++.|++||+.+++.+..
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTI-----------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEE-----------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccCCCeEEEEECCCCcEEeec-----------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 5899999999987644321 23446788999999988877755599999999999998888
Q ss_pred EecCCCCeEEEEEecCCCCEEEEEeC---------------CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC
Q psy6522 488 LKGHTNEVFVLESHPFDSRVLLSAGH---------------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 488 l~gH~~~V~sLafsP~dg~~LaSgs~---------------DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp 552 (1407)
+. +...+.+++|+| ++++|++++. ||.|++||+.++ ..+..+. +...+.+++|+|
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--~~~~~~~------~~~~~~~~~~s~ 410 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--TVKEFWE------AGNQPTGLDVSP 410 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--EEEEEEE------CSSSEEEEEECT
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCC--cEEEEec------CCCCCceEEEcC
Confidence 76 677899999999 8988888876 579999999988 6565554 245789999999
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC
Q psy6522 553 DGTTCALTDS-YGHLLVYGLGG 573 (1407)
Q Consensus 553 DG~~LAsgs~-DG~I~Iwdl~s 573 (1407)
||++|++++. ++.|.+|++..
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999998875 99999999864
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.3e-27 Score=289.52 Aligned_cols=261 Identities=16% Similarity=0.285 Sum_probs=215.8
Q ss_pred EEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCC----------CceEEEEeccCCceEEEEeccCCCCCceEEE
Q psy6522 240 ATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQT----------LAPISVLVGHQGIITGVNFCPLEVNGFNYLA 308 (1407)
Q Consensus 240 ~tl~gH~~~ItsLafSpD-g~lLaSgs~DGtIrVWDl~t----------g~~v~~l~~H~~~VtsLafspd~~~~~~~La 308 (1407)
..+..|.+.|++++|+|+ +.+||+++.||.|+||++.+ ..++..+.+|...|++++|+|++ ..+|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~ 198 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL---NGYLL 198 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS---TTEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC---CCeEE
Confidence 455679999999999997 67999999999999999986 67888999999999999999975 23999
Q ss_pred EEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEE
Q psy6522 309 STSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEV 387 (1407)
Q Consensus 309 Sgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l 387 (1407)
+|+.||.|++|++.......... .....+..|...|.+++|+| ++.+|++++.||.|++||+........+..+
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVI-----DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEE-----ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred EEeCCCeEEEEeCCCCCCCCcee-----ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 99999999999998743221111 11223446778999999999 6789999999999999999655434556677
Q ss_pred eecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCE-EE
Q psy6522 388 EEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRW-VI 465 (1407)
Q Consensus 388 ~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~-La 465 (1407)
..|...|.+|+|+|++. +|++|+.||.|++||++.... .......|...|.+++|+|++.. |+
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------------~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------------KLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---------------CSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC---------------CeEEeecCCCCEEEEEECCCCCCEEE
Confidence 88999999999999987 789999999999999986431 11122347788999999999965 66
Q ss_pred EEEecCCeEEEEECCC--------------CceEEEEecCCCCeEEEEEecCCCC-EEEEEeCCCcEEEEECCCC
Q psy6522 466 TAINFNFQIKIWDAFN--------------GDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 466 sgs~~DG~I~IWDl~t--------------g~~l~~l~gH~~~V~sLafsP~dg~-~LaSgs~DG~V~IWDi~sg 525 (1407)
+++. |+.|+|||+.. .+++..+.+|...|++++|+| ++. +|++++.||.|+||++...
T Consensus 339 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGT-DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEET-TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeC-CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 6666 99999999987 477888899999999999999 777 9999999999999999754
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-27 Score=288.00 Aligned_cols=300 Identities=11% Similarity=0.072 Sum_probs=233.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---EEEEEeCC------------------------------------
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK---LLATLRGC------------------------------------ 245 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~---~l~tl~gH------------------------------------ 245 (1407)
.+|.|++|+++|++|++++ ++.|++||+.+|+ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777765 7799999999998 77666533
Q ss_pred ------------------CCCeEEEEEcCCCCEE-EEEECCCeEEEEeCC--CCceEEEEe--ccCCceEEEEeccCCCC
Q psy6522 246 ------------------SGEISDIAIDNRNILL-AAGTVDKTIRIWNLQ--TLAPISVLV--GHQGIITGVNFCPLEVN 302 (1407)
Q Consensus 246 ------------------~~~ItsLafSpDg~lL-aSgs~DGtIrVWDl~--tg~~v~~l~--~H~~~VtsLafspd~~~ 302 (1407)
.+.|++++|+|++++| ++|+.||.|+|||+. ++..+..+. .|...|++++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-- 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-- 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC--
Confidence 3379999999999996 889899999999999 888888886 567899999999976
Q ss_pred CceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC---CceEEEeeCCceEEEEeccCCC
Q psy6522 303 GFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGSGDHHVRVYKMDGVD 379 (1407)
Q Consensus 303 ~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd---g~~Lasgs~DG~I~IwDl~~~~ 379 (1407)
.+|++++.+|.|.+|++........ ....+..|...|.+++|+|+ +.+|++|+.|+.|++||+...
T Consensus 162 --~~l~~~~~~g~v~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~- 230 (450)
T 2vdu_B 162 --TTVIIADKFGDVYSIDINSIPEEKF--------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC- 230 (450)
T ss_dssp --SEEEEEETTSEEEEEETTSCCCSSC--------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-
T ss_pred --CEEEEEeCCCcEEEEecCCcccccc--------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-
Confidence 8999999999999999877633210 11123356688999999999 999999999999999999432
Q ss_pred CCceeEE-EeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccC--cCC-C------CCcccccccccc
Q psy6522 380 SPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN--TCL-P------HTKETSDETNKK 449 (1407)
Q Consensus 380 ~~~~i~~-l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~--~~~-~------~~~~~~~~~~~~ 449 (1407)
..+.. +.+|...|.+++|+ ++.+|++++.|+.|++||+.+++......... ... . ............
T Consensus 231 --~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 231 --FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp --TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred --ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 33444 56899999999999 99999999999999999999988655432100 000 0 000000011345
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEEC--CCC---ceEEEEecCCCCeEEEEEecCCCCEEEEEeC-------CCcE
Q psy6522 450 IKVTMVAWDASDRWVITAINFNFQIKIWDA--FNG---DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-------DGLI 517 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~DG~I~IWDl--~tg---~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~-------DG~V 517 (1407)
..|..++|+|++++|++++..++.|+||++ .++ .++..+.+| +.|.+++|+| ++ ++++++. +..|
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcce
Confidence 679999999999999999933999999999 565 677888888 8899999999 54 4555433 4557
Q ss_pred EEEECCC
Q psy6522 518 IIWDILS 524 (1407)
Q Consensus 518 ~IWDi~s 524 (1407)
.||.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887654
No 113
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.7e-27 Score=278.64 Aligned_cols=315 Identities=12% Similarity=0.063 Sum_probs=213.1
Q ss_pred EEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEE
Q psy6522 230 LWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLAS 309 (1407)
Q Consensus 230 IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaS 309 (1407)
||++.+...+.++..|...|++++|+|||++|++|+.++ ++||++.++..+.....+ .+..+.+.+.. ..++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~ 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRT---NYVAFV 76 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTS---SEEEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCC---CEEEEE
Confidence 677778888888899999999999999999999998665 789999987766554433 46777887754 234467
Q ss_pred EecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee
Q psy6522 310 TSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE 389 (1407)
Q Consensus 310 gs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~ 389 (1407)
++.|++|++||+.++..+.... +...|.+++|+++. ++++ .++.|++||+..... .+..+..
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~-------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~--~~~~~~~ 138 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK-------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK--RITDDIR 138 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE-------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC--BSSCCEE
T ss_pred ECCccEEEEEECCCCcEEEEEE-------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce--eeEEecc
Confidence 8888999999998874433221 23579999999764 3333 478999999964411 2222222
Q ss_pred cCCCcceEEEcCCCCEEEE--EeCCCeEEEEEccCCceEEeeeccCcCCCCCcc-ccccccccccEEEEEECCCCCEEEE
Q psy6522 390 HSDKVDSIQWSHSHLRFVS--GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKE-TSDETNKKIKVTMVAWDASDRWVIT 466 (1407)
Q Consensus 390 h~~~V~sIafSpdg~~LaS--gs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~VtslafSpdg~~Las 466 (1407)
....+++++ .++++ |+.||.|++||+.++....... .......... ......|...|++++|+|++.+|++
T Consensus 139 ---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~-~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQD-QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccc-ccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 334556676 56665 5899999999998754111000 0000000001 2334568899999999999999999
Q ss_pred EEecCCe-EEEEECCCCceEEEEe-c-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeee--------
Q psy6522 467 AINFNFQ-IKIWDAFNGDLVQVLK-G-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN-------- 535 (1407)
Q Consensus 467 gs~~DG~-I~IWDl~tg~~l~~l~-g-H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~-------- 535 (1407)
++. |++ |+|||+.+++++..+. + |...|++++|+| ++.+|++++.||+|+|||+..+.......+..
T Consensus 213 ~s~-d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 290 (355)
T 3vu4_A 213 CSQ-DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQ 290 (355)
T ss_dssp EET-TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred EeC-CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccc
Confidence 998 998 9999999999999998 6 999999999999 99999999999999999998763222222110
Q ss_pred --------eecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 536 --------IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 536 --------~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
.+..........++|++||++|++++.||.+.+|++..+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 01111122346799999999999999999999999876544
No 114
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.5e-26 Score=276.00 Aligned_cols=292 Identities=15% Similarity=0.108 Sum_probs=237.5
Q ss_pred CceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEE-----EEeCCCCCeEEEEEcCCCCEEEEEEC
Q psy6522 192 SNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEISDIAIDNRNILLAAGTV 266 (1407)
Q Consensus 192 ~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~-----tl~gH~~~ItsLafSpDg~lLaSgs~ 266 (1407)
..++....+..|. .+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|...|.+++|++++.++++++.
T Consensus 111 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 189 (433)
T 3bws_A 111 ITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ 189 (433)
T ss_dssp CSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred CcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence 3456666666664 45699999988888888889999999999999887 44588999999999999999999999
Q ss_pred CCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEE-EEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 267 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 267 DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~L-aSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
|+.|++||+.+++.+..+..|...+.+++|+|++ ..| ++++.|+.|++||+.++...... ..
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~~-------------~~ 252 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR----DLVYCSNWISEDISVIDRKTKLEIRKT-------------DK 252 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEEC-------------CC
T ss_pred CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC----CEEEEEecCCCcEEEEECCCCcEEEEe-------------cC
Confidence 9999999999999999999999999999999975 555 55568999999999876332211 11
Q ss_pred CcceEEEEECCCCceEEEee--------CCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCE-EEEEeCCCeEE
Q psy6522 346 NAHILCSSFSPGGLFLATGS--------GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR-FVSGSRDGTAL 416 (1407)
Q Consensus 346 ~~~I~~vafSpdg~~Lasgs--------~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~-LaSgs~DGtI~ 416 (1407)
...+.+++|+|++.+|++++ .|+.|++||+... . ......|...+.+++|+|++.. +++++.++.|+
T Consensus 253 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~---~-~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 253 IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE---K-LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT---E-EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC---c-EEeeccCCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 24589999999999999887 5889999999432 2 2233355668899999999975 46668999999
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec--------------CCeEEEEECCCC
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF--------------NFQIKIWDAFNG 482 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~--------------DG~I~IWDl~tg 482 (1407)
+||+.+++..... .+...+.+++|+|++++|++++.. ||.|++||+.++
T Consensus 329 v~d~~~~~~~~~~-----------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~ 391 (433)
T 3bws_A 329 VYDLKEKKVQKSI-----------------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD 391 (433)
T ss_dssp EEETTTTEEEEEE-----------------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred EEECCCCcEEEEe-----------------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence 9999987654322 134568899999999999988763 369999999999
Q ss_pred ceEEEEecCCCCeEEEEEecCCCCEEEEEeC-CCcEEEEECCC
Q psy6522 483 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILS 524 (1407)
Q Consensus 483 ~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~-DG~V~IWDi~s 524 (1407)
+.+..+..+ ..+.+++|+| ++++|++++. |+.|++|++..
T Consensus 392 ~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 392 TVKEFWEAG-NQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEEEECS-SSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred cEEEEecCC-CCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 999988864 5789999999 9999888875 99999999853
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=2.1e-26 Score=272.25 Aligned_cols=286 Identities=11% Similarity=0.135 Sum_probs=214.8
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEe
Q psy6522 196 QHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWN 274 (1407)
Q Consensus 196 ~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lL-aSgs~DGtIrVWD 274 (1407)
.+..+.+|...|+|++|+|||++|++|+.++ ++|||+.+++.+.....+ .+..+++.++++++ ++++.|++|+|||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3445688999999999999999999998775 789999988776655433 58888999988877 5677789999999
Q ss_pred CCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccc-cccceeeeccccccccccCCCCcceEEEE
Q psy6522 275 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 275 l~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~-~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
+.+++++..+. |...|.++.|+++ .++++ .|+.|++||+.+. ........ ....++
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~------~~~~~-~~~~i~i~d~~~~~~~~~~~~~---------------~~~~~~ 144 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE------FIVVS-YGDVISVFKFGNPWKRITDDIR---------------FGGVCE 144 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS------EEEEE-ETTEEEEEESSTTCCBSSCCEE---------------EEEEEE
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC------EEEEE-EcCEEEEEECCCCceeeEEecc---------------CCceEE
Confidence 99999999886 6678999999884 34444 4789999999876 32222111 233455
Q ss_pred ECCCCceEEE--eeCCceEEEEeccCCCCC------------c-eeEEEeecCCCcceEEEcCCCCEEEEEeCCCe-EEE
Q psy6522 354 FSPGGLFLAT--GSGDHHVRVYKMDGVDSP------------L-GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGT-ALI 417 (1407)
Q Consensus 354 fSpdg~~Las--gs~DG~I~IwDl~~~~~~------------~-~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGt-I~I 417 (1407)
+++ .++++ |+.+|.|++||+...... . .+..+.+|.+.|.+++|+|++.+|++|+.||+ |+|
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 666 55555 688999999999543200 1 15678899999999999999999999999998 999
Q ss_pred EEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEEe------
Q psy6522 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLK------ 489 (1407)
Q Consensus 418 WDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~--l~~l~------ 489 (1407)
||+.+++...... ...|...|.+++|+|++++|++++. |+.|+|||+..+.. ...+.
T Consensus 223 wd~~~~~~~~~~~--------------~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~ 287 (355)
T 3vu4_A 223 FKTEDGVLVREFR--------------RGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMK 287 (355)
T ss_dssp EETTTCCEEEEEE--------------CTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECC
T ss_pred EECCCCcEEEEEE--------------cCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeecc
Confidence 9999887554321 0126788999999999999999998 99999999976531 11111
Q ss_pred ---------------cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 490 ---------------GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 490 ---------------gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.+......++|++ ++++|++++.||.+.+|++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 288 YFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEEEcC
Confidence 1122346789999 9999999999999999998765
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-26 Score=278.39 Aligned_cols=289 Identities=11% Similarity=0.003 Sum_probs=224.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc---eEEEEecc------------------------------------
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA---PISVLVGH------------------------------------ 287 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~---~v~~l~~H------------------------------------ 287 (1407)
.+|.+++|+++|++|++++ ++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999777665 7899999999998 66555533
Q ss_pred ------------------CCceEEEEeccCCCCCceEE-EEEecCCceeEEeec--cccccceeeeccccccccccCCCC
Q psy6522 288 ------------------QGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYK--LDIDISKTVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 288 ------------------~~~VtsLafspd~~~~~~~L-aSgs~DGtI~vWDl~--t~~~~~~~~~~~~~~~~~~~~~h~ 346 (1407)
.+.|++++|+|++ .+| ++++.||.|++||+. ++........ ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~~ 149 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE----SRLIACADSDKSLLVFDVDKTSKNVLKLRKR----------FCFS 149 (450)
T ss_dssp ----------------CCCCCEEEEEECTTS----SEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------EECS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCC----CEEEEEECCCCeEEEEECcCCCCceeeeeec----------ccCC
Confidence 3369999999976 675 899999999999998 5533322211 1234
Q ss_pred cceEEEEECCCCceEEEeeCCceEEEEeccCCCCCc-eeEEEeecCCCcceEEEcCC---CCEEEEEeCCCeEEEEEccC
Q psy6522 347 AHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPL-GILEVEEHSDKVDSIQWSHS---HLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~-~i~~l~~h~~~V~sIafSpd---g~~LaSgs~DGtI~IWDl~t 422 (1407)
..|.+++|+|++.+|++|+.+|.|++|++....... .+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+.+
T Consensus 150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 779999999999999999999999999995444332 34466789999999999999 99999999999999999987
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecC-----------
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH----------- 491 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH----------- 491 (1407)
+...... ...|...|.+++|+ ++.+|++++. |+.|+|||+.+++++..+..+
T Consensus 230 ~~~~~~~---------------~~~h~~~v~~~~~s-d~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 230 CFIVDKW---------------LFGHKHFVSSICCG-KDYLLLSAGG-DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp TTCEEEE---------------CCCCSSCEEEEEEC-STTEEEEEES-SSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred Cceeeee---------------ecCCCCceEEEEEC-CCCEEEEEeC-CCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 7644321 23477899999999 9999999998 999999999999999888743
Q ss_pred --------------CCCeEEEEEecCCCCEEEEEe-CCCcEEEEEC--CCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 492 --------------TNEVFVLESHPFDSRVLLSAG-HDGLIIIWDI--LSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 492 --------------~~~V~sLafsP~dg~~LaSgs-~DG~V~IWDi--~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
...|.+++|+| ++.+|++++ .|+.|+||++ .++ ..+..+.. +.+ ++.|.+++|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~--~~l~~~~~-~~~--~~~v~~~~~~~~~ 366 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQK--GDLALKQI-ITF--PYNVISLSAHNDE 366 (450)
T ss_dssp BC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSST--TCEEEEEE-EEC--SSCEEEEEEETTE
T ss_pred cccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCC--CceeeccE-ecc--CCceEEEEecCCc
Confidence 35789999999 999999998 8999999999 433 22222221 222 2789999999965
Q ss_pred CEEEEEeC------CCeEEEEEcCC
Q psy6522 555 TTCALTDS------YGHLLVYGLGG 573 (1407)
Q Consensus 555 ~~LAsgs~------DG~I~Iwdl~s 573 (1407)
.++++++. +..|.+|.+..
T Consensus 367 ~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 367 FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEEecccCCCCCCcceEEEEEEc
Confidence 44444332 44577887643
No 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=5.3e-27 Score=280.59 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=220.9
Q ss_pred eccCCceEEEecCCCCc--eeEEEEEcCCCCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------cEEEEEeCCC
Q psy6522 177 SGPLSRFLMISSHKYSN--LRQHYVNLGHLSAVFCVLFDK-LGEVIVTGADDLLIKLWRARDG-------KLLATLRGCS 246 (1407)
Q Consensus 177 tg~~~~~~~i~~~~~~~--~~~~~~L~GH~~~V~~vafSp-dG~~LaTGS~DG~V~IWDl~tg-------~~l~tl~gH~ 246 (1407)
+++.++.+.+|...... ......+.+|.+.|++++|+| ++++|++|+.||.|+|||+.++ +.+..+.+|.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 35566777777642211 134456789999999999999 8999999999999999999988 6788999999
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCceEEEE--eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc
Q psy6522 247 GEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVL--VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 323 (1407)
Q Consensus 247 ~~ItsLafSpDg-~lLaSgs~DGtIrVWDl~tg~~v~~l--~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t 323 (1407)
..|++++|+|++ .+|++|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|++ .+|++++.||.|++||+.+
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG----ALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS----SCEEEEETTSEEEEEETTT
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC----CEEEEEecCCcEEEEeCCC
Confidence 999999999998 69999999999999999999999999 7899999999999976 8999999999999999987
Q ss_pred ccccceeeeccccccccccCCCCc-ceEEEEECCCCceEEEe---eCCceEEEEeccCCCCCceeEEEeecCCCcceEEE
Q psy6522 324 DIDISKTVFHEPVMFNERIRPGNA-HILCSSFSPGGLFLATG---SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW 399 (1407)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~h~~-~I~~vafSpdg~~Lasg---s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIaf 399 (1407)
+....... ..|.. .+.+++|+|++.+|++| +.|+.|++||+.......... ...|...|.+++|
T Consensus 208 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 208 GTVVAEKD-----------RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFF 275 (402)
T ss_dssp TEEEEEEE-----------CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEE
T ss_pred Cceeeeec-----------cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeEEEE
Confidence 64332221 12333 37899999999999999 789999999996544333332 2356778999999
Q ss_pred cCCCCEEEE-EeCCCeEEEEEccCCce-EEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE
Q psy6522 400 SHSHLRFVS-GSRDGTALIWYYKCSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW 477 (1407)
Q Consensus 400 Spdg~~LaS-gs~DGtI~IWDl~t~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IW 477 (1407)
+|++.+|++ |+.||.|++||+.+++. .... ....+...|.+++|+|++.++++ . ++.+++|
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l--------------~~~~~~~~v~~~~~sp~~~~~~s--~-~~~~~~~ 338 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL--------------SMFSSKESQRGMGYMPKRGLEVN--K-CEIARFY 338 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEE--------------EEECCSSCCSEEEECCGGGSCGG--G-TEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEee--------------cccccCCcccceEEeccccccee--c-ceeEEEE
Confidence 999998865 55799999999988762 1111 01124578899999999998865 3 7799999
Q ss_pred ECCCCce
Q psy6522 478 DAFNGDL 484 (1407)
Q Consensus 478 Dl~tg~~ 484 (1407)
++.++.+
T Consensus 339 ~l~~~~~ 345 (402)
T 2aq5_A 339 KLHERKC 345 (402)
T ss_dssp EEETTEE
T ss_pred EcCCCcE
Confidence 9987654
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.5e-25 Score=260.66 Aligned_cols=329 Identities=10% Similarity=0.020 Sum_probs=246.7
Q ss_pred eeccCCceEEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEE-EEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEE
Q psy6522 176 YSGPLSRFLMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVI-VTGADDLLIKLWRARDGKLLATLRGCSGEISDIAI 254 (1407)
Q Consensus 176 ~tg~~~~~~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~L-aTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLaf 254 (1407)
++++.++.+.+|... ..++...+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+. .|.+++|
T Consensus 6 vs~~~d~~v~v~d~~--~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 6 IANSESDNISVIDVT--SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEETTTTEEEEEETT--TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEcCCCCEEEEEECC--CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 455667777777653 446666777775 58999999999987 566689999999999999999988665 9999999
Q ss_pred cCCCCEEEEEE-CCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEE-EEEecCCceeEEeeccccccceeee
Q psy6522 255 DNRNILLAAGT-VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYL-ASTSTDGCIGFWKYKLDIDISKTVF 332 (1407)
Q Consensus 255 SpDg~lLaSgs-~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~L-aSgs~DGtI~vWDl~t~~~~~~~~~ 332 (1407)
+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+|++ ..| ++++.++.|++||+.++.......
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~~~~~~~~~~~- 155 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDG----KKLYVTNNGDKTVSVINTVTKAVINTVS- 155 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCC----CEEEEEeCCCCEEEEEECCCCcEEEEEe-
Confidence 99999886555 56999999999999888887554 68999999976 555 788889999999998764332221
Q ss_pred ccccccccccCCCCcceEEEEECCCCceE-EEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-
Q psy6522 333 HEPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS- 410 (1407)
Q Consensus 333 ~~~~~~~~~~~~h~~~I~~vafSpdg~~L-asgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs- 410 (1407)
. ...+.+++|+|++.+| ++++.++.|++||+... ..+.. ..+...+.+++|+|++.+|++++
T Consensus 156 -----------~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 156 -----------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDT-VKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp -----------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEE-EECSSEEEEEEECTTSSEEEEEEE
T ss_pred -----------c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEE-EecCCCccceEECCCCCEEEEEec
Confidence 1 2456899999999877 56778899999999432 23333 34567889999999999998888
Q ss_pred --CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE
Q psy6522 411 --RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 411 --~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l 488 (1407)
.++.|++||+.+++...... ....+.+++|+|++++|++++..|+.|++||+.+++++..+
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIP-----------------VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEE-----------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcCCCcEEEEECCCCeEEEEEe-----------------cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 68999999999876543221 12246889999999999766555999999999999999998
Q ss_pred ecCCCCeE---EEE------------EecC-C------C--CEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCc
Q psy6522 489 KGHTNEVF---VLE------------SHPF-D------S--RVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 544 (1407)
Q Consensus 489 ~gH~~~V~---sLa------------fsP~-d------g--~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~ 544 (1407)
..|..+.. .+. |+.. . . -.|...+.|..+++|++.++. .. ....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~--~~---------~~~~- 350 (391)
T 1l0q_A 283 AVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS--SS---------KKQN- 350 (391)
T ss_dssp ECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC--EE---------CSSS-
T ss_pred ECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc--cc---------CcCC-
Confidence 87755421 111 2220 0 1 245666778899999998772 11 0111
Q ss_pred eeEEEECCCCCEEEEE
Q psy6522 545 LFDGKWSPDGTTCALT 560 (1407)
Q Consensus 545 I~slafSpDG~~LAsg 560 (1407)
....|+++|.+.+..
T Consensus 351 -~~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 351 -PTHTYSETGIYTVRL 365 (391)
T ss_dssp -CEECCSSCEEEEEEE
T ss_pred -CeEEeCCCceEEEEE
Confidence 235789999887654
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=310.64 Aligned_cols=260 Identities=22% Similarity=0.295 Sum_probs=213.6
Q ss_pred EEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--CCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 239 LATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 239 l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~--tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+. ++..+..+.+|.+.|++++|+++. ++.+|++|+.||.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKV 79 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeE
Confidence 45678999999999999999999999999999999997 567788899999999999999862 24899999999999
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCc
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKV 394 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V 394 (1407)
++||+.++... .......|...|.+++|+|+ +.+|++|+.||.|++||+.... ......+.+|...|
T Consensus 80 ~vwd~~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~-~~~~~~~~~~~~~v 148 (753)
T 3jro_A 80 LIWKEENGRWS----------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-TTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEEEETTEEE----------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS-CCCCEEEECCSSCE
T ss_pred EEEECCCCccc----------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC-CcceeEeecCCCce
Confidence 99999876311 11223456789999999999 9999999999999999995432 33445678899999
Q ss_pred ceEEEcC-------------CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC-
Q psy6522 395 DSIQWSH-------------SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS- 460 (1407)
Q Consensus 395 ~sIafSp-------------dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd- 460 (1407)
.+++|+| ++.+|++|+.||.|++||+.++...... ......|...|++++|+|+
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~------------~~~~~~h~~~V~~l~~sp~~ 216 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTLEGHSDWVRDVAWSPTV 216 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE------------EEEECCCSSCEEEEEECCCC
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee------------eeeecCCCCcEEEEEeccCC
Confidence 9999999 5889999999999999999876422111 1122457789999999999
Q ss_pred --CCEEEEEEecCCeEEEEECCCCc-----eEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 461 --DRWVITAINFNFQIKIWDAFNGD-----LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 461 --g~~Lasgs~~DG~I~IWDl~tg~-----~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+.+|++++. ||.|++||+.++. .+....+|...|++++|+| ++.+|++|+.||.|+||++..+
T Consensus 217 ~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 217 LLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCC
Confidence 899999998 9999999998864 3334456889999999999 9999999999999999999865
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=5.7e-26 Score=275.23 Aligned_cols=267 Identities=18% Similarity=0.277 Sum_probs=212.7
Q ss_pred EEEcCCCCCEEEEEEcCC-CCEEEEEECCCeEEEEEcCC----------CcEEEEEeCCCCCeEEEEEcCCCC-EEEEEE
Q psy6522 198 YVNLGHLSAVFCVLFDKL-GEVIVTGADDLLIKLWRARD----------GKLLATLRGCSGEISDIAIDNRNI-LLAAGT 265 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpd-G~~LaTGS~DG~V~IWDl~t----------g~~l~tl~gH~~~ItsLafSpDg~-lLaSgs 265 (1407)
..+.+|.+.|++++|+|+ +.+||+|+.||.|+|||+.+ ...+..+.+|...|++|+|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456789999999999997 78999999999999999987 678889999999999999999998 999999
Q ss_pred CCCeEEEEeCCCCce-------EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccc
Q psy6522 266 VDKTIRIWNLQTLAP-------ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 338 (1407)
Q Consensus 266 ~DGtIrVWDl~tg~~-------v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~ 338 (1407)
.||.|+||++.++.. ...+.+|...|.+++|+|.. ..+|++++.||.|++||+....... .
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~---~~~l~s~~~dg~i~i~d~~~~~~~~---------~ 269 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH---ESLFGSVADDQKLMIWDTRNNNTSK---------P 269 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEETTCSCSSS---------C
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC---CCEEEEEeCCCeEEEEECCCCCCCc---------c
Confidence 999999999987322 45677899999999999942 3899999999999999998762111 1
Q ss_pred ccccCCCCcceEEEEECCCCc-eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEE
Q psy6522 339 NERIRPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTAL 416 (1407)
Q Consensus 339 ~~~~~~h~~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~ 416 (1407)
...+..|...|.+++|+|++. +|++|+.||.|++||+.... ..+..+..|...|.+++|+|++. +|++++.||.|+
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence 112235678899999999987 68899999999999995432 34566788999999999999985 799999999999
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCC
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFN 481 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG~I~IWDl~t 481 (1407)
|||+............. ............|...|.+++|+|++. +|++++. ||.|+||++..
T Consensus 348 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw~~~~ 410 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAE--DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-DNIMQVWQMAE 410 (430)
T ss_dssp EEEGGGTTCCCCHHHHH--HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-TSEEEEEEECH
T ss_pred EEeCCCCccccCccccc--cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-CCCEEEeEccc
Confidence 99998632110000000 000012223345778899999999999 6666766 99999999864
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.3e-25 Score=276.56 Aligned_cols=357 Identities=11% Similarity=0.044 Sum_probs=266.8
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC--CCCceEEEEeccC
Q psy6522 211 LFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL--QTLAPISVLVGHQ 288 (1407)
Q Consensus 211 afSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl--~tg~~v~~l~~H~ 288 (1407)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+++.+..+.. .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 4889999999999999999999999999999984433 899999999999999999999999999 88988888874 4
Q ss_pred CceEEEEecc----CCCCCceEEEEEe-cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCc-eEE
Q psy6522 289 GIITGVNFCP----LEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL-FLA 362 (1407)
Q Consensus 289 ~~VtsLafsp----d~~~~~~~LaSgs-~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~-~La 362 (1407)
..+.+++|+| ++ ++|++++ .+++|.+||..+.+.+..............+ .....+.++.++|++. +++
T Consensus 222 ~~p~~va~sp~~~~dg----~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~-~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 222 IEARSVESSKFKGYED----RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY-HPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp SEEEEEEECCSTTCTT----TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE-ESCCCEEEEEECSSSSEEEE
T ss_pred CCcceEEeCCCcCCCC----CEEEEEEccCCeEEEEeccccccceeecccCcccCcccc-ccCCceEEEEECCCCCEEEE
Confidence 5679999999 77 7888877 5899999998877554433221000000000 0123688999999765 556
Q ss_pred EeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCcc
Q psy6522 363 TGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKE 441 (1407)
Q Consensus 363 sgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~ 441 (1407)
+...++.|.+||+.... ...+..+ .+...+.+++|+|+|++|++++ .+++|.+||+.++++..... ..
T Consensus 297 s~~~~g~i~vvd~~~~~-~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~-~g-------- 365 (543)
T 1nir_A 297 NVKETGKVLLVNYKDID-NLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD-VG-------- 365 (543)
T ss_dssp EETTTTEEEEEECTTSS-SCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-CS--------
T ss_pred EECCCCeEEEEEecCCC-cceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec-cC--------
Confidence 66778999999995432 2222333 3567789999999999776654 68999999999988655321 10
Q ss_pred ccccccccccEEEEEECCCCCEEEEEE-ecCCeEEEEECCC-------CceEEEEecCCCCeEEEEEecCCCCEEEEEe-
Q psy6522 442 TSDETNKKIKVTMVAWDASDRWVITAI-NFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG- 512 (1407)
Q Consensus 442 ~~~~~~~~~~VtslafSpdg~~Lasgs-~~DG~I~IWDl~t-------g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs- 512 (1407)
...|......+ ++|++..+++++ ..|++|.|||+.+ +++++++.+|.+.+..|++|| ++++|++++
T Consensus 366 ---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~ 440 (543)
T 1nir_A 366 ---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTT 440 (543)
T ss_dssp ---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCT
T ss_pred ---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecC
Confidence 01122222223 467744444443 2379999999998 899999999999999999999 999999987
Q ss_pred ------CCCcEEEEECCCCCccce-eeeeeee----cCCCCCceeEEEECCCCCEEEEEe-----CCCeEEEEEcCCCcc
Q psy6522 513 ------HDGLIIIWDILSSKQRGY-KWFHNIV----EGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGFKR 576 (1407)
Q Consensus 513 ------~DG~V~IWDi~sgk~~~l-~~~~~~~----~g~~~~~I~slafSpDG~~LAsgs-----~DG~I~Iwdl~sg~~ 576 (1407)
.+++|.|||+.++ ... ..+. +- ...+...+..+.|+|||+.|+++. .++.|.|||..++++
T Consensus 441 ~~~~~~~~~~v~v~d~~~~--~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNL--DAKYQVLP-IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp TCSSHHHHTCEEEEETTCT--TSCCEEEC-HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CCCCcccCceEEEEECCCC--CCCeEEee-chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 3789999999998 444 3221 00 013356899999999999998773 379999999999999
Q ss_pred ccccCCceEecCCCcEE
Q psy6522 577 PQNIPRELFFHTDYRTL 593 (1407)
Q Consensus 577 ~~~lp~~v~Fs~D~~~L 593 (1407)
++.++..-.+.|+|+.-
T Consensus 518 ~~~i~~~~~~~p~g~~~ 534 (543)
T 1nir_A 518 KAVVKDPRLITPTGKFN 534 (543)
T ss_dssp EEEECCTTCCSEEEEEE
T ss_pred EEeecCCCccCCCeeee
Confidence 99888755566666543
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.6e-26 Score=267.89 Aligned_cols=274 Identities=14% Similarity=0.062 Sum_probs=208.4
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC---------CCceE
Q psy6522 211 LFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ---------TLAPI 281 (1407)
Q Consensus 211 afSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~---------tg~~v 281 (1407)
.+.+++++|++|+.||+|+|||+.+++.+..+. ...|.++.|+|+ |++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 445678899999999999999999999988887 567888999998 9999999999999765 45545
Q ss_pred EEEe-ccCCceEEEEecc--CCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 282 SVLV-GHQGIITGVNFCP--LEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 282 ~~l~-~H~~~VtsLafsp--d~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
..+. +|.+.|.+++|+| ++ .+|++++.||+|++||+.++...... ...+...+.+++|+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~-----------~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNT----EYFIWADNRGTIGFQSYEDDSQYIVH-----------SAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EEEECCCSSCEEEEECCC---C----CEEEEEETTCCEEEEESSSSCEEEEE-----------CCCSSCCCCEEEECTTS
T ss_pred EEeecCCCCCEEEEEcCCCCCC----CEEEEEeCCCcEEEEECCCCcEEEEE-----------ecCCCCceEEEEECCCC
Confidence 5444 6778999999999 66 89999999999999999877442111 11234569999999999
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEee-cCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEE-HSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~-h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~ 437 (1407)
.+|++|+.||.|++||+...... ...+.. |.+.|.+++|+|++.+|++++ ++.|++||++++......
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~-------- 251 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQA--SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY-------- 251 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSC--CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS--------
T ss_pred CEEEEEcCCCEEEEEECCCCCCC--ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee--------
Confidence 99999999999999999543221 144566 999999999999999999999 559999999876532110
Q ss_pred CCccccccccccccE--EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec--CCCCEEEEEeC
Q psy6522 438 HTKETSDETNKKIKV--TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP--FDSRVLLSAGH 513 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~V--tslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP--~dg~~LaSgs~ 513 (1407)
.....+...+ .+++|+|++++|++++..|+.|+||++.+....... ..+..++|++ .+...|++++.
T Consensus 252 -----~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 252 -----PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp -----CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEE
T ss_pred -----cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEec
Confidence 0000111222 579999999999998765899999998765433322 4566677765 25568899999
Q ss_pred CCcEEEEECCC
Q psy6522 514 DGLIIIWDILS 524 (1407)
Q Consensus 514 DG~V~IWDi~s 524 (1407)
||.+.++-...
T Consensus 323 d~~~~~~~~~~ 333 (343)
T 3lrv_A 323 DGGIAAILKTN 333 (343)
T ss_dssp TTEEEEEEECS
T ss_pred CCceEEEEecC
Confidence 99998876443
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=3.1e-25 Score=265.91 Aligned_cols=262 Identities=15% Similarity=0.117 Sum_probs=171.7
Q ss_pred cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC--------CC
Q psy6522 287 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP--------GG 358 (1407)
Q Consensus 287 H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp--------dg 358 (1407)
|...+....+.+.. .+|++++.|++|++||+..+...... ....+.+|...|.+++|+| ++
T Consensus 88 ~~~~~~~~~~~~~~----~~las~~~d~~v~lw~~~~~~~~~~~-------~~~~~~gH~~~v~~v~~~p~~~~~~~~d~ 156 (393)
T 4gq1_A 88 HDGDGNVNSSPVYS----LFLACVCQDNTVRLIITKNETIITQH-------VLGGKSGHHNFVNDIDIADVYSADNRLAE 156 (393)
T ss_dssp ---------CCEEE----EEEEEEETTSCEEEEEEETTEEEEEE-------EECTTTSCSSCEEEEEEEEEECTTCSEEE
T ss_pred cCCCcceeecCCCC----CEEEEEeCCCcEEEEECCCCccceee-------eecccCCCCCceEEEEEccccccccCCCC
Confidence 44444455555544 89999999999999999876332221 1234567899999999998 78
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCceEEeeeccCcCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~ 437 (1407)
++||+|+.|++|+|||+. ....+..+..|...|.+++|+|++. +|++|+.||+|++||+.+++.............
T Consensus 157 ~~las~s~D~tv~~Wd~~---~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLT---DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEETTSEEEEEEEE---TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CEEEEEECCCeEEEEECC---CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 999999999999999994 3345566778999999999999875 799999999999999998764332211100000
Q ss_pred ---------CCccccccccccccEEEEEEC-CCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE-------
Q psy6522 438 ---------HTKETSDETNKKIKVTMVAWD-ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES------- 500 (1407)
Q Consensus 438 ---------~~~~~~~~~~~~~~VtslafS-pdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLaf------- 500 (1407)
..........+...+.++.|+ +++..|++++. |+.+++||+.++.....+..|...+..+.+
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCK-SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECT-TSEEEEEEC-------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeC-CCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 000111124566778888886 89999999988 999999999988877777666655544433
Q ss_pred -----------ecC-CCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEE
Q psy6522 501 -----------HPF-DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV 568 (1407)
Q Consensus 501 -----------sP~-dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~I 568 (1407)
+|. ++.++++|+.||+|+|||+.++ ..+..+. .+...|.+++|||||++||+++.+| +.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--~~~~~~~-----~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--DSNSIPI-----QLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--TCCEEEE-----ECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--cEEEEec-----CCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 332 3346777888999999999988 5554443 3567899999999999999998766 555
Q ss_pred EEc
Q psy6522 569 YGL 571 (1407)
Q Consensus 569 wdl 571 (1407)
|.+
T Consensus 385 vrL 387 (393)
T 4gq1_A 385 TRL 387 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=2.4e-24 Score=289.97 Aligned_cols=357 Identities=13% Similarity=0.068 Sum_probs=268.4
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEECC------CeEEEEEcCCCcEEEEEeCCCCCe-------EEEEEcCCCCEEEE
Q psy6522 197 HYVNLGHLSAVFCVLFDKLGEVIVTGADD------LLIKLWRARDGKLLATLRGCSGEI-------SDIAIDNRNILLAA 263 (1407)
Q Consensus 197 ~~~L~GH~~~V~~vafSpdG~~LaTGS~D------G~V~IWDl~tg~~l~tl~gH~~~I-------tsLafSpDg~lLaS 263 (1407)
...|.+|...|.+++|||||++||+++.+ ..|.+|++.+++ ...+..|...+ .+++|+|||+++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 45678999999999999999999988643 379999998876 56788898888 99999999997787
Q ss_pred EECC------CeEEEEeCCCCceE-------------------------------------------------EEEeccC
Q psy6522 264 GTVD------KTIRIWNLQTLAPI-------------------------------------------------SVLVGHQ 288 (1407)
Q Consensus 264 gs~D------GtIrVWDl~tg~~v-------------------------------------------------~~l~~H~ 288 (1407)
++.+ ..|.+|++.++... ..+.+|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7754 35778887654422 1234566
Q ss_pred CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc
Q psy6522 289 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 368 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG 368 (1407)
..+.++.|+++ .++++++.++.+.+|.+.......... ..+ ..+.+++|+|+|++|+++ .++
T Consensus 204 ~~v~~~~~s~d-----~l~~~~~~dg~~~l~~~~~~g~~~~~l-----------~~~-~~~~~~~~SpDG~~la~~-~~~ 265 (1045)
T 1k32_A 204 THVSSPVIVGH-----RIYFITDIDGFGQIYSTDLDGKDLRKH-----------TSF-TDYYPRHLNTDGRRILFS-KGG 265 (1045)
T ss_dssp SCCEEEEEETT-----EEEEEECTTSSCEEEEEETTSCSCEEC-----------CCC-CSSCEEEEEESSSCEEEE-ETT
T ss_pred CcccceEEeCC-----EEEEEEeccCceEEEEEeCCCCcceEe-----------cCC-CCcceeeEcCCCCEEEEE-eCC
Confidence 77788888763 577778888999999876532111111 111 235667999999999887 488
Q ss_pred eEEEEeccCCCCCceeEEEee-----------cCCCcceEEEc-CCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCC
Q psy6522 369 HVRVYKMDGVDSPLGILEVEE-----------HSDKVDSIQWS-HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 436 (1407)
Q Consensus 369 ~I~IwDl~~~~~~~~i~~l~~-----------h~~~V~sIafS-pdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~ 436 (1407)
.|.+|++. . ..+..+.. |...+.+++|+ |+|++|++++ ++.|.+|++..+.....
T Consensus 266 ~i~~~d~~-~---~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-------- 332 (1045)
T 1k32_A 266 SIYIFNPD-T---EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-------- 332 (1045)
T ss_dssp EEEEECTT-T---CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--------
T ss_pred EEEEecCC-c---eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc--------
Confidence 99999982 1 12223333 44579999999 9999998887 88999999887653321
Q ss_pred CCCccccccccccc-cEEEEEECCCCCEEEEEEecCCeEE-EEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCC
Q psy6522 437 PHTKETSDETNKKI-KVTMVAWDASDRWVITAINFNFQIK-IWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD 514 (1407)
Q Consensus 437 ~~~~~~~~~~~~~~-~VtslafSpdg~~Lasgs~~DG~I~-IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~D 514 (1407)
..+.. .+..++|+ ||+.|++++. ++.|. +||+.+++... +.+|...+..++|+| ++++|++++.+
T Consensus 333 ---------~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~ 399 (1045)
T 1k32_A 333 ---------PEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDR 399 (1045)
T ss_dssp ---------SCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETT
T ss_pred ---------cCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCC
Confidence 12334 78899999 9999999887 88899 99998876554 448888999999999 99999999999
Q ss_pred CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCC----------eEEEEEcCCCccccccC---
Q psy6522 515 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG----------HLLVYGLGGFKRPQNIP--- 581 (1407)
Q Consensus 515 G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG----------~I~Iwdl~sg~~~~~lp--- 581 (1407)
+.|++||+.++ .....+. .+.+.+.+++|||||++||+++.++ .|++||+.+++. ..+.
T Consensus 400 ~~v~~~d~~tg--~~~~~~~-----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-~~l~~~~ 471 (1045)
T 1k32_A 400 FEIMTVDLETG--KPTVIER-----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTEN 471 (1045)
T ss_dssp SEEEEEETTTC--CEEEEEE-----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSS
T ss_pred CeEEEEECCCC--ceEEecc-----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-EEeeCCC
Confidence 99999999988 4333332 3566789999999999999887654 899999998873 3332
Q ss_pred ---CceEecCCCcEEEecC-CCeeeEeeC
Q psy6522 582 ---RELFFHTDYRTLNRPN-GLFEPTYDE 606 (1407)
Q Consensus 582 ---~~v~Fs~D~~~Lv~~~-~~~~~v~Dv 606 (1407)
..+.|++|++.|+... .....+|+.
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcch
Confidence 2578999999887433 233335554
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-25 Score=261.58 Aligned_cols=278 Identities=8% Similarity=0.009 Sum_probs=208.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeee
Q psy6522 253 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 332 (1407)
Q Consensus 253 afSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~ 332 (1407)
.+.+++.+|++|+.||+|+|||+.+++.+..+. ...|.++.|+| . +++++.|++|++|+..........
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~------~-~~s~s~D~~i~~w~~~~~~~~~~~-- 111 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP------A-IISRGPCNRLLLLYPGNQITILDS-- 111 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC------S-EEEECSTTEEEEEETTTEEEEEET--
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC------c-eEEecCCCeEEEEEccCceEEeec--
Confidence 345678899999999999999999999988886 45678888888 3 999999999999987653111110
Q ss_pred ccccccccccCCCCcceEEEEECC--CCceEEEeeCCceEEEEeccCCCCCceeEEE-eecCCCcceEEEcCCCCEEEEE
Q psy6522 333 HEPVMFNERIRPGNAHILCSSFSP--GGLFLATGSGDHHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSG 409 (1407)
Q Consensus 333 ~~~~~~~~~~~~h~~~I~~vafSp--dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l-~~h~~~V~sIafSpdg~~LaSg 409 (1407)
............|...|.+++|+| ++.+|++|+.||.|++||+... ..+... ..|...|.+++|+|++.+|++|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS---CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 000011112235567899999999 9999999999999999999532 223333 3456689999999999999999
Q ss_pred eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccc-cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE
Q psy6522 410 SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET-NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 410 s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l 488 (1407)
+.||.|+|||++++..... ... .|...|++++|+|++.+|++++. + .|++||+++++.+..+
T Consensus 189 ~~dg~i~iwd~~~~~~~~~---------------~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASS---------------RFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp CTTSCEEEEESSCTTSCCE---------------ECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSSTTCBSS
T ss_pred cCCCEEEEEECCCCCCCcc---------------EEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCCcceee
Confidence 9999999999998763311 112 37789999999999999999984 4 9999999998776555
Q ss_pred ec---CCCCeE--EEEEecCCCCEEEEEeC-CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC---CCCEEEE
Q psy6522 489 KG---HTNEVF--VLESHPFDSRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCAL 559 (1407)
Q Consensus 489 ~g---H~~~V~--sLafsP~dg~~LaSgs~-DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp---DG~~LAs 559 (1407)
.. |...+. +++|+| ++.+|++++. |+.|+||++... ... +. ..++..++|++ +++.|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~--~~~--~~-------~~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKK--TKN--WT-------KDEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp CCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTT--TCS--EE-------EEEEEECCC----CCCCEEEE
T ss_pred cccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEccc--ccc--eE-------ecCceeEecCccccccceeEE
Confidence 43 434443 699999 9999999998 999999999765 211 11 04567788888 8999999
Q ss_pred EeCCCeEEEEEcCC
Q psy6522 560 TDSYGHLLVYGLGG 573 (1407)
Q Consensus 560 gs~DG~I~Iwdl~s 573 (1407)
++.||.+.++-...
T Consensus 320 ~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 320 VCGDGGIAAILKTN 333 (343)
T ss_dssp EEETTEEEEEEECS
T ss_pred EecCCceEEEEecC
Confidence 99999998886443
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=7.8e-26 Score=271.07 Aligned_cols=277 Identities=13% Similarity=0.077 Sum_probs=189.2
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEE-----EEeCCCCCeEEEEEcC--------CCCEEEEEEC
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-----TLRGCSGEISDIAIDN--------RNILLAAGTV 266 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~-----tl~gH~~~ItsLafSp--------Dg~lLaSgs~ 266 (1407)
...|...+....+++++.+|++|+.|++|+|||+.++.... .+.+|.+.|++|+|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666677778888999999999999999999886543 3579999999999998 8899999999
Q ss_pred CCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec-------------
Q psy6522 267 DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH------------- 333 (1407)
Q Consensus 267 DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~------------- 333 (1407)
|++|+|||+.++.++..+..|...|.+++|+|++ ..+|++++.|++|++||+.++.........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~---~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN---PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE---EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCC---CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999999999998888888999999999999964 368999999999999999876543222111
Q ss_pred cccccccccCCCCcceEEEEEC-CCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC
Q psy6522 334 EPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD 412 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafS-pdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D 412 (1407)
.+.........|...+.++.|+ +++..|++++.|+.+++||+... .....+..|...+..+.+.++...+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 314 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGISL---- 314 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECS----
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEccccccccc----
Confidence 0111112234567788899986 79999999999999999999432 223344556666666666665322111
Q ss_pred CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCC
Q psy6522 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 413 GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
....+..+.+.+.+..+++++..||.|+|||+.+++++..+.+|.
T Consensus 315 -----------------------------------~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 315 -----------------------------------FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp -----------------------------------SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred -----------------------------------cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 011112233334455555544449999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q psy6522 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWDIL 523 (1407)
Q Consensus 493 ~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~ 523 (1407)
..|.+|+|+| ++++||+++.+| |.+|.+.
T Consensus 360 ~~V~svafsp-dG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 360 MPIVDFCWHQ-DGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCEEEEEECT-TSSEEEEEESSE-EEEEEEG
T ss_pred CcEEEEEEcC-CCCEEEEEeCCC-eEEEEEe
Confidence 9999999999 999999998765 6666653
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.5e-23 Score=243.79 Aligned_cols=301 Identities=15% Similarity=0.120 Sum_probs=213.5
Q ss_pred CceeEEEEEcCCCCC----EEEEEEcCCCC---EEEEEECCCeEEEEEcCCC---cEEEEEeCCCCCeEEEEEcCCCCEE
Q psy6522 192 SNLRQHYVNLGHLSA----VFCVLFDKLGE---VIVTGADDLLIKLWRARDG---KLLATLRGCSGEISDIAIDNRNILL 261 (1407)
Q Consensus 192 ~~~~~~~~L~GH~~~----V~~vafSpdG~---~LaTGS~DG~V~IWDl~tg---~~l~tl~gH~~~ItsLafSpDg~lL 261 (1407)
.+++++..|+.-.+. |.++-|-..|- .|++++. ..|++|+..++ ++++++.+|..+|..+.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 355666666554332 34454544443 6777774 58999999999 8999999999999999999985433
Q ss_pred EEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccc
Q psy6522 262 AAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 341 (1407)
Q Consensus 262 aSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~ 341 (1407)
++.. .=.-+...|.+|+|+|+...-+.++++++.+ +++|++.
T Consensus 102 ~~~~-----------------~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~------------------- 143 (356)
T 2w18_A 102 VCVA-----------------LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT------------------- 143 (356)
T ss_dssp EEEE-----------------ECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET-------------------
T ss_pred eeee-----------------eccccccceEEEEECCCccccccEEEeCCCe--EEEEecC-------------------
Confidence 3321 1112455789999999832224888888754 6677542
Q ss_pred cCCCCcceEEEEECCCCceEEEee--CCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC---CCCEEEEEeCCCeEE
Q psy6522 342 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTAL 416 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~~Lasgs--~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp---dg~~LaSgs~DGtI~ 416 (1407)
+++++.+++ .|+.|++|++... ...+..+..|...+..++|++ ++.+|++|+.|++|+
T Consensus 144 ---------------~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIk 206 (356)
T 2w18_A 144 ---------------KRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIV 206 (356)
T ss_dssp ---------------TTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEE
T ss_pred ---------------CCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEE
Confidence 344455533 5888999998432 334556778999999999999 779999999999999
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEE------------EEEecCCeEEEEECCCCce
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVI------------TAINFNFQIKIWDAFNGDL 484 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~La------------sgs~~DG~I~IWDl~tg~~ 484 (1407)
|||+.++++...... ...+...+.+++|+|+|.+++ +++. |++|++||..++++
T Consensus 207 IWDl~TGk~l~tL~g-------------~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~-D~tIklWd~~tgk~ 272 (356)
T 2w18_A 207 IWNLKTGQLLKKMHI-------------DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP-VFQLIVINPKTTLS 272 (356)
T ss_dssp EEETTTCCEEEEEEC-------------CC---CCCEEEEEEETTEEEEEEC------------C-CEEEEEEETTTTEE
T ss_pred EEECCCCcEEEEEcC-------------CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC-CcEEEEEECCCCEE
Confidence 999999987664321 011234677889999998874 3444 99999999999998
Q ss_pred EEEE-----ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEE
Q psy6522 485 VQVL-----KGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCAL 559 (1407)
Q Consensus 485 l~~l-----~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAs 559 (1407)
+..+ .+|...+.+..+ ++.++++|+.||+|+|||+.++ +.+..+. ++....+..++|||||++||+
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tG--k~l~tL~----gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLG--QCTALLP----PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTC--SEEEEEC----CC--CCCCEEEECSSSSEEEE
T ss_pred EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCC--cEEEEec----CCCCCeEEEEEECCCCCEEEE
Confidence 8776 377766554444 4689999999999999999999 7777765 333334556899999999999
Q ss_pred EeCCCeEEEEEc
Q psy6522 560 TDSYGHLLVYGL 571 (1407)
Q Consensus 560 gs~DG~I~Iwdl 571 (1407)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999986
No 128
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.2e-23 Score=280.63 Aligned_cols=397 Identities=13% Similarity=0.072 Sum_probs=285.7
Q ss_pred EEEEcCCCCCE-------EEEEEcCCCCEEEEEECC------CeEEEEEcCCCcEE------------------------
Q psy6522 197 HYVNLGHLSAV-------FCVLFDKLGEVIVTGADD------LLIKLWRARDGKLL------------------------ 239 (1407)
Q Consensus 197 ~~~L~GH~~~V-------~~vafSpdG~~LaTGS~D------G~V~IWDl~tg~~l------------------------ 239 (1407)
.+.|.+|...+ .+++|+|||+++++++.+ ..|.+|++.++...
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 56788999888 999999999977777754 35778887655422
Q ss_pred -------------------------EEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CceEEEEeccCCceEE
Q psy6522 240 -------------------------ATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQGIITG 293 (1407)
Q Consensus 240 -------------------------~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t-g~~v~~l~~H~~~Vts 293 (1407)
..+.+|...+.+++|+++ .++++++.|+.+.||.+.. +.....+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 233567888899999988 6777788889999998753 44556666665 4677
Q ss_pred EEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC-CCCceEEEeeCCceEEE
Q psy6522 294 VNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRV 372 (1407)
Q Consensus 294 Lafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS-pdg~~Lasgs~DG~I~I 372 (1407)
++|+|++ ..|+++ .++.|.+|++... .+...... ..........+...+.+++|+ |+|++|++++ ++.|.+
T Consensus 250 ~~~SpDG----~~la~~-~~~~i~~~d~~~~-~l~~l~~~-~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 250 RHLNTDG----RRILFS-KGGSIYIFNPDTE-KIEKIEIG-DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp EEEEESS----SCEEEE-ETTEEEEECTTTC-CEEECCCC-CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred eeEcCCC----CEEEEE-eCCEEEEecCCce-EeeeeccC-cccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 8999976 777776 5899999998332 11111110 000000111233568899999 9999999887 789999
Q ss_pred EeccCCCCCceeEEEeecCC-CcceEEEcCCCCEEEEEeCCCeEE-EEEccCCceEEeeeccCcCCCCCccccccccccc
Q psy6522 373 YKMDGVDSPLGILEVEEHSD-KVDSIQWSHSHLRFVSGSRDGTAL-IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKI 450 (1407)
Q Consensus 373 wDl~~~~~~~~i~~l~~h~~-~V~sIafSpdg~~LaSgs~DGtI~-IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 450 (1407)
|++... ....+..|.. .+.+++|+ +|..|++++.++.+. +|++.++....+ ..+..
T Consensus 322 ~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l-----------------~~~~~ 379 (1045)
T 1k32_A 322 QDVSGT----YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF-----------------EENLG 379 (1045)
T ss_dssp ECTTSS----BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC-----------------CCCCC
T ss_pred EcCCCC----ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe-----------------cCCcc
Confidence 998432 1334556777 88999999 999999999888888 999887653321 13456
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCC----------cEEEE
Q psy6522 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG----------LIIIW 520 (1407)
Q Consensus 451 ~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG----------~V~IW 520 (1407)
.+..++|+|||++|++++. ++.|++||+.+++....+.+|.+.+.+++|+| |+++|++++.++ .|++|
T Consensus 380 ~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 380 NVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp SEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEE
Confidence 7899999999999999988 99999999999999888889999999999999 999998887754 89999
Q ss_pred ECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCc-------------------------
Q psy6522 521 DILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK------------------------- 575 (1407)
Q Consensus 521 Di~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~------------------------- 575 (1407)
|+.++ . +..+. .+...+.+++|+|||++|++++.++...+|+.....
T Consensus 458 d~~~g--~-~~~l~-----~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (1045)
T 1k32_A 458 DMEGR--K-IFAAT-----TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 529 (1045)
T ss_dssp ETTTT--E-EEECS-----CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred ECCCC--c-EEEee-----CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence 99887 3 33222 245568889999999999999887665555432111
Q ss_pred ------------------cccccC------CceEecCCCcEEEe--------------cCCCeeeEeeCCCCCCCCcCCC
Q psy6522 576 ------------------RPQNIP------RELFFHTDYRTLNR--------------PNGLFEPTYDEVTNLPPHLMPP 617 (1407)
Q Consensus 576 ------------------~~~~lp------~~v~Fs~D~~~Lv~--------------~~~~~~~v~Dv~T~~~~~~~p~ 617 (1407)
.+..++ ..+.|++|+..++. .....+-+||..+++...+.
T Consensus 530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-- 607 (1045)
T 1k32_A 530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-- 607 (1045)
T ss_dssp CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--
T ss_pred cCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee--
Confidence 111221 25678999986763 11223448888777543222
Q ss_pred CcccCCCCccCCCCCceEEeCCC
Q psy6522 618 PFLVDLNGTPYPPEVQRLVPGRE 640 (1407)
Q Consensus 618 pfl~d~~G~~yppd~Q~Lv~GR~ 640 (1407)
-.+..+.++||+++|+.+.+
T Consensus 608 ---~~v~~~~~S~DG~~l~~~~~ 627 (1045)
T 1k32_A 608 ---NNLTDLRLSADRKTVMVRKD 627 (1045)
T ss_dssp ---EEEEEEEECTTSCEEEEEET
T ss_pred ---cCcceEEECCCCCEEEEEcC
Confidence 22556789999999998754
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.4e-23 Score=271.04 Aligned_cols=341 Identities=9% Similarity=0.009 Sum_probs=242.4
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CC-----eEEEEEcCCCcEEEEEeCCCCC------------------------eEEEE
Q psy6522 204 LSAVFCVLFDKLGEVIVTGAD-DL-----LIKLWRARDGKLLATLRGCSGE------------------------ISDIA 253 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~-DG-----~V~IWDl~tg~~l~tl~gH~~~------------------------ItsLa 253 (1407)
...|.+++|||||++|++++. |+ .|.+||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 9999999999988777655433 88999
Q ss_pred EcCCCCEEEEEECCCeEEEEeCCCCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceee
Q psy6522 254 IDNRNILLAAGTVDKTIRIWNLQTLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331 (1407)
Q Consensus 254 fSpDg~lLaSgs~DGtIrVWDl~tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~ 331 (1407)
|||||++|++++. +.|.+||+.++. .+..+..|...+.+++|+|++ ++|++++ ++.|.+||+.++.......
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG----~~la~~~-~~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG----GFVSFIR-GRNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS----SEEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC----CEEEEEe-CCcEEEEecCCCCEEEecc
Confidence 9999999999986 999999999873 445677788899999999987 8888887 4689999998763322111
Q ss_pred eccccccccc----cCCCCcceEEEEECCCCceEEEeeCCc---------------------------------eEEEEe
Q psy6522 332 FHEPVMFNER----IRPGNAHILCSSFSPGGLFLATGSGDH---------------------------------HVRVYK 374 (1407)
Q Consensus 332 ~~~~~~~~~~----~~~h~~~I~~vafSpdg~~Lasgs~DG---------------------------------~I~IwD 374 (1407)
.......... .......+.+++|+|||++|++++.|+ .|.+||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 1100000000 000001247799999999999987765 788888
Q ss_pred ccC-CCCCceeEEEeecCCCcceEEEcCCCCEEEEEeC-----CCeEEEEEccCCceEEeeeccCcCCCCCccccccccc
Q psy6522 375 MDG-VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR-----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448 (1407)
Q Consensus 375 l~~-~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~-----DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~ 448 (1407)
+.+ .. ...+.....|...+.+++| |+|++|++++. +..|++||+.+++.......... ..
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~------------~~ 335 (741)
T 2ecf_A 270 PAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP------------TW 335 (741)
T ss_dssp SSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS------------SC
T ss_pred CCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC------------Cc
Confidence 854 22 2222111146778999999 99999887654 57899999998876543321000 00
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEEE-EEecCCCCEEE-EEeCCC--cEEEEECC
Q psy6522 449 KIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFVL-ESHPFDSRVLL-SAGHDG--LIIIWDIL 523 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~-tg~~l~~l~gH~~~V~sL-afsP~dg~~La-Sgs~DG--~V~IWDi~ 523 (1407)
...+..++|+|||++++++.. +|.++||.+. ++. +..+..|...|..+ .|+| +++.|+ +++.++ .++||++.
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSER-TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECT-TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCcCCceEECCCCeEEEEecC-CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 013346899999997777665 8877777654 455 78888888889887 5999 887665 555555 89999986
Q ss_pred CCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC----CeEEEEEcCCC
Q psy6522 524 SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGF 574 (1407)
Q Consensus 524 sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D----G~I~Iwdl~sg 574 (1407)
... .....+. ....+..++|||||++|++...+ +.+.+|++.++
T Consensus 413 ~~g-~~~~~l~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 413 LQG-GQPQRLS------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTC-CCCEECC------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred cCC-CCeeecc------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 421 3333333 24567899999999999877554 46888887544
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=3.4e-23 Score=250.48 Aligned_cols=301 Identities=14% Similarity=0.078 Sum_probs=231.5
Q ss_pred CCCEEEEEEcCCCC-EEEEEE----CCC----eEEEEEc--CCCcEE--EEEeCCCCCeEEEEEcC--------------
Q psy6522 204 LSAVFCVLFDKLGE-VIVTGA----DDL----LIKLWRA--RDGKLL--ATLRGCSGEISDIAIDN-------------- 256 (1407)
Q Consensus 204 ~~~V~~vafSpdG~-~LaTGS----~DG----~V~IWDl--~tg~~l--~tl~gH~~~ItsLafSp-------------- 256 (1407)
...|...+|++.|. ++++|+ .+| .|+|||+ .+++++ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888874 666876 467 8999999 999987 55889999888888775
Q ss_pred CCCEEEEEECC------CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCC---ceeEEeecccccc
Q psy6522 257 RNILLAAGTVD------KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDI 327 (1407)
Q Consensus 257 Dg~lLaSgs~D------GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DG---tI~vWDl~t~~~~ 327 (1407)
.+..|+.++.+ +.|++||+. +.....+.+|...|.+++|+|++ ..|++++.++ .|++||+.++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg----~~la~~s~~~~~~~i~~~d~~tg~~~ 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG----SKLAYVTFESGRSALVIQTLANGAVR 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC----CEEEEEEecCCCcEEEEEECCCCcEE
Confidence 15566666554 799999997 45567788899999999999987 8999998875 9999999876332
Q ss_pred ceeeeccccccccccCCCCcceEEEEECCCCceEE-EeeCCc--eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC
Q psy6522 328 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL 404 (1407)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~La-sgs~DG--~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~ 404 (1407)
. +..+...+.+++|+|+|+.|+ +++.++ .|++||+.+. ....+..|...+.+++|+|+|+
T Consensus 217 ~-------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~ 279 (415)
T 2hqs_A 217 Q-------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQ 279 (415)
T ss_dssp E-------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSS
T ss_pred E-------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCC
Confidence 1 112346789999999999888 555555 4899998432 2345667888999999999999
Q ss_pred EEEEEeC-CC--eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC--CeEEEEEC
Q psy6522 405 RFVSGSR-DG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN--FQIKIWDA 479 (1407)
Q Consensus 405 ~LaSgs~-DG--tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D--G~I~IWDl 479 (1407)
+|++++. ++ .|.+||+.+++.... ..+...+.+++|+|+|++|++++..+ ..|++||+
T Consensus 280 ~l~~~s~~~g~~~i~~~d~~~~~~~~l-----------------~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 280 NLAFTSDQAGRPQVYKVNINGGAPQRI-----------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTSSCCEEC-----------------CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred EEEEEECCCCCcEEEEEECCCCCEEEE-----------------ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 9988876 45 677778877653221 12345688999999999999988732 58999999
Q ss_pred CCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCC---cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 480 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDG---LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 480 ~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG---~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
.++++. .+..|. .+.+++|+| ++++|++++.++ .|++||+..+ ....+. .+.+.|.+++|+|.-
T Consensus 343 ~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~---~~~~l~-----~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 343 ATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGR---FKARLP-----ATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSC---CEEECC-----CSSSEEEEEEECCCC
T ss_pred CCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCC---cEEEee-----CCCCCCcCCcccccc
Confidence 998874 566564 899999999 999999988877 7999999754 333333 356889999999964
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=1.4e-22 Score=253.90 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=248.8
Q ss_pred EEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEee--cccccccee
Q psy6522 253 AIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY--KLDIDISKT 330 (1407)
Q Consensus 253 afSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl--~t~~~~~~~ 330 (1407)
+|+|++.++++++.|++|.+||..+++++..+..+.. +.+++|+|++ ++|++++.|++|.+||+ .+...+...
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg----~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG----RYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS----CEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC----CEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3789999999999999999999999999999984433 8899999987 89999999999999999 554322211
Q ss_pred eeccccccccccCCCCcceEEEEECC----CCceEEEeeC-CceEEEEeccCCCCCceeEEEee----------cCC-Cc
Q psy6522 331 VFHEPVMFNERIRPGNAHILCSSFSP----GGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEE----------HSD-KV 394 (1407)
Q Consensus 331 ~~~~~~~~~~~~~~h~~~I~~vafSp----dg~~Lasgs~-DG~I~IwDl~~~~~~~~i~~l~~----------h~~-~V 394 (1407)
. +...+..++|+| +|++|++++. ++.|.|||..+ ...+..+.. |.. .+
T Consensus 219 ------------~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 219 ------------K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp ------------E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCE
T ss_pred ------------e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---cccceeecccCcccCccccccCCce
Confidence 1 124578999999 9999998874 89999999843 333333332 223 68
Q ss_pred ceEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy6522 395 DSIQWSHSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473 (1407)
Q Consensus 395 ~sIafSpdg~~-LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~ 473 (1407)
.++.+++++.. +++...++.|.+||+.+........ ..+...+..++|+|+|+++++++..+++
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~---------------i~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS---------------IGAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE---------------EECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE---------------eccCcCccCceECCCCCEEEEEecCCCe
Confidence 89999998764 5666788999999998765322100 0123345678999999998888766899
Q ss_pred EEEEECCCCceEEEEec----CCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCC-----ccceeeeeeeecCCCCC
Q psy6522 474 IKIWDAFNGDLVQVLKG----HTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSK-----QRGYKWFHNIVEGQGEG 543 (1407)
Q Consensus 474 I~IWDl~tg~~l~~l~g----H~~~V~sLafsP~dg~~LaSgs-~DG~V~IWDi~sgk-----~~~l~~~~~~~~g~~~~ 543 (1407)
|.+||+.+++++..+.. |.+....+ ++|..+.+++++. .|++|.|||+.+.+ .+.+..+. .+.+
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-----~~g~ 421 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-----GQGG 421 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-----CSCS
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-----cCCC
Confidence 99999999999998874 65544444 5773366777775 58999999998821 15555554 2335
Q ss_pred ceeEEEECCCCCEEEEEe-------CCCeEEEEEcCCCccc-cccC--------------CceEecCCCcEEEec-----
Q psy6522 544 ALFDGKWSPDGTTCALTD-------SYGHLLVYGLGGFKRP-QNIP--------------RELFFHTDYRTLNRP----- 596 (1407)
Q Consensus 544 ~I~slafSpDG~~LAsgs-------~DG~I~Iwdl~sg~~~-~~lp--------------~~v~Fs~D~~~Lv~~----- 596 (1407)
.+..++|+|||++|++++ .+++|.+||+.+++.. ..++ .++.|++||+.+...
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~ 501 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 501 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC
Confidence 678899999999999987 3679999999999876 4431 278899999988743
Q ss_pred -CCCeeeEeeCCCCCCCCcCCCCcccCCCCccCCCCCceE
Q psy6522 597 -NGLFEPTYDEVTNLPPHLMPPPFLVDLNGTPYPPEVQRL 635 (1407)
Q Consensus 597 -~~~~~~v~Dv~T~~~~~~~p~pfl~d~~G~~yppd~Q~L 635 (1407)
...-+.+||..|.+....++++. ++.|.|++-
T Consensus 502 ~~~~~i~v~D~~t~~~~~~i~~~~-------~~~p~g~~~ 534 (543)
T 1nir_A 502 NDSSALVVVDDKTLKLKAVVKDPR-------LITPTGKFN 534 (543)
T ss_dssp TSCCEEEEEETTTTEEEEEECCTT-------CCSEEEEEE
T ss_pred CCCCeEEEEECCCceEEEeecCCC-------ccCCCeeee
Confidence 24667799999997766666542 445555543
No 132
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=2.6e-22 Score=233.34 Aligned_cols=266 Identities=12% Similarity=-0.006 Sum_probs=186.6
Q ss_pred EEEecCCCCceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC----CC
Q psy6522 184 LMISSHKYSNLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR----NI 259 (1407)
Q Consensus 184 ~~i~~~~~~~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpD----g~ 259 (1407)
..+.......++..+++.+|..+|..|+|.||-.-|++..- =.-+...|..|+|+|| ++
T Consensus 66 ~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~sla~spd~~~~~~ 128 (356)
T 2w18_A 66 SLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------------GNLEIREIRALFCSSDDESEKQ 128 (356)
T ss_dssp EEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------------CSSSEEEEEEECC------CCE
T ss_pred EEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------------ccccccceEEEEECCCcccccc
Confidence 33334455677999999999999999999998543332211 1124567899999999 99
Q ss_pred EEEEEECCCeEEEEeCCCCceEEE-EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccc
Q psy6522 260 LLAAGTVDKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 338 (1407)
Q Consensus 260 lLaSgs~DGtIrVWDl~tg~~v~~-l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~ 338 (1407)
++++++. .+.||++.+++.+.. ..+|...|..++|+|++ +.+.+.
T Consensus 129 ~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG----~~~~s~---------------------------- 174 (356)
T 2w18_A 129 VLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG----GGKENQ---------------------------- 174 (356)
T ss_dssp EEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTS----CEEEEE----------------------------
T ss_pred EEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCC----ceeeee----------------------------
Confidence 9999884 488898776666555 34566666666666543 222211
Q ss_pred ccccCCCCcceEEEEECC---CCceEEEeeCCceEEEEeccCCCCCceeEEEeecC---CCcceEEEcCCCCEE------
Q psy6522 339 NERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS---DKVDSIQWSHSHLRF------ 406 (1407)
Q Consensus 339 ~~~~~~h~~~I~~vafSp---dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~---~~V~sIafSpdg~~L------ 406 (1407)
..|...+..++|++ ++.+|++|+.|++|+|||+. ....+..+.+|. ..+.+++|+|+|.++
T Consensus 175 ----~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~---TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 175 ----FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK---TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp ----EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT---TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred ----ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC---CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 12335566778887 77999999999999999994 345566676554 356777999999876
Q ss_pred ------EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 407 ------VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 407 ------aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
++|+.|++|++||..+++......-. ...++...+.+..++ +.++++++. |++|+|||+.
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-----------~p~Gh~~~~lsg~~s--g~~lASgS~-DgTIkIWDl~ 313 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYC-----------LPPGQAGRFLEGDVK--DHCAAAILT-SGTIAIWDLL 313 (356)
T ss_dssp ----------CCEEEEEEETTTTEEEEEEEEC-----------CCTTCCCCEEEEEEE--TTEEEEEET-TSCEEEEETT
T ss_pred CCcceeeccCCCcEEEEEECCCCEEEEEEEee-----------ccCCCcceeEccccC--CCEEEEEcC-CCcEEEEECC
Confidence 56889999999999988765432100 011232334344443 778888887 9999999999
Q ss_pred CCceEEEEecCCCCeE-EEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 481 NGDLVQVLKGHTNEVF-VLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 481 tg~~l~~l~gH~~~V~-sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
+++++.+|.+|...+. +++|+| ++++|++|+.|++|+|||+
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999999988665 589999 9999999999999999996
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=2.9e-22 Score=257.67 Aligned_cols=327 Identities=11% Similarity=0.004 Sum_probs=225.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC---CeEEEEEcCCCCEEEEEECC---------CeEEEE
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTVD---------KTIRIW 273 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~---~ItsLafSpDg~lLaSgs~D---------GtIrVW 273 (1407)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.|.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3668899999998877 6899999999999999888887765 49999999999999999864 788999
Q ss_pred eCCCCceEEEEe---ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccc-ccccc-----CC
Q psy6522 274 NLQTLAPISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-FNERI-----RP 344 (1407)
Q Consensus 274 Dl~tg~~v~~l~---~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~-~~~~~-----~~ 344 (1407)
|+.+++. ..+. .|...+.+++|+|++ +.|++++. +.|.+||+.++............. +.... ..
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG----~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKG----QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSST----TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCce-EeccCCccccccccccEECCCC----CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 9998876 3333 344458899999987 78888876 789999998764332221111000 00000 00
Q ss_pred CCcceEEEEECCCCceEEEeeCCc----------------------------------eEEEEeccCCCCCceeEEEee-
Q psy6522 345 GNAHILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSPLGILEVEE- 389 (1407)
Q Consensus 345 h~~~I~~vafSpdg~~Lasgs~DG----------------------------------~I~IwDl~~~~~~~~i~~l~~- 389 (1407)
-...+.+++|||||+.|++++.++ .|++||+.+... ...+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~---~~~l~~~ 247 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH---DLEMMPP 247 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC---CEECCCC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce---eEEeeCC
Confidence 012347899999999999887543 789999854321 222333
Q ss_pred -----cCCCcceEEEcCCCCEEEEEeC----CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccE----EEEE
Q psy6522 390 -----HSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV----TMVA 456 (1407)
Q Consensus 390 -----h~~~V~sIafSpdg~~LaSgs~----DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~V----tsla 456 (1407)
+...+.+++|+|||++|++.+. +..|++||+.++++....... +...+ ..++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE---------------SEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE---------------CSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec---------------cCCEEeccCCCce
Confidence 2567889999999998877653 357999999988765432110 01111 2578
Q ss_pred ECCCCCEEEEE-EecCC------eEEEEE-CCCCc--eEEEEecCCCCeEE-EEEecCCCCEEEEEeCC---CcEEEEEC
Q psy6522 457 WDASDRWVITA-INFNF------QIKIWD-AFNGD--LVQVLKGHTNEVFV-LESHPFDSRVLLSAGHD---GLIIIWDI 522 (1407)
Q Consensus 457 fSpdg~~Lasg-s~~DG------~I~IWD-l~tg~--~l~~l~gH~~~V~s-LafsP~dg~~LaSgs~D---G~V~IWDi 522 (1407)
|+|||+.|++. +..++ .|.+|| ..++. +...+..+...+.. ++|+| +++.|+..+.+ +.+.||++
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEE
Confidence 99999988875 54466 577788 34444 14555544444554 69999 99988776665 78999998
Q ss_pred CCCCccceeeeeeeecCC--CCCceeEEEECCCCCEEEEEeC
Q psy6522 523 LSSKQRGYKWFHNIVEGQ--GEGALFDGKWSPDGTTCALTDS 562 (1407)
Q Consensus 523 ~sgk~~~l~~~~~~~~g~--~~~~I~slafSpDG~~LAsgs~ 562 (1407)
..........+. .. +...+..++|+|||++|++...
T Consensus 392 ~~~~~~~~~~l~----~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 392 NTVGNFNRQCLS----CDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CSSTTCCCBCSS----TTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eCCCCCCcceec----ccccCCCCeEEEEECCCCCEEEEEcc
Confidence 754211222221 11 3456889999999999887654
No 134
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9e-22 Score=252.78 Aligned_cols=333 Identities=13% Similarity=0.075 Sum_probs=227.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEE-EEEeCCC-----------------CCeEEEEEcCCCCEEEEEECCC
Q psy6522 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL-ATLRGCS-----------------GEISDIAIDNRNILLAAGTVDK 268 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l-~tl~gH~-----------------~~ItsLafSpDg~lLaSgs~DG 268 (1407)
+..+.|+ |..+++++.++ | +||+.+++.+ ..+..|. ..|.+++|||| ..|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4457777 66777788888 8 9999999873 4444343 56999999999 6666554 59
Q ss_pred eEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc-----ccccceeeecccccccc--c
Q psy6522 269 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DIDISKTVFHEPVMFNE--R 341 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t-----~~~~~~~~~~~~~~~~~--~ 341 (1407)
.|++||+.+++... +..+...+.+++|+|++ +.|+++ .++.|.+|++.+ +................ .
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG----~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVG----DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTS----SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCC----CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 99999999886544 44567778999999987 788884 689999999987 53322111111000000 0
Q ss_pred cCCCCcceEEEEECCCCceEEEee---------------------------------CCceEEEEeccCCCCCceeEEEe
Q psy6522 342 IRPGNAHILCSSFSPGGLFLATGS---------------------------------GDHHVRVYKMDGVDSPLGILEVE 388 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~~Lasgs---------------------------------~DG~I~IwDl~~~~~~~~i~~l~ 388 (1407)
...+...+.+++|+|||++|++++ .+..|.+||+.+.. ...+....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCS
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCC
Confidence 001112357899999999999987 45789999994322 11121122
Q ss_pred ecCCCcceEEEcCCCCEEEEEeCCC-----eEEEEEccCC-ceEEeeeccCcCCCCCccccccccccccEEEEEECC--C
Q psy6522 389 EHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--S 460 (1407)
Q Consensus 389 ~h~~~V~sIafSpdg~~LaSgs~DG-----tI~IWDl~t~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp--d 460 (1407)
.|...+.+++|+|+|++|++++.++ .|++||+.++ .......... ......+..++|+| |
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~------------~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD------------KHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC------------SSCCCCCSCCEECTTCS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC------------CCeECccCCceeecCCC
Confidence 4667789999999999999988775 8999999988 4332211000 00011235689999 9
Q ss_pred CCEEEEEEecCCeEEEEECC-CCceEEEEecCCCCeEE-EEEecCCCCEEEEEeC-CC----cEEEEECCCCCccceeee
Q psy6522 461 DRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEVFV-LESHPFDSRVLLSAGH-DG----LIIIWDILSSKQRGYKWF 533 (1407)
Q Consensus 461 g~~Lasgs~~DG~I~IWDl~-tg~~l~~l~gH~~~V~s-LafsP~dg~~LaSgs~-DG----~V~IWDi~sgk~~~l~~~ 533 (1407)
|++|+++.. ++.++||.+. ++..+..+..|...+.. ++|+| +++.|+.++. ++ .|..||+.+++ ...+
T Consensus 323 g~~l~~~~~-~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l 397 (706)
T 2z3z_A 323 NQFIWQSRR-DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK---TKDL 397 (706)
T ss_dssp SEEEEEECT-TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC---CEES
T ss_pred CEEEEEEcc-CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC---ceec
Confidence 998887776 8888898876 67788888888888877 79999 8877665554 44 67777877662 2222
Q ss_pred eeeecCCCCCceeEEEECCCCCEEEEEeCC----CeEEEEEcCCCc
Q psy6522 534 HNIVEGQGEGALFDGKWSPDGTTCALTDSY----GHLLVYGLGGFK 575 (1407)
Q Consensus 534 ~~~~~g~~~~~I~slafSpDG~~LAsgs~D----G~I~Iwdl~sg~ 575 (1407)
. +...+.+++|||||++|+++..+ +.|++|++.+++
T Consensus 398 ~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 398 T------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp C------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred c------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2 34568899999999999887544 569999998886
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=2.1e-21 Score=234.77 Aligned_cols=278 Identities=11% Similarity=0.001 Sum_probs=213.8
Q ss_pred eEEEecC--CCCceeEEEEEcCCCCCEEEEEEcC--------------CCCEEEEEECC------CeEEEEEcCCCcEEE
Q psy6522 183 FLMISSH--KYSNLRQHYVNLGHLSAVFCVLFDK--------------LGEVIVTGADD------LLIKLWRARDGKLLA 240 (1407)
Q Consensus 183 ~~~i~~~--~~~~~~~~~~L~GH~~~V~~vafSp--------------dG~~LaTGS~D------G~V~IWDl~tg~~l~ 240 (1407)
.+.+|+. ..........+.+|...|.++++++ .+..|+.++.+ +.|++||+. +..+.
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 5666765 3333333466889999999888875 15566666554 799999997 45567
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCC---eEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEE-EEecCCc-
Q psy6522 241 TLRGCSGEISDIAIDNRNILLAAGTVDK---TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLA-STSTDGC- 315 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lLaSgs~DG---tIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~La-Sgs~DGt- 315 (1407)
.+.+|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|++ ..|+ +++.++.
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg----~~la~~~~~~g~~ 247 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG----SKLAFALSKTGSL 247 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS----SEEEEEECTTSSC
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC----CEEEEEEecCCCc
Confidence 7888999999999999999999999885 9999999998775 567788899999999976 6666 6666665
Q ss_pred -eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC-Cc--eEEEEeccCCCCCceeEEEeecC
Q psy6522 316 -IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DH--HVRVYKMDGVDSPLGILEVEEHS 391 (1407)
Q Consensus 316 -I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-DG--~I~IwDl~~~~~~~~i~~l~~h~ 391 (1407)
|.+||+.++... .+..+...+.+++|+|+|++|++++. ++ .|.+||+.+.. ...+..+.
T Consensus 248 ~i~~~d~~~~~~~-------------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~~ 310 (415)
T 2hqs_A 248 NLYVMDLASGQIR-------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----PQRITWEG 310 (415)
T ss_dssp EEEEEETTTCCEE-------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----CEECCCSS
T ss_pred eEEEEECCCCCEE-------------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC----EEEEecCC
Confidence 888888765321 12234567899999999999988876 45 57777874322 23345567
Q ss_pred CCcceEEEcCCCCEEEEEeCC---CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy6522 392 DKVDSIQWSHSHLRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 468 (1407)
Q Consensus 392 ~~V~sIafSpdg~~LaSgs~D---GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs 468 (1407)
..+.+++|+|+|++|++++.+ +.|++||+.+++...+ ..+ ..+.+++|+|+|++|++++
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l-----------------~~~-~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-----------------SST-FLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-----------------CCS-SSCEEEEECTTSSEEEEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe-----------------cCC-CCcCCeEEcCCCCEEEEEE
Confidence 788999999999999888764 5899999998775321 112 2678899999999999988
Q ss_pred ecCC--eEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 469 NFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 469 ~~DG--~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
..++ .|++||+. +..+..+.+|.+.|.+++|+|
T Consensus 373 ~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 373 SQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred cCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 7333 89999986 666788999999999999999
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=7e-21 Score=219.60 Aligned_cols=306 Identities=9% Similarity=0.096 Sum_probs=205.5
Q ss_pred EEEEEECCCeEEEEEcC-CC--cEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEeCC--CCc--eEEEEeccCC
Q psy6522 218 VIVTGADDLLIKLWRAR-DG--KLLATLRGCSGEISDIAIDNRNILLAAGTVD-KTIRIWNLQ--TLA--PISVLVGHQG 289 (1407)
Q Consensus 218 ~LaTGS~DG~V~IWDl~-tg--~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D-GtIrVWDl~--tg~--~v~~l~~H~~ 289 (1407)
++++++.|+.|.+|++. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++. .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 33444779999999995 34 233333 477889999999999999998886 999999997 554 334454444
Q ss_pred ceEEEEeccCCCCCceEEEEEe-cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-CC
Q psy6522 290 IITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD 367 (1407)
Q Consensus 290 ~VtsLafspd~~~~~~~LaSgs-~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~D 367 (1407)
.+.+++|+|++ .+|++++ .++.|.+||+..+....... .. .....+.+++|+|++++|++++ .+
T Consensus 85 ~~~~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~~~---------~~-~~~~~~~~~~~s~dg~~l~~~~~~~ 150 (343)
T 1ri6_A 85 SLTHISTDHQG----QFVFVGSYNAGNVSVTRLEDGLPVGVVD---------VV-EGLDGCHSANISPDNRTLWVPALKQ 150 (343)
T ss_dssp CCSEEEECTTS----SEEEEEETTTTEEEEEEEETTEEEEEEE---------EE-CCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred CCcEEEEcCCC----CEEEEEecCCCeEEEEECCCCccccccc---------cc-cCCCCceEEEECCCCCEEEEecCCC
Confidence 78999999976 6666555 58899999995221101100 01 1224578899999999888877 88
Q ss_pred ceEEEEeccCCCCCceeE--EEee-cCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccC--CceEEeeeccCcCCCCCcc
Q psy6522 368 HHVRVYKMDGVDSPLGIL--EVEE-HSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC--SQWRFIRLDMNTCLPHTKE 441 (1407)
Q Consensus 368 G~I~IwDl~~~~~~~~i~--~l~~-h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t--~~~~~~~l~~~~~~~~~~~ 441 (1407)
+.|.+|++........+. .+.. ....+.+++|+|++.+|++++ .++.|.+|++.. +........ ...+
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~--~~~~---- 224 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL--DMMP---- 224 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE--ECSC----
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec--cccC----
Confidence 999999995423322222 2222 234678899999999776554 889999999953 432211100 0000
Q ss_pred ccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--C--CceEEEEecCCCCeEEEEEecCCCCEEEEEe-CCCc
Q psy6522 442 TSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--N--GDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-HDGL 516 (1407)
Q Consensus 442 ~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~--t--g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs-~DG~ 516 (1407)
........+..++|+|++++|+++...++.|.+||+. + .+.+..+..+.. +..++|+| ++++|++++ .++.
T Consensus 225 --~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 225 --ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHH 300 (343)
T ss_dssp --TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCE
T ss_pred --ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCe
Confidence 0011234677899999999998777558999999998 3 345555655554 88999999 899888777 6899
Q ss_pred EEEEECC--CCCccceeeeeeeecCCCCCceeEEEECCCCC
Q psy6522 517 IIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 555 (1407)
Q Consensus 517 V~IWDi~--sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~ 555 (1407)
|.+|++. +++...+..+. ......+++|.++.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~------~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYA------VGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEE------CSSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEccccc------cCCCCeeEEEEcccC
Confidence 9999554 55333333332 123466777776543
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=6e-21 Score=246.36 Aligned_cols=306 Identities=11% Similarity=0.098 Sum_probs=226.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----eEEEEeCCCCceEEEEeccCCc------------------------eEEEE
Q psy6522 246 SGEISDIAIDNRNILLAAGTV-DK-----TIRIWNLQTLAPISVLVGHQGI------------------------ITGVN 295 (1407)
Q Consensus 246 ~~~ItsLafSpDg~lLaSgs~-DG-----tIrVWDl~tg~~v~~l~~H~~~------------------------VtsLa 295 (1407)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 9999999999887777655433 78999
Q ss_pred eccCCCCCceEEEEEecCCceeEEeecccc--ccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEE
Q psy6522 296 FCPLEVNGFNYLASTSTDGCIGFWKYKLDI--DISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVY 373 (1407)
Q Consensus 296 fspd~~~~~~~LaSgs~DGtI~vWDl~t~~--~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~Iw 373 (1407)
|+|++ ++|++++. +.|.+||+.++. ... .+..+...+.+++|+|||++|++++. +.|++|
T Consensus 116 ~SpDg----~~l~~~~~-~~i~~~d~~~~~~~~~~------------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~ 177 (741)
T 2ecf_A 116 WSPDA----QRLLFPLG-GELYLYDLKQEGKAAVR------------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVI 177 (741)
T ss_dssp ECTTS----SEEEEEET-TEEEEEESSSCSTTSCC------------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEE
T ss_pred ECCCC----CEEEEEeC-CcEEEEECCCCCcceEE------------EcccCCcccccccCCCCCCEEEEEeC-CcEEEE
Confidence 99987 88888886 899999998761 111 12233467899999999999999874 589999
Q ss_pred eccCCCCCceeEEEeecCC----------------CcceEEEcCCCCEEEEEeCCC------------------------
Q psy6522 374 KMDGVDSPLGILEVEEHSD----------------KVDSIQWSHSHLRFVSGSRDG------------------------ 413 (1407)
Q Consensus 374 Dl~~~~~~~~i~~l~~h~~----------------~V~sIafSpdg~~LaSgs~DG------------------------ 413 (1407)
|+.+. ........+.. .+.+++|+|||++|++++.|+
T Consensus 178 d~~~g---~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 178 DLASG---RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp ETTTT---EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred ecCCC---CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 98532 11111112221 257899999999999987765
Q ss_pred ---------eEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe----cCCeEEEEEC
Q psy6522 414 ---------TALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----FNFQIKIWDA 479 (1407)
Q Consensus 414 ---------tI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~----~DG~I~IWDl 479 (1407)
.|.+||+.+ ++...... ...+...+..++| |||++|++++. .+..|++||+
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~--------------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQWIDL--------------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCEEECC--------------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCCCCeeEEEEEECCCCCceEEecC--------------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788888877 66433211 0135678899999 99999998764 2468999999
Q ss_pred CCCceEEEEecCCC----CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEE-EECCCC
Q psy6522 480 FNGDLVQVLKGHTN----EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG-KWSPDG 554 (1407)
Q Consensus 480 ~tg~~l~~l~gH~~----~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~sl-afSpDG 554 (1407)
.++++...+..|.. .+..++|+| |++++++++.||.+.||.+.... . ...+. .+...+..+ .|+|||
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~~~-~-~~~l~-----~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDSKG-K-AAALT-----HGNWSVDELLAVDEKA 391 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECSSS-C-EEESC-----CSSSCEEEEEEEETTT
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcCCC-C-eeeee-----ecceEEEeEeEEeCCC
Confidence 99998887776654 456889999 88999999999988888876321 2 33332 235567777 599999
Q ss_pred CEEEEEeC-CC--eEEEEEcCC-CccccccCC-----ceEecCCCcEEEe
Q psy6522 555 TTCALTDS-YG--HLLVYGLGG-FKRPQNIPR-----ELFFHTDYRTLNR 595 (1407)
Q Consensus 555 ~~LAsgs~-DG--~I~Iwdl~s-g~~~~~lp~-----~v~Fs~D~~~Lv~ 595 (1407)
+.|++++. ++ .+.||++.. +.....+.. .+.|++|++.++.
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVD 441 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred CEEEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEE
Confidence 98865544 44 889998864 444444432 6789999998873
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.4e-20 Score=217.59 Aligned_cols=280 Identities=12% Similarity=0.065 Sum_probs=202.5
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCCce-EEEEec
Q psy6522 210 VLFDKLGEV-IVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAP-ISVLVG 286 (1407)
Q Consensus 210 vafSpdG~~-LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~-DGtIrVWDl~tg~~-v~~l~~ 286 (1407)
..|.+++++ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666555 6677788999999999999999888777777 9999999997776665 88999999999988 777777
Q ss_pred cCCceEEEEeccCCCCCceEEEEEecCC---ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE
Q psy6522 287 HQGIITGVNFCPLEVNGFNYLASTSTDG---CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 363 (1407)
Q Consensus 287 H~~~VtsLafspd~~~~~~~LaSgs~DG---tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las 363 (1407)
+...+.+++|+|++ .+|+++..++ .|.+||+.++....... ......+++|+|+|++|++
T Consensus 82 ~~~~~~~~~~s~dg----~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------~~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 82 GQSSMADVDITPDD----QFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------------IPYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp CSSCCCCEEECTTS----SEEEECCCSSSSCEEEEEETTTTEEEEEEE-------------CCTTEEEEEECTTSSCEEE
T ss_pred CCCCccceEECCCC----CEEEEecCCCCcccEEEEECCCCCeEEEEE-------------CCCCccceEECCCCCEEEE
Confidence 77666669999976 7777555553 89999998764332211 1244689999999986655
Q ss_pred e-eCCce-EEEEeccCCCCCcee-EEEeecCCCcceEEEcCCCCEEEE-EeCCCeEEEEEccCCce---EEeeeccCcCC
Q psy6522 364 G-SGDHH-VRVYKMDGVDSPLGI-LEVEEHSDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKCSQW---RFIRLDMNTCL 436 (1407)
Q Consensus 364 g-s~DG~-I~IwDl~~~~~~~~i-~~l~~h~~~V~sIafSpdg~~LaS-gs~DGtI~IWDl~t~~~---~~~~l~~~~~~ 436 (1407)
+ ..++. |.+|++......... .........+..++|+|+|++|++ +..++.|.+||+.+++. ....
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~------- 217 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV------- 217 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-------
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-------
Confidence 5 55577 999999643322111 122233456789999999996655 45689999999988775 2211
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEEecC----CCC---eEEEEEecCCCCE
Q psy6522 437 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVLKGH----TNE---VFVLESHPFDSRV 507 (1407)
Q Consensus 437 ~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~--l~~l~gH----~~~---V~sLafsP~dg~~ 507 (1407)
.....+..++|+|+|++|+++...++.|.+||+.+++. +..+..+ ... +..++|+| ++++
T Consensus 218 ----------~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~ 286 (331)
T 3u4y_A 218 ----------GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETK 286 (331)
T ss_dssp ----------ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSE
T ss_pred ----------cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCE
Confidence 12244567999999998888765578899999999887 4444433 222 24589999 8887
Q ss_pred EEEEe-CCCcEEEEECCCC
Q psy6522 508 LLSAG-HDGLIIIWDILSS 525 (1407)
Q Consensus 508 LaSgs-~DG~V~IWDi~sg 525 (1407)
|++++ .++.|.+||+...
T Consensus 287 l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 287 LFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCcEEEEEecCC
Confidence 76555 5679999999765
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1.6e-20 Score=210.67 Aligned_cols=258 Identities=14% Similarity=0.083 Sum_probs=196.1
Q ss_pred EEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-CceEEEEeccC-CceEEEEecc
Q psy6522 221 TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LAPISVLVGHQ-GIITGVNFCP 298 (1407)
Q Consensus 221 TGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t-g~~v~~l~~H~-~~VtsLafsp 298 (1407)
+++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++....+..|. ..|.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34578999999999888764 555899999999999999999987 78999999999 88777666663 6789999999
Q ss_pred CCCCCceEEEEEe--cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEE-EeeCCceEEEEec
Q psy6522 299 LEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA-TGSGDHHVRVYKM 375 (1407)
Q Consensus 299 d~~~~~~~LaSgs--~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~La-sgs~DG~I~IwDl 375 (1407)
++ .+|++++ .++.+.+|.+.......... .....+.+++|+|++++|+ +++.++.+.||++
T Consensus 95 dg----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 95 DG----ALYAISDKVEFGKSAIYLLPSTGGTPRLM------------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp TS----SEEEEEECTTTSSCEEEEEETTCCCCEEC------------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred CC----CEEEEEEeCCCCcceEEEEECCCCceEEe------------ecCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 77 8888888 44677787765432111111 1113488899999999877 6778899999997
Q ss_pred cCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEE
Q psy6522 376 DGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVT 453 (1407)
Q Consensus 376 ~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vt 453 (1407)
+... .....+..|...+.+++|+|++.+|++++ .++.+.||++.. +.... ....+...+.
T Consensus 159 ~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~ 220 (297)
T 2ojh_A 159 DIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE----------------RITDSAYGDW 220 (297)
T ss_dssp ETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE----------------ECCCCSEEEE
T ss_pred ECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE----------------EEecCCcccC
Confidence 4322 22345566788899999999999887766 589999998863 22111 1122456788
Q ss_pred EEEECCCCCEEEEEEec----------CCeEEEEECCCCce--EEEEecCCCCeEEEEEecCCCCEEEEEeCCC
Q psy6522 454 MVAWDASDRWVITAINF----------NFQIKIWDAFNGDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHDG 515 (1407)
Q Consensus 454 slafSpdg~~Lasgs~~----------DG~I~IWDl~tg~~--l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG 515 (1407)
.++|+|++++|++++.. ++.|++||+.+++. +..+.+|...+.+++|+| +++.|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEecc
Confidence 99999999999988762 25799999998876 444558888999999999 999888887653
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=5.5e-19 Score=205.16 Aligned_cols=285 Identities=10% Similarity=0.011 Sum_probs=211.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-------CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeC
Q psy6522 204 LSAVFCVLFDKLGEVIVTGAD-------DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNL 275 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~-------DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSg-s~DGtIrVWDl 275 (1407)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+.. ...+..++|++++++|+++ ..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 356889999999999988874 56899999999999888874 3457889999999965554 55799999999
Q ss_pred CCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC
Q psy6522 276 QTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 355 (1407)
Q Consensus 276 ~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS 355 (1407)
.+++.+..+..+... .+.. .....+.+++|+
T Consensus 119 ~~~~~~~~~~~~~~~------~~~~-------------------------------------------~~~~~~~~~~~s 149 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRK------RTEE-------------------------------------------VRPLQPRELVAD 149 (353)
T ss_dssp TTCCEEEEEESCCCC------CCSS-------------------------------------------CCCCEEEEEEEE
T ss_pred CCCeeEEEEecCCCc------cccc-------------------------------------------cCCCCCceEEEC
Confidence 988876666543211 0000 000234667888
Q ss_pred CCCceEEEee--CCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccC
Q psy6522 356 PGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMN 433 (1407)
Q Consensus 356 pdg~~Lasgs--~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~ 433 (1407)
|+|+++++++ .++.|.+||+. ....+..+..+...+.+++|+|++++|++++.++.|.+||+.+++.......
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-- 224 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGG---NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL-- 224 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETT---TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--
T ss_pred CCCCEEEEEecCCCceEEEEcCC---CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--
Confidence 8887766665 46778888873 2333444443555688999999999999999999999999998875543210
Q ss_pred cCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEE-Ee
Q psy6522 434 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLS-AG 512 (1407)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaS-gs 512 (1407)
....+...+..++|+|++++|+++...++.|.+||..+++.+..+..+.. ..++|+| ++++|+. ..
T Consensus 225 ----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~-dg~~l~v~~~ 291 (353)
T 3vgz_A 225 ----------LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNP-ARNEAYVTHR 291 (353)
T ss_dssp ----------CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEET-TTTEEEEEET
T ss_pred ----------CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECC-CCCEEEEEEC
Confidence 01123456788999999999988887569999999999999888875543 5689999 8885554 44
Q ss_pred CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCC
Q psy6522 513 HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 564 (1407)
Q Consensus 513 ~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG 564 (1407)
.++.|.+||+.++ +.+..+. ....+.+++|+|||++|+++...+
T Consensus 292 ~~~~v~~~d~~~~--~~~~~~~------~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 292 QAGKVSVIDAKSY--KVVKTFD------TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTT--EEEEEEE------CCSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCeEEEEECCCC--eEEEEEe------cCCCCCeEEEcCCCCEEEEEEccc
Confidence 7999999999988 5555544 234688999999999888877654
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=3.6e-19 Score=205.58 Aligned_cols=290 Identities=10% Similarity=0.032 Sum_probs=201.1
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEec-CCceeEEeeccccc-cc
Q psy6522 252 IAIDNRNIL-LAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDID-IS 328 (1407)
Q Consensus 252 LafSpDg~l-LaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~-DGtI~vWDl~t~~~-~~ 328 (1407)
..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++ .+|++++. ++.|.+||+.++.. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDC----SNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSS----CEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCC----CEEEEEeCCCCeEEEEECCCCceeEE
Confidence 345665554 6777788999999999999988888777777 99999976 65555554 89999999987743 11
Q ss_pred eeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc---eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCE
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLR 405 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG---~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~ 405 (1407)
... .+.....+++|+|+|++|+++..++ .|.+||+.. ...+..+. +.....+++|+|+|++
T Consensus 78 ~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~-~~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 78 AIQ------------EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIP-IPYDAVGIAISPNGNG 141 (331)
T ss_dssp EEE------------ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEE-CCTTEEEEEECTTSSC
T ss_pred ecc------------cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEE-CCCCccceEECCCCCE
Confidence 111 1223344499999999999666553 899999943 23333333 3445689999999985
Q ss_pred EE-EEeCCCe-EEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy6522 406 FV-SGSRDGT-ALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 483 (1407)
Q Consensus 406 La-Sgs~DGt-I~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~ 483 (1407)
|+ ++..++. |.+|++.......... . ...........++|+|+|++|++++..++.|.+||+.+++
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~--~----------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTG--Q----------EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEE--E----------EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EEEEecCCCceEEEEEECCCCcEeecC--C----------ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 54 4456688 9999987543221110 0 0011234478899999999888877668999999999999
Q ss_pred e---EEEEecCCCCeEEEEEecCCCCEEEEE-eCCCcEEEEECCCCCccceeeeeeeec--CCCCCceeEEEECCCCCEE
Q psy6522 484 L---VQVLKGHTNEVFVLESHPFDSRVLLSA-GHDGLIIIWDILSSKQRGYKWFHNIVE--GQGEGALFDGKWSPDGTTC 557 (1407)
Q Consensus 484 ~---l~~l~gH~~~V~sLafsP~dg~~LaSg-s~DG~V~IWDi~sgk~~~l~~~~~~~~--g~~~~~I~slafSpDG~~L 557 (1407)
. +..+..+ ..+..++|+| ++++|+.+ ..++.|.+||+.+++...+..+...+. ......+..++|+|||++|
T Consensus 210 ~~~~~~~~~~~-~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 287 (331)
T 3u4y_A 210 NITLLNAVGTN-NLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKL 287 (331)
T ss_dssp SCEEEEEEECS-SCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEE
T ss_pred ccceeeeccCC-CCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEE
Confidence 8 7777754 5678899999 89866555 457899999999884333444332111 1111223568999999998
Q ss_pred EEEeC-CCeEEEEEcCCCcc
Q psy6522 558 ALTDS-YGHLLVYGLGGFKR 576 (1407)
Q Consensus 558 Asgs~-DG~I~Iwdl~sg~~ 576 (1407)
++++. ++.|.+|++.+...
T Consensus 288 ~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 288 FISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEETTTTEEEEEETTSCEE
T ss_pred EEecCCCCcEEEEEecCCcc
Confidence 76665 56999999987543
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=3e-19 Score=205.32 Aligned_cols=294 Identities=11% Similarity=0.030 Sum_probs=208.8
Q ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCCCC--CeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCceEEEEec-c----C
Q psy6522 217 EVIVTGADDLLIKLWRARDGKLLATLRGCSG--EISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVG-H----Q 288 (1407)
Q Consensus 217 ~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~--~ItsLafSpDg~lLa-Sgs~DGtIrVWDl~tg~~v~~l~~-H----~ 288 (1407)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++|+ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999999888873332 588999999998665 455578999999999998877653 2 2
Q ss_pred CceEEEEeccCCCCCceEEEEEe------------cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC
Q psy6522 289 GIITGVNFCPLEVNGFNYLASTS------------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~LaSgs------------~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
..+.+++|+|++ .+|++++ .++.|.+||+.++........ ...+.+++|+|
T Consensus 82 ~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------~~~~~~~~~s~ 144 (337)
T 1pby_B 82 KSLFGAALSPDG----KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------PRQITMLAWAR 144 (337)
T ss_dssp ECTTCEEECTTS----SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-------------CSSCCCEEECT
T ss_pred ccccceEECCCC----CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-------------CCCcceeEECC
Confidence 257789999976 7777775 579999999977633222111 13467789999
Q ss_pred CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEE--EEEccCCceEEeeeccCc
Q psy6522 357 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL--IWYYKCSQWRFIRLDMNT 434 (1407)
Q Consensus 357 dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~--IWDl~t~~~~~~~l~~~~ 434 (1407)
+|++|+++ ++.|.+||+.+. ..+..+..+. ....+.|+|++..|+..+..+... +|....
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~------------ 206 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAG---TLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTAR------------ 206 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTT---EEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEB------------
T ss_pred CCCEEEEe--CCeEEEEECCCC---cEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccc------------
Confidence 99988888 678999998432 2333333322 122347889988776655444332 221110
Q ss_pred CCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE-EEEecCCCCeEEEEEecCCCCEEEEEeC
Q psy6522 435 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV-QVLKGHTNEVFVLESHPFDSRVLLSAGH 513 (1407)
Q Consensus 435 ~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l-~~l~gH~~~V~sLafsP~dg~~LaSgs~ 513 (1407)
..++..... .. ...|.+||+.+++.. ..+..+...+.+++|+| ++++|+++
T Consensus 207 -----------------------~~~~~~~~~-~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~-- 258 (337)
T 1pby_B 207 -----------------------KDIDPADPT-AY-RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA-- 258 (337)
T ss_dssp -----------------------TTSCTTSGG-GE-EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--
T ss_pred -----------------------ccccccccc-cc-ccceEEEeCCCCCceEeecCCCCCceeeEEECC-CCCEEEEe--
Confidence 000000000 01 236899999998874 23445667889999999 99988888
Q ss_pred CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 514 DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 514 DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
++.|.+||+.++ +.+..+. ....+.+++|+|||++|++++.++.|.+||+.+++.+..++
T Consensus 259 ~~~v~~~d~~~~--~~~~~~~------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 259 YNVLESFDLEKN--ASIKRVP------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ESEEEEEETTTT--EEEEEEE------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEECCCC--cCcceec------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 799999999887 5555443 23457899999999999999999999999999998776554
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=5.5e-20 Score=236.47 Aligned_cols=314 Identities=14% Similarity=0.101 Sum_probs=215.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCC---ceEEEEeccCCCCCceEEEEEecC---------C
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTSTD---------G 314 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~---~VtsLafspd~~~~~~~LaSgs~D---------G 314 (1407)
..+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|++ ++|++++.+ +
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg----~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR----EYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS----SEEEEEESCCCCSSSCCCS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC----CEEEEEecCccceeeccee
Confidence 34678999999998876 6899999999999998888877765 49999999987 889988775 6
Q ss_pred ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCC-
Q psy6522 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDK- 393 (1407)
Q Consensus 315 tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~- 393 (1407)
.|.+||+.++... ... ....+...+.+++|||||+.||+++. +.|++|++.+.. . ......+...
T Consensus 92 ~i~~~d~~~~~~~-~l~---------~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~--~~~~~~~~~~~ 157 (723)
T 1xfd_A 92 YYVLSKIPHGDPQ-SLD---------PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-A--IRVVSTGKEGV 157 (723)
T ss_dssp EEEEEESSSCCCE-ECC---------CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-C--EEEECCCBTTT
T ss_pred eEEEEECCCCceE-ecc---------CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-e--EEEecCCCCCc
Confidence 7789999877431 110 11123345788999999999999886 789999985432 2 2222222222
Q ss_pred -----------------cceEEEcCCCCEEEEEeCCC----------------------------------eEEEEEccC
Q psy6522 394 -----------------VDSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKC 422 (1407)
Q Consensus 394 -----------------V~sIafSpdg~~LaSgs~DG----------------------------------tI~IWDl~t 422 (1407)
+.+++|+|||+.|++++.++ .|++||+.+
T Consensus 158 ~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 37899999999999887553 678888776
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCceEEEEecC-CCCeE--
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGDLVQVLKGH-TNEVF-- 496 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~---DG~I~IWDl~tg~~l~~l~gH-~~~V~-- 496 (1407)
++...... . ......+...+..++|+|||++|++.... +..|++||+.++++...+..+ ...+.
T Consensus 238 ~~~~~~l~-------~---~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 307 (723)
T 1xfd_A 238 PTHDLEMM-------P---PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (723)
T ss_dssp SCCCEECC-------C---CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred CceeEEee-------C---CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc
Confidence 65311110 0 00011235678999999999988777541 357999999999987776543 34443
Q ss_pred --EEEEecCCCCEEEE--EeCCC------cEEEEE-CCCCCccceeeeeeeecCCCCCceeE-EEECCCCCEEEEEeCC-
Q psy6522 497 --VLESHPFDSRVLLS--AGHDG------LIIIWD-ILSSKQRGYKWFHNIVEGQGEGALFD-GKWSPDGTTCALTDSY- 563 (1407)
Q Consensus 497 --sLafsP~dg~~LaS--gs~DG------~V~IWD-i~sgk~~~l~~~~~~~~g~~~~~I~s-lafSpDG~~LAsgs~D- 563 (1407)
.++|+| |++.|+. +..++ .|.+|| ..++...+...+. .+...+.. ++|+|||+.|++.+.+
T Consensus 308 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~ 381 (723)
T 1xfd_A 308 NEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT-----SGDWDVTKILAYDEKGNKIYFLSTED 381 (723)
T ss_dssp CCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC-----CSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred CCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee-----cCCeEEEeeeEEcCCCCEEEEEEcCC
Confidence 789999 8886664 45677 577777 3444200122222 12334544 6999999999877665
Q ss_pred --CeEEEEEcCCCc--cccccC---------CceEecCCCcEEEe
Q psy6522 564 --GHLLVYGLGGFK--RPQNIP---------RELFFHTDYRTLNR 595 (1407)
Q Consensus 564 --G~I~Iwdl~sg~--~~~~lp---------~~v~Fs~D~~~Lv~ 595 (1407)
+.+.||++.... ....+. ..+.|++|++.++.
T Consensus 382 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 382 LPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp CTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred CCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 788999886432 222221 25789999998874
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=2.8e-19 Score=229.58 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=207.2
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-----Cc
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT-----LA 279 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t-----g~ 279 (1407)
..|.+++|||| ++|+.+. ++.|++||+.+++... +..+...+.+++|||||++|+++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666654 5999999999887654 44577889999999999999996 589999999998 77
Q ss_pred eEEEEeccCCc--------------eEEEEeccCCCCCceEEEEEe---------------------------------c
Q psy6522 280 PISVLVGHQGI--------------ITGVNFCPLEVNGFNYLASTS---------------------------------T 312 (1407)
Q Consensus 280 ~v~~l~~H~~~--------------VtsLafspd~~~~~~~LaSgs---------------------------------~ 312 (1407)
.......+... +.++.|+|++ ++|++++ .
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG----SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS----SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCC----CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 76655444443 4899999987 8888887 3
Q ss_pred CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc-----eEEEEeccCCCCCceeEEE
Q psy6522 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEV 387 (1407)
Q Consensus 313 DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG-----~I~IwDl~~~~~~~~i~~l 387 (1407)
+..|.+||+.++...... ....+...+.+++|+|+|++|++++.++ .|.+||+.+......+..
T Consensus 234 ~~~l~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~- 302 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQ----------TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV- 302 (706)
T ss_dssp EEEEEEEETTTTEEEECC----------CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred eeEEEEEECCCCceEeec----------cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-
Confidence 467889998766321111 0113446789999999999999887665 899999854312222211
Q ss_pred eecCC---CcceEEEcC--CCCEEEEEeCCCeEEEEEcc-CCceEEeeeccCcCCCCCccccccccccccEEE-EEECCC
Q psy6522 388 EEHSD---KVDSIQWSH--SHLRFVSGSRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDAS 460 (1407)
Q Consensus 388 ~~h~~---~V~sIafSp--dg~~LaSgs~DGtI~IWDl~-t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vts-lafSpd 460 (1407)
..+.. .+.+++|+| +|.+|++++.||.++||.+. .+..... ...+...+.. ++|+|+
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~----------------l~~~~~~v~~~~~~spd 366 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ----------------VTKGEWEVTNFAGFDPK 366 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE----------------CCCSSSCEEEEEEECTT
T ss_pred ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe----------------cCCCCeEEEeeeEEcCC
Confidence 12222 347889999 99999999999999999876 3332211 1123445665 799999
Q ss_pred CCEEEEEEecCC----eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCC----CcEEEEECCCC
Q psy6522 461 DRWVITAINFNF----QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSS 525 (1407)
Q Consensus 461 g~~Lasgs~~DG----~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~D----G~V~IWDi~sg 525 (1407)
++.|++++..++ .|..||+.+++ +..+. |...+.+++|+| ++++|+.++.+ +.|++||+.++
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCC
Confidence 999988877454 78888888776 33443 677799999999 88888776543 56999999887
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=4.1e-19 Score=204.73 Aligned_cols=281 Identities=16% Similarity=0.121 Sum_probs=190.9
Q ss_pred EEEEEECCCeEEEEeCC-CCc--eEEEEeccCCceEEEEeccCCCCCceEEEEEecC-CceeEEeec--cccccceeeec
Q psy6522 260 LLAAGTVDKTIRIWNLQ-TLA--PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD-GCIGFWKYK--LDIDISKTVFH 333 (1407)
Q Consensus 260 lLaSgs~DGtIrVWDl~-tg~--~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D-GtI~vWDl~--t~~~~~~~~~~ 333 (1407)
++++++.|+.|.+|++. ++. .+.. ..|...+.+++|+|++ .+|++++.+ +.|.+|++. ++.......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg----~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 79 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDK----RYLYVGVRPEFRVLAYRIAPDDGALTFAAE-- 79 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEE--
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCC----CEEEEeecCCCeEEEEEecCCCCceeeccc--
Confidence 44454779999999995 332 2333 3577788999999976 778888776 999999997 332111100
Q ss_pred cccccccccCCCCcceEEEEECCCCceEEEeeC-CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-C
Q psy6522 334 EPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-R 411 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~ 411 (1407)
+..+ ..+.+++|+|++++|++++. ++.|.+|++........+..+ .....+.+++|+|++++|++++ .
T Consensus 80 --------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 80 --------SALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp --------EECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGG
T ss_pred --------cccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCC
Confidence 1111 36788999999998876654 889999999521112222223 3345689999999999888877 8
Q ss_pred CCeEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC--CCce--EE
Q psy6522 412 DGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF--NGDL--VQ 486 (1407)
Q Consensus 412 DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~--tg~~--l~ 486 (1407)
++.|.+||+.+ +........ .........+..++|+|++++|++++..++.|.+|++. +++. +.
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPA-----------EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEE-----------EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCEEEEEEecCCCceeeeccc-----------ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 99999999987 543321100 00011234577899999999888877558999999995 3443 33
Q ss_pred EEe----cC--CCCeEEEEEecCCCCEEE-EEeCCCcEEEEECCC--CCccceeeeeeeecCCCCCceeEEEECCCCCEE
Q psy6522 487 VLK----GH--TNEVFVLESHPFDSRVLL-SAGHDGLIIIWDILS--SKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 557 (1407)
Q Consensus 487 ~l~----gH--~~~V~sLafsP~dg~~La-Sgs~DG~V~IWDi~s--gk~~~l~~~~~~~~g~~~~~I~slafSpDG~~L 557 (1407)
.+. ++ ...+..++|+| ++++|+ ++..++.|.+||+.. +....+..+. ....+.+++|+|||++|
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP------TETQPRGFNVDHSGKYL 291 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE------CSSSCCCEEECTTSSEE
T ss_pred eccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec------CCCccceEEECCCCCEE
Confidence 332 11 23567899999 887776 555799999999983 3223333322 12338899999999999
Q ss_pred EEEe-CCCeEEEEEcC--CCc
Q psy6522 558 ALTD-SYGHLLVYGLG--GFK 575 (1407)
Q Consensus 558 Asgs-~DG~I~Iwdl~--sg~ 575 (1407)
++++ .++.|.+|++. +++
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp EEECTTTCEEEEEEEETTTTE
T ss_pred EEecCCCCeEEEEEEcCCCce
Confidence 8888 57999999554 553
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=7.6e-20 Score=205.02 Aligned_cols=259 Identities=17% Similarity=0.197 Sum_probs=190.8
Q ss_pred EEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc-ccccceeeeccccccccc
Q psy6522 263 AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-DIDISKTVFHEPVMFNER 341 (1407)
Q Consensus 263 Sgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t-~~~~~~~~~~~~~~~~~~ 341 (1407)
+++.|+.|++||+.+++.. .+..|...|.+++|+|++ .+|++++ ++.|.+||+.+ +.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg----~~l~~~~-~~~i~~~d~~~~~~~~~~~~---------- 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDG----KYLLLNS-EGLLYRLSLAGDPSPEKVDT---------- 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTS----SEEEEEE-TTEEEEEESSSCCSCEECCC----------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCC----CEEEEEc-CCeEEEEeCCCCCCceEecc----------
Confidence 3457899999999988766 455688999999999977 7888876 78999999987 53221110
Q ss_pred cCCCCcceEEEEECCCCceEEEee--CCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEE-EEeCCCeEEEE
Q psy6522 342 IRPGNAHILCSSFSPGGLFLATGS--GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIW 418 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~~Lasgs--~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~La-Sgs~DGtI~IW 418 (1407)
..+...+.+++|+|++++|++++ .++.+.||.++..... ...+.. ...+.+++|+|++++|+ +++.++.+.||
T Consensus 81 -~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~ 156 (297)
T 2ojh_A 81 -GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIY 156 (297)
T ss_dssp -TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred -ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeec-CCCccceEECCCCCEEEEEECCCCceEEE
Confidence 11235678899999999999998 3455666665322211 222333 33488899999999877 78889999999
Q ss_pred EccC--CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEEecCCCCe
Q psy6522 419 YYKC--SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGHTNEV 495 (1407)
Q Consensus 419 Dl~t--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~-tg~~l~~l~gH~~~V 495 (1407)
++.. +.... ...+...+.+++|+|++++|++++..++.+.||++. .+..+..+..|...+
T Consensus 157 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 157 SMDIDSGVETR-----------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp EEETTTCCEEE-----------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred EEECCCCcceE-----------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 8653 22111 123456789999999999988877558889999876 566778888888899
Q ss_pred EEEEEecCCCCEEEEEeCC-----------CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCC
Q psy6522 496 FVLESHPFDSRVLLSAGHD-----------GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG 564 (1407)
Q Consensus 496 ~sLafsP~dg~~LaSgs~D-----------G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG 564 (1407)
..++|+| ++++|++++.+ +.|++||+.+++...+..+. .+...+.+++|+|||++|++++.+.
T Consensus 220 ~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 220 WFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CCCcccccceECCCCCEEEEEEecc
Confidence 9999999 99999888776 56999999887433333322 2456788999999999998887653
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=2.3e-18 Score=201.04 Aligned_cols=294 Identities=11% Similarity=0.100 Sum_probs=194.2
Q ss_pred EEEEEEC----CCeEEEEEcC--CCcEEE-EEeCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCCCc--eEEEEe
Q psy6522 218 VIVTGAD----DLLIKLWRAR--DGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV---DKTIRIWNLQTLA--PISVLV 285 (1407)
Q Consensus 218 ~LaTGS~----DG~V~IWDl~--tg~~l~-tl~gH~~~ItsLafSpDg~lLaSgs~---DGtIrVWDl~tg~--~v~~l~ 285 (1407)
.|++|+. ++.|.+|+++ ++++.. ....+...+..++|+|||+ |++++. ++.|.+|++.++. .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4455532 4567777654 565543 3344667788999999999 555443 6899999997665 444555
Q ss_pred ccCCceEEEEeccCCCCCceEEEEEe-cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe
Q psy6522 286 GHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364 (1407)
Q Consensus 286 ~H~~~VtsLafspd~~~~~~~LaSgs-~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg 364 (1407)
.+...+..++|+|++ .+|++++ .++.|.+|++...........................+.+++|+|+|+++++.
T Consensus 83 ~~~~~p~~~a~spdg----~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~ 158 (347)
T 3hfq_A 83 APGTPPAYVAVDEAR----QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID 158 (347)
T ss_dssp EESCCCSEEEEETTT----TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE
T ss_pred cCCCCCEEEEECCCC----CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe
Confidence 677788999999976 7777777 78999999996432211111000000000011123458899999999966666
Q ss_pred eCCceEEEEeccCCCCCceeEEEeec-CCCcceEEEcCCCCEEEE-EeCCCeEEEEEccC--CceEEeeeccCcCCCCCc
Q psy6522 365 SGDHHVRVYKMDGVDSPLGILEVEEH-SDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKC--SQWRFIRLDMNTCLPHTK 440 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~~~~i~~l~~h-~~~V~sIafSpdg~~LaS-gs~DGtI~IWDl~t--~~~~~~~l~~~~~~~~~~ 440 (1407)
..++.|.+|++........+..+..+ ...+..++|+|+|++|++ +..++.|.+|++.. +....... . ...+
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-~-~~~~--- 233 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-V-KTIP--- 233 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-E-ESSC---
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-e-eecC---
Confidence 77889999999533322222222222 235678999999996655 56789999999885 44322111 0 0000
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC---CCceEEEEecCCCCeEEEEEecCCCCEEEEEeCC-Cc
Q psy6522 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF---NGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHD-GL 516 (1407)
Q Consensus 441 ~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~---tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~D-G~ 516 (1407)
........+..++|+|||++|+++...++.|.+|++. ..+.+..+..+...+..++|+| ++++|++++.+ +.
T Consensus 234 ---~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 234 ---ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDN 309 (347)
T ss_dssp ---TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTE
T ss_pred ---CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCc
Confidence 0011224688999999999987776658999999987 2355666777777789999999 99988887764 89
Q ss_pred EEEEEC--CCC
Q psy6522 517 IIIWDI--LSS 525 (1407)
Q Consensus 517 V~IWDi--~sg 525 (1407)
|.+|++ .++
T Consensus 310 v~v~~~d~~tg 320 (347)
T 3hfq_A 310 ATLYARDLTSG 320 (347)
T ss_dssp EEEEEECTTTC
T ss_pred EEEEEEeCCCC
Confidence 999954 455
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=231.23 Aligned_cols=343 Identities=11% Similarity=-0.015 Sum_probs=222.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC---CeEEEEEcCCCCEEEEEEC---------CCeEEEEeCC
Q psy6522 209 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSG---EISDIAIDNRNILLAAGTV---------DKTIRIWNLQ 276 (1407)
Q Consensus 209 ~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~---~ItsLafSpDg~lLaSgs~---------DGtIrVWDl~ 276 (1407)
+++|+|+|++++++ .|+.|++||+.+++....+.+|.. .|.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999665554 699999999999998887776654 4999999999999999876 6899999999
Q ss_pred CCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC---------c
Q psy6522 277 TLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN---------A 347 (1407)
Q Consensus 277 tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~---------~ 347 (1407)
+++.+... .....+.+++|+|++ +.|+++. ++.|++|++.++............ ..+.++. .
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG----~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~---~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVG----SKLAYVY-QNNIYLKQRPGDPPFQITFNGREN---KIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSST----TCEEEEE-TTEEEEESSTTSCCEECCCCCBTT---TEEESSCCHHHHHHTTC
T ss_pred CCccccce-ecCcccccceECCCC----CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC---CeEcccccceeeeeccc
Confidence 88762101 112568899999987 7888775 789999999876433211111000 0001111 1
Q ss_pred ceEEEEECCCCceEEEeeCCc----------------------------------eEEEEeccCCCCC--cee---EEEe
Q psy6522 348 HILCSSFSPGGLFLATGSGDH----------------------------------HVRVYKMDGVDSP--LGI---LEVE 388 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG----------------------------------~I~IwDl~~~~~~--~~i---~~l~ 388 (1407)
...+++|||||++|++++.|. .|++||+.+.... ..+ ..+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 225899999999999987652 7889998432210 011 1123
Q ss_pred ecCCCcceEEEcCCCCEEEEEeCC----CeEEEEE----ccCCceEEeeeccCcCCCCCccccccccccccEE-----EE
Q psy6522 389 EHSDKVDSIQWSHSHLRFVSGSRD----GTALIWY----YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT-----MV 455 (1407)
Q Consensus 389 ~h~~~V~sIafSpdg~~LaSgs~D----GtI~IWD----l~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vt-----sl 455 (1407)
+|...+.+++|+||+.++++.... ..|.+|| +.++++..+.. .....+...+. .+
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~~~~ 317 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE------------HIEESRTGWAGGFFVSTP 317 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE------------EEEECSSSCSSSSSCCCC
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe------------cccccCCceEccccCCcc
Confidence 577788999999998777664432 2488888 66654321110 00011222233 67
Q ss_pred EECCCCCEEEEE-EecCC--eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeC-----CCcEEEEECCCCCc
Q psy6522 456 AWDASDRWVITA-INFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-----DGLIIIWDILSSKQ 527 (1407)
Q Consensus 456 afSpdg~~Lasg-s~~DG--~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~-----DG~V~IWDi~sgk~ 527 (1407)
+|+|||+.|+.. +..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+. ++.+.+|.+.....
T Consensus 318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV--TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE--CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE--eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 899999977663 32244 68888887776 45666666678887777 4555555554 48899998764210
Q ss_pred c-ceeeeeeeecCCCCCceeEEEECCCCCEEEEEeC-C--CeEEEEEcCCCccc
Q psy6522 528 R-GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS-Y--GHLLVYGLGGFKRP 577 (1407)
Q Consensus 528 ~-~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~-D--G~I~Iwdl~sg~~~ 577 (1407)
. ....+...+. .+...+..+.|+|||++|+.... . ..+.+|++.++++.
T Consensus 395 ~~~~~~l~~~~~-~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 395 PPSKKCVTCHLR-KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SCCEEESSTTTT-TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCceeccCccC-CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 1 1122210010 13356788999999998876432 2 46889999888754
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=6e-17 Score=190.20 Aligned_cols=313 Identities=11% Similarity=0.036 Sum_probs=202.1
Q ss_pred CCCCEEEEEEC----CCeEEEEEc--CCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEeCCC--Cc--
Q psy6522 214 KLGEVIVTGAD----DLLIKLWRA--RDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD----KTIRIWNLQT--LA-- 279 (1407)
Q Consensus 214 pdG~~LaTGS~----DG~V~IWDl--~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D----GtIrVWDl~t--g~-- 279 (1407)
+...++++|+. ++.|.+|.+ .++++......+...+..|+|+|||++|++++.+ +.|.+|++.. +.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 33446666653 568999876 4565443322277788899999999999999886 7999998865 43
Q ss_pred eEEEEeccCCceEEEEeccCCCCCceEEEEEe-cCCceeEEeeccccccceeeec--cccccccccCCCCcceEEEEECC
Q psy6522 280 PISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TDGCIGFWKYKLDIDISKTVFH--EPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 280 ~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs-~DGtI~vWDl~t~~~~~~~~~~--~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
.+..+..+......+++ ++ .+|++++ .++.|.+|++............ ....-......+...+.+++|+|
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NG----KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CS----SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EeeEeccCCCCcEEEEE--CC----CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 33344445566777887 33 4555554 6889999999754332221110 00000000112234578899999
Q ss_pred CCceEEEee-CCceEEEEeccCCCC------Cce----eEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCc
Q psy6522 357 GGLFLATGS-GDHHVRVYKMDGVDS------PLG----ILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQ 424 (1407)
Q Consensus 357 dg~~Lasgs-~DG~I~IwDl~~~~~------~~~----i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~ 424 (1407)
+|++|++++ .++.|.+|++..... ... ......+...+..++|+|+|++|++++ .++.|.+|++.++.
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 999766554 578999999854332 111 111223345678899999999887777 68999999998776
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec-CCeEEEEECC--CCc--eEEEEecCCCCeEEEE
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-NFQIKIWDAF--NGD--LVQVLKGHTNEVFVLE 499 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~-DG~I~IWDl~--tg~--~l~~l~gH~~~V~sLa 499 (1407)
+...... .....+......++|+|||++|+++... ++.|.+|++. +++ .+..+.. ...+..++
T Consensus 245 ~~~~~~~-----------~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 245 LDEIQTV-----------AADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEE-----------ESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred eEEeEEE-----------ecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 4332110 0011123345789999999999988874 5899999985 455 4444544 55788999
Q ss_pred EecCCCCEEEEEe-CCCcEEEEECC--CCCccceeeeeeeecCCCCCceeEEEEC
Q psy6522 500 SHPFDSRVLLSAG-HDGLIIIWDIL--SSKQRGYKWFHNIVEGQGEGALFDGKWS 551 (1407)
Q Consensus 500 fsP~dg~~LaSgs-~DG~V~IWDi~--sgk~~~l~~~~~~~~g~~~~~I~slafS 551 (1407)
|+| ++++|++++ .++.|.+|++. ++ ....... ..+...+.|++|.
T Consensus 313 ~sp-dg~~l~~~~~~~~~v~v~~~d~~~g--~~~~~~~----~~~~~~p~~v~~~ 360 (361)
T 3scy_A 313 ITP-NGKYLLVACRDTNVIQIFERDQATG--LLTDIKK----DIKVDKPVCLKFV 360 (361)
T ss_dssp ECT-TSCEEEEEETTTTEEEEEEECTTTC--CEEECSC----CEECSSEEEEEEE
T ss_pred ECC-CCCEEEEEECCCCCEEEEEEECCCC--cEeecce----eeeCCCCeEEEEc
Confidence 999 999888887 67899996554 55 2221111 1123467888875
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=8.1e-18 Score=194.68 Aligned_cols=284 Identities=6% Similarity=-0.078 Sum_probs=194.3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCceEEEEec
Q psy6522 209 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVG 286 (1407)
Q Consensus 209 ~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~-~~ItsLafSpDg~lLa-Sgs~DGtIrVWDl~tg~~v~~l~~ 286 (1407)
++++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 56788899999999999999999999999998887543 2578999999998665 445689999999999988877764
Q ss_pred cC------CceEEEEeccCCCCCceEEEEEecC------------CceeEEeeccccccceeeeccccccccccCCCCcc
Q psy6522 287 HQ------GIITGVNFCPLEVNGFNYLASTSTD------------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 348 (1407)
Q Consensus 287 H~------~~VtsLafspd~~~~~~~LaSgs~D------------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~ 348 (1407)
+. ..+.+++|+|++ ++|++++.+ +.|.+||+.++........ . .+...
T Consensus 84 ~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------~-~~~~~ 149 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDG----KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT---------F-PMPRQ 149 (349)
T ss_dssp CCSTTEEEECSSCEEECTTS----SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE---------E-ECCSS
T ss_pred ccccccccccccceEECCCC----CEEEEEcccccccccccccCCCeEEEEECCCccccceeee---------c-cCCCc
Confidence 32 237889999976 788888765 8999999987532221110 0 11235
Q ss_pred eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC-C-----------------------CcceEEEcCCCC
Q psy6522 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-D-----------------------KVDSIQWSHSHL 404 (1407)
Q Consensus 349 I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~-~-----------------------~V~sIafSpdg~ 404 (1407)
+.+++|+|+|+ +++++. .|.+||+... ..+..+..+. . ...++++++++.
T Consensus 150 ~~~~~~s~dg~-l~~~~~--~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 150 VYLMRAADDGS-LYVAGP--DIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp CCCEEECTTSC-EEEESS--SEEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred ccceeECCCCc-EEEccC--cEEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 78899999999 555543 4999998432 2222332221 0 223355554432
Q ss_pred EEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC-CCCEEEEEEecCCeEEEEECCCC
Q psy6522 405 RFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA-SDRWVITAINFNFQIKIWDAFNG 482 (1407)
Q Consensus 405 ~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp-dg~~Lasgs~~DG~I~IWDl~tg 482 (1407)
...... ....+..++..+++...... ......+..++|+| ++++|+++ ++.|.+||+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~ 285 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEF---------------ADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQR 285 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEE---------------EECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTT
T ss_pred CCccccccceeEEEEeccCCcEEeccc---------------ccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccC
Confidence 110000 01112224544444322211 01334678899999 99999888 579999999999
Q ss_pred ceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeee
Q psy6522 483 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 483 ~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
+.+..+..+ ..+.+++|+| ++++|++++.++.|.+||+.++ +.+..+.
T Consensus 286 ~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~--~~~~~~~ 333 (349)
T 1jmx_B 286 KLIKAANLD-HTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTL--EKVKNIK 333 (349)
T ss_dssp EEEEEEECS-SCCCEEEECS-SSSCEEEESBSSEEEEEETTTT--EEEEEEE
T ss_pred eEEEEEcCC-CCccceEECC-CCCEEEEecCCCeEEEEecccc--ceeeeee
Confidence 988887643 3577999999 8888888888999999999888 5555554
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.7e-18 Score=217.69 Aligned_cols=277 Identities=8% Similarity=-0.061 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCCEEEEEEC---CCeEEEEeCCC-
Q psy6522 204 LSAVFCVLFDKLGEVIVTGAD-DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTV---DKTIRIWNLQT- 277 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~-DG~V~IWDl~tg~~l~tl~gH~-~~ItsLafSpDg~lLaSgs~---DGtIrVWDl~t- 277 (1407)
..+|++++|+|||++||+++. ||+++||++.+++... +..|. ..|..++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 9999999997666544 55455 68999999999 78888775 45556655432
Q ss_pred --CceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC
Q psy6522 278 --LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 355 (1407)
Q Consensus 278 --g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS 355 (1407)
+... .+..+. .+...+|+|++ +...+++++.+ .+.+||+.++....... +.. .+++|+
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg--~~~~~~s~~~~-~~~l~d~~~g~~~~l~~-------------~~~--~~~~~s 158 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTG--EAVVFTGATED-RVALYALDGGGLRELAR-------------LPG--FGFVSD 158 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECS--SCEEEEEECSS-CEEEEEEETTEEEEEEE-------------ESS--CEEEEE
T ss_pred CCCccc-cccCCC-CceeeeeCCCC--CeEEEEecCCC-CceEEEccCCcEEEeec-------------CCC--ceEEEC
Confidence 3333 443332 34466888875 22345544444 45599998763221111 011 688999
Q ss_pred CCCceEEEeeCC----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEee
Q psy6522 356 PGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIR 429 (1407)
Q Consensus 356 pdg~~Lasgs~D----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG--tI~IWDl~t~~~~~~~ 429 (1407)
|||++|++++.+ +.|++||+.+.. ...+..|.+.+.+++|+|||+.|+++..+| .|++||+.+++.. ..
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 999999988777 789999984332 235677888899999999999999888898 8999999988755 21
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEE
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL 509 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~La 509 (1407)
.... ..... .........+|+|||.+++++.. ++.++||++ ++++. .+.+.|.+++|+ ++.+++
T Consensus 234 ~~~~------~~~~~--~~~~~~~~~~~spdg~~~~~~~~-~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~ 297 (582)
T 3o4h_A 234 ELPS------KDFSS--YRPTAITWLGYLPDGRLAVVARR-EGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVT 297 (582)
T ss_dssp CCSC------SHHHH--HCCSEEEEEEECTTSCEEEEEEE-TTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEE
T ss_pred cCCC------cChhh--hhhccccceeEcCCCcEEEEEEc-CCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEE
Confidence 1000 00000 00122334559999977777776 999999999 76554 345678999998 788888
Q ss_pred EEeCCCc---EEEEECC
Q psy6522 510 SAGHDGL---IIIWDIL 523 (1407)
Q Consensus 510 Sgs~DG~---V~IWDi~ 523 (1407)
+++.+.+ |.+||..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8887754 6666654
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.5e-18 Score=216.14 Aligned_cols=269 Identities=9% Similarity=-0.007 Sum_probs=196.7
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEeCCCCceEEEEeccC-CceEEEEeccCCCCCceEEEEEec---CCceeEEe
Q psy6522 246 SGEISDIAIDNRNILLAAGTV-DKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTST---DGCIGFWK 320 (1407)
Q Consensus 246 ~~~ItsLafSpDg~lLaSgs~-DGtIrVWDl~tg~~v~~l~~H~-~~VtsLafspd~~~~~~~LaSgs~---DGtI~vWD 320 (1407)
..+|.+++|+|||+.||+++. ||++.||++.++... .+..|. ..+.+++|+|+ .++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-----~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-----RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-----EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-----eEEEEeccCCCCcceEEEE
Confidence 567999999999999999887 999999999666554 444554 68999999984 57777765 45667777
Q ss_pred ecc--ccccceeeeccccccccccCCCCcceEEEEECCCCc--eEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 321 YKL--DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL--FLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 321 l~t--~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~--~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
+.. ........ . ...+...+|+|+|+ .+++++ ++.+.+||+.+. . ...+..+.. .+
T Consensus 95 ~~~~~~g~~~~l~------------~-~~~~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g-~---~~~l~~~~~--~~ 154 (582)
T 3o4h_A 95 VNTSRPGEEQRLE------------A-VKPMRILSGVDTGEAVVFTGAT-EDRVALYALDGG-G---LRELARLPG--FG 154 (582)
T ss_dssp EETTSTTCCEECT------------T-SCSBEEEEEEECSSCEEEEEEC-SSCEEEEEEETT-E---EEEEEEESS--CE
T ss_pred EeccCCCcccccc------------C-CCCceeeeeCCCCCeEEEEecC-CCCceEEEccCC-c---EEEeecCCC--ce
Confidence 654 21111100 0 12234567777775 344444 445559999533 1 222333333 88
Q ss_pred EEEcCCCCEEEEEeCC----CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 397 IQWSHSHLRFVSGSRD----GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 397 IafSpdg~~LaSgs~D----GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
++|+|||++|++++.+ +.|++||+.+++...+ ..+...+..++|||||++|+++.. ++
T Consensus 155 ~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l-----------------~~~~~~~~~~~~SpDG~~l~~~~~-~~ 216 (582)
T 3o4h_A 155 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF-----------------DSGEGSFSSASISPGMKVTAGLET-AR 216 (582)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEE-----------------CCSSCEEEEEEECTTSCEEEEEEC-SS
T ss_pred EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe-----------------ecCCCccccceECCCCCEEEEccC-CC
Confidence 9999999999988877 7899999988775432 234566799999999999996665 88
Q ss_pred --eEEEEECCCCceEEEEecCCCCeEEEE--------EecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCC
Q psy6522 473 --QIKIWDAFNGDLVQVLKGHTNEVFVLE--------SHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGE 542 (1407)
Q Consensus 473 --~I~IWDl~tg~~l~~l~gH~~~V~sLa--------fsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~ 542 (1407)
.|++||+.+++.. .+.+|...+..++ |+| |+.++++++.||.++||++ + +.... ..
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g--~~~~~--------~~ 282 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--G--ERVEA--------PQ 282 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--T--EEECC--------CS
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--C--Ceecc--------CC
Confidence 8999999999888 7888887777777 999 8899999999999999999 5 33321 23
Q ss_pred CceeEEEECCCCCEEEEEeCCCe---EEEEEcCC
Q psy6522 543 GALFDGKWSPDGTTCALTDSYGH---LLVYGLGG 573 (1407)
Q Consensus 543 ~~I~slafSpDG~~LAsgs~DG~---I~Iwdl~s 573 (1407)
+.+.+++|+ ||+++++++.+.+ |++|++.+
T Consensus 283 ~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 283 GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 568899999 9999998887754 66776654
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=2e-17 Score=192.98 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=177.5
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCc--EEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGAD---DLLIKLWRARDGK--LLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIW 273 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~---DG~V~IWDl~tg~--~l~tl~gH~~~ItsLafSpDg~lLaSgs-~DGtIrVW 273 (1407)
+..+...+..++|+|+|+ |++++. ++.|.+|++.++. .+..+..+...+..++|+|||++|++++ .++.|.+|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345567788999999999 555544 6899999998776 4555566788899999999999998888 67999999
Q ss_pred eCCC-Cc--eEEEEec---------cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccc
Q psy6522 274 NLQT-LA--PISVLVG---------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER 341 (1407)
Q Consensus 274 Dl~t-g~--~v~~l~~---------H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~ 341 (1407)
++.. +. .+..+.. +...+.+++|+|++ .++++...++.|.+|++........... .
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg----~l~v~~~~~~~v~~~~~~~~g~~~~~~~--------~ 181 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN----RLAVIDLGSDKVYVYNVSDAGQLSEQSV--------L 181 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS----CEEEEETTTTEEEEEEECTTSCEEEEEE--------E
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC----cEEEEeCCCCEEEEEEECCCCcEEEeee--------E
Confidence 9963 32 3333322 12248899999976 5777777788999999983211111100 0
Q ss_pred cCCCCcceEEEEECCCCceEEE-eeCCceEEEEeccCC-CCCceeEEEeecC------CCcceEEEcCCCCEE-EEEeCC
Q psy6522 342 IRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGV-DSPLGILEVEEHS------DKVDSIQWSHSHLRF-VSGSRD 412 (1407)
Q Consensus 342 ~~~h~~~I~~vafSpdg~~Las-gs~DG~I~IwDl~~~-~~~~~i~~l~~h~------~~V~sIafSpdg~~L-aSgs~D 412 (1407)
.......+..++|+|+|++|++ +..++.|.+|++... .....+..+.... ..+..++|+|+|++| +++..+
T Consensus 182 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~ 261 (347)
T 3hfq_A 182 TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY 261 (347)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT
T ss_pred EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC
Confidence 0111235678999999996665 566889999998532 2222222232222 347789999999977 555678
Q ss_pred CeEEEEEccCC-ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEE--ECCCCceEE
Q psy6522 413 GTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIW--DAFNGDLVQ 486 (1407)
Q Consensus 413 GtI~IWDl~t~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IW--Dl~tg~~l~ 486 (1407)
+.|.+|++... ...... ....+...+..++|+|||++|++++..++.|.+| |..++++..
T Consensus 262 ~~v~v~~~~~~g~~~~~~--------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTLIQ--------------QISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TEEEEEEECGGGCEEEEE--------------EEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CEEEEEEECCCCcEEEeE--------------EEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 99999998632 222111 0011233467899999999999988756899999 556676553
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.5e-17 Score=192.41 Aligned_cols=307 Identities=9% Similarity=-0.004 Sum_probs=197.4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccC-CceEEEEeccCCCCCce-EEEEEecCCceeEEeeccccccc
Q psy6522 251 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFN-YLASTSTDGCIGFWKYKLDIDIS 328 (1407)
Q Consensus 251 sLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~-~~VtsLafspd~~~~~~-~LaSgs~DGtI~vWDl~t~~~~~ 328 (1407)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++ . +++++..++.|.+||+.++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN----RTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC----CEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 45788899999999999999999999999888887544 257899999975 5 45566678999999998764332
Q ss_pred eeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC------------ceEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD------------HHVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D------------G~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
........ ......+.+++|+|+|++|++++.+ +.|.+||+.+......+..+. +...+.+
T Consensus 80 ~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 80 HANLSSVP------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL 152 (349)
T ss_dssp EEESCCST------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred EEEccccc------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence 22211000 0001236789999999999998865 899999995432222223333 3446899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCC-----ccc---cccccccccEEEEEECCCCCEEEEEE
Q psy6522 397 IQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHT-----KET---SDETNKKIKVTMVAWDASDRWVITAI 468 (1407)
Q Consensus 397 IafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~-----~~~---~~~~~~~~~VtslafSpdg~~Lasgs 468 (1407)
++|+|+|+ +++++ +.|.+||+.+++............+.. ... ............+++++++.......
T Consensus 153 ~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 153 MRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp EEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred eeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 99999999 55554 349999999887554321100000000 000 00000011344567776653221111
Q ss_pred ecCCeEEEEECCCCce-EEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeE
Q psy6522 469 NFNFQIKIWDAFNGDL-VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFD 547 (1407)
Q Consensus 469 ~~DG~I~IWDl~tg~~-l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~s 547 (1407)
.....+..+|..+++. +..+..+...+..++|+|.++++|+++ ++.|.+||+.++ +.+..+. ....+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--~~~~~~~------~~~~~~~ 299 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--KLIKAAN------LDHTYYC 299 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT--EEEEEEE------CSSCCCE
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC--eEEEEEc------CCCCccc
Confidence 1012233356655543 222334566789999998567777777 889999999988 5555543 1235779
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 548 GKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 548 lafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
++|+|||++|++++.++.|.+||+.+++.+..++
T Consensus 300 ~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 300 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred eEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 9999999999988889999999999988776654
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=1.2e-17 Score=191.88 Aligned_cols=272 Identities=9% Similarity=-0.056 Sum_probs=194.6
Q ss_pred eccCCceEEEecCCCCceeEEEEEc-CCCC-CEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcEEEEEeC-C----CCC
Q psy6522 177 SGPLSRFLMISSHKYSNLRQHYVNL-GHLS-AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRG-C----SGE 248 (1407)
Q Consensus 177 tg~~~~~~~i~~~~~~~~~~~~~L~-GH~~-~V~~vafSpdG~~La-TGS~DG~V~IWDl~tg~~l~tl~g-H----~~~ 248 (1407)
++..+..+.+++.. ..+....+. ++.. .+.+++|+|+|++|+ +++.++.|.+||+.+++.+..+.. + ...
T Consensus 6 ~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 6 APARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 34445555555432 334444444 3333 488999999998765 455678999999999998887763 2 226
Q ss_pred eEEEEEcCCCCEEEEEE------------CCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 249 ISDIAIDNRNILLAAGT------------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 249 ItsLafSpDg~lLaSgs------------~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++ .+|+++ ++.|
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg----~~l~~~--~~~i 156 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDG----SKLYGL--GRDL 156 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTS----SCEEEE--SSSE
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCC----CEEEEe--CCeE
Confidence 78899999999998886 579999999999888877765 4457889999976 667776 6889
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC-c-----------------------eEEE
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-H-----------------------HVRV 372 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D-G-----------------------~I~I 372 (1407)
.+||+.++.......... ... .+.|+|++..|++.+.. + .|.+
T Consensus 157 ~~~d~~~~~~~~~~~~~~----------~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQS----------WEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp EEEETTTTEEEEEECSTT----------TTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred EEEECCCCcEeeeeeccc----------cCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 999998774332221110 001 12678888766554432 2 4688
Q ss_pred EeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccE
Q psy6522 373 YKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKV 452 (1407)
Q Consensus 373 wDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~V 452 (1407)
||+.... .. ...+..+...+.+++|+|++++|+++ ++.|.+||+.+++...... ....+
T Consensus 224 ~d~~~~~-~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----------------~~~~~ 282 (337)
T 1pby_B 224 MDLETGE-MA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-----------------LPHSY 282 (337)
T ss_dssp EETTTCC-EE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-----------------CSSCC
T ss_pred EeCCCCC-ce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-----------------CCCce
Confidence 9985432 22 34455666778899999999999888 7999999998876543221 12346
Q ss_pred EEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCC
Q psy6522 453 TMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 453 tslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
.+++|+|++++|++++. ++.|.+||+.+++.+..+..+.
T Consensus 283 ~~~~~s~dg~~l~~~~~-~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGA-LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CEEEECTTSCEEEEESB-SSEEEEEETTTCCEEEEEECGG
T ss_pred eeEEECCCCCEEEEEcC-CCcEEEEECcCCcEEEEEEcCC
Confidence 68999999999999876 9999999999999988887553
No 156
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=9.1e-17 Score=186.44 Aligned_cols=260 Identities=9% Similarity=-0.022 Sum_probs=191.3
Q ss_pred CCceEEEEeccCCCCCceEEEEEec-------CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce
Q psy6522 288 QGIITGVNFCPLEVNGFNYLASTST-------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360 (1407)
Q Consensus 288 ~~~VtsLafspd~~~~~~~LaSgs~-------DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~ 360 (1407)
...+..++|+|++ +.|++++. ++.|.+||..++......... ..+.+++|+|+|++
T Consensus 40 ~~~~~~~~~s~dg----~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~ 102 (353)
T 3vgz_A 40 GKGAYEMAYSQQE----NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-------------LKPFGATINNTTQT 102 (353)
T ss_dssp ESSEEEEEEETTT----TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-------------SCCCSEEEETTTTE
T ss_pred ccCccceEECCCC----CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-------------CCcceEEECCCCCE
Confidence 3457899999976 66666663 568999999877543333211 33567899999985
Q ss_pred EEE-eeCCceEEEEeccCCCCCceeEEEeecCC---------CcceEEEcCCCCEEEEEe--CCCeEEEEEccCCceEEe
Q psy6522 361 LAT-GSGDHHVRVYKMDGVDSPLGILEVEEHSD---------KVDSIQWSHSHLRFVSGS--RDGTALIWYYKCSQWRFI 428 (1407)
Q Consensus 361 Las-gs~DG~I~IwDl~~~~~~~~i~~l~~h~~---------~V~sIafSpdg~~LaSgs--~DGtI~IWDl~t~~~~~~ 428 (1407)
+++ +..++.|.+||+.+. ..+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++....
T Consensus 103 l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTG---EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA 179 (353)
T ss_dssp EEEEETTTTEEEEEETTTC---CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred EEEEecCCCEEEEEeCCCC---eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE
Confidence 554 455799999998432 33333433322 267899999999877766 478999999998875442
Q ss_pred eeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec----CCCCeEEEEEecCC
Q psy6522 429 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG----HTNEVFVLESHPFD 504 (1407)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g----H~~~V~sLafsP~d 504 (1407)
.. .....+..++|+|++++|+++.. ++.|.+||+.+++.+..+.. +...+..++|+| +
T Consensus 180 ~~----------------~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 241 (353)
T 3vgz_A 180 IQ----------------NTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDT-A 241 (353)
T ss_dssp EC----------------CCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET-T
T ss_pred ec----------------CCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC-C
Confidence 21 01223566899999999999987 99999999999999888764 556788999999 8
Q ss_pred CCEEEEEeC-CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe-CCCeEEEEEcCCCccccccC-
Q psy6522 505 SRVLLSAGH-DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLGGFKRPQNIP- 581 (1407)
Q Consensus 505 g~~LaSgs~-DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs-~DG~I~Iwdl~sg~~~~~lp- 581 (1407)
+++|++++. ++.|.+||+.++ ..+..+. . ....+++|+|||++|++++ .++.|.+||+.+++.+..++
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~~--~~~~~~~-----~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRNG--NILAKVA-----A--PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTTC--CEEEEEE-----C--SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECCCC--cEEEEEE-----c--CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 886666654 599999999888 5555544 1 1125699999999776666 68999999999998876554
Q ss_pred ----CceEecCCCcEEE
Q psy6522 582 ----RELFFHTDYRTLN 594 (1407)
Q Consensus 582 ----~~v~Fs~D~~~Lv 594 (1407)
..+.|++|++.|.
T Consensus 313 ~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLY 329 (353)
T ss_dssp CSEEEEEEECTTSCEEE
T ss_pred CCCCCeEEEcCCCCEEE
Confidence 3678999998665
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.77 E-value=3.2e-17 Score=212.63 Aligned_cols=343 Identities=14% Similarity=0.035 Sum_probs=220.9
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCC-----eEEEEEcCCCCEEEEEECC---------CeEE
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---------KTIR 271 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~-----ItsLafSpDg~lLaSgs~D---------GtIr 271 (1407)
...+++|+|||++|+++ |+.|++||+.++++...+.+|... ...++|||||++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999999886 899999999999998888887643 2447899999999998876 5677
Q ss_pred EEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCC-----
Q psy6522 272 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGN----- 346 (1407)
Q Consensus 272 VWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~----- 346 (1407)
+||+.+++.. .+..|.+.+..++|+|++ +.|+.+ .++.|.+|++.++............. .+.++.
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG----~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~---~~~g~~~~v~~ 166 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVG----HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI---IYNGITDWVYE 166 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSST----TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT---EEESBCCHHHH
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCC----CEEEEE-ECCeEEEEECCCCceEEEcCCCCccc---eecCccccccc
Confidence 9999998754 466778889999999987 778777 46889999998764332211111000 000110
Q ss_pred ----cceEEEEECCCCceEEEeeCCc------------------------------------eEEEEeccC---CCCCce
Q psy6522 347 ----AHILCSSFSPGGLFLATGSGDH------------------------------------HVRVYKMDG---VDSPLG 383 (1407)
Q Consensus 347 ----~~I~~vafSpdg~~Lasgs~DG------------------------------------~I~IwDl~~---~~~~~~ 383 (1407)
+....++|||||+.||.++.|. .|++||+.+ ... ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~-~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN-AT 245 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC-CC
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc-ce
Confidence 2234589999999998875321 477788854 211 12
Q ss_pred eEEEe------ecCCCcceEEEcCCCCEEEEEeC----CCeEEEEEccCCc----eEEeeeccCcCCCCCcccccccccc
Q psy6522 384 ILEVE------EHSDKVDSIQWSHSHLRFVSGSR----DGTALIWYYKCSQ----WRFIRLDMNTCLPHTKETSDETNKK 449 (1407)
Q Consensus 384 i~~l~------~h~~~V~sIafSpdg~~LaSgs~----DGtI~IWDl~t~~----~~~~~l~~~~~~~~~~~~~~~~~~~ 449 (1407)
...+. +|...+..++|+|||+.++.... +..|.+||+.+++ +..... .. ...+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~----------l~--~~~~~ 313 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ----------HI--EMSTT 313 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC----------EE--EECSS
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE----------ee--eccCC
Confidence 22333 26777899999999996665532 3479999999876 221100 00 00111
Q ss_pred cc-----EEEEEECCCCCEEE-EEEecCC--eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEE-EEeC----CC-
Q psy6522 450 IK-----VTMVAWDASDRWVI-TAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL-SAGH----DG- 515 (1407)
Q Consensus 450 ~~-----VtslafSpdg~~La-sgs~~DG--~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~La-Sgs~----DG- 515 (1407)
.. ...++|+|||+.|+ ..+..+| .|++||+.+++... +......|..+.. + +++.|+ +++. .+
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~-d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-L-TSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-E-CSSEEEEEESCGGGCTTC
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-E-eCCEEEEEEecCCCCCce
Confidence 11 23578999999887 6654344 68889988776654 4434455666543 4 455544 4443 23
Q ss_pred -cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC---CeEEEEEcCCCcccc
Q psy6522 516 -LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY---GHLLVYGLGGFKRPQ 578 (1407)
Q Consensus 516 -~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D---G~I~Iwdl~sg~~~~ 578 (1407)
.|+..++..+ .....+...+ ......+..+.|||||++++..... ..+.+++..+++...
T Consensus 391 ~~ly~v~~~g~--~~~~~lt~~~-~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 391 RNLYKIQLIDY--TKVTCLSCEL-NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp BEEEEEETTEE--EEEEESSTTT-STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred eEEEEEECCCC--Ccceeecccc-CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 4444455443 2111221000 0123568889999999988776553 468888888776543
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=1e-17 Score=215.62 Aligned_cols=323 Identities=11% Similarity=0.019 Sum_probs=215.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCC---ceEEEEeccCCCCCceEEEEEec---------CCcee
Q psy6522 250 SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTST---------DGCIG 317 (1407)
Q Consensus 250 tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~---~VtsLafspd~~~~~~~LaSgs~---------DGtI~ 317 (1407)
.+++|+|||+++++ +.|+.|++||+.+++....+.+|.. .|.+++|+|++ ++|++++. ++.|.
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg----~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR----QFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS----SEEEEEEEEEECSSSCEEEEEE
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC----CeEEEEecCceeEEeecceEEE
Confidence 36899999966655 4699999999999998877766654 48999999987 88888876 78999
Q ss_pred EEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeE-------EEeec
Q psy6522 318 FWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL-------EVEEH 390 (1407)
Q Consensus 318 vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~-------~l~~h 390 (1407)
+||+.++........ ...+.+++|||||+.||++. ++.|++|++.+... ..+. .+.+|
T Consensus 94 ~~d~~~g~~~~~~~l-------------~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~-~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL-------------PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP-FQITFNGRENKIFNGI 158 (719)
T ss_dssp EEETTTTEECCSSCC-------------CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC-EECCCCCBTTTEEESS
T ss_pred EEECCCCccccceec-------------CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc-EEEecCCCcCCeEccc
Confidence 999987743110100 13477899999999999985 78999999854321 1111 11122
Q ss_pred CCC---------cceEEEcCCCCEEEEEeCCC----------------------------------eEEEEEccCCceE-
Q psy6522 391 SDK---------VDSIQWSHSHLRFVSGSRDG----------------------------------TALIWYYKCSQWR- 426 (1407)
Q Consensus 391 ~~~---------V~sIafSpdg~~LaSgs~DG----------------------------------tI~IWDl~t~~~~- 426 (1407)
... ..+++|+|||++|++++.|. .|++||+.+++..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 211 25899999999999987652 6788888766531
Q ss_pred EeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC---CeEEEEE----CCCCceEEEE----ecCCCCe
Q psy6522 427 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN---FQIKIWD----AFNGDLVQVL----KGHTNEV 495 (1407)
Q Consensus 427 ~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D---G~I~IWD----l~tg~~l~~l----~gH~~~V 495 (1407)
...+. .......+...+..++|+||++++++....+ ..|.+|| +.++++...+ .+|...+
T Consensus 239 ~~~~~---------~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 239 PQEVP---------VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp CEECC---------CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred eeEcc---------CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 00000 0011124667889999999987776654311 3589999 8887766555 4677777
Q ss_pred E-----EEEEecCCCCEEEE--EeCCC--cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC---
Q psy6522 496 F-----VLESHPFDSRVLLS--AGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY--- 563 (1407)
Q Consensus 496 ~-----sLafsP~dg~~LaS--gs~DG--~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D--- 563 (1407)
. .+.|+| |++.|+. ...+| .|.+||+.++ . ...+. .+...+..+.++ +++.|++.+.+
T Consensus 310 ~~~~~~~~~~sp-dg~~l~~~~~~~~g~~~l~~~~~~~~--~-~~~lt-----~~~~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSY-DAISYYKIFSDKDGYKHIHYIKDTVE--N-AIQIT-----SGKWEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECT-TSSCEEEEEECTTSCEEEEEESSCST--T-CEECS-----CSSSCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECC-CCCeEEEEEEccCCceEEEEEECCCC--c-eEecc-----cCceEEEEEEEE-eCCEEEEEEecCCC
Confidence 6 889999 8875443 44555 5777787666 3 22222 234457777777 88888877765
Q ss_pred --CeEEEEEcCC--Cc----cccc-c------CCceEecCCCcEEEecC----CCeeeEeeCCCCCC
Q psy6522 564 --GHLLVYGLGG--FK----RPQN-I------PRELFFHTDYRTLNRPN----GLFEPTYDEVTNLP 611 (1407)
Q Consensus 564 --G~I~Iwdl~s--g~----~~~~-l------p~~v~Fs~D~~~Lv~~~----~~~~~v~Dv~T~~~ 611 (1407)
+.+.||.+.. +. ++.. + ...+.|++|++.++... ...+.+||..++..
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 7788887753 42 2211 1 12567899998877321 12344788776653
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=3.2e-16 Score=183.98 Aligned_cols=280 Identities=11% Similarity=0.071 Sum_probs=186.9
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEECC----CeEEEEEcCC--Cc--EEEEEeCCCCCeEEEEEcCCCCEEEEE
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGADD----LLIKLWRARD--GK--LLATLRGCSGEISDIAIDNRNILLAAG 264 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~D----G~V~IWDl~t--g~--~l~tl~gH~~~ItsLafSpDg~lLaSg 264 (1407)
.+.....+ |...+..++|+|+|++|++++.+ +.|.+|++.. ++ .+..+..+......+++ ++++|+++
T Consensus 40 ~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~ 115 (361)
T 3scy_A 40 ESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA 115 (361)
T ss_dssp CEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE
T ss_pred CEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE
Confidence 34444444 77888999999999999999886 7999998865 43 34445556677888888 88877777
Q ss_pred E-CCCeEEEEeCCCCceEE----EEe--c--------cCCceEEEEeccCCCCCceEEEEE-ecCCceeEEeeccccc--
Q psy6522 265 T-VDKTIRIWNLQTLAPIS----VLV--G--------HQGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDID-- 326 (1407)
Q Consensus 265 s-~DGtIrVWDl~tg~~v~----~l~--~--------H~~~VtsLafspd~~~~~~~LaSg-s~DGtI~vWDl~t~~~-- 326 (1407)
+ .++.|.+|++.+...+. .+. + +...+.+++|+|++ ++|+++ ..++.|.+|++.....
T Consensus 116 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 116 NYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG----KYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp ETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTCCTT
T ss_pred ECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC----CEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 6 57899999997543221 111 1 12345889999976 655554 4588999999886532
Q ss_pred ----cceeeeccccccccccCCCCcceEEEEECCCCceEEEee-CCceEEEEeccCCCCCceeEEEe---ecCCCcceEE
Q psy6522 327 ----ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVE---EHSDKVDSIQ 398 (1407)
Q Consensus 327 ----~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~DG~I~IwDl~~~~~~~~i~~l~---~h~~~V~sIa 398 (1407)
+...... ..........+..++|+|+|++|++++ .++.|.+|++.. .....+..+. .+......++
T Consensus 192 ~~~~l~~~~~~-----~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~ 265 (361)
T 3scy_A 192 NKEKFLTKGTP-----EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIH 265 (361)
T ss_dssp TCCCCEEEEEE-----EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEE
T ss_pred cccceeecccc-----cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEE
Confidence 1100000 000112234578899999999887776 689999999952 2222222222 2234467999
Q ss_pred EcCCCCEEEEEeCC--CeEEEEEcc--CCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeE
Q psy6522 399 WSHSHLRFVSGSRD--GTALIWYYK--CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQI 474 (1407)
Q Consensus 399 fSpdg~~LaSgs~D--GtI~IWDl~--t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I 474 (1407)
|+|+|++|+++..+ +.|.+|++. ++....... .. ....+..++|+|+|++|++++..++.|
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~--------------~~-~g~~~~~~~~spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY--------------QL-TGIHPRNFIITPNGKYLLVACRDTNVI 330 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE--------------EE-CSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE--------------ec-CCCCCceEEECCCCCEEEEEECCCCCE
Confidence 99999988776654 899999986 444322210 00 123456799999999999998658999
Q ss_pred EEE--ECCCCceEEEE-ecCCCCeEEEEEe
Q psy6522 475 KIW--DAFNGDLVQVL-KGHTNEVFVLESH 501 (1407)
Q Consensus 475 ~IW--Dl~tg~~l~~l-~gH~~~V~sLafs 501 (1407)
.+| |..++++.... ..+...+.||.|.
T Consensus 331 ~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 331 QIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 995 55577765543 2345678888885
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=6.1e-17 Score=191.24 Aligned_cols=307 Identities=9% Similarity=-0.018 Sum_probs=202.3
Q ss_pred EEEEcCCCcEEEEEeCCCCCeEE-----EEEcCCCCEEEEEEC-CC--eEEEEeCCCCceEEEEeccCCceEEEEeccCC
Q psy6522 229 KLWRARDGKLLATLRGCSGEISD-----IAIDNRNILLAAGTV-DK--TIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300 (1407)
Q Consensus 229 ~IWDl~tg~~l~tl~gH~~~Its-----LafSpDg~lLaSgs~-DG--tIrVWDl~tg~~v~~l~~H~~~VtsLafspd~ 300 (1407)
..+|..++..+..+..|...... .+|||||++|+.++. ++ .|.+||+.+++......++...+..+.|+|++
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577888888999888876666 889999999999887 66 48889999988877776776666678899987
Q ss_pred CCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE--EEEECCCCceEEEe--------------
Q psy6522 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL--CSSFSPGGLFLATG-------------- 364 (1407)
Q Consensus 301 ~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~--~vafSpdg~~Lasg-------------- 364 (1407)
..|++++.++.|.+||+.++........ +...+. ...+++++.+++..
T Consensus 93 ----~~l~~~~~~~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 93 ----DALFYVKDGRNLMRVDLATLEENVVYQV------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp ----SEEEEEETTTEEEEEETTTCCEEEEEEC------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred ----CEEEEEeCCCeEEEEECCCCcceeeeec------------hhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 8999999999999999988743222111 112232 23458999888742
Q ss_pred --------eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC-CCCEEEEEeCC------CeEEEEEccCCceEEee
Q psy6522 365 --------SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRD------GTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 365 --------s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp-dg~~LaSgs~D------GtI~IWDl~t~~~~~~~ 429 (1407)
..+..|.+||+.+. ....+..+...+..++|+| +|..|+.++.+ ..|.++|+..+....+.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g----~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTG----ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTC----CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred hhhhhhccCCcceEEEEECCCC----ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 24468999998532 2334456677889999999 99988877653 36777777655422210
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC----eEEEEECCCCceE--EEEecCCCC---eEEEEE
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF----QIKIWDAFNGDLV--QVLKGHTNE---VFVLES 500 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG----~I~IWDl~tg~~l--~~l~gH~~~---V~sLaf 500 (1407)
.......+..++|+|||+.|+..+..++ .|++||+.+++.. ..+.++... ...++|
T Consensus 233 ---------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 297 (388)
T 3pe7_A 233 ---------------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297 (388)
T ss_dssp ---------------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred ---------------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence 0111135778899999998876654233 3999999998743 333331110 112368
Q ss_pred ecCCCCEEEEE---------eCCCcEEEEECCCCCccceeeeee---eecCCCCCceeEEEECCCCCEEEEEeC-CCeEE
Q psy6522 501 HPFDSRVLLSA---------GHDGLIIIWDILSSKQRGYKWFHN---IVEGQGEGALFDGKWSPDGTTCALTDS-YGHLL 567 (1407)
Q Consensus 501 sP~dg~~LaSg---------s~DG~V~IWDi~sgk~~~l~~~~~---~~~g~~~~~I~slafSpDG~~LAsgs~-DG~I~ 567 (1407)
+| |++.|+.. ..+..|++||+.+++...+..... .+.......+.+++|+|||+.|++++. +|...
T Consensus 298 sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~ 376 (388)
T 3pe7_A 298 VG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA 376 (388)
T ss_dssp EE-EECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred cc-CCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence 99 88777643 456789999998873221111000 000000114778899999998887664 56655
Q ss_pred EEEc
Q psy6522 568 VYGL 571 (1407)
Q Consensus 568 Iwdl 571 (1407)
||.+
T Consensus 377 l~~~ 380 (388)
T 3pe7_A 377 LYLA 380 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=3.1e-17 Score=193.80 Aligned_cols=295 Identities=12% Similarity=-0.021 Sum_probs=199.8
Q ss_pred eEEEEEcCCCCCEEE-----EEEcCCCCEEEEEEC-CC--eEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC
Q psy6522 195 RQHYVNLGHLSAVFC-----VLFDKLGEVIVTGAD-DL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV 266 (1407)
Q Consensus 195 ~~~~~L~GH~~~V~~-----vafSpdG~~LaTGS~-DG--~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~ 266 (1407)
.....|..|...+.. .+|+|||++|+.++. +| .|.+||+.+++......+|...+..++|+|||+.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 344567777766666 899999999999887 66 4888999999888777777777777899999999999999
Q ss_pred CCeEEEEeCCCCceEEEEeccCCceEEEEe--ccCCCCCceEEEEEe----------------------cCCceeEEeec
Q psy6522 267 DKTIRIWNLQTLAPISVLVGHQGIITGVNF--CPLEVNGFNYLASTS----------------------TDGCIGFWKYK 322 (1407)
Q Consensus 267 DGtIrVWDl~tg~~v~~l~~H~~~VtsLaf--spd~~~~~~~LaSgs----------------------~DGtI~vWDl~ 322 (1407)
++.|++||+.+++....+..+...+....| ++++ .+|+... .++.|.+||+.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 999999999999887777777666655554 6654 5665322 34678888887
Q ss_pred cccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeCC------ceEEEEeccCCCCCceeEEEeecC--CC
Q psy6522 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGD------HHVRVYKMDGVDSPLGILEVEEHS--DK 393 (1407)
Q Consensus 323 t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~D------G~I~IwDl~~~~~~~~i~~l~~h~--~~ 393 (1407)
++...... .+...+..++|+| +|+.|+....+ ..|.++++.+. . ...+..+. ..
T Consensus 177 ~g~~~~l~-------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~---~~~l~~~~~~~~ 239 (388)
T 3pe7_A 177 TGESTVIL-------------QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N---MRKVKTHAEGES 239 (388)
T ss_dssp TCCEEEEE-------------EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C---CEESCCCCTTEE
T ss_pred CCceEEee-------------cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c---eEEeeeCCCCcc
Confidence 76321111 1225578899999 99988877653 36777776432 1 22233333 24
Q ss_pred cceEEEcCCCCEEEEEeC-CC----eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy6522 394 VDSIQWSHSHLRFVSGSR-DG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 468 (1407)
Q Consensus 394 V~sIafSpdg~~LaSgs~-DG----tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs 468 (1407)
+..++|+|+|+.|+..+. ++ .|++||+.+++...+.... .. .. .......++|+|||+.|++..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~---~~---~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP-----AC---SH---LMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC-----CE---EE---EEECTTSSEEEEEECCC----
T ss_pred cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC-----Cc---ee---eeecCCCCeEccCCCcceeEe
Confidence 778899999997755443 22 3999999988754332100 00 00 000011136899999888653
Q ss_pred --------ecCCeEEEEECCCCceEEEEecCCC-----------CeEEEEEecCCCCEEEEEe-CCCcEEEEECC
Q psy6522 469 --------NFNFQIKIWDAFNGDLVQVLKGHTN-----------EVFVLESHPFDSRVLLSAG-HDGLIIIWDIL 523 (1407)
Q Consensus 469 --------~~DG~I~IWDl~tg~~l~~l~gH~~-----------~V~sLafsP~dg~~LaSgs-~DG~V~IWDi~ 523 (1407)
..+..|++||+.+++. ..+..|.. .+.+++|+| |++.|+.++ .+|...||.+.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp --------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred eeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEE
Confidence 2266899999988765 45555655 578899999 888777665 46776666553
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=2e-16 Score=192.44 Aligned_cols=250 Identities=13% Similarity=0.184 Sum_probs=171.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC-----------cEE-----EEEeCCCCCeEEEEEcCCCCEEE----E
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDG-----------KLL-----ATLRGCSGEISDIAIDNRNILLA----A 263 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg-----------~~l-----~tl~gH~~~ItsLafSpDg~lLa----S 263 (1407)
...+.++++++++.+|++|+.++ |+||+.... ... ..+ .|...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 45688999999999999999887 889875321 111 122 3667899999999999999 7
Q ss_pred EECCCeEEEEeCCCC--------ce---EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeee
Q psy6522 264 GTVDKTIRIWNLQTL--------AP---ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVF 332 (1407)
Q Consensus 264 gs~DGtIrVWDl~tg--------~~---v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~ 332 (1407)
|+.|++|+|||+.++ ++ +..+.+|...|.+++|+|+. ..+|++++.||+|++||+.++.....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~---~~~las~s~Dg~v~iwD~~~~~~~~~--- 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV---PSMVAVCLADGSIAVLQVTETVKVCA--- 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC---TTEEEEEETTSCEEEEEESSSEEEEE---
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC---CCEEEEEECCCeEEEEEcCCCcceee---
Confidence 888999999998765 22 34556799999999999962 38999999999999999987622111
Q ss_pred ccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec-------CCCcceEEEcCCCCE
Q psy6522 333 HEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH-------SDKVDSIQWSHSHLR 405 (1407)
Q Consensus 333 ~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h-------~~~V~sIafSpdg~~ 405 (1407)
...|...|.+++|+|+|.+|++|+.||.|++||++ . .....+..| ...|.+++|++++.+
T Consensus 188 ---------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 188 ---------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp ---------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred ---------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEecCceE
Confidence 12345789999999999999999999999999984 1 122223222 337899999998877
Q ss_pred EEE-EeCCC------eEEEEEccCCceE--EeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy6522 406 FVS-GSRDG------TALIWYYKCSQWR--FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 476 (1407)
Q Consensus 406 LaS-gs~DG------tI~IWDl~t~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~I 476 (1407)
+++ +..+| .+++|++...... ......... .............+.+-++.+++++++...+.|.|
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~------~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEP------CYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCS------SCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccC------CCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 655 33443 3899999864210 000000000 00000111112233444677788877775666777
Q ss_pred EECC
Q psy6522 477 WDAF 480 (1407)
Q Consensus 477 WDl~ 480 (1407)
+...
T Consensus 329 l~~~ 332 (434)
T 2oit_A 329 LARQ 332 (434)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7643
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2.3e-15 Score=178.03 Aligned_cols=290 Identities=9% Similarity=0.010 Sum_probs=188.1
Q ss_pred EEEEEECC--CeEEEEEc--CCCcEEE--EEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC-CCceEEEEecc-C
Q psy6522 218 VIVTGADD--LLIKLWRA--RDGKLLA--TLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ-TLAPISVLVGH-Q 288 (1407)
Q Consensus 218 ~LaTGS~D--G~V~IWDl--~tg~~l~--tl~-gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~-tg~~v~~l~~H-~ 288 (1407)
+|++|+.. +.|.+|++ .++++.. ... ++...+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 46777765 4565432 221 244578899999999999999887 99999997 77665433211 1
Q ss_pred CceEEEEeccCCCCCceE--EEEEe-------------cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 289 GIITGVNFCPLEVNGFNY--LASTS-------------TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~--LaSgs-------------~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
+.+.+++|+|++ ++ ++++. .+|++.+|++............. ...+...+.+++
T Consensus 83 g~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~ 151 (365)
T 1jof_A 83 GHPRANDADTNT----RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY-------EYQENTGIHGMV 151 (365)
T ss_dssp SSGGGGCTTSCC----EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE-------ECCTTCCEEEEE
T ss_pred CCCccEEECCCC----CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE-------EeCCCCcceEEE
Confidence 335678999976 63 44543 68999999997432111111000 011335689999
Q ss_pred ECCCCceEEEee-CCceEEEEeccCCCCCceeEEEe--ecCCCcceEEEcCCCCEEEEEeC-CCeEEEEEcc--CCceEE
Q psy6522 354 FSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSR-DGTALIWYYK--CSQWRF 427 (1407)
Q Consensus 354 fSpdg~~Lasgs-~DG~I~IwDl~~~~~~~~i~~l~--~h~~~V~sIafSpdg~~LaSgs~-DGtI~IWDl~--t~~~~~ 427 (1407)
|+|+|++|+++. .++.|.+|++........+..+. .|...+..++|+|+|++|++++. ++.|.+|++. +++...
T Consensus 152 ~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 999999888765 36799999995222222222332 23566889999999998888774 7899999875 454321
Q ss_pred eeeccCcCCCCCccccccccccc------cEEEEE-ECCCCCEEEEEEecCC-----eEEEEECC-CCceEE---EEecC
Q psy6522 428 IRLDMNTCLPHTKETSDETNKKI------KVTMVA-WDASDRWVITAINFNF-----QIKIWDAF-NGDLVQ---VLKGH 491 (1407)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~~~------~Vtsla-fSpdg~~Lasgs~~DG-----~I~IWDl~-tg~~l~---~l~gH 491 (1407)
..... ...+. ....+.. .+..++ |+|||++|+++...+. .|.+|++. ++++.. .+..+
T Consensus 232 ~~~~~-~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~ 305 (365)
T 1jof_A 232 THHSF-PLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP 305 (365)
T ss_dssp EEEEE-ESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred ccceE-EcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence 00000 00000 0011111 578899 9999999988765333 89999986 676544 23345
Q ss_pred CCCeEEEEEecC--CCCEEEEEeCC-CcEEEEECCCC
Q psy6522 492 TNEVFVLESHPF--DSRVLLSAGHD-GLIIIWDILSS 525 (1407)
Q Consensus 492 ~~~V~sLafsP~--dg~~LaSgs~D-G~V~IWDi~sg 525 (1407)
...+..++|+|. ++++|++++.+ +.|.||++...
T Consensus 306 ~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 556778899995 58889888864 89999998765
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=3.4e-16 Score=184.67 Aligned_cols=309 Identities=9% Similarity=0.044 Sum_probs=200.1
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy6522 207 VFCVLFDKLGEVIVTGADD---LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 283 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~D---G~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~ 283 (1407)
+.+++|+|||++|+..... ..|.+||+.+++......++...+..+.|+|||++|+.++.++.|.+|++.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7788999999998877653 3788999988876554443333344488999999999999999999999998887666
Q ss_pred EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE
Q psy6522 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 363 (1407)
Q Consensus 284 l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las 363 (1407)
+..+.. |++++ ..|+..+.+....+|.. .+.|+|+++.++.
T Consensus 118 ~~~~~~------~~~~g----~~l~~~~~~~~~~~~~~-----------------------------~~~~spdg~~~~~ 158 (396)
T 3c5m_A 118 YTVDEE------WKGYG----TWVANSDCTKLVGIEIL-----------------------------KRDWQPLTSWEKF 158 (396)
T ss_dssp EECCTT------EEEEE----EEEECTTSSEEEEEEEE-----------------------------GGGCCCCCSHHHH
T ss_pred Eecccc------cCCCC----CEEEeccCCcccccccc-----------------------------ccccCCCCcceee
Confidence 654543 55544 56665555544444321 1346788887765
Q ss_pred e-----eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC-CCCEEEEEeCC------CeEEEEEccCCceEEeeec
Q psy6522 364 G-----SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRD------GTALIWYYKCSQWRFIRLD 431 (1407)
Q Consensus 364 g-----s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp-dg~~LaSgs~D------GtI~IWDl~t~~~~~~~l~ 431 (1407)
+ ..+..|.+||+.+. . ...+..+...+..+.|+| ++..|+..+.+ ..|.+||+..+....+.
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g-~---~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-- 232 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETG-E---LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-- 232 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTC-C---EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS--
T ss_pred eeeccCCCcceEEEEECCCC-c---EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee--
Confidence 5 35678999998432 2 223335677789999999 78877766543 35788887655422210
Q ss_pred cCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCE
Q psy6522 432 MNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRV 507 (1407)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D----G~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~ 507 (1407)
. ......+..++|+|||++|++++..+ +.|++||+.+++........ . +. +.|+|.++++
T Consensus 233 ------------~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~ 296 (396)
T 3c5m_A 233 ------------E-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSL 296 (396)
T ss_dssp ------------C-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSE
T ss_pred ------------c-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCce
Confidence 0 01133578899999999888776522 45999999988765433222 2 33 7888756777
Q ss_pred EEEEe----------------CCCcEEEEECCCCCccceeeeeeee---cCCCCCceeEEEECCCCCEEEEEeC-CCe--
Q psy6522 508 LLSAG----------------HDGLIIIWDILSSKQRGYKWFHNIV---EGQGEGALFDGKWSPDGTTCALTDS-YGH-- 565 (1407)
Q Consensus 508 LaSgs----------------~DG~V~IWDi~sgk~~~l~~~~~~~---~g~~~~~I~slafSpDG~~LAsgs~-DG~-- 565 (1407)
|++++ .++.|++||+.+++...+....... .......+..++|+|||+.|++++. ++.
T Consensus 297 l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 297 MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp EEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 77755 3478999999887322211100000 0000002566899999999887765 444
Q ss_pred EEEEEcCCCcc
Q psy6522 566 LLVYGLGGFKR 576 (1407)
Q Consensus 566 I~Iwdl~sg~~ 576 (1407)
|+++++.++..
T Consensus 377 l~~~~~~~~~~ 387 (396)
T 3c5m_A 377 IYIADVPESYK 387 (396)
T ss_dssp EEEEECCTTCC
T ss_pred EEEEEEccccc
Confidence 55555555543
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.73 E-value=2.2e-16 Score=192.14 Aligned_cols=274 Identities=10% Similarity=0.049 Sum_probs=182.2
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec-ccc--ccccccCC
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH-EPV--MFNERIRP 344 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~-~~~--~~~~~~~~ 344 (1407)
+.|++|+.... .+...++.+++++.. .+|++++.++ |++|+............. ... ........
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~----~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKY----GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP 90 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTT----TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCC----CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccccc
Confidence 46888765311 133457889999866 7899999888 888876532111000000 000 00001123
Q ss_pred CCcceEEEEECCCCceEE----EeeCCceEEEEeccCC--------CCCceeEEEeecCCCcceEEEcCC-CCEEEEEeC
Q psy6522 345 GNAHILCSSFSPGGLFLA----TGSGDHHVRVYKMDGV--------DSPLGILEVEEHSDKVDSIQWSHS-HLRFVSGSR 411 (1407)
Q Consensus 345 h~~~I~~vafSpdg~~La----sgs~DG~I~IwDl~~~--------~~~~~i~~l~~h~~~V~sIafSpd-g~~LaSgs~ 411 (1407)
+...|.+++|+|+|++|+ +|+.|+.|+|||+... .....+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 456799999999999999 7888999999998532 111124455679999999999998 789999999
Q ss_pred CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecC
Q psy6522 412 DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH 491 (1407)
Q Consensus 412 DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH 491 (1407)
||+|++||++++...... ..|...|.+++|+|+|++|++++. ||.|++||++ ++....+..|
T Consensus 171 Dg~v~iwD~~~~~~~~~~----------------~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 171 DGSIAVLQVTETVKVCAT----------------LPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp TSCEEEEEESSSEEEEEE----------------ECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTT-CCEEEEECCC
T ss_pred CCeEEEEEcCCCcceeec----------------cCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccC-CcccccccCC
Confidence 999999999987532211 236678999999999999999998 9999999998 6666666554
Q ss_pred C-------CCeEEEEEecCCCCEEEE-EeCCCc------EEEEECCCCCccceeeeeeeecC-----CCCCceeEEEECC
Q psy6522 492 T-------NEVFVLESHPFDSRVLLS-AGHDGL------IIIWDILSSKQRGYKWFHNIVEG-----QGEGALFDGKWSP 552 (1407)
Q Consensus 492 ~-------~~V~sLafsP~dg~~LaS-gs~DG~------V~IWDi~sgk~~~l~~~~~~~~g-----~~~~~I~slafSp 552 (1407)
. ..|.+++|++ +..++++ ++.||. +++|++...+......+...... ....+.+.+.+-+
T Consensus 233 ~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~ 311 (434)
T 2oit_A 233 PFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIE 311 (434)
T ss_dssp TTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEG
T ss_pred cccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhc
Confidence 3 3799999999 6666644 344543 89999986532211222221111 1122333444447
Q ss_pred CCCEEEEEeC-CCeEEEEEcC
Q psy6522 553 DGTTCALTDS-YGHLLVYGLG 572 (1407)
Q Consensus 553 DG~~LAsgs~-DG~I~Iwdl~ 572 (1407)
|.++|++++. .+.|.|+...
T Consensus 312 dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 312 EWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp GGTEEEEEETTCSBCEEEEEC
T ss_pred cCCEEEEecCCCCceeEEEec
Confidence 7777766654 4556776644
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.72 E-value=2.4e-15 Score=178.36 Aligned_cols=306 Identities=11% Similarity=0.069 Sum_probs=208.4
Q ss_pred CCCEEEEEE------CCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEeCCCC
Q psy6522 215 LGEVIVTGA------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV----------DKTIRIWNLQTL 278 (1407)
Q Consensus 215 dG~~LaTGS------~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~----------DGtIrVWDl~tg 278 (1407)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+||+++|++++. +++|.+||+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666554 3679999999999999998877665 8999999999998863 678999999999
Q ss_pred ceEEEEecc------CCceEEEEeccCCCCCceEEEEEec--CCceeEEeeccccccce-eeeccccccccccCCCCcce
Q psy6522 279 APISVLVGH------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 279 ~~v~~l~~H------~~~VtsLafspd~~~~~~~LaSgs~--DGtI~vWDl~t~~~~~~-~~~~~~~~~~~~~~~h~~~I 349 (1407)
+.+..+..+ ......++|+|++ ++|+++.. +++|.+||+.+.+.... ... ...
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg----~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--------------~~~ 153 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDG----KFIVLQNASPATSIGIVDVAKGDYVEDVTAA--------------AGC 153 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTS----SEEEEEEESSSEEEEEEETTTTEEEEEEGGG--------------TTE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCC----CEEEEECCCCCCeEEEEECCCCcEEEEEecC--------------CCc
Confidence 988887642 2356789999987 78887764 58999999987743322 111 112
Q ss_pred EEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeE----EEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCc
Q psy6522 350 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGIL----EVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ 424 (1407)
Q Consensus 350 ~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~----~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~ 424 (1407)
..+.+.|++ ..+++.+.||.+.+|++.......... .+..+..++ .+.+++++..++..+.++.|.++|+....
T Consensus 154 ~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 154 WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 225566765 567778888999888884322211010 111112222 33346777777778889999999987654
Q ss_pred eEEee-eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe----------cCCeEEEEECCCCceEEEEecCCC
Q psy6522 425 WRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN----------FNFQIKIWDAFNGDLVQVLKGHTN 493 (1407)
Q Consensus 425 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~----------~DG~I~IWDl~tg~~l~~l~gH~~ 493 (1407)
..... ...... ..............++|+++++.++++.. ..+.|.+||+.+++.+..+..+.
T Consensus 233 ~~~~~~~~~~~~-----~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 233 VKVDGPWSLLND-----EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CEEEEEEESCCH-----HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ceecccccccCc-----cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 32211 000000 00000000111112689999998888754 13489999999999999999887
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCC
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 555 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~ 555 (1407)
+.+|+|+| ++++|++++. +.|.+||..+++.+.+..+. ........++|+|||.
T Consensus 307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-----~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-----GAAEASLQVQFHPVGG 360 (361)
T ss_dssp -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEET-----TSCSSEEEEEECCCSC
T ss_pred -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEec-----cCCCCcEEEEecCCCC
Confidence 99999999 9999998887 99999999987444444432 1234577899999986
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=1.8e-15 Score=196.14 Aligned_cols=321 Identities=10% Similarity=0.021 Sum_probs=204.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCc-----eEEEEeccCCCCCceEEEEEecC--------
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI-----ITGVNFCPLEVNGFNYLASTSTD-------- 313 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~-----VtsLafspd~~~~~~~LaSgs~D-------- 313 (1407)
....+++|+|||.+|+++ |++|++||+.++++...+.+|... ...+.|+|++ ++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg----~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG----QFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS----SEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC----CEEEEEECCeeeEEEcc
Confidence 346689999999999886 999999999999988888877643 2347889987 888888876
Q ss_pred -CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeE-------
Q psy6522 314 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGIL------- 385 (1407)
Q Consensus 314 -GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~------- 385 (1407)
+.+.+||+.++.... +..+...+..++|||||+.||.+. ++.|++|++.+.. ...+.
T Consensus 91 ~~~~~~~d~~~~~~~~-------------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~-~~~lt~~g~~~~ 155 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP-SYRITWTGKEDI 155 (740)
T ss_dssp EEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC-CEECCSCCBTTT
T ss_pred ceEEEEEECCCCcEEE-------------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc-eEEEcCCCCccc
Confidence 455699998773221 122346789999999999999884 6899999985432 21111
Q ss_pred EEeecC---------CCcceEEEcCCCCEEEEEeCCCe-EEE-----------------------------------EEc
Q psy6522 386 EVEEHS---------DKVDSIQWSHSHLRFVSGSRDGT-ALI-----------------------------------WYY 420 (1407)
Q Consensus 386 ~l~~h~---------~~V~sIafSpdg~~LaSgs~DGt-I~I-----------------------------------WDl 420 (1407)
.+.++. +....+.|||||+.|+.++.|.+ +.+ ||+
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~ 235 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT 235 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET
T ss_pred eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC
Confidence 112222 12245899999999998764433 444 444
Q ss_pred cC---C---ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec---CCeEEEEECCCCc----eE--
Q psy6522 421 KC---S---QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---NFQIKIWDAFNGD----LV-- 485 (1407)
Q Consensus 421 ~t---~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~---DG~I~IWDl~tg~----~l-- 485 (1407)
.+ + +...+. .......+...+..++|+|||+.++..... +..|.+||+.+++ +.
T Consensus 236 ~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 236 DSLSSVTNATSIQIT-----------APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp TSCCSSSCCCEEEEC-----------CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred CCCCCCCcceEEEec-----------CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 43 3 111100 000001256678999999999977766541 2379999999887 22
Q ss_pred EEE--ecCCCCeE-----EEEEecCCCCEEE-EEeC-C--CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 486 QVL--KGHTNEVF-----VLESHPFDSRVLL-SAGH-D--GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 486 ~~l--~gH~~~V~-----sLafsP~dg~~La-Sgs~-D--G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
..+ .+|...|. .++|+| |++.|+ ..+. + ..|++||+.+++ .. .+. .+...+..+.+ +|+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~~~~~--~~-~lT-----~g~~~v~~~~~-~d~ 374 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQIDKKD--CT-FIT-----KGTWEVIGIEA-LTS 374 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEETTCSS--CE-ESC-----CSSSCEEEEEE-ECS
T ss_pred EEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEECCCCc--eE-ecc-----cCCEEEEEEEE-EeC
Confidence 122 45665554 788999 888776 6654 3 468889988763 22 111 22344555432 447
Q ss_pred CEEEEEeCC-------CeEEEEEcCCCcccccc----------CCceEecCCCcEEEecCC----CeeeEeeCCCC
Q psy6522 555 TTCALTDSY-------GHLLVYGLGGFKRPQNI----------PRELFFHTDYRTLNRPNG----LFEPTYDEVTN 609 (1407)
Q Consensus 555 ~~LAsgs~D-------G~I~Iwdl~sg~~~~~l----------p~~v~Fs~D~~~Lv~~~~----~~~~v~Dv~T~ 609 (1407)
+.|+..+.. .+|+..++.++.....+ .....|++|++.++.... ..+.++|..++
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 766665543 25666666655432112 126789999998763221 23446666554
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.68 E-value=1.2e-14 Score=171.69 Aligned_cols=282 Identities=10% Similarity=0.008 Sum_probs=182.5
Q ss_pred EEEEEECC--CeEEEEeC--CCCceEEE--Ee-ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec-cccccceee
Q psy6522 260 LLAAGTVD--KTIRIWNL--QTLAPISV--LV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-LDIDISKTV 331 (1407)
Q Consensus 260 lLaSgs~D--GtIrVWDl--~tg~~v~~--l~-~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~-t~~~~~~~~ 331 (1407)
.|++|+.. +.|.+|++ .+++.... .. .....+..++|+|++ ++|++++.+ .|.+|++. ++.......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg----~~l~~~~~~-~v~~~~~~~~g~~~~~~~ 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER----KNIYGAAMK-KWSSFAVKSPTEIVHEAS 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS----SEEEEEEBT-EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC----CEEEEEccc-eEEEEEECCCCCEEEeeE
Confidence 35556553 46777765 45554222 11 233467899999976 788888888 89999987 442211110
Q ss_pred eccccccccccCCCCcceEEEEECCCCce--EEEee-------------CCceEEEEeccCCCCCceeEEEe--ecCCCc
Q psy6522 332 FHEPVMFNERIRPGNAHILCSSFSPGGLF--LATGS-------------GDHHVRVYKMDGVDSPLGILEVE--EHSDKV 394 (1407)
Q Consensus 332 ~~~~~~~~~~~~~h~~~I~~vafSpdg~~--Lasgs-------------~DG~I~IwDl~~~~~~~~i~~l~--~h~~~V 394 (1407)
. ..+ +.+.+++|+|+|++ ++++. .++.+.+|++............. .+...+
T Consensus 79 ~----------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~ 147 (365)
T 1jof_A 79 H----------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGI 147 (365)
T ss_dssp E----------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCE
T ss_pred e----------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcc
Confidence 0 000 12345889999994 45553 68899999995333222111111 245678
Q ss_pred ceEEEcCCCCEEEEEe-CCCeEEEEEcc-CCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 395 DSIQWSHSHLRFVSGS-RDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 395 ~sIafSpdg~~LaSgs-~DGtI~IWDl~-t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
.+++|+|+|++|+++. .++.|.+|++. +++...... . ....+...+..++|+|||++|++++..++
T Consensus 148 ~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-~-----------~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 215 (365)
T 1jof_A 148 HGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS-V-----------DAPDPGDHPRWVAMHPTGNYLYALMEAGN 215 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-E-----------ECSSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred eEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee-E-----------ecCCCCCCCCEeEECCCCCEEEEEECCCC
Confidence 9999999999888766 46899999998 666432110 0 00012456888999999999998886578
Q ss_pred eEEEEECC--CCceEE---EEe-------cCCC------CeEEEE-EecCCCCEEEEEeCC-C-----cEEEEECC-CCC
Q psy6522 473 QIKIWDAF--NGDLVQ---VLK-------GHTN------EVFVLE-SHPFDSRVLLSAGHD-G-----LIIIWDIL-SSK 526 (1407)
Q Consensus 473 ~I~IWDl~--tg~~l~---~l~-------gH~~------~V~sLa-fsP~dg~~LaSgs~D-G-----~V~IWDi~-sgk 526 (1407)
.|.+|++. ++++.. .+. +|.. .+..++ |+| |+++|++++.+ + .|.+|++. ++
T Consensus 216 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g- 293 (365)
T 1jof_A 216 RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCG- 293 (365)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTS-
T ss_pred eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCC-
Confidence 99999765 566532 222 1222 588999 999 99988776543 2 89999996 45
Q ss_pred ccceeeeeeeecCCCCCceeEEEECC---CCCEEEEEeCC-CeEEEEEcCCC
Q psy6522 527 QRGYKWFHNIVEGQGEGALFDGKWSP---DGTTCALTDSY-GHLLVYGLGGF 574 (1407)
Q Consensus 527 ~~~l~~~~~~~~g~~~~~I~slafSp---DG~~LAsgs~D-G~I~Iwdl~sg 574 (1407)
.. ..+..... .....+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 294 -~~-~~~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 294 -SI-EKQLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -CE-EEEEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -CE-EEeeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 22 21110011 1223466789999 89999999865 89999998775
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=3.9e-15 Score=189.56 Aligned_cols=298 Identities=10% Similarity=-0.054 Sum_probs=198.0
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCcEEEEEeCCCCCeE---------EEEEc--CCCCE-EEEE
Q psy6522 199 VNLGHLSAVFCVLFDKLGEVIVTG--ADDLLIKLWRARDGKLLATLRGCSGEIS---------DIAID--NRNIL-LAAG 264 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~~LaTG--S~DG~V~IWDl~tg~~l~tl~gH~~~It---------sLafS--pDg~l-LaSg 264 (1407)
.+.+|...|..++|++++-+++++ +.++...||....+.....+..|...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456789999999999887666666 5578999999766666777777777766 66666 99998 7766
Q ss_pred EC-CCeEEEEeCC--CCceEEEEec-----cCCceEEEEeccCCCCCceEEEEEecC----------CceeEEeecc---
Q psy6522 265 TV-DKTIRIWNLQ--TLAPISVLVG-----HQGIITGVNFCPLEVNGFNYLASTSTD----------GCIGFWKYKL--- 323 (1407)
Q Consensus 265 s~-DGtIrVWDl~--tg~~v~~l~~-----H~~~VtsLafspd~~~~~~~LaSgs~D----------GtI~vWDl~t--- 323 (1407)
+. +..|.+|++. +......+.. |...+.+++|+|++ +.|++++.+ ..|.+||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg----~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER----GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT----TEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC----CEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 54 4567777765 2033455555 66788999999987 888888876 5789999876
Q ss_pred ---ccccceeeeccccccccccC-CCCcceEEEEECCCCceEEEeeCC--------ceEEEEeccCCCCCceeEE-Eeec
Q psy6522 324 ---DIDISKTVFHEPVMFNERIR-PGNAHILCSSFSPGGLFLATGSGD--------HHVRVYKMDGVDSPLGILE-VEEH 390 (1407)
Q Consensus 324 ---~~~~~~~~~~~~~~~~~~~~-~h~~~I~~vafSpdg~~Lasgs~D--------G~I~IwDl~~~~~~~~i~~-l~~h 390 (1407)
+.. .. +. .+...+..++|||||++|+.++.+ ..|++||+........... ...|
T Consensus 174 ~~~~~~-~~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~ 240 (662)
T 3azo_A 174 ADRSAV-RE------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP 240 (662)
T ss_dssp TCGGGS-EE------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred ccCCce-eE------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence 311 11 11 223566778999999999987754 4799999952221112223 3345
Q ss_pred CCCcceEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEE
Q psy6522 391 SDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAI 468 (1407)
Q Consensus 391 ~~~V~sIafSpdg~~LaSgs~DG--tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs 468 (1407)
...+..++|+|+|++++++..+| .|.+||+.++++..+... ... . ....-...+..++|++++.+++++.
T Consensus 241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~------~-~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-EEE------F-AGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-SSB------S-SCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-ccc------c-cCccccccCceEeEeCCCEEEEEEE
Confidence 67899999999999888888888 566666656664432110 000 0 0000111245688999998877766
Q ss_pred ecCCeEEEE--ECCCCceEEEEecCCCCeEEE-EEecCCCCEEEEEeCCC--cEEEEECCCC
Q psy6522 469 NFNFQIKIW--DAFNGDLVQVLKGHTNEVFVL-ESHPFDSRVLLSAGHDG--LIIIWDILSS 525 (1407)
Q Consensus 469 ~~DG~I~IW--Dl~tg~~l~~l~gH~~~V~sL-afsP~dg~~LaSgs~DG--~V~IWDi~sg 525 (1407)
. +.++|| |+.+++ +..+..|...+..+ +++. +.-++++++.+. .|.+||+.++
T Consensus 313 ~--~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 313 K--GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp S--SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTC
T ss_pred c--CccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCC
Confidence 4 777777 665555 67788888878777 4443 222334445554 4666676666
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=2.5e-13 Score=170.44 Aligned_cols=356 Identities=11% Similarity=0.028 Sum_probs=238.9
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC--CCceEEEEeccCCc
Q psy6522 213 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ--TLAPISVLVGHQGI 290 (1407)
Q Consensus 213 SpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~--tg~~v~~l~~H~~~ 290 (1407)
++.+.++++...++.|.+||..+++.+.++.. ...+..+.|+|||++|++++.|+.|.+||+. +++.+..+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 34456677777899999999999999998874 3457799999999999999999999999996 888888877544 3
Q ss_pred eEEEEec----cCCCCCceEEEEE-ecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce-EEEe
Q psy6522 291 ITGVNFC----PLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF-LATG 364 (1407)
Q Consensus 291 VtsLafs----pd~~~~~~~LaSg-s~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~-Lasg 364 (1407)
...++|+ |++ ++++++ ..+++|.++|..+.+.+................ ....+..+.+++++.. ++..
T Consensus 242 P~~ia~s~~~~pDG----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~-p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 242 ARSIETSKMEGWED----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp EEEEEECCSTTCTT----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEEEEECSSSSEEEEEE
T ss_pred CceeEEccccCCCC----CEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc-CCCceEEEEEcCCCCEEEEEe
Confidence 5799999 565 555555 456999999987765444332211000000000 0125778888887654 4445
Q ss_pred eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCcccc
Q psy6522 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS 443 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~ 443 (1407)
...|.|.++|..... ...+..+ .......++.|+|++++|+++. .++.|.++|+.+++..... ...
T Consensus 317 ~~~g~v~~vd~~~~~-~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vg---------- 383 (567)
T 1qks_A 317 KETGKILLVDYTDLN-NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTG---------- 383 (567)
T ss_dssp TTTTEEEEEETTCSS-EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECS----------
T ss_pred cCCCeEEEEecCCCc-cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-ecc----------
Confidence 567999999984322 2223333 2334566889999999887665 6789999999998754432 110
Q ss_pred ccccccc-cEEEEEECCCCCEEEEEE-ecCCeEEEEECCC-------CceEEEEecCCCCeEEEEEecCCCCEEEEEeC-
Q psy6522 444 DETNKKI-KVTMVAWDASDRWVITAI-NFNFQIKIWDAFN-------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH- 513 (1407)
Q Consensus 444 ~~~~~~~-~VtslafSpdg~~Lasgs-~~DG~I~IWDl~t-------g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~- 513 (1407)
....|.. .+. + ++|++..+++++ ..++.|.++|..+ .+.+..+......-..|.++| ++++|.....
T Consensus 384 g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~ 460 (567)
T 1qks_A 384 GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATL 460 (567)
T ss_dssp SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTT
T ss_pred CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCC
Confidence 0111221 222 2 578766665544 2368999999987 678888886644445577899 8888887653
Q ss_pred ------CCcEEEEECCCCC----ccceeeeeee---ecCCCCCceeEEEECCCCCEEEEEe-----CCCeEEEEEcCCCc
Q psy6522 514 ------DGLIIIWDILSSK----QRGYKWFHNI---VEGQGEGALFDGKWSPDGTTCALTD-----SYGHLLVYGLGGFK 575 (1407)
Q Consensus 514 ------DG~V~IWDi~sgk----~~~l~~~~~~---~~g~~~~~I~slafSpDG~~LAsgs-----~DG~I~Iwdl~sg~ 575 (1407)
.++|.++|+.+.+ ...+..+... -.+.+...+..+.|++||+.+.++. .++.|.|+|..+++
T Consensus 461 ~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 3599999998651 1111222100 0012345789999999999888774 36999999999999
Q ss_pred cccccCCceEecCCCc
Q psy6522 576 RPQNIPRELFFHTDYR 591 (1407)
Q Consensus 576 ~~~~lp~~v~Fs~D~~ 591 (1407)
....++..-...|.|+
T Consensus 541 ~~~~i~~~~~~~P~g~ 556 (567)
T 1qks_A 541 LKHVIKDERLVTPTGK 556 (567)
T ss_dssp EEEEECCTTCCSEEEE
T ss_pred EEEEeCCCcccCCCee
Confidence 8888775333444443
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=2.4e-15 Score=177.41 Aligned_cols=297 Identities=8% Similarity=-0.063 Sum_probs=198.8
Q ss_pred EEEEcCCCcEEEEEeCCCCC-----eEEEEEcCCCCEEEEEECC---CeEEEEeCCCCceEEEEeccCCceEEEEeccCC
Q psy6522 229 KLWRARDGKLLATLRGCSGE-----ISDIAIDNRNILLAAGTVD---KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLE 300 (1407)
Q Consensus 229 ~IWDl~tg~~l~tl~gH~~~-----ItsLafSpDg~lLaSgs~D---GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~ 300 (1407)
..+|..++..+..+..+... +.+++|||||++|+.+... ..|.+||+.+++......++......+.|+|++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 45578888888888766444 7889999999998877653 478899998887654433333333347899977
Q ss_pred CCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCC
Q psy6522 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS 380 (1407)
Q Consensus 301 ~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~ 380 (1407)
+.|+.++.++.|.+|++.++........ +.. |+++|..|+....+....+|..
T Consensus 93 ----~~l~~~~~~~~l~~~d~~~~~~~~~~~~------------~~~------~~~~g~~l~~~~~~~~~~~~~~----- 145 (396)
T 3c5m_A 93 ----RAFFYVKNELNLMKVDLETLEEQVIYTV------------DEE------WKGYGTWVANSDCTKLVGIEIL----- 145 (396)
T ss_dssp ----SEEEEEETTTEEEEEETTTCCEEEEEEC------------CTT------EEEEEEEEECTTSSEEEEEEEE-----
T ss_pred ----CEEEEEEcCCcEEEEECCCCCcEEEEec------------ccc------cCCCCCEEEeccCCcccccccc-----
Confidence 8999999999999999877632111110 001 5667777777666655544431
Q ss_pred CceeEEEeecCCCcceEEEcCCCCEEEEE-----eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEE
Q psy6522 381 PLGILEVEEHSDKVDSIQWSHSHLRFVSG-----SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMV 455 (1407)
Q Consensus 381 ~~~i~~l~~h~~~V~sIafSpdg~~LaSg-----s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtsl 455 (1407)
.+.|+|+++.++.+ ..+..|.+||+.+++...+. .+...+..+
T Consensus 146 ---------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-----------------~~~~~~~~~ 193 (396)
T 3c5m_A 146 ---------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-----------------QDTAWLGHP 193 (396)
T ss_dssp ---------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-----------------EESSCEEEE
T ss_pred ---------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-----------------cCCcccccc
Confidence 23477888876654 45678999999887754322 134467889
Q ss_pred EECC-CCCEEEEEEecC-----CeEEEEECCCCceEEEEecC-CCCeEEEEEecCCCCEEEEEeCC-----CcEEEEECC
Q psy6522 456 AWDA-SDRWVITAINFN-----FQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLLSAGHD-----GLIIIWDIL 523 (1407)
Q Consensus 456 afSp-dg~~Lasgs~~D-----G~I~IWDl~tg~~l~~l~gH-~~~V~sLafsP~dg~~LaSgs~D-----G~V~IWDi~ 523 (1407)
.|+| ++..|+.++... ..|.+||+.+++........ ...+..++|+| +++.|+.++.+ +.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECC
Confidence 9999 788777765412 46999998766544333321 23578899999 88877766554 449999998
Q ss_pred CCCccceeeeeeeecCCCCCceeEEEECC-CCCEEEEEe----------------CCCeEEEEEcCCCcccccc------
Q psy6522 524 SSKQRGYKWFHNIVEGQGEGALFDGKWSP-DGTTCALTD----------------SYGHLLVYGLGGFKRPQNI------ 580 (1407)
Q Consensus 524 sgk~~~l~~~~~~~~g~~~~~I~slafSp-DG~~LAsgs----------------~DG~I~Iwdl~sg~~~~~l------ 580 (1407)
+++...+..+. . .. +.|+| ||++|++++ .++.|++|++.+++.....
T Consensus 273 ~g~~~~l~~~~--------~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 342 (396)
T 3c5m_A 273 TLENEEVMVMP--------P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSW 342 (396)
T ss_dssp TCCEEEEEECC--------S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCC
T ss_pred CCCeEEeeeCC--------C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcc
Confidence 87332222111 1 22 89999 999888765 3478999999887642211
Q ss_pred ----------CCceEecCCCcEEEe
Q psy6522 581 ----------PRELFFHTDYRTLNR 595 (1407)
Q Consensus 581 ----------p~~v~Fs~D~~~Lv~ 595 (1407)
...+.|++|++.|+.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~ 367 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLF 367 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEE
Confidence 123678999988873
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=1.7e-13 Score=162.38 Aligned_cols=278 Identities=10% Similarity=-0.023 Sum_probs=191.9
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEEC----------CCeEEEEEcCCCcEEEEEeCC------CCCeEEEEEcCC
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGAD----------DLLIKLWRARDGKLLATLRGC------SGEISDIAIDNR 257 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~----------DG~V~IWDl~tg~~l~tl~gH------~~~ItsLafSpD 257 (1407)
.++..++..+..+ .++|+|||++|+++.. ++.|.+||+.+++.+.++..+ ......++|+||
T Consensus 41 ~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd 118 (361)
T 2oiz_A 41 GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD 118 (361)
T ss_dssp CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT
T ss_pred CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC
Confidence 3445566666555 8999999999998862 678999999999999888643 345778999999
Q ss_pred CCEEEEEEC--CCeEEEEeCCCCceEEE-EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecc
Q psy6522 258 NILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 334 (1407)
Q Consensus 258 g~lLaSgs~--DGtIrVWDl~tg~~v~~-l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~ 334 (1407)
|++|+++.. +++|.|||+.+++.+.. +. +.+ ...+.+.|++ ...+++.+.||.+.+|++........... .
T Consensus 119 g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~---~~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~ 192 (361)
T 2oiz_A 119 GKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNR---PRSFMTICGDGGLLTINLGEDGKVASQSR-S 192 (361)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTS---SSEEEEEETTSSEEEEEECTTSSEEEEEE-C
T ss_pred CCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCC---CeeEEEECCCCcEEEEEECCCCcEeeecc-c
Confidence 999998874 58999999999988777 43 222 2345667753 36788899999999999865322111100 0
Q ss_pred ccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee------c----CCCcceEEEcCCCC
Q psy6522 335 PVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE------H----SDKVDSIQWSHSHL 404 (1407)
Q Consensus 335 ~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~------h----~~~V~sIafSpdg~ 404 (1407)
...+..+... ..+.+++++..++..+.++.|.++|+... ....+..+.- + ......++|++++.
T Consensus 193 ----~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 193 ----KQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGD-EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp ----CCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSS-SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred ----cceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCC-CceecccccccCccccccccccCCeeEEEEecCCC
Confidence 0011111111 12334567777777778899999998432 2111111110 0 11122478999988
Q ss_pred EEEEEeC-----------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy6522 405 RFVSGSR-----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473 (1407)
Q Consensus 405 ~LaSgs~-----------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~ 473 (1407)
.++++.. .+.|.+||+.+++.+.... .+. +..++|+|||++|++++. +.
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~----------------~~~--p~~ia~spdg~~l~v~n~--~~ 326 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP----------------GRD--ALSMTIDQQRNLMLTLDG--GN 326 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE----------------CTT--CCEEEEETTTTEEEEECS--SC
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe----------------cCC--eeEEEECCCCCEEEEeCC--Ce
Confidence 7777643 3589999999887554321 122 788999999999887763 89
Q ss_pred EEEEECCCC--ceEEEEecCCCCeEEEEEecCCCC
Q psy6522 474 IKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSR 506 (1407)
Q Consensus 474 I~IWDl~tg--~~l~~l~gH~~~V~sLafsP~dg~ 506 (1407)
|.+||..++ +.+..+..+......++++| +|.
T Consensus 327 v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEECSSSSCEEEEEETTSCSSEEEEEECC-CSC
T ss_pred EEEEECCCCcceeeEEeccCCCCcEEEEecC-CCC
Confidence 999999999 99999877777888999999 664
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=8.5e-14 Score=177.18 Aligned_cols=296 Identities=9% Similarity=-0.026 Sum_probs=191.2
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEE--ECCCeEEEEeCCCCceEEEEeccCCceE---------EEEec--cCCCCCceE-
Q psy6522 241 TLRGCSGEISDIAIDNRNILLAAG--TVDKTIRIWNLQTLAPISVLVGHQGIIT---------GVNFC--PLEVNGFNY- 306 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lLaSg--s~DGtIrVWDl~tg~~v~~l~~H~~~Vt---------sLafs--pd~~~~~~~- 306 (1407)
.+.+|...|..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |++ +.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg----~~~ 93 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG----GPL 93 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS----SCE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCC----CeE
Confidence 356788999999999887677776 5578999999755556667777766665 56666 765 55
Q ss_pred EEEEec-CCceeEEeec--c-ccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC----------ceEEE
Q psy6522 307 LASTST-DGCIGFWKYK--L-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----------HHVRV 372 (1407)
Q Consensus 307 LaSgs~-DGtI~vWDl~--t-~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D----------G~I~I 372 (1407)
|+.++. +..|.+|++. . + ...... .. ....+...+.+++|+|||+.|++++.+ ..|++
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~-~~~~l~-~~------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~ 165 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGA-VPRPLT-PV------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAA 165 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCC-CCEECS-CC------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCC-CCEecc-CC------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEE
Confidence 565543 4445555543 1 2 111111 00 000134678899999999999998876 58999
Q ss_pred EeccCCC--CCceeEEEe-ecCCCcceEEEcCCCCEEEEEeCC--------CeEEEEEcc-CC---ceEEeeeccCcCCC
Q psy6522 373 YKMDGVD--SPLGILEVE-EHSDKVDSIQWSHSHLRFVSGSRD--------GTALIWYYK-CS---QWRFIRLDMNTCLP 437 (1407)
Q Consensus 373 wDl~~~~--~~~~i~~l~-~h~~~V~sIafSpdg~~LaSgs~D--------GtI~IWDl~-t~---~~~~~~l~~~~~~~ 437 (1407)
|++.+.. .......+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ ....+.
T Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-------- 237 (662)
T 3azo_A 166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-------- 237 (662)
T ss_dssp EETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--------
T ss_pred EECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--------
Confidence 9985410 001223344 556678889999999999887755 379999998 46 222211
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEEecCCCC--------eEEEEEecCCCCE
Q psy6522 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNE--------VFVLESHPFDSRV 507 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG--~I~IWDl~tg~~l~~l~gH~~~--------V~sLafsP~dg~~ 507 (1407)
..+...+..++|+|||++++++.. ++ .|.+||+.+++....+.++... +..++|+| ++.+
T Consensus 238 --------~~~~~~~~~~~~spdg~l~~~~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~ 307 (662)
T 3azo_A 238 --------GGPEEAIAQAEWAPDGSLIVATDR-TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLI 307 (662)
T ss_dssp --------EETTBCEEEEEECTTSCEEEEECT-TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCE
T ss_pred --------CCCCceEcceEECCCCeEEEEECC-CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEE
Confidence 123467889999999995555544 77 7888887777765544444332 56788998 8999
Q ss_pred EEEEeCCCcEEEE--ECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEE--EEEeCCC--eEEEEEcCCCcc
Q psy6522 508 LLSAGHDGLIIIW--DILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC--ALTDSYG--HLLVYGLGGFKR 576 (1407)
Q Consensus 508 LaSgs~DG~V~IW--Di~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~L--Asgs~DG--~I~Iwdl~sg~~ 576 (1407)
+++++. +.+.|| |+.++ . +..+. .+...+..+ |++++..+ ++++.+. .|.++++.+++.
T Consensus 308 ~~~~~~-~~~~l~~~d~~~~--~-~~~l~-----~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 308 AVVHGK-GAAVLGILDPESG--E-LVDAA-----GPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEEBS-SSCEEEEEETTTT--E-EEECC-----SSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEc-CccEEEEEECCCC--c-EEEec-----CCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 999998 999999 55544 2 33332 223456555 14455543 3444443 466667767654
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=2.9e-13 Score=156.78 Aligned_cols=276 Identities=10% Similarity=0.008 Sum_probs=189.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|++++ .+++++..++.|.+||..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQG----QLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTS----CEEEEETTTCEEEEECTTTCCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCC----CEEEEECCCCEEEEEeCCCCcE
Confidence 457788999998888877888999999 456677777777788999999865 7777888899999999876532
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd 402 (1407)
..... .+...+.+++++++|.++++...+ +.|.+||..+.. ...+.....+...+.+++++++
T Consensus 79 ~~~~~------------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 79 KRPFV------------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp EEEEE------------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTT
T ss_pred EEEee------------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCC
Confidence 21110 123568999999999988877666 689999984322 1111111123456889999999
Q ss_pred CCEEEEEeC------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy6522 403 HLRFVSGSR------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 476 (1407)
Q Consensus 403 g~~LaSgs~------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~I 476 (1407)
|.++++... .+.|..|+..+++..... .....+..++|+++++.|+++...++.|.+
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-----------------QNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-----------------EEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEEEee-----------------cCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 987776653 355666665544432211 112246789999999988777654789999
Q ss_pred EECCC-CceEEE--------EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeec-CCCCCcee
Q psy6522 477 WDAFN-GDLVQV--------LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVE-GQGEGALF 546 (1407)
Q Consensus 477 WDl~t-g~~l~~--------l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~-g~~~~~I~ 546 (1407)
||+.+ +..+.. +.++ ..+..+++++ +++++++...++.|.+||.. + ..+..+..... ..+...+.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~-g--~~~~~~~~~~~~~g~~~~~~ 283 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS-DDNLYVAMYGQGRVLVFNKR-G--YPIGQILIPGRDEGHMLRST 283 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT-TCCEEEEEETTTEEEEECTT-S--CEEEEEECTTGGGTCSCBCC
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCceEECC-CCCEEEEEcCCCEEEEECCC-C--CEEEEEEcCCCccccccCcc
Confidence 99864 443321 1222 4678899999 88988888888999999984 4 34444431000 00112588
Q ss_pred EEEECCCCCEEEEEeCCC
Q psy6522 547 DGKWSPDGTTCALTDSYG 564 (1407)
Q Consensus 547 slafSpDG~~LAsgs~DG 564 (1407)
+++|++|+..|++++.+|
T Consensus 284 ~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 284 HPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTSCEEEEEEECG
T ss_pred eEEECCCCCEEEEEeCcc
Confidence 999999998887776654
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=2.7e-13 Score=157.01 Aligned_cols=286 Identities=10% Similarity=-0.032 Sum_probs=196.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
..|.+++|++++..++..+.++.+++| .+.....+..+...+.+++|++++++++++..++.|.+||..+++....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346788899998888877888899999 45677778888888999999999998888888999999999988766655
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecC----CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~D----GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~ 360 (1407)
..+...+.+++|++++ .+++++..+ +.|.+||..+....... .. ......+.+++++|+|.+
T Consensus 83 ~~~~~~~~~i~~~~dg----~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~---------~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDG----RLFVCYLGDFKSTGGIFAATENGDNLQDII-ED---------LSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp ECSSSSEEEEEECTTS----CEEEEECTTSSSCCEEEEECTTSCSCEEEE-CS---------SSSCCCEEEEEECTTSCE
T ss_pred eCCCCCcceEEECCCC----cEEEEeCCCCCCCceEEEEeCCCCEEEEEE-cc---------CccCCcccceEECCCCCE
Confidence 4667789999999875 677776666 68999998765322111 00 012356889999999987
Q ss_pred EEEeeC------CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEE-EEeCCCeEEEEEccC-CceEEeeecc
Q psy6522 361 LATGSG------DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV-SGSRDGTALIWYYKC-SQWRFIRLDM 432 (1407)
Q Consensus 361 Lasgs~------DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~La-Sgs~DGtI~IWDl~t-~~~~~~~l~~ 432 (1407)
+++... .+.|..|+..+ .. +..+..+...+..++|++++..|+ +.+.++.|.+||+.+ +........
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~-~~---~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~- 223 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDF-RT---VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA- 223 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTS-CC---EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-
T ss_pred EEEeccccccCCCceEEEEeCCC-CE---EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-
Confidence 776653 24555555421 11 222223344578899999998664 445678999999864 221110000
Q ss_pred CcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCC------CeEEEEEecCCCC
Q psy6522 433 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTN------EVFVLESHPFDSR 506 (1407)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~------~V~sLafsP~dg~ 506 (1407)
........ ...+..++++++|.++++... ++.|.+||. +++.+..+..+.. .+.+++|+| ++.
T Consensus 224 -------~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~-~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~ 292 (333)
T 2dg1_A 224 -------TIPYYFTG-HEGPDSCCIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTN 292 (333)
T ss_dssp -------EEEEECCS-SSEEEEEEEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSC
T ss_pred -------eEEEecCC-CCCCCceEECCCCCEEEEEcC-CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC-CCC
Confidence 00000001 135677999999987776655 789999998 5777777765543 689999998 776
Q ss_pred EEEEEeCCC------cEEEEECC
Q psy6522 507 VLLSAGHDG------LIIIWDIL 523 (1407)
Q Consensus 507 ~LaSgs~DG------~V~IWDi~ 523 (1407)
.|+.++.++ .|...++.
T Consensus 293 ~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 293 QLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEeCccCCCCCceEEEEecc
Confidence 666555543 45555543
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=5.6e-13 Score=154.87 Aligned_cols=258 Identities=9% Similarity=0.024 Sum_probs=174.1
Q ss_pred CCEEEEEEcCCCCEEEEEE---------CCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---C--eE
Q psy6522 205 SAVFCVLFDKLGEVIVTGA---------DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---K--TI 270 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS---------~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D---G--tI 270 (1407)
..|..+++ ||++|+... .++.|.+||+.+++... + ..+.+++|||||++||.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44667777 888877642 25689999999887543 3 568899999999999887754 2 48
Q ss_pred EEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecC---------------------------CceeEEeecc
Q psy6522 271 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---------------------------GCIGFWKYKL 323 (1407)
Q Consensus 271 rVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D---------------------------GtI~vWDl~t 323 (1407)
.+|++.+++.......+ . +.++.|+|++ ..|+.++.+ ..|.+||+.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg----~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDS----RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTS----SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCC----CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 88899887766555443 3 9999999976 777776632 4678888776
Q ss_pred ccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc-------eEEEEeccCCCCCceeEEEeecCCCcce
Q psy6522 324 DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH-------HVRVYKMDGVDSPLGILEVEEHSDKVDS 396 (1407)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG-------~I~IwDl~~~~~~~~i~~l~~h~~~V~s 396 (1407)
+....... . . .+..++|+|+| +++++..++ ...||.++ ... ...+..+ ..+..
T Consensus 162 ~~~~~~l~------------~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~---~~~l~~~-~~~~~ 221 (347)
T 2gop_A 162 EEVIEEFE------------K-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK---EEKMFEK-VSFYA 221 (347)
T ss_dssp TEEEEEEE------------E-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE---EEEEEEE-ESEEE
T ss_pred CeEEeeec------------C-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc---eEEeccC-cceee
Confidence 53211110 0 1 45678999999 777775542 44666664 222 2333344 44444
Q ss_pred EEEcCCCCEEEEEeCC--------CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEE-EEECCCCCEEEEE
Q psy6522 397 IQWSHSHLRFVSGSRD--------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTM-VAWDASDRWVITA 467 (1407)
Q Consensus 397 IafSpdg~~LaSgs~D--------GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vts-lafSpdg~~Lasg 467 (1407)
++|+|++|+.++.+ ..|.+|| +++...+ ...+...+.. ++|+ ++ +++++
T Consensus 222 --~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l----------------~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 222 --VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI----------------LDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp --EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES----------------STTCCSEEEEEEEET-TE-EEEEE
T ss_pred --ECCCCCEEEEEEccccCCccccceEEEEC--CCceEec----------------cccCCcccCCccEEc-Cc-EEEEE
Confidence 49999988877754 3677777 4443221 1123456665 8999 88 77777
Q ss_pred EecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcE-EEEECC
Q psy6522 468 INFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLI-IIWDIL 523 (1407)
Q Consensus 468 s~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V-~IWDi~ 523 (1407)
.. ++.++|| +.+++.. .+..+...|.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~-~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FE-EGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-TTEEEEE-EESSSEE-EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ec-CCcEEEE-EcCCceE-EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 76 9999999 8766654 4445577899999987 678888877765 777775
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.56 E-value=9.2e-13 Score=149.21 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=175.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe------CCCCCeEEEEE-cCCCCEEEEEEC-CCeEEE
Q psy6522 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR------GCSGEISDIAI-DNRNILLAAGTV-DKTIRI 272 (1407)
Q Consensus 201 ~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~------gH~~~ItsLaf-SpDg~lLaSgs~-DGtIrV 272 (1407)
.+|...+.+++++++|+++++.+.++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999999999988888889999999986 66776664 24467899999 577777766643 789999
Q ss_pred EeCCCCceEEEEe-ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 273 WNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 273 WDl~tg~~v~~l~-~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
|+ .+++.+..+. .+...+.+|++.+++ .++++...++.|.+|+.... ...... . ..+...+.+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~~g~-~~~~~~-~---------~~~~~~p~~ 168 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKG----RIIVVECKVMRVIIFDQNGN-VLHKFG-C---------SKHLEFPNG 168 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTS----CEEEEETTTTEEEEECTTSC-EEEEEE-C---------TTTCSSEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCC----CEEEEECCCCEEEEEcCCCC-EEEEeC-C---------CCccCCcEE
Confidence 99 5677776664 344578999999865 77777778899999996432 111110 0 122346789
Q ss_pred EEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec--CCCcceEEEcCCCCEEEEEeCCC-eEEEEEccCCceEEe
Q psy6522 352 SSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGSRDG-TALIWYYKCSQWRFI 428 (1407)
Q Consensus 352 vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h--~~~V~sIafSpdg~~LaSgs~DG-tI~IWDl~t~~~~~~ 428 (1407)
++++++|.++++...++.|.+|+..+ ..+..+..+ ...+..|+++++|.++++...++ .|.+||... +....
T Consensus 169 i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~ 243 (286)
T 1q7f_A 169 VVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISA 243 (286)
T ss_dssp EEECSSSEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEE
Confidence 99999999888888899999999732 223333322 35688999999999888887776 999999653 32221
Q ss_pred eeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy6522 429 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 482 (1407)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg 482 (1407)
... ......+..++++++|+++++ +. ++.|++|++...
T Consensus 244 ~~~--------------~~~~~~~~~i~~~~~g~l~vs-~~-~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LES--------------KVKHAQCFDVALMDDGSVVLA-SK-DYRLYIYRYVQL 281 (286)
T ss_dssp EEE--------------SSCCSCEEEEEEETTTEEEEE-ET-TTEEEEEECSCC
T ss_pred Ecc--------------cCCCCcceeEEECCCCcEEEE-CC-CCeEEEEEcccc
Confidence 110 011234678999999976555 55 899999998654
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.55 E-value=1.9e-12 Score=146.67 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=173.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe------ccCCceEEEEec-cCCCCCceEEEEEec-CCc
Q psy6522 244 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV------GHQGIITGVNFC-PLEVNGFNYLASTST-DGC 315 (1407)
Q Consensus 244 gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~------~H~~~VtsLafs-pd~~~~~~~LaSgs~-DGt 315 (1407)
++-..+.+|++++++.++++...++.|.+||.. ++.+..+. +|...+.++++. +++ .++++... ++.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g----~l~v~~~~~~~~ 101 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG----DIIVTERSPTHQ 101 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT----EEEEEECGGGCE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC----eEEEEcCCCCCE
Confidence 455678999999999998888889999999987 66666654 234578899994 543 56665543 889
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe--ecCCC
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--EHSDK 393 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~--~h~~~ 393 (1407)
|.+|+. .+....... ..+...+.+++++++|.++++...++.|.+|+..+ ..+..+. .+...
T Consensus 102 i~~~d~-~g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 102 IQIYNQ-YGQFVRKFG-----------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEF 165 (286)
T ss_dssp EEEECT-TSCEEEEEC-----------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSS
T ss_pred EEEECC-CCcEEEEec-----------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCC
Confidence 999994 332221110 01225678999999999888877889999999632 2222332 34456
Q ss_pred cceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC-
Q psy6522 394 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF- 472 (1407)
Q Consensus 394 V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG- 472 (1407)
+.+|+++++|.++++...++.|++||..... ..... .......+..++++++|.++++... ++
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~--------------~~g~~~~p~~i~~d~~G~l~v~~~~-~~~ 229 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQIG--------------GEGITNYPIGVGINSNGEILIADNH-NNF 229 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEEES--------------CTTTSCSEEEEEECTTCCEEEEECS-SSC
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEEEc--------------cCCccCCCcEEEECCCCCEEEEeCC-CCE
Confidence 8899999999988887889999999975432 21110 0112245788999999987777665 65
Q ss_pred eEEEEECCCCceEEEEecCCC--CeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 473 QIKIWDAFNGDLVQVLKGHTN--EVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 473 ~I~IWDl~tg~~l~~l~gH~~--~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.|.+||. +++.+..+..+.. .+.+++++| +++++++ +.|+.|++|++...
T Consensus 230 ~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 230 NLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEECC-CCCEEEEEcccCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 9999995 6777777766543 478999999 8887777 67999999998654
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=1.6e-11 Score=138.60 Aligned_cols=283 Identities=7% Similarity=-0.035 Sum_probs=196.5
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q psy6522 200 NLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg 278 (1407)
+..+...+.+++++++|+++++...++.|.+||.. +...... ..+...+.+|+++++|.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999988776668899999988 6544322 2355789999999999988887778899999986 3
Q ss_pred ceEEEEe--ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC
Q psy6522 279 APISVLV--GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 279 ~~v~~l~--~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
+. ..+. .....+.++++.+++ .++++...++.|..||. ++... .... ......+.++++.+
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~d~-~g~~~-~~~~----------~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGPNG----DIWFTEMNGNRIGRITD-DGKIR-EYEL----------PNKGSYPSFITLGS 150 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECTTS----CEEEEETTTTEEEEECT-TCCEE-EEEC----------SSTTCCEEEEEECT
T ss_pred cE-EEEeCCCcCCCceeeEECCCC----CEEEEecCCceEEEECC-CCCEE-EecC----------CCCCCCCceEEEcC
Confidence 32 2232 245578999998865 67777777888999987 33211 1100 11235678999999
Q ss_pred CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCC
Q psy6522 357 GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL 436 (1407)
Q Consensus 357 dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~ 436 (1407)
+|.++++...++.|.+|+. .. ... ...+..+...+.++++++++.++++...++.|.+||. ++.......
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g-~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~------ 220 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SG-DIT-EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKI------ 220 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TC-CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC------
T ss_pred CCCEEEEeCCCCEEEEEcC-CC-cEE-EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEEC------
Confidence 9988877777788999987 22 111 1122334456789999999987777767889999998 665332111
Q ss_pred CCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEecCCCCEEEEEeCCC
Q psy6522 437 PHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDG 515 (1407)
Q Consensus 437 ~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~-l~gH~~~V~sLafsP~dg~~LaSgs~DG 515 (1407)
......+..++++++|...++... ++.|.+||. ++..... +..+...+.++++ + ++.++++.. .+
T Consensus 221 ---------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~ 286 (299)
T 2z2n_A 221 ---------PTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAME-CD 286 (299)
T ss_dssp ---------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEET-TT
T ss_pred ---------CCCCCCceeEEECCCCCEEEeccC-CceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEec-CC
Confidence 113346789999999885554434 789999998 5543322 2345567899999 7 888777655 56
Q ss_pred cEEEEECCCC
Q psy6522 516 LIIIWDILSS 525 (1407)
Q Consensus 516 ~V~IWDi~sg 525 (1407)
.|..++..++
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 7777777654
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=1.7e-12 Score=150.72 Aligned_cols=259 Identities=14% Similarity=0.073 Sum_probs=172.1
Q ss_pred CCeEEEEEcCCCCEEEEEE---------CCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecC---C
Q psy6522 247 GEISDIAIDNRNILLAAGT---------VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---G 314 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs---------~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D---G 314 (1407)
..+..++| ||+.|+... .++.|.+|++.+++... + ..+..+.|+|++ ..|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg----~~la~~~~~~~~~ 83 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDG----KKIAFMRANEEKK 83 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTS----SEEEEEEEETTTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCC----CEEEEEEeccCCC
Confidence 34667777 888877642 25689999999877543 3 467899999987 777777654 3
Q ss_pred c--eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC--------------------------
Q psy6522 315 C--IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-------------------------- 366 (1407)
Q Consensus 315 t--I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-------------------------- 366 (1407)
. |.+|++.++....... +.. +.+++|+|+|+.|+.++.
T Consensus 84 ~~~l~~~~~~~g~~~~l~~-------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILE-------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEEETTTTEEEEEEE-------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------
T ss_pred cceEEEEECCCCceEEEEc-------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 4 6666666542211110 113 789999999998888764
Q ss_pred -CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC-------eEEEEEccCCceEEeeeccCcCCCC
Q psy6522 367 -DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-------TALIWYYKCSQWRFIRLDMNTCLPH 438 (1407)
Q Consensus 367 -DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG-------tI~IWDl~t~~~~~~~l~~~~~~~~ 438 (1407)
...|.+|++.+. ..+..+.. . .+..++|+|+| +++++..++ ...||.+.+++...+.
T Consensus 150 ~~~~l~~~d~~~~---~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~--------- 214 (347)
T 2gop_A 150 EKTTFWIFDTESE---EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF--------- 214 (347)
T ss_dssp CEEEEEEEETTTT---EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE---------
T ss_pred ccceEEEEECCCC---eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec---------
Confidence 257888998432 22123333 3 78899999999 777776542 4455544444432211
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecC-------CeEEEEECCCCceEEEEecCCCCeEE-EEEecCCCCEEEE
Q psy6522 439 TKETSDETNKKIKVTMVAWDASDRWVITAINFN-------FQIKIWDAFNGDLVQVLKGHTNEVFV-LESHPFDSRVLLS 510 (1407)
Q Consensus 439 ~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D-------G~I~IWDl~tg~~l~~l~gH~~~V~s-LafsP~dg~~LaS 510 (1407)
.+ ..+..+ +|||++|++++..+ ..|.+|| +++....+.+|...+.. +.|+ ++ ++++
T Consensus 215 --------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~ 278 (347)
T 2gop_A 215 --------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFT 278 (347)
T ss_dssp --------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEE
T ss_pred --------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEE
Confidence 01 233333 89999998887522 4788888 66665555566778886 8887 66 9999
Q ss_pred EeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeE-EEEEcC
Q psy6522 511 AGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHL-LVYGLG 572 (1407)
Q Consensus 511 gs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I-~Iwdl~ 572 (1407)
++.++.++|| +.++ ... .+. .+.+.|.+++|+| .++++++.++.. .||.+.
T Consensus 279 ~~~~~~~~l~-~~~g--~~~-~~~-----~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 279 LFEEGSVNLY-IWDG--EIK-PIA-----KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEETTEEEEE-EESS--SEE-EEE-----CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EecCCcEEEE-EcCC--ceE-EEe-----cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9999999999 8754 322 221 1356789999999 677777777654 677665
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.54 E-value=7.2e-12 Score=157.22 Aligned_cols=321 Identities=15% Similarity=0.091 Sum_probs=217.5
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec--cccccceeeec
Q psy6522 256 NRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK--LDIDISKTVFH 333 (1407)
Q Consensus 256 pDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~--t~~~~~~~~~~ 333 (1407)
+.+.++++...++.|.|+|..+++.+..+.... .+..+.|+|++ ++|++++.|+.|.+||+. +.+......
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDG----r~lyv~~~dg~V~viD~~~~t~~~v~~i~-- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASG----RYLFVIGRDGKVNMIDLWMKEPTTVAEIK-- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTS----CEEEEEETTSEEEEEETTSSSCCEEEEEE--
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCC----CEEEEEcCCCeEEEEECCCCCCcEeEEEe--
Confidence 445567777788999999999999998886433 56799999987 899999999999999985 442222111
Q ss_pred cccccccccCCCCcceEEEEEC----CCCceEEEeeC-CceEEEEeccCCCCCceeEEEe--e--------cCC-CcceE
Q psy6522 334 EPVMFNERIRPGNAHILCSSFS----PGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE--E--------HSD-KVDSI 397 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafS----pdg~~Lasgs~-DG~I~IwDl~~~~~~~~i~~l~--~--------h~~-~V~sI 397 (1407)
.+ .....++|+ |+|+++++++. ++.|.|+|..+ ...+..+. + |.. .+..+
T Consensus 238 ----------~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 238 ----------IG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp ----------CC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred ----------cC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEE
Confidence 11 345789999 69998887755 58999999743 22232222 1 222 56788
Q ss_pred EEcCCCCEEE-EEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy6522 398 QWSHSHLRFV-SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 476 (1407)
Q Consensus 398 afSpdg~~La-Sgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~I 476 (1407)
.+++++..++ +...+|.|.++|+.......... .........+.|+|++++++++...++.|.+
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~---------------i~~~~~~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE---------------ISAERFLHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE---------------EECCSSEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCccceeee---------------eeccccccCceECCCCCEEEEEeCCCCeEEE
Confidence 8888876544 44567999999987654222110 0122345578899999999998876899999
Q ss_pred EECCCCceEEEEec-----CCCCeEEEEEecCC-CCEEEEEe-CCCcEEEEECCCCC-----ccceeeeeeeecCCCCCc
Q psy6522 477 WDAFNGDLVQVLKG-----HTNEVFVLESHPFD-SRVLLSAG-HDGLIIIWDILSSK-----QRGYKWFHNIVEGQGEGA 544 (1407)
Q Consensus 477 WDl~tg~~l~~l~g-----H~~~V~sLafsP~d-g~~LaSgs-~DG~V~IWDi~sgk-----~~~l~~~~~~~~g~~~~~ 544 (1407)
+|+.+++++..+.. |.+.-..+ ++| + +.+++++. .++.|.++|..+.+ .+.+..+. ..+ ..
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p-~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~----~~g-~g 441 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHP-TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP----ALG-GG 441 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EET-TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE----CSC-SC
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECC-CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe----cCC-CC
Confidence 99999998877654 43222222 577 5 44445543 46899999998742 13333333 222 22
Q ss_pred eeEEEECCCCCEEEEEeC-------CCeEEEEEcCCC-----c-ccccc--------------CCceEecCCCcEEEec-
Q psy6522 545 LFDGKWSPDGTTCALTDS-------YGHLLVYGLGGF-----K-RPQNI--------------PRELFFHTDYRTLNRP- 596 (1407)
Q Consensus 545 I~slafSpDG~~LAsgs~-------DG~I~Iwdl~sg-----~-~~~~l--------------p~~v~Fs~D~~~Lv~~- 596 (1407)
-..++++||+++|.+... .+.|.+||+.+. . .+..+ +.++.|.+||+.+...
T Consensus 442 ~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~ 521 (567)
T 1qks_A 442 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSV 521 (567)
T ss_dssp CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEe
Confidence 344778999999998773 359999999877 2 11222 2367899999877633
Q ss_pred -----CCCeeeEeeCCCCCCCCcCCCCc
Q psy6522 597 -----NGLFEPTYDEVTNLPPHLMPPPF 619 (1407)
Q Consensus 597 -----~~~~~~v~Dv~T~~~~~~~p~pf 619 (1407)
..+-+.|+|..|.+....++++.
T Consensus 522 ~~~~~~~~~i~v~D~~t~~~~~~i~~~~ 549 (567)
T 1qks_A 522 WNGKDQESALVVVDDKTLELKHVIKDER 549 (567)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred ecCCCCCCcEEEEECCCceEEEEeCCCc
Confidence 24566789999886665555543
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=7.6e-13 Score=154.25 Aligned_cols=252 Identities=10% Similarity=0.020 Sum_probs=175.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECC------------------------CeEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCC
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADD------------------------LLIKLWRARDGKLLATLR-GCSGEISDIAIDNRN 258 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~D------------------------G~V~IWDl~tg~~l~tl~-gH~~~ItsLafSpDg 258 (1407)
.+.|.+|+++|+|+++++...+ +.|.+||..+++.+..+. ++-.....|+++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999999999887765 455688999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCc-eEEEE---------eccCCceEEEEecc-CCCCCceEEEEEe-cCCceeEEeeccccc
Q psy6522 259 ILLAAGTVDKTIRIWNLQTLA-PISVL---------VGHQGIITGVNFCP-LEVNGFNYLASTS-TDGCIGFWKYKLDID 326 (1407)
Q Consensus 259 ~lLaSgs~DGtIrVWDl~tg~-~v~~l---------~~H~~~VtsLafsp-d~~~~~~~LaSgs-~DGtI~vWDl~t~~~ 326 (1407)
+++++...++.|++|+..... .+..+ ..+.....+|+|+| ++ .++++.+ .++.|.+|+.. +..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g----~lyv~d~~~~~~I~~~~~~-g~~ 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG----AVFVSDGYCNSRIVQFSPS-GKF 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC----CEEEEECSSCCEEEEECTT-SCE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC----eEEEEeCCCCCeEEEEcCC-CCE
Confidence 999988889999999986542 55555 23445689999998 44 7777776 68999999943 322
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCC-CceEEEeeCCceEEEEeccCCCCCceeEEE--eecCCCcceEEEcCCC
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEV--EEHSDKVDSIQWSHSH 403 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l--~~h~~~V~sIafSpdg 403 (1407)
.......... ......+......++++|+ +.++++...++.|++|+..+ ...+..+ ..+...+.+++|+| +
T Consensus 178 ~~~~~~~g~~--~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~---G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 178 VTQWGEESSG--SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT---KEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp EEEECEECCS--SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT---CCEEEEECCTTTTTCEEEEEEET-T
T ss_pred EEEeccCCCC--CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC---CcEEEEEeccccCCCcceeeecC-C
Confidence 2211110000 0000011234789999998 77788888899999999842 2223333 34556788899999 4
Q ss_pred CEEEE-------EeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEE
Q psy6522 404 LRFVS-------GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKI 476 (1407)
Q Consensus 404 ~~LaS-------gs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~I 476 (1407)
..+++ ...+..|++|++.+++....... ...+...+..++++++|..+++... ++.|++
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-------------~~~~~~~p~~ia~~~dG~lyvad~~-~~~I~~ 317 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-------------VRKHFDMPHDIVASEDGTVYIGDAH-TNTVWK 317 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC-------------SSSCCSSEEEEEECTTSEEEEEESS-SCCEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC-------------CCCccCCeeEEEECCCCCEEEEECC-CCEEEE
Confidence 33333 33445899999998876543210 1124456789999999955444444 899999
Q ss_pred EECC
Q psy6522 477 WDAF 480 (1407)
Q Consensus 477 WDl~ 480 (1407)
|++.
T Consensus 318 ~~~~ 321 (329)
T 3fvz_A 318 FTLT 321 (329)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 9964
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=2.5e-12 Score=146.73 Aligned_cols=247 Identities=11% Similarity=0.039 Sum_probs=170.7
Q ss_pred EEcCCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q psy6522 199 VNLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~-~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t 277 (1407)
.+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+|+|+++|+++++...++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3445667788999999998 7888888999999999887 667777888899999999999888877778999999988
Q ss_pred CceEEEEecc----CCceEEEEeccCCCCCceEEEEEecCC---------------ceeEEeeccccccceeeecccccc
Q psy6522 278 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTSTDG---------------CIGFWKYKLDIDISKTVFHEPVMF 338 (1407)
Q Consensus 278 g~~v~~l~~H----~~~VtsLafspd~~~~~~~LaSgs~DG---------------tI~vWDl~t~~~~~~~~~~~~~~~ 338 (1407)
++........ ...+..+++.|++ .++++.+..| .-.+|.+.........
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-------- 167 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP-------- 167 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE--------
T ss_pred CcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe--------
Confidence 8765443322 1346789999876 7777632111 1244444332111111
Q ss_pred ccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC-ceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEE
Q psy6522 339 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI 417 (1407)
Q Consensus 339 ~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~-~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~I 417 (1407)
..+......++|+|+++.|++.+.++.|.+|++...... .....+..+...+.+|+++++|.++++. ++.|.+
T Consensus 168 ----~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp ----ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEE
T ss_pred ----ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEE
Confidence 122345688999999998877777899999999522222 1112223355667899999999866665 889999
Q ss_pred EEccCCceEEeeeccCcCCCCCccccccccccccEEEEEE-CCCCCEEEEEEecCCeEEEEECCCCceE
Q psy6522 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAINFNFQIKIWDAFNGDLV 485 (1407)
Q Consensus 418 WDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf-Spdg~~Lasgs~~DG~I~IWDl~tg~~l 485 (1407)
|+.. ++..... ..... +.+++| +++++.|++++. +.|..++..+..+.
T Consensus 242 ~~~~-g~~~~~~----------------~~~~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 242 LTPD-GDELGRV----------------LTPQT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNVRGLE 290 (296)
T ss_dssp ECTT-SCEEEEE----------------ECSSC-CCEEEEESTTSCEEEEEET--TEEEEEECSCCBCC
T ss_pred ECCC-CCEEEEE----------------ECCCC-ceeEEEECCCCCEEEEEcC--CeEEEEEccccccc
Confidence 9986 4322211 11222 778888 689999988875 45666777666543
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.6e-12 Score=164.36 Aligned_cols=251 Identities=9% Similarity=0.089 Sum_probs=173.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc----
Q psy6522 245 CSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC---- 315 (1407)
Q Consensus 245 H~~~ItsLafSpDg~lLaSgs~DG-----tIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt---- 315 (1407)
|...+..++|||||++||.++.++ .|+|||+.+++.+.....+. .+.+++|+|++ +.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg----~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDG----KGMFYNAYPQQDGKS 197 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTS----SEEEEEECCCCSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCC----CEEEEEEECCccccc
Confidence 445688999999999998776543 89999999998776433322 36789999987 88888887766
Q ss_pred ------------eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC-----CceEEEEeccCC
Q psy6522 316 ------------IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-----DHHVRVYKMDGV 378 (1407)
Q Consensus 316 ------------I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-----DG~I~IwDl~~~ 378 (1407)
|.+|++.++......... ...+...+..+.|+|+|++|+.++. +..|.+||+.+.
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~--------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~ 269 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAE--------FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE 269 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEEC--------CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEec--------cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccc
Confidence 889998766322111111 1123345788999999999888764 568999998541
Q ss_pred C----CCceeEEEeecCCCcceEEEcCCCCEEEEEeCC----CeEEEEEccCCc---eEEeeeccCcCCCCCcccccccc
Q psy6522 379 D----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD----GTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETN 447 (1407)
Q Consensus 379 ~----~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D----GtI~IWDl~t~~---~~~~~l~~~~~~~~~~~~~~~~~ 447 (1407)
. .......+..+...+.. .|+++|..|+..+.. +.|.+||+.++. +..+.. ..
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~---------------~~ 333 (710)
T 2xdw_A 270 SNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP---------------EH 333 (710)
T ss_dssp SSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---------------CC
T ss_pred ccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC---------------CC
Confidence 0 11123445556665554 488999887766653 369999987653 121110 01
Q ss_pred ccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEE-EEe---CCCcEEEEE
Q psy6522 448 KKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLL-SAG---HDGLIIIWD 521 (1407)
Q Consensus 448 ~~~~VtslafSpdg~~Lasgs~~DG--~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~La-Sgs---~DG~V~IWD 521 (1407)
....+..++|++++.++++... ++ .|.+|++.+++.+..+..+.+.|..++++| ++..|+ +.+ ..++|++||
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~-~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEE
T ss_pred CCCeEEEEEEEcCCEEEEEEEE-CCEEEEEEEECCCCCEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEE
Confidence 1135777889877766666666 77 467778878888888888888899999999 666554 333 357899999
Q ss_pred CCCCC
Q psy6522 522 ILSSK 526 (1407)
Q Consensus 522 i~sgk 526 (1407)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98873
No 185
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=2.8e-12 Score=149.43 Aligned_cols=253 Identities=11% Similarity=0.057 Sum_probs=180.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CeEEEEeCCCCceEEEEe-ccCCceEEEEeccCC
Q psy6522 246 SGEISDIAIDNRNILLAAGTVD------------------------KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLE 300 (1407)
Q Consensus 246 ~~~ItsLafSpDg~lLaSgs~D------------------------GtIrVWDl~tg~~v~~l~-~H~~~VtsLafspd~ 300 (1407)
-+.|.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......|++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888777 479999999998877664 344578999999876
Q ss_pred CCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEee-CCceEEEEeccCC
Q psy6522 301 VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGS-GDHHVRVYKMDGV 378 (1407)
Q Consensus 301 ~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs-~DG~I~IwDl~~~ 378 (1407)
.++++...++.|.+|+.............. . .......+......++++| ++.++++.+ .++.|++|+..+
T Consensus 103 ----~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~-~-~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g- 175 (329)
T 3fvz_A 103 ----NYWVTDVALHQVFKLDPHSKEGPLLILGRS-M-QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG- 175 (329)
T ss_dssp ----CEEEEETTTTEEEEECTTCSSCCSEEESBT-T-BCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-
T ss_pred ----CEEEEECCCCEEEEEeCCCCeEEEEEeccc-C-CCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-
Confidence 788888889999999976542111111100 0 0000012334688999999 788888876 689999999632
Q ss_pred CCCceeEEEee----------cCCCcceEEEcCC-CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccccccc
Q psy6522 379 DSPLGILEVEE----------HSDKVDSIQWSHS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETN 447 (1407)
Q Consensus 379 ~~~~~i~~l~~----------h~~~V~sIafSpd-g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~ 447 (1407)
..+..+.. +-.....|+++++ +.++++...++.|++|+..+++...... ...
T Consensus 176 ---~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--------------~~~ 238 (329)
T 3fvz_A 176 ---KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK--------------HAS 238 (329)
T ss_dssp ---CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC--------------CTT
T ss_pred ---CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe--------------ccc
Confidence 22233321 2234789999998 7777777889999999998777554321 012
Q ss_pred ccccEEEEEECCCCCEEEEEEe------cCCeEEEEECCCCceEEEEe---cCCCCeEEEEEecCCCCEEEEEeCCCcEE
Q psy6522 448 KKIKVTMVAWDASDRWVITAIN------FNFQIKIWDAFNGDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLII 518 (1407)
Q Consensus 448 ~~~~VtslafSpdg~~Lasgs~------~DG~I~IWDl~tg~~l~~l~---gH~~~V~sLafsP~dg~~LaSgs~DG~V~ 518 (1407)
....+..++|+| +..+++.+. .+..|++||..+++.+..+. ++...+..|+++| ++.++++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEE
Confidence 345677888888 333322221 14589999999999999884 6777899999999 888889989999999
Q ss_pred EEECCC
Q psy6522 519 IWDILS 524 (1407)
Q Consensus 519 IWDi~s 524 (1407)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999864
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=6.8e-11 Score=133.43 Aligned_cols=285 Identities=7% Similarity=-0.025 Sum_probs=195.3
Q ss_pred eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE-eccCCceEEEEeccCCCCCceEEEEEecCCceeEEee
Q psy6522 243 RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL-VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321 (1407)
Q Consensus 243 ~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l-~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl 321 (1407)
..+...+.+|+++++|.++++...++.|.+||.. +...... ..+...+.++++.+++ .++++...++.|..|+.
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG----EVWFTENAANKIGRITK 85 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS----CEEEEETTTTEEEEECT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC----CEEEeCCCCCeEEEECC
Confidence 3455789999999999988877668899999988 5543322 2345678999999865 67777666888999987
Q ss_pred ccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcC
Q psy6522 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSH 401 (1407)
Q Consensus 322 ~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSp 401 (1407)
... ...... ......+.++++.++|.++++...++.|.+|+.. . . ........+...+.++++++
T Consensus 86 ~g~--~~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~-~~~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 86 KGI--IKEYTL----------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-K-IREYELPNKGSYPSFITLGS 150 (299)
T ss_dssp TSC--EEEEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-C-EEEEECSSTTCCEEEEEECT
T ss_pred CCc--EEEEeC----------CCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-C-EEEecCCCCCCCCceEEEcC
Confidence 521 111110 1123568899999999888877778899999872 2 1 11122223445688999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy6522 402 SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 481 (1407)
Q Consensus 402 dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t 481 (1407)
++.++++...++.|.+||. ++....... ......+..++++++|.+.++... ++.|.+||. +
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~ 212 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGDITEFKI---------------PTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S 212 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T
T ss_pred CCCEEEEeCCCCEEEEEcC-CCcEEEeeC---------------CCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C
Confidence 9988777777889999998 665433211 012345778999999886555544 789999999 7
Q ss_pred CceEEE-EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEE
Q psy6522 482 GDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 560 (1407)
Q Consensus 482 g~~l~~-l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsg 560 (1407)
++.... +..+...+.++++.+ ++.++++...++.|.+||. ++ . +..+. . ..+...+.++++ ++|.++++.
T Consensus 213 g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g--~-~~~~~--~-~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 213 GEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS-NN--I-IEEYP--I-QIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET-TT--E-EEEEE--C-SSSSCCEEEEEE-CSSCEEEEE
T ss_pred CcEEEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC-CC--c-eEEEe--C-CCCCCccceEEe-cCCCEEEEe
Confidence 765432 233556789999999 8887777667899999998 34 2 22221 1 123457899999 888876665
Q ss_pred eCCCeEEEEEcCCCc
Q psy6522 561 DSYGHLLVYGLGGFK 575 (1407)
Q Consensus 561 s~DG~I~Iwdl~sg~ 575 (1407)
. .+.|..++..+++
T Consensus 284 ~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 E-CDKIGKLTLIKDN 297 (299)
T ss_dssp T-TTEEEEEEEC---
T ss_pred c-CCcEEEEEcCccc
Confidence 5 5788888876653
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.47 E-value=7.2e-12 Score=161.57 Aligned_cols=246 Identities=11% Similarity=0.032 Sum_probs=167.1
Q ss_pred cCCceEEEEeccCCCCCceEEEEEecCC-----ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceE
Q psy6522 287 HQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFL 361 (1407)
Q Consensus 287 H~~~VtsLafspd~~~~~~~LaSgs~DG-----tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~L 361 (1407)
|...+.+++|+|++ ++|+.++.++ .|++||+.++......... ..+..++|+|||+.|
T Consensus 123 ~~~~~~~~~~SPDg----~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------------~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 123 GTVALRGYAFSEDG----EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------------VKFSCMAWTHDGKGM 185 (710)
T ss_dssp SCEEEEEEEECTTS----SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------------ECSCCEEECTTSSEE
T ss_pred CCEEEEEEEECCCC----CEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------------cccceEEEEeCCCEE
Confidence 43468899999987 7777665543 8999999887443221111 225678999999999
Q ss_pred EEeeCCce----------------EEEEeccCCCCC-ceeEEEeecCCCcceEEEcCCCCEEEEEeC-----CCeEEEEE
Q psy6522 362 ATGSGDHH----------------VRVYKMDGVDSP-LGILEVEEHSDKVDSIQWSHSHLRFVSGSR-----DGTALIWY 419 (1407)
Q Consensus 362 asgs~DG~----------------I~IwDl~~~~~~-~~i~~l~~h~~~V~sIafSpdg~~LaSgs~-----DGtI~IWD 419 (1407)
+.++.++. |++|++.+.... ..+.....|...+..+.|+|+|++|+.++. +..|++||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 99887765 999999432211 122222234556789999999999887764 56899999
Q ss_pred ccC------Cc--eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC---CeEEEEECCCCc--eEE
Q psy6522 420 YKC------SQ--WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN---FQIKIWDAFNGD--LVQ 486 (1407)
Q Consensus 420 l~t------~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D---G~I~IWDl~tg~--~l~ 486 (1407)
+.+ +. ...+. .+...+.. .|+++|..|++.+..+ +.|.+||+.++. ...
T Consensus 266 ~~~~~~~~~~~~~~~~l~-----------------~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 327 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLI-----------------DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK 327 (710)
T ss_dssp GGGSSSSSCSSCCCEEEE-----------------CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred CcccccccCCccceEEee-----------------CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce
Confidence 876 32 22111 11122222 4788999888877633 379999998874 234
Q ss_pred EEecCCC--CeEEEEEecCCCCEEEEEeCCCc--EEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeC
Q psy6522 487 VLKGHTN--EVFVLESHPFDSRVLLSAGHDGL--IIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 562 (1407)
Q Consensus 487 ~l~gH~~--~V~sLafsP~dg~~LaSgs~DG~--V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~ 562 (1407)
.+..|.. .+..++|++ ++.++++...|+. |.+|++.++ ..+..+. . +.+.+..++++|++..|++...
T Consensus 328 ~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g--~~~~~l~----~-~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 328 VLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATG--ALLKIFP----L-EVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp EEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTC--CEEEEEC----C-CSSEEEEEECCTTCSEEEEEEE
T ss_pred eccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCC--CEEEecC----C-CCceEEEEecCCCCCEEEEEEe
Confidence 5555544 688899987 7788889988884 566777666 4344333 2 2567888999999987765533
Q ss_pred ----CCeEEEEEcCCCc
Q psy6522 563 ----YGHLLVYGLGGFK 575 (1407)
Q Consensus 563 ----DG~I~Iwdl~sg~ 575 (1407)
.+.|++||+.+++
T Consensus 400 s~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 400 SFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSSCCCEEEEEETTSSS
T ss_pred CCCCCCEEEEEECCCCc
Confidence 4789999999877
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.45 E-value=1.8e-11 Score=139.53 Aligned_cols=250 Identities=12% Similarity=-0.052 Sum_probs=175.1
Q ss_pred CcEEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCC
Q psy6522 236 GKLLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG 314 (1407)
Q Consensus 236 g~~l~tl~gH~~~ItsLafSpDg~-lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DG 314 (1407)
+..+..+..+.....+++|+|+++ +++++..++.|.+|+..++ ...+..+...+.+++|++++ .++++...++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg----~l~v~~~~~~ 90 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG----HLIACSHGLR 90 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC----CEEEEETTTT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC----cEEEEecCCC
Confidence 344556666677789999999998 7888888999999999887 66677777889999999976 7777776778
Q ss_pred ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE----ee-------------CCceEEEEeccC
Q psy6522 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT----GS-------------GDHHVRVYKMDG 377 (1407)
Q Consensus 315 tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las----gs-------------~DG~I~IwDl~~ 377 (1407)
.|.+||..++.......... ......+..++++|+|.++++ |+ ..+.|..++..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEEECSTTCCEEEEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred eEEEEcCCCCcEEEEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 99999986663221110000 001134677999999998887 33 12344444432
Q ss_pred CCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEcc-CCce-EEeeeccCcCCCCCccccccccccccEEEE
Q psy6522 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK-CSQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMV 455 (1407)
Q Consensus 378 ~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~-t~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~Vtsl 455 (1407)
. .+..+..+......++|+|+++.|++.+.++.|.+|++. .+.. .....- ......+..+
T Consensus 162 -g---~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--------------~~~~~~p~~i 223 (296)
T 3e5z_A 162 -G---TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--------------TVEPGKTDGL 223 (296)
T ss_dssp -S---CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--------------CCSSSCCCSE
T ss_pred -C---CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--------------eCCCCCCCeE
Confidence 1 233344556677899999999988777788999999987 4443 111100 0022334568
Q ss_pred EECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEe-cCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 456 AWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 456 afSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafs-P~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
+++++|+++++. ++.|.+||.. ++.+..+..+.. +.+++|. | +++.|++++.+ .|..++..+.
T Consensus 224 ~~d~~G~l~v~~---~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 224 RVDAGGLIWASA---GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEBTTSCEEEEE---TTEEEEECTT-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETT-EEEEEECSCC
T ss_pred EECCCCCEEEEc---CCeEEEECCC-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCC-eEEEEEcccc
Confidence 999999866555 6789999985 888888888877 9999995 6 88888888776 4555566554
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=3.2e-12 Score=164.49 Aligned_cols=276 Identities=9% Similarity=-0.023 Sum_probs=177.4
Q ss_pred CCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe------CCCCCeEEEEEcCCCCEEEEE-----ECCCeEEEEeCCC
Q psy6522 214 KLGEVIVTGADDL-----LIKLWRARDGKLLATLR------GCSGEISDIAIDNRNILLAAG-----TVDKTIRIWNLQT 277 (1407)
Q Consensus 214 pdG~~LaTGS~DG-----~V~IWDl~tg~~l~tl~------gH~~~ItsLafSpDg~lLaSg-----s~DGtIrVWDl~t 277 (1407)
|+|++++....++ .|.+.+...+.....+. +|...+..++|||||++||.+ +.+..|+|||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6777776655433 23444444444333332 455579999999999999843 3456899999999
Q ss_pred CceEEEEeccCCce--EEEEeccCCCCCceEEEEEecCCc-------------eeEEeeccccccceeeecccccccccc
Q psy6522 278 LAPISVLVGHQGII--TGVNFCPLEVNGFNYLASTSTDGC-------------IGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 278 g~~v~~l~~H~~~V--tsLafspd~~~~~~~LaSgs~DGt-------------I~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
++.+. ..+...+ ..++|+|++ ..|+.++.|.. |.+|++.++......... .
T Consensus 157 g~~~~--~~~~~~~~~~~~~wspDg----~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~--------~ 222 (695)
T 2bkl_A 157 GEWSK--VDVIEGGKYATPKWTPDS----KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE--------R 222 (695)
T ss_dssp CCBCS--SCCBSCCTTCCCEECTTS----SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC--------C
T ss_pred CCCcC--CcccCcccccceEEecCC----CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe--------c
Confidence 88641 1122222 689999987 88888888776 999998876422122111 1
Q ss_pred CCCCcceEEEEECCCCceEEEeeCCc----eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe---CCCeE
Q psy6522 343 RPGNAHILCSSFSPGGLFLATGSGDH----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS---RDGTA 415 (1407)
Q Consensus 343 ~~h~~~I~~vafSpdg~~Lasgs~DG----~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs---~DGtI 415 (1407)
..+...+.++.|+|+|++|++++.++ .|.+|+..+ . ....+..+...+....+ ++|.+++++. .++.|
T Consensus 223 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~---~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l 297 (695)
T 2bkl_A 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K---DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRV 297 (695)
T ss_dssp CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S---SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEE
T ss_pred CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C---ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEE
Confidence 12335678999999999998887665 566665421 1 23344556666666666 5666444443 25889
Q ss_pred EEEEccCCc---eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEEEecC
Q psy6522 416 LIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQVLKGH 491 (1407)
Q Consensus 416 ~IWDl~t~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~-tg~~l~~l~gH 491 (1407)
.+||+.++. +..+.. ......+..++|+ ++.++++... |+..+||.+. +++.+..+..+
T Consensus 298 ~~~d~~~~~~~~~~~l~~---------------~~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 298 FEVDPAKPARASWKEIVP---------------EDSSASLLSVSIV-GGHLSLEYLK-DATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp EEEBTTBCSGGGCEEEEC---------------CCSSCEEEEEEEE-TTEEEEEEEE-TTEEEEEEEETTCCEEEECCCS
T ss_pred EEEeCCCCCccCCeEEec---------------CCCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCeeEEecCC
Confidence 999987654 122110 0113456778887 5666666665 8888877654 46667777665
Q ss_pred -CCCeEEEEEecCCCCEEE-EEe---CCCcEEEEECCCCC
Q psy6522 492 -TNEVFVLESHPFDSRVLL-SAG---HDGLIIIWDILSSK 526 (1407)
Q Consensus 492 -~~~V~sLafsP~dg~~La-Sgs---~DG~V~IWDi~sgk 526 (1407)
.+.|..++++| ++..|+ +.+ ..++|++||+.+++
T Consensus 361 ~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 GVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 66788888999 776555 332 35789999998874
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.43 E-value=3.4e-11 Score=140.48 Aligned_cols=272 Identities=8% Similarity=-0.074 Sum_probs=183.3
Q ss_pred CCCeEEEEEcCCCcEEEEEe------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEec
Q psy6522 224 DDLLIKLWRARDGKLLATLR------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFC 297 (1407)
Q Consensus 224 ~DG~V~IWDl~tg~~l~tl~------gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafs 297 (1407)
.++.|.+||..+++....+. ........|++. +++++++...++.|.+||..+++.+..+.. ......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence 37899999999998766542 122446778874 345556666679999999999999888853 4567899998
Q ss_pred cCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-CCceEEEEecc
Q psy6522 298 PLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMD 376 (1407)
Q Consensus 298 pd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~DG~I~IwDl~ 376 (1407)
+++ .++++...++.|.+||+.+............ .........+++ .++.++++.. .++.|.+||+.
T Consensus 93 ~~g----~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 93 SDE----KAYVTQIWDYRIFIINPKTYEITGYIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp ETT----EEEEEEBSCSEEEEEETTTTEEEEEEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred CCC----eEEEEECCCCeEEEEECCCCeEEEEEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence 854 5555554889999999987744332221110 000113445666 3444444443 48899999984
Q ss_pred CCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC----------CeEEEEEccCCceEEeeeccCcCCCCCccccccc
Q psy6522 377 GVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD----------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446 (1407)
Q Consensus 377 ~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D----------GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~ 446 (1407)
+. ..+..+.. ......++++++|++++++..+ +.|.+||..+++...... .
T Consensus 161 t~---~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---------------~ 221 (328)
T 3dsm_A 161 TD---KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---------------F 221 (328)
T ss_dssp TT---EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---------------C
T ss_pred CC---eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---------------c
Confidence 32 23333332 3346789999999877766554 789999998877543211 0
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE--EecCCCCeEEEEEecCCCCEEEEE----eCCCcEEEE
Q psy6522 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV--LKGHTNEVFVLESHPFDSRVLLSA----GHDGLIIIW 520 (1407)
Q Consensus 447 ~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~--l~gH~~~V~sLafsP~dg~~LaSg----s~DG~V~IW 520 (1407)
........++|+|++++|+++. +.|.+||..+++.... +..+......++++|.++.++++. ..++.|.+|
T Consensus 222 ~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 222 KLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp CTTCCCEEEEECTTSCEEEEES---SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred CCCCCceeEEEecCCCEEEEEc---cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 0123567899999999998874 3899999988876421 222245789999999566777776 678999999
Q ss_pred ECCCCCccceeeee
Q psy6522 521 DILSSKQRGYKWFH 534 (1407)
Q Consensus 521 Di~sgk~~~l~~~~ 534 (1407)
|.. + +.+..+.
T Consensus 299 d~~-g--~~~~~i~ 309 (328)
T 3dsm_A 299 SPQ-G--KLIDEFY 309 (328)
T ss_dssp CTT-C--CEEEEEE
T ss_pred CCC-C--CEEEEEE
Confidence 998 6 5555554
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=7.6e-12 Score=160.95 Aligned_cols=279 Identities=9% Similarity=-0.087 Sum_probs=177.1
Q ss_pred cCCCCEEEEEECCC-----eEEEEeCCCCceEEEEe------ccCCceEEEEeccCCCCCceEEEEE-----ecCCceeE
Q psy6522 255 DNRNILLAAGTVDK-----TIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLAST-----STDGCIGF 318 (1407)
Q Consensus 255 SpDg~lLaSgs~DG-----tIrVWDl~tg~~v~~l~------~H~~~VtsLafspd~~~~~~~LaSg-----s~DGtI~v 318 (1407)
+|+|.+++....++ .|.+.+...+.....+. +|...+.+++|+|++ ++|+.+ +.+..|++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG----~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG----KKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS----SEEEEEEEETTCSCCEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC----CEEEEEECCCCCceEEEEE
Confidence 36777776665433 23444444444433332 345578999999987 677633 33457999
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCce-------------EEEEeccCCCC-Ccee
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH-------------VRVYKMDGVDS-PLGI 384 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~-------------I~IwDl~~~~~-~~~i 384 (1407)
||+.++....... +.. .....++|+|||+.|+.++.+.. |++|++.+... ...+
T Consensus 152 ~dl~tg~~~~~~~----------~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 152 IDVDSGEWSKVDV----------IEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp EETTTCCBCSSCC----------BSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred EECCCCCCcCCcc----------cCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 9998874320000 000 11256899999999999888765 99999943321 1233
Q ss_pred EEEeecCCCcceEEEcCCCCEEEEEeCCC----eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC
Q psy6522 385 LEVEEHSDKVDSIQWSHSHLRFVSGSRDG----TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 460 (1407)
Q Consensus 385 ~~l~~h~~~V~sIafSpdg~~LaSgs~DG----tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd 460 (1407)
.....|...+.++.|+|+|++|+.++.++ .|.+|+..++.+..+.. +...+....+ ++
T Consensus 220 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-----------------~~~~~~~~~~-~~ 281 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-----------------GVGAKYEVHA-WK 281 (695)
T ss_dssp ECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE-----------------CSSCCEEEEE-ET
T ss_pred EecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec-----------------CCCceEEEEe-cC
Confidence 33344556788999999999888877665 56666654444333211 2223344455 56
Q ss_pred CCEEEEEEe---cCCeEEEEECCCCce---EEEEecC-CCCeEEEEEecCCCCEEEEEeCCCcEEEEECC-CCCccceee
Q psy6522 461 DRWVITAIN---FNFQIKIWDAFNGDL---VQVLKGH-TNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSKQRGYKW 532 (1407)
Q Consensus 461 g~~Lasgs~---~DG~I~IWDl~tg~~---l~~l~gH-~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~-sgk~~~l~~ 532 (1407)
|. +++.+. .++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++...|+..+||.+. ++ ..+..
T Consensus 282 g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g--~~~~~ 356 (695)
T 2bkl_A 282 DR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKG--KPVRT 356 (695)
T ss_dssp TE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTC--CEEEE
T ss_pred Cc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC--CeeEE
Confidence 66 555543 258999999988763 3333333 4467888887 56788999999998888765 23 22222
Q ss_pred eeeeecCCCCCceeEEEECCCCCEEEEEeC----CCeEEEEEcCCCcc
Q psy6522 533 FHNIVEGQGEGALFDGKWSPDGTTCALTDS----YGHLLVYGLGGFKR 576 (1407)
Q Consensus 533 ~~~~~~g~~~~~I~slafSpDG~~LAsgs~----DG~I~Iwdl~sg~~ 576 (1407)
+. ..+.+.+..++++||+..|+.... .+.|++||+.+++.
T Consensus 357 l~----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 357 VQ----LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CC----CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ec----CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 22 233566788899999988775433 37899999988764
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=4.1e-10 Score=127.07 Aligned_cols=280 Identities=8% Similarity=-0.060 Sum_probs=192.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEE-EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc
Q psy6522 201 LGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA 279 (1407)
Q Consensus 201 ~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~-tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~ 279 (1407)
......+.+|+++++|+++++...++.|.+||.. ++... .+..+...+.+|++.+++.++++...++.|.+||.. ++
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3456788999999999988877778999999987 65543 223344679999999999988877668899999988 55
Q ss_pred eEE-EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 280 PIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 280 ~v~-~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
... .+......+.++++.+++ .++++...++.|..|+.. +... .... ......+.++++.++|
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~~-g~~~-~~~~----------~~~~~~~~~i~~d~~g 157 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNG----DIWFTQLNGDRIGKLTAD-GTIY-EYDL----------PNKGSYPAFITLGSDN 157 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTT----CEEEEETTTTEEEEECTT-SCEE-EEEC----------SSTTCCEEEEEECTTS
T ss_pred eEEecCCCCCCCCccceECCCC----CEEEEccCCCeEEEECCC-CCEE-EccC----------CCCCCCceeEEECCCC
Confidence 432 222234678899998865 677776667889888876 3211 1110 1123567899999999
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 438 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~ 438 (1407)
.++++...++.|..|+.. . ... ......+...+.++++++++.++++....+.|.+|+. ++.......
T Consensus 158 ~l~v~~~~~~~i~~~~~~-g-~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~-------- 225 (300)
T 2qc5_A 158 ALWFTENQNNSIGRITNT-G-KLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDI-------- 225 (300)
T ss_dssp SEEEEETTTTEEEEECTT-C-CEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEEC--------
T ss_pred CEEEEecCCCeEEEECCC-C-cEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEEC--------
Confidence 977766667889999872 1 111 1222234456889999999987777667788999988 444332211
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEE-EecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q psy6522 439 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLI 517 (1407)
Q Consensus 439 ~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~-l~gH~~~V~sLafsP~dg~~LaSgs~DG~V 517 (1407)
......+.+++++++|...++... ++.|.+||. ++..... +......+.++++.+ ++.++++.. . .|
T Consensus 226 -------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i 293 (300)
T 2qc5_A 226 -------PTPNARPHAITAGKNSEIWFTEWG-ANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KI 293 (300)
T ss_dssp -------SSTTCCEEEEEECSTTCEEEEETT-TTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EE
T ss_pred -------CCCCCCceEEEECCCCCEEEeccC-CCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ce
Confidence 012345788999999885555444 789999998 5554322 233455688899998 787666554 4 77
Q ss_pred EEEEC
Q psy6522 518 IIWDI 522 (1407)
Q Consensus 518 ~IWDi 522 (1407)
..+|.
T Consensus 294 ~~~~p 298 (300)
T 2qc5_A 294 GKLNL 298 (300)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 77664
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=7.4e-11 Score=137.61 Aligned_cols=266 Identities=8% Similarity=-0.078 Sum_probs=179.3
Q ss_pred CCCeEEEEeCCCCceEEEEe------ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccc
Q psy6522 266 VDKTIRIWNLQTLAPISVLV------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN 339 (1407)
Q Consensus 266 ~DGtIrVWDl~tg~~v~~l~------~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~ 339 (1407)
.++.|.+||..+++....+. ........+.+.. ..++++...++.|.+||..+.+.+....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-----~~lyv~~~~~~~v~viD~~t~~~~~~i~-------- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-----GIGWIVVNNSHVIFAIDINTFKEVGRIT-------- 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-----TEEEEEEGGGTEEEEEETTTCCEEEEEE--------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-----CEEEEEEcCCCEEEEEECcccEEEEEcC--------
Confidence 37899999999988655432 1123457777753 2666777778999999998875443331
Q ss_pred cccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecC-----CCcceEEEcCCCCEEEEEe--CC
Q psy6522 340 ERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS-----DKVDSIQWSHSHLRFVSGS--RD 412 (1407)
Q Consensus 340 ~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~-----~~V~sIafSpdg~~LaSgs--~D 412 (1407)
.......+++++++.++++...++.|.+||+.+ ......+.... .....|++ ++..|+++. .+
T Consensus 82 -----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 82 -----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQ 151 (328)
T ss_dssp -----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTC
T ss_pred -----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCC
Confidence 114578899988885555444789999999843 22222333222 15667888 344555544 48
Q ss_pred CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC----------CeEEEEECCCC
Q psy6522 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----------FQIKIWDAFNG 482 (1407)
Q Consensus 413 GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D----------G~I~IWDl~tg 482 (1407)
+.|.+||+.+++...... .......++++++|++++++.. + +.|.+||..++
T Consensus 152 ~~v~viD~~t~~~~~~i~-----------------~g~~p~~i~~~~dG~l~v~~~~-~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELT-----------------IGIQPTSLVMDKYNKMWTITDG-GYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp CEEEEEETTTTEEEEEEE-----------------CSSCBCCCEECTTSEEEEEBCC-BCTTCSSCBCCCEEEEEETTTT
T ss_pred CEEEEEECCCCeEEEEEE-----------------cCCCccceEEcCCCCEEEEECC-CccCCccccCCceEEEEECCCC
Confidence 999999999887544221 0112345788999987666654 4 78999999999
Q ss_pred ceEEEEecC-CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC-CCEEEEE
Q psy6522 483 DLVQVLKGH-TNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD-GTTCALT 560 (1407)
Q Consensus 483 ~~l~~l~gH-~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD-G~~LAsg 560 (1407)
+.+..+... ......++++| +++.|+.+.. .|.+||+.+++......+. .+......++++|+ +.++++.
T Consensus 214 ~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~-----~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADRVPVRPFLE-----FRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp EEEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSSCCSSCSBC-----CCSSCEEEEEECTTTCCEEEEE
T ss_pred eEEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCceeeeeeec-----CCCCceEEEEEcCCCCeEEEEc
Confidence 988777643 23689999999 8888887755 8999999887321111111 12356889999995 5555555
Q ss_pred ----eCCCeEEEEEcCCCccccccC
Q psy6522 561 ----DSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 561 ----s~DG~I~Iwdl~sg~~~~~lp 581 (1407)
..++.|.+|+.. ++.+.+++
T Consensus 286 ~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred ccccccCCEEEEECCC-CCEEEEEE
Confidence 467899999998 87776654
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.40 E-value=1.7e-11 Score=137.04 Aligned_cols=241 Identities=7% Similarity=-0.038 Sum_probs=163.0
Q ss_pred CEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 206 AVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 206 ~V~~vafSpdG~~La-TGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
...+++++++|++++ +.+.++.|.+||..++........+...+.+|+++++|+++++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999999777 446788999999766543322233445788999999999766665 889999998765443222
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg 364 (1407)
......+.++++.+++ .++++...++.|.+|+..+..... . .......+.+++++++|.++++.
T Consensus 104 ~~~~~~p~~i~~~~~g----~l~v~~~~~~~i~~~~~~~~~~~~--~----------~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQG----AVYVADRGNNRVVKLAAGSKTQTV--L----------PFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp CCSCSSEEEEEECTTC----CEEEEEGGGTEEEEECTTCCSCEE--C----------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred cCCcCCCcceEECCCC----CEEEEECCCCEEEEEECCCceeEe--e----------ccccCCCceeEEEeCCCCEEEEE
Confidence 2333568999999865 677777778889999654331110 0 01112356789999999977777
Q ss_pred eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccc
Q psy6522 365 SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSD 444 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~ 444 (1407)
..++.|.+|+..+.. .......+...+.+|+++++|.++++...++.|.+|+.........
T Consensus 168 ~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~---------------- 228 (270)
T 1rwi_B 168 TDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL---------------- 228 (270)
T ss_dssp GGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC----------------
T ss_pred CCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee----------------
Confidence 778899999984321 1111122335678999999998777777788999998865432210
Q ss_pred cccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc
Q psy6522 445 ETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD 483 (1407)
Q Consensus 445 ~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~ 483 (1407)
.......+..++++++|..+++... ++.|+++++...+
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~-~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRG-NDRVVKLTSLEHH 266 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGG-GTEEEEECCCGGG
T ss_pred ccCCCCCceeEEECCCCCEEEEECC-CCEEEEEcCCCcc
Confidence 0112246789999999985555555 9999999986544
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=4.4e-11 Score=133.64 Aligned_cols=240 Identities=9% Similarity=-0.019 Sum_probs=164.7
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 248 EISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 248 ~ItsLafSpDg~lLa-Sgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
...+|+++++|++++ +.+.++.|.+|+..+.........+...+.+|++.+++ .++++.. ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g----~l~v~~~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG----TVYVTDF-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC----CEEEEET-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC----CEEEEcC-CCEEEEEeCCCceE
Confidence 678999999999777 54678899999986654332222333567889999865 6555555 88999998765421
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEE
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 406 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~L 406 (1407)
.. . . ......+.+++++++|.++++...++.|.+|+... .............+.+|+++++|.++
T Consensus 100 ~~--~-~---------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~l~ 164 (270)
T 1rwi_B 100 TV--L-P---------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGNVY 164 (270)
T ss_dssp EE--C-C---------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred ee--e-e---------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCCEE
Confidence 11 0 0 01124678999999999887777788999997522 11111122233467899999999977
Q ss_pred EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEE
Q psy6522 407 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQ 486 (1407)
Q Consensus 407 aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~ 486 (1407)
++...++.|.+||.......... ......+..++++++|..+++... ++.|.+|+........
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~p~~i~~d~~g~l~v~~~~-~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVVLP----------------FTDITAPWGIAVDEAGTVYVTEHN-TNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEECC----------------CSSCCSEEEEEECTTCCEEEEETT-TSCEEEECTTCSCCEE
T ss_pred EEECCCCEEEEEecCCCceEeec----------------ccCCCCceEEEECCCCCEEEEECC-CCcEEEEcCCCCccee
Confidence 77777889999998765532210 011245788999999955555444 7899999987655443
Q ss_pred EEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 487 VLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 487 ~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
....+...+.++++++ +++++++...++.|.++++...
T Consensus 228 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECCCGG
T ss_pred eccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcCCCc
Confidence 3333446789999999 8899999999999999998765
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=5.2e-10 Score=133.25 Aligned_cols=288 Identities=11% Similarity=-0.010 Sum_probs=187.3
Q ss_pred EcCCCCEEEEEEC--CC---eEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEeCC
Q psy6522 212 FDKLGEVIVTGAD--DL---LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQ 276 (1407)
Q Consensus 212 fSpdG~~LaTGS~--DG---~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs----------~DGtIrVWDl~ 276 (1407)
..|+++++++... .. .|.+||..+++.+.++.....+ .++|+|||++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777666643 22 8899999999999888754444 999999999998886 36789999999
Q ss_pred CCceEEEEecc-------CCceEEEEeccCCCCCceEEEEEec--CCceeEEeeccccccce-eeeccccccccccCCCC
Q psy6522 277 TLAPISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISK-TVFHEPVMFNERIRPGN 346 (1407)
Q Consensus 277 tg~~v~~l~~H-------~~~VtsLafspd~~~~~~~LaSgs~--DGtI~vWDl~t~~~~~~-~~~~~~~~~~~~~~~h~ 346 (1407)
+++.+..+... ......+.|+|++ ++|++++. ++.|.++| .+++.... ....
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG----~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~------------- 167 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNN----ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP------------- 167 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCC----CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-------------
Confidence 98888776532 1234588999987 78887764 57899999 77643322 1110
Q ss_pred cceEEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeE--EEeecCCC-cceEEEcCCCCEEEEEeCCCeEEEEEccC
Q psy6522 347 AHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSDK-VDSIQWSHSHLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 347 ~~I~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~--~l~~h~~~-V~sIafSpdg~~LaSgs~DGtI~IWDl~t 422 (1407)
.|+.+.|++ ..+++.+.||.+.+++. ......... .......+ .....+.+++..++..+..+.+.+.|+..
T Consensus 168 ---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 168 ---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred ---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccC
Confidence 124444544 34556677888888887 332211110 00011111 12345666666555555788999999876
Q ss_pred CceEEee-eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe---------cCCeEEEEECCCCceEEEEecCC
Q psy6522 423 SQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---------FNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 423 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~---------~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
....... +..... ..............++++++++.|+++.. .++.|.++|+.+++.+..+...
T Consensus 244 ~~~~v~~~~~~~~~-----~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g- 317 (373)
T 2mad_H 244 AGATNKAPIDALSG-----GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG- 317 (373)
T ss_pred CcceEeeeeeecCC-----cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-
Confidence 5422211 000000 00001112233455789999999888764 1358999999999999888633
Q ss_pred CCeEEEEEecCCCC-EEEEEe-CCCcEEEEECCCCCccceee
Q psy6522 493 NEVFVLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQRGYKW 532 (1407)
Q Consensus 493 ~~V~sLafsP~dg~-~LaSgs-~DG~V~IWDi~sgk~~~l~~ 532 (1407)
.....++|+| |++ +|+++. .++.|.+||+.++ +.+..
T Consensus 318 ~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~--~vv~~ 356 (373)
T 2mad_H 318 HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAG--DQDQS 356 (373)
T ss_pred CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCC--CEEee
Confidence 3588999999 888 777777 5899999999988 55544
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=1.9e-10 Score=136.72 Aligned_cols=305 Identities=10% Similarity=0.042 Sum_probs=198.0
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEe
Q psy6522 210 VLFDKLGEVIVTGAD-----DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWN 274 (1407)
Q Consensus 210 vafSpdG~~LaTGS~-----DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs----------~DGtIrVWD 274 (1407)
....|+++.+++... ++.|.+.|..+++.+.++.....+ .++++|||++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445788988888866 679999999999999999855555 499999999887765 367899999
Q ss_pred CCCCceEEEEeccC-------CceEEEEeccCCCCCceEEEEEec--CCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 275 LQTLAPISVLVGHQ-------GIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 275 l~tg~~v~~l~~H~-------~~VtsLafspd~~~~~~~LaSgs~--DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
..+++.+..+.-.. .....+.|+|++ ++|+++.. ++.|.++|+.+.+........
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------ 179 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------ 179 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECC------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCC----CEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------
Confidence 99999988875321 234678999987 77777753 689999999988655443221
Q ss_pred CcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec----CCCc-ceEEEc-CCCCEEEEEeCCCeEEEEE
Q psy6522 346 NAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH----SDKV-DSIQWS-HSHLRFVSGSRDGTALIWY 419 (1407)
Q Consensus 346 ~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h----~~~V-~sIafS-pdg~~LaSgs~DGtI~IWD 419 (1407)
+ ....+......+++.+.||.+.+.++....... .....+ ...+ ....|. ++|++++ .+.+|.|.+.|
T Consensus 180 -g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~--~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d 253 (386)
T 3sjl_D 180 -D--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE--ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID 253 (386)
T ss_dssp -S--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCE--EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred -C--cceeecCCCceeEEECCCCCEEEEECCCCCeEE--EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence 1 011222233455566677777777764322221 111111 1222 124564 5665444 56689999999
Q ss_pred ccCCceEEee-eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEEe
Q psy6522 420 YKCSQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLK 489 (1407)
Q Consensus 420 l~t~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~---------DG~I~IWDl~tg~~l~~l~ 489 (1407)
+.+....... ... . ................++++++++.++++... .+.|.++|+.+++.+..+.
T Consensus 254 ~~~~~~~v~~~~~~---~--~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 254 LSSGDAKFLPAVEA---L--TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp CTTSSCEECCCEES---S--CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCCcceeecceec---c--ccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 8766432210 000 0 00000000111223347778999999987641 2579999999999998876
Q ss_pred cCCCCeEEEEEecCCCC-EEEEE-eCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC
Q psy6522 490 GHTNEVFVLESHPFDSR-VLLSA-GHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 553 (1407)
Q Consensus 490 gH~~~V~sLafsP~dg~-~LaSg-s~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD 553 (1407)
.- ..++.|++++ |++ +|+++ ..++.|.++|..++ +.+..+. ..+....|.+++|
T Consensus 329 vg-~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~t~--k~~~~i~------~~~~p~~l~~s~d 384 (386)
T 3sjl_D 329 MG-HEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESG--EELRSVN------QLGHGPQVITTAD 384 (386)
T ss_dssp EE-EEECEEEECS-SSSCEEEEEETTTTEEEEEETTTC--CEEEEEC------CCCSSCCEEEECC
T ss_pred CC-CCcceEEECC-CCCeEEEEEcCCCCeEEEEECCCC--cEEEEec------CCCCCceeEECCc
Confidence 33 2678999999 775 66654 55899999999998 7777765 2234455666665
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.35 E-value=1.4e-09 Score=122.59 Aligned_cols=280 Identities=7% Similarity=-0.022 Sum_probs=190.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEE-EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec
Q psy6522 244 GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322 (1407)
Q Consensus 244 gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~-l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~ 322 (1407)
.....+.+|++.++|.++++...++.|.+||.. ++.... +..+...+.++++.+++ .++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG----DIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS----CEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC----CEEEEecCCCeEEEECCC
Confidence 345678999999999988887778999999988 554332 22334678899998865 677766667889999876
Q ss_pred cccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC
Q psy6522 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402 (1407)
Q Consensus 323 t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd 402 (1407)
+.. ..... ......+.++++.++|.++++...++.|..|+.. .... ...+......+.+++++++
T Consensus 92 -g~~-~~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 92 -GGF-TEYPL----------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIY-EYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp -SCE-EEEEC----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEE-EEECSSTTCCEEEEEECTT
T ss_pred -CCe-EEecC----------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEE-EccCCCCCCCceeEEECCC
Confidence 321 11110 1112568899999999988877778889999873 2111 1122223456889999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC
Q psy6522 403 HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG 482 (1407)
Q Consensus 403 g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg 482 (1407)
+.++++...++.|..||. ++....... ......+..++++++|.+.++... .+.|.+||. ++
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~---------------~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~-~g 218 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPL---------------PTNAAAPVGITSGNDGALWFVEIM-GNKIGRITT-TG 218 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEEC---------------SSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-TC
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeC---------------CCCCCCcceEEECCCCCEEEEccC-CCEEEEEcC-CC
Confidence 997776666789999988 554332111 112345788999999876655544 778999998 56
Q ss_pred ceEEE-EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe
Q psy6522 483 DLVQV-LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 561 (1407)
Q Consensus 483 ~~l~~-l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs 561 (1407)
+.... +..+...+.++++.+ ++.++++...++.|.+||. ++ . +..+. + ......+.+++++++|+++++..
T Consensus 219 ~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g--~-~~~~~--~-~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 219 EISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN-DN--T-IQEYQ--L-QTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT-TS--C-EEEEE--C-CSTTCCCCCEEECTTSCEEEECS
T ss_pred cEEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC-CC--c-EEEEE--C-CccCCccceeEeCCCCCEEEEcc
Confidence 55443 334456789999999 7887777767799999998 34 2 12221 1 12345688999999998666554
Q ss_pred CCCeEEEEEc
Q psy6522 562 SYGHLLVYGL 571 (1407)
Q Consensus 562 ~DG~I~Iwdl 571 (1407)
. .|..++.
T Consensus 291 -~-~i~~~~p 298 (300)
T 2qc5_A 291 -C-KIGKLNL 298 (300)
T ss_dssp -S-EEEEEEE
T ss_pred -C-ceEEeCC
Confidence 4 7777764
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.34 E-value=4.2e-10 Score=128.31 Aligned_cols=248 Identities=11% Similarity=-0.023 Sum_probs=176.2
Q ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccC-CceE
Q psy6522 215 LGEVIVTGADDLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIIT 292 (1407)
Q Consensus 215 dG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~-~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~-~~Vt 292 (1407)
.+++|++++.++.|.+||..+|+.+.++..+. ..+.+++++|+|++|+ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998776 5789999999999998 45788999999 899999888653 5788
Q ss_pred EEEeccCCCCCceEEEEEec-CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEE
Q psy6522 293 GVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVR 371 (1407)
Q Consensus 293 sLafspd~~~~~~~LaSgs~-DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~ 371 (1407)
++.+.+++ ++|++.+. ++.|..++. .++.+......... ..+......+++.++|.+|++...++.|.
T Consensus 81 ~~~~~~dG----~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~ 149 (276)
T 3no2_A 81 TARILPDG----NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI------ERPHAQFRQINKNKKGNYLVPLFATSEVR 149 (276)
T ss_dssp EEEECTTS----CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC------SSGGGSCSCCEECTTSCEEEEETTTTEEE
T ss_pred ccEECCCC----CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC------CcccccccCceECCCCCEEEEecCCCEEE
Confidence 89999876 88888877 777777765 33332222211100 01112334567899999999999999999
Q ss_pred EEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccccccccccc
Q psy6522 372 VYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 451 (1407)
Q Consensus 372 IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 451 (1407)
+||.. ...+..+... ..+.++.+.++|.++++++.++.|..+|..+++.+....... .. ......
T Consensus 150 ~~d~~----G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~--~~--------~~~l~~ 214 (276)
T 3no2_A 150 EIAPN----GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND--IE--------GVQLFF 214 (276)
T ss_dssp EECTT----SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG--SB--------SCCCSE
T ss_pred EECCC----CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC--CC--------Cccccc
Confidence 99983 2334444433 456778889999999999888899999999887654332100 00 001245
Q ss_pred EEEEEECCCCCEEEEEEec-C------CeEEEEEC-CCCceEEEEecC
Q psy6522 452 VTMVAWDASDRWVITAINF-N------FQIKIWDA-FNGDLVQVLKGH 491 (1407)
Q Consensus 452 VtslafSpdg~~Lasgs~~-D------G~I~IWDl-~tg~~l~~l~gH 491 (1407)
+..++..++|..+++.... . +..+++.+ .+|+.+..+..+
T Consensus 215 ~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~ 262 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDK 262 (276)
T ss_dssp EEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCT
T ss_pred cccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCc
Confidence 7788889999888877420 0 12344444 467777766644
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.31 E-value=1.2e-10 Score=150.84 Aligned_cols=279 Identities=13% Similarity=0.065 Sum_probs=172.6
Q ss_pred cCCCCEEEEEECCCe---EEEEEc--C---CCcEEEEE------eCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEE
Q psy6522 213 DKLGEVIVTGADDLL---IKLWRA--R---DGKLLATL------RGCSGEISDIAIDNRNILLAAGTVD-----KTIRIW 273 (1407)
Q Consensus 213 SpdG~~LaTGS~DG~---V~IWDl--~---tg~~l~tl------~gH~~~ItsLafSpDg~lLaSgs~D-----GtIrVW 273 (1407)
+|+|++++....++. -.||-. . .+.....+ .+|...+..++|||||++||.++.+ ..|+||
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 378888776654432 445543 3 33322221 2333468899999999999887654 469999
Q ss_pred eCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc--------------eeEEeeccccccceeeeccccccc
Q psy6522 274 NLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC--------------IGFWKYKLDIDISKTVFHEPVMFN 339 (1407)
Q Consensus 274 Dl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt--------------I~vWDl~t~~~~~~~~~~~~~~~~ 339 (1407)
|+.+++.+... .+...+..++|+|+ +.|+.++.++. |.+|++.++..........
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-----~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~----- 263 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-----DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT----- 263 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-----SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-----
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-----CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-----
Confidence 99999876532 12222357889984 46666665543 7788876653221221111
Q ss_pred cccCCCCcceEEEEECCCCceEEEeeCCc-----eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC--
Q psy6522 340 ERIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-- 412 (1407)
Q Consensus 340 ~~~~~h~~~I~~vafSpdg~~Lasgs~DG-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D-- 412 (1407)
..+...+..+.|+|||++|+..+.++ .|++||+.+... .....+..+...+... ++++|..|+..+.+
T Consensus 264 ---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~ 338 (741)
T 1yr2_A 264 ---PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-GPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA 338 (741)
T ss_dssp ---TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-CCCEEEECSSSSCEEE-EEEETTEEEEEECTTC
T ss_pred ---CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-cccEEecCCCCceEEE-EeccCCEEEEEECCCC
Confidence 12223578899999999988877543 899999854310 1123344455555555 35889888877753
Q ss_pred --CeEEEEEccCC--ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC-CCceEEE
Q psy6522 413 --GTALIWYYKCS--QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF-NGDLVQV 487 (1407)
Q Consensus 413 --GtI~IWDl~t~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~-tg~~l~~ 487 (1407)
+.|.+||+.++ .+..+.. .+...+..++|+ ++.++++... ++..+||.+. ++..+..
T Consensus 339 ~~~~l~~~d~~~~~~~~~~l~~----------------~~~~~l~~~~~~-~~~lv~~~~~-dg~~~l~~~~~~g~~~~~ 400 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPRFDTVVP----------------ESKDNLESVGIA-GNRLFASYIH-DAKSQVLAFDLDGKPAGA 400 (741)
T ss_dssp TTCEEEEEECSSSSCEEEEEEC----------------CCSSEEEEEEEE-BTEEEEEEEE-TTEEEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCCccccEEEec----------------CCCCeEEEEEEE-CCEEEEEEEE-CCEEEEEEEeCCCCceee
Confidence 45999998874 3332211 122245667776 4555555555 8877766543 4666777
Q ss_pred EecC-CCCeEEEEEecCCCCEE-EEEe---CCCcEEEEECCCCC
Q psy6522 488 LKGH-TNEVFVLESHPFDSRVL-LSAG---HDGLIIIWDILSSK 526 (1407)
Q Consensus 488 l~gH-~~~V~sLafsP~dg~~L-aSgs---~DG~V~IWDi~sgk 526 (1407)
+..+ .+.|..+.++| ++..| ++.+ ..++|++||+.+++
T Consensus 401 l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 401 VSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7653 67788999999 66544 4433 34789999998873
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.28 E-value=9.9e-10 Score=125.31 Aligned_cols=245 Identities=11% Similarity=0.031 Sum_probs=163.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEE-------EECCCeEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCC-CCEEEEEECCC
Q psy6522 201 LGHLSAVFCVLFDKLGEVIVT-------GADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNR-NILLAAGTVDK 268 (1407)
Q Consensus 201 ~GH~~~V~~vafSpdG~~LaT-------GS~DG~V~IWDl~tg~~l~tl~----gH~~~ItsLafSpD-g~lLaSgs~DG 268 (1407)
.+......+++|+++|.++++ ++.++.|.+||..+++...... ++...+.+++++++ ++++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 334456789999999988888 5778899999988887653322 25577999999999 76555544 45
Q ss_pred eEEEEeCCCCceEEE-Eec----cCCceEEEEeccCCCCCceEEEEEecC---------------CceeEEeeccccccc
Q psy6522 269 TIRIWNLQTLAPISV-LVG----HQGIITGVNFCPLEVNGFNYLASTSTD---------------GCIGFWKYKLDIDIS 328 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~-l~~----H~~~VtsLafspd~~~~~~~LaSgs~D---------------GtI~vWDl~t~~~~~ 328 (1407)
.|.+||.. ++.... ... +...+.++++.+++ .++++...+ +.|..|+.. +. ..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~ 165 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG----NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MI 165 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS----CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC----CEEEEecCcccccccccccccCCCCeEEEECCC-CC-EE
Confidence 78999998 665433 221 12357899999865 666666554 455555543 21 11
Q ss_pred eeeeccccccccccCCCCcceEEEEEC----CCCceEEEe-eCCceEEEEeccCCCCCc---eeEEEeecC-CCcceEEE
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFS----PGGLFLATG-SGDHHVRVYKMDGVDSPL---GILEVEEHS-DKVDSIQW 399 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafS----pdg~~Lasg-s~DG~I~IwDl~~~~~~~---~i~~l~~h~-~~V~sIaf 399 (1407)
... .+......++|+ ++++.|+++ ..++.|.+|++....... ....+..+. ..+..+++
T Consensus 166 ~~~------------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 166 QVD------------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp EEE------------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred Eec------------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 110 011345788999 999765554 567899999974211111 122223333 56788999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 400 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 400 Spdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
+++|.++++...++.|.+||..+++..... ..+...+.+++|+++++.|++++..++.|..|++
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~----------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRI----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEE----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEE----------------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 999998888888899999998755432211 0122568899999999977777654679999997
Q ss_pred CC
Q psy6522 480 FN 481 (1407)
Q Consensus 480 ~t 481 (1407)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=1.2e-09 Score=129.79 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=191.6
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEe----------cCCce
Q psy6522 252 IAIDNRNILLAAGTV-----DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS----------TDGCI 316 (1407)
Q Consensus 252 LafSpDg~lLaSgs~-----DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs----------~DGtI 316 (1407)
....|+++.+++... ++.|.+.|..+++.+..+.....+ .+.++|++ ++|++++ .++.|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG----~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDG----SFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS----SCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCC----CEEEEEcccccccccCCCCCEE
Confidence 345789998888866 679999999999999988755555 49999987 6666554 36789
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC--CceEEEEeccCCCCCceeEEEeecCCCc
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG--DHHVRVYKMDGVDSPLGILEVEEHSDKV 394 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~--DG~I~IwDl~~~~~~~~i~~l~~h~~~V 394 (1407)
.+||..+.+............ . ........++|+|||++|+++.. ++.|.++|+.. ...+..+.- .+ .
T Consensus 112 sviD~~t~~v~~~I~v~~g~r----~-~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---~~vv~tI~v-~g-~ 181 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELPDAPR----F-LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDV-PD-C 181 (386)
T ss_dssp EEECTTTCCEEEEEEETTCCC----C-CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEEC-CS-E
T ss_pred EEEECCCCeEEEEEECCCccc----c-ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---CcEEEEEEC-CC-c
Confidence 999998876554443221000 0 00123456899999999888864 68999999943 333333321 11 1
Q ss_pred ceEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEeeeccCcCCCCCccccccccccccEEEEEE-CCCCCEEEEEEecCC
Q psy6522 395 DSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW-DASDRWVITAINFNF 472 (1407)
Q Consensus 395 ~sIafSpdg~~LaSgs~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf-Spdg~~Lasgs~~DG 472 (1407)
...+......|++.+.||.+.+.++.+ ++..... ..... ...........| .++|++++ .+. +|
T Consensus 182 -~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~~--------~~~~~~~~~~~~~~~dG~~~~-vs~-~g 247 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVFH--------PEDEFLINHPAYSQKAGRLVW-PTY-TG 247 (386)
T ss_dssp -EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCCS--------CTTSCBCSCCEEETTTTEEEE-EBT-TS
T ss_pred -ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cceec--------cccccccccceeEcCCCcEEE-EeC-CC
Confidence 222333445777888999999999876 4432111 00000 000001111255 46776655 444 79
Q ss_pred eEEEEECCCCce--EEEEe---------c-CCCCeEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCCccce
Q psy6522 473 QIKIWDAFNGDL--VQVLK---------G-HTNEVFVLESHPFDSRVLLSAGH----------DGLIIIWDILSSKQRGY 530 (1407)
Q Consensus 473 ~I~IWDl~tg~~--l~~l~---------g-H~~~V~sLafsP~dg~~LaSgs~----------DG~V~IWDi~sgk~~~l 530 (1407)
.|++.|+.+... +..+. + ..+.+..+++++ +++.|+.... .+.|.+.|+.++ +.+
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--kv~ 324 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--ERL 324 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--CEE
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCC--eEE
Confidence 999999976542 22222 0 112334577788 7776666543 257999999998 677
Q ss_pred eeeeeeecCCCCCceeEEEECCCCC-EEEEEe-CCCeEEEEEcCCCccccccCC-----ceEecCC
Q psy6522 531 KWFHNIVEGQGEGALFDGKWSPDGT-TCALTD-SYGHLLVYGLGGFKRPQNIPR-----ELFFHTD 589 (1407)
Q Consensus 531 ~~~~~~~~g~~~~~I~slafSpDG~-~LAsgs-~DG~I~Iwdl~sg~~~~~lp~-----~v~Fs~D 589 (1407)
..+. -...+..|+|++|++ +|+++. .++.|.++|..+++.+.+++. ++.+++|
T Consensus 325 ~~i~------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 325 AKFE------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEE------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEE------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 7665 123688999999997 666654 489999999999999887754 4555544
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.28 E-value=1.4e-09 Score=124.08 Aligned_cols=252 Identities=8% Similarity=0.057 Sum_probs=167.8
Q ss_pred eCCCCCeEEEEEcCCCCEEEE-------EECCCeEEEEeCCCCceEEEEe----ccCCceEEEEeccC-CCCCceEEEEE
Q psy6522 243 RGCSGEISDIAIDNRNILLAA-------GTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPL-EVNGFNYLAST 310 (1407)
Q Consensus 243 ~gH~~~ItsLafSpDg~lLaS-------gs~DGtIrVWDl~tg~~v~~l~----~H~~~VtsLafspd-~~~~~~~LaSg 310 (1407)
...-....+++|++++.++++ +..++.|.+||..+++...... ++...+.++++.++ + .++++.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g----~l~v~~ 89 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN----QLFVAD 89 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS----EEEEEE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC----cEEEEE
Confidence 334456789999999998888 5678899999988877543322 25567899999986 4 555544
Q ss_pred ecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC---------------ceEEEEec
Q psy6522 311 STDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKM 375 (1407)
Q Consensus 311 s~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D---------------G~I~IwDl 375 (1407)
. .+.|.+||.. +... ....... .......+.+++++++|.++++...+ +.|..|+.
T Consensus 90 ~-~~~l~~~d~~-g~~~-~~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 90 M-RLGLLVVQTD-GTFE-EIAKKDS------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp T-TTEEEEEETT-SCEE-ECCSBCT------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred C-CCCEEEEeCC-CCEE-EEEeccC------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 4 4468889877 4221 1100000 00112457899999999887776654 55666665
Q ss_pred cCCCCCceeEEEeecCCCcceEEEc----CCCCEEEEE-eCCCeEEEEEcc-CCceEEeeeccCcCCCCCcccccccccc
Q psy6522 376 DGVDSPLGILEVEEHSDKVDSIQWS----HSHLRFVSG-SRDGTALIWYYK-CSQWRFIRLDMNTCLPHTKETSDETNKK 449 (1407)
Q Consensus 376 ~~~~~~~~i~~l~~h~~~V~sIafS----pdg~~LaSg-s~DGtI~IWDl~-t~~~~~~~l~~~~~~~~~~~~~~~~~~~ 449 (1407)
. .. +..+..+......++|+ +++..|+.+ ..++.|.+|++. .+....... ......+.
T Consensus 161 ~--g~---~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~-----------~~~~~~~~ 224 (314)
T 1pjx_A 161 D--GQ---MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV-----------WGHIPGTH 224 (314)
T ss_dssp T--SC---EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-----------EEECCCCS
T ss_pred C--CC---EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE-----------EEECCCCC
Confidence 2 22 22223344456889999 999765554 567899999986 343211100 00001112
Q ss_pred -ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCC-EEEEEeCCCcEEEEECCCC
Q psy6522 450 -IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 450 -~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~-~LaSgs~DG~V~IWDi~sg 525 (1407)
..+..++++++|.++++... ++.|.+||..+++.+..+..+...+.++++++ +++ ++++...++.|..|++...
T Consensus 225 ~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 225 EGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 45677999999987777666 88999999987888777877778899999999 888 5555566789999998653
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.28 E-value=1.6e-10 Score=149.71 Aligned_cols=278 Identities=11% Similarity=-0.048 Sum_probs=172.9
Q ss_pred cCCCCEEEEEECCCe---EEEEeC--C---CCceEEEEe------ccCCceEEEEeccCCCCCceEEEEEecC-C----c
Q psy6522 255 DNRNILLAAGTVDKT---IRIWNL--Q---TLAPISVLV------GHQGIITGVNFCPLEVNGFNYLASTSTD-G----C 315 (1407)
Q Consensus 255 SpDg~lLaSgs~DGt---IrVWDl--~---tg~~v~~l~------~H~~~VtsLafspd~~~~~~~LaSgs~D-G----t 315 (1407)
+|+|++++....++. -.||.. . .+.....+. +|...+..++|+|++ ++|+.++.+ | .
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG----~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG----RLLAYSVQDGGSDWRT 190 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS----SEEEEEEEETTCSEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC----CEEEEEEcCCCCceEE
Confidence 378887776654432 444543 3 333333221 233468899999987 777766544 3 5
Q ss_pred eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCce--------------EEEEeccCCCC-
Q psy6522 316 IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH--------------VRVYKMDGVDS- 380 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~--------------I~IwDl~~~~~- 380 (1407)
|++||+.++........ ...+..++|+|| +.|+.++.++. |++|++.+...
T Consensus 191 i~v~dl~tg~~~~~~~~-------------~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 256 (741)
T 1yr2_A 191 VKFVGVADGKPLADELK-------------WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA 256 (741)
T ss_dssp EEEEETTTCCEEEEEEE-------------EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG
T ss_pred EEEEECCCCCCCCccCC-------------CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh
Confidence 99999988754321110 012346899999 88888876543 88898843221
Q ss_pred CceeEEEeecCCCcceEEEcCCCCEEEEEeCCC-----eEEEEEccCC--c-eEEeeeccCcCCCCCccccccccccccE
Q psy6522 381 PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS--Q-WRFIRLDMNTCLPHTKETSDETNKKIKV 452 (1407)
Q Consensus 381 ~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG-----tI~IWDl~t~--~-~~~~~l~~~~~~~~~~~~~~~~~~~~~V 452 (1407)
...+.....+...+.++.|+|+|++|+..+.++ .|++||+.++ . +..+.. ....+
T Consensus 257 ~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-----------------~~~~~ 319 (741)
T 1yr2_A 257 DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-----------------DLKAQ 319 (741)
T ss_dssp CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-----------------SSSSC
T ss_pred CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-----------------CCCce
Confidence 112222222333578999999999888877544 7999999876 3 322211 11122
Q ss_pred EEEEECCCCCEEEEEEec---CCeEEEEECCCC--ceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC-CCC
Q psy6522 453 TMVAWDASDRWVITAINF---NFQIKIWDAFNG--DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDIL-SSK 526 (1407)
Q Consensus 453 tslafSpdg~~Lasgs~~---DG~I~IWDl~tg--~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~-sgk 526 (1407)
... ++++|..|++.+.. ++.|.+||+.++ .....+..+...+..++|+ ++.++++...||..+||.+. ++
T Consensus 320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS-
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC-
Confidence 223 34889988888762 346999999875 3444444555556677776 46788888999988777654 33
Q ss_pred ccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe----CCCeEEEEEcCCCcc
Q psy6522 527 QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD----SYGHLLVYGLGGFKR 576 (1407)
Q Consensus 527 ~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs----~DG~I~Iwdl~sg~~ 576 (1407)
.....+. ..+.+.+..+.++||++.|+... ..+.|++||+.+++.
T Consensus 396 -~~~~~l~----~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 396 -KPAGAVS----LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp -CEEEECB----CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred -Cceeecc----CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2233222 22356788999999998666443 237899999988763
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.27 E-value=9.2e-10 Score=125.51 Aligned_cols=214 Identities=12% Similarity=-0.026 Sum_probs=157.0
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceEEEEeccC-CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccc
Q psy6522 257 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ-GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEP 335 (1407)
Q Consensus 257 Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~-~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~ 335 (1407)
.+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++|++ ++|+ +.++.|..||. +++.+.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG----~ilv--s~~~~V~~~d~-~G~~~W~~~~--- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG----EILF--SYSKGAKMITR-DGRELWNIAA--- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS----CEEE--ECBSEEEEECT-TSCEEEEEEC---
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC----CEEE--eCCCCEEEECC-CCCEEEEEcC---
Confidence 46789999999999999999999999998776 478899999976 7777 45777999998 5543333221
Q ss_pred cccccccCCCCcceEEEEECCCCceEEEeeC-CceEEEEeccCCCCCceeEEEe------ecCCCcceEEEcCCCCEEEE
Q psy6522 336 VMFNERIRPGNAHILCSSFSPGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVE------EHSDKVDSIQWSHSHLRFVS 408 (1407)
Q Consensus 336 ~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-DG~I~IwDl~~~~~~~~i~~l~------~h~~~V~sIafSpdg~~LaS 408 (1407)
+....+.++.+.++|++|++.+. ++.|..++..+ ..+..+. .+......+++.++|.+|++
T Consensus 74 --------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G----k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 74 --------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG----EVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp --------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS----CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred --------CCCccccccEECCCCCEEEEecCCCCEEEEEeCCC----CEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 11245788999999999999887 77777777521 2222222 12234566788999999999
Q ss_pred EeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE
Q psy6522 409 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 409 gs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l 488 (1407)
...++.|.+||.. ++.+..... ...+..+.+.++|..++++.. ++.|..+|..+|+.+..+
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~-----------------~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKL-----------------SGTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEEC-----------------SSCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEE
T ss_pred ecCCCEEEEECCC-CCEEEEEEC-----------------CCCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEe
Confidence 9999999999988 664433210 112334677899999888876 789999999999999998
Q ss_pred ecCC------CCeEEEEEecCCCCEEEEEe
Q psy6522 489 KGHT------NEVFVLESHPFDSRVLLSAG 512 (1407)
Q Consensus 489 ~gH~------~~V~sLafsP~dg~~LaSgs 512 (1407)
..+. ..+..++..+ ++.++++..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~-~G~i~v~~~ 231 (276)
T 3no2_A 203 NANDIEGVQLFFVAQLFPLQ-NGGLYICNW 231 (276)
T ss_dssp EGGGSBSCCCSEEEEEEECT-TSCEEEEEE
T ss_pred cCCCCCCccccccccceEcC-CCCEEEEec
Confidence 7542 2367777777 777777763
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=1.3e-09 Score=131.50 Aligned_cols=289 Identities=9% Similarity=0.045 Sum_probs=185.5
Q ss_pred CCCCEEEEEECC-----CeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEeCCCC
Q psy6522 214 KLGEVIVTGADD-----LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTL 278 (1407)
Q Consensus 214 pdG~~LaTGS~D-----G~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs----------~DGtIrVWDl~tg 278 (1407)
++++++++.... +.|.++|+.+++.+.++..-..+ .++++||+++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 455655555442 69999999999999999855555 899999999888775 3678999999999
Q ss_pred ceEEEEecc-------CCceEEEEeccCCCCCceEEEEEec--CCceeEEeeccccccceeeeccccccccccCCCCcce
Q psy6522 279 APISVLVGH-------QGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 279 ~~v~~l~~H-------~~~VtsLafspd~~~~~~~LaSgs~--DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I 349 (1407)
+.+..+.-. ......+.|+|++ ++|+++.. ++.|.+.|+.+.+.........
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--------------- 220 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--------------- 220 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------------
Confidence 998877532 1234678999977 77777764 5789999999875544432211
Q ss_pred EEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeE--EEeecCCC-cceEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q psy6522 350 LCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGIL--EVEEHSDK-VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 425 (1407)
Q Consensus 350 ~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~--~l~~h~~~-V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~ 425 (1407)
|....|++ ..+++.+.||.+.+.++ ......... .+.....+ ...+.|.+++..++..+..+.|.+.|+.....
T Consensus 221 -~~~~~p~g~~~~v~~~~dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 221 -CYHIFPASPTVFYMNCRDGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp -EEEEEEEETTEEEEEETTSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred -ceeeccCCCcEEEEEcCCCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 01122221 33344444555555554 111111000 01111111 12456899988887778889999999876553
Q ss_pred EEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec---------CCeEEEEECCCCceEEEEecCCCCeE
Q psy6522 426 RFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---------NFQIKIWDAFNGDLVQVLKGHTNEVF 496 (1407)
Q Consensus 426 ~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~---------DG~I~IWDl~tg~~l~~l~gH~~~V~ 496 (1407)
..... ......... ...........++++++++.++++... ++.|.++|..+.+.+..+.... ...
T Consensus 299 ~v~~~--~~~~~~~~i--~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~ 373 (426)
T 3c75_H 299 TFRAP--IEALTEAER--ADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EID 373 (426)
T ss_dssp EECCC--EESSCTTTG--GGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EEC
T ss_pred EEeee--eeecccccc--ccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcC
Confidence 32110 000000000 000011112236889999988887531 3579999999999998886432 478
Q ss_pred EEEEecCCCC-EEEEEe-CCCcEEEEECCCCCccceeee
Q psy6522 497 VLESHPFDSR-VLLSAG-HDGLIIIWDILSSKQRGYKWF 533 (1407)
Q Consensus 497 sLafsP~dg~-~LaSgs-~DG~V~IWDi~sgk~~~l~~~ 533 (1407)
.|+|+| |++ +|+++. .++.|.++|+.++ +.+..+
T Consensus 374 gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~--kvv~tI 409 (426)
T 3c75_H 374 SINVSQ-DAEPLLYALSAGTQTLHIYDAATG--EELRSV 409 (426)
T ss_dssp EEEECC-SSSCEEEEEETTTTEEEEEETTTC--CEEEEE
T ss_pred eEEEcc-CCCEEEEEEcCCCCeEEEEECCCC--CEEEEe
Confidence 899999 888 888887 5999999999998 666654
No 207
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.24 E-value=9.3e-09 Score=122.45 Aligned_cols=258 Identities=7% Similarity=-0.114 Sum_probs=169.6
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcCC
Q psy6522 195 RQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIAIDNR 257 (1407)
Q Consensus 195 ~~~~~L~GH~~~V~~vafSpdG~~LaTGS----------~DG~V~IWDl~tg~~l~tl~gH-------~~~ItsLafSpD 257 (1407)
++..++.....+ .++|+|||++|+++. .++.|.+||..+++.+.++.-. ......++|+||
T Consensus 58 ~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD 135 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence 344455443344 899999999999886 3678999999999888877532 123458999999
Q ss_pred CCEEEEEEC--CCeEEEEeCCCCceEEE-EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecc
Q psy6522 258 NILLAAGTV--DKTIRIWNLQTLAPISV-LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHE 334 (1407)
Q Consensus 258 g~lLaSgs~--DGtIrVWDl~tg~~v~~-l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~ 334 (1407)
|++|+++.. ++.|.++| .+++.+.. +... + ++.+.|.+ ...+++.+.||.+.+++. ++.........
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~---~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~- 205 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGA---PSTFYLLCAQGGLAKTDH-AGGAAGAGLVG- 205 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCC---CceEEEEcCCCCEEEEEC-CCcEEEEEecc-
Confidence 999998874 47899999 99988877 5432 2 24455543 256777888999999999 65433111100
Q ss_pred ccccccccCCCCcc-eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee----------cCCCcceEEEcCCC
Q psy6522 335 PVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDSIQWSHSH 403 (1407)
Q Consensus 335 ~~~~~~~~~~h~~~-I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~----------h~~~V~sIafSpdg 403 (1407)
+. . ..... .....+.+++..++..+..+.+.+.|+... ....+..+.- .......+.+++++
T Consensus 206 ~~-----~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~-~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 206 AM-----L-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA-GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred cc-----c-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCC-cceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 00 0 11111 123456666555554456788999998432 1111122211 11223347889999
Q ss_pred CEEEEEeC----------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCC
Q psy6522 404 LRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNF 472 (1407)
Q Consensus 404 ~~LaSgs~----------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG 472 (1407)
..|+++.. .+.|.++|+.+++...... .......++|++||+ .++++...++
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----------------~g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----------------LGHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----------------CCCCcCeEEECCCCCeEEEEEcCCCC
Confidence 88877653 3579999998877544221 122467899999999 6666663489
Q ss_pred eEEEEECCCCceEEEE
Q psy6522 473 QIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 473 ~I~IWDl~tg~~l~~l 488 (1407)
.|.+||+.+++.+..+
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998874
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.20 E-value=5.5e-09 Score=125.93 Aligned_cols=254 Identities=9% Similarity=0.004 Sum_probs=165.9
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--eEEEEeCCCCceE
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIRIWNLQTLAPI 281 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DG--tIrVWDl~tg~~v 281 (1407)
-....+|+|+++|+++++...++.|++||..++.+...+..... .. ++|++++.+|+++..++ .|.+|+..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35688999999999888777789999999988877666554333 33 99999999999888766 7999998766554
Q ss_pred EEE----eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcc--eEEEEEC
Q psy6522 282 SVL----VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH--ILCSSFS 355 (1407)
Q Consensus 282 ~~l----~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~--I~~vafS 355 (1407)
..+ ..+...+.+++++|+. ..|+++..++.|..||..+.... ...... ....... ...++|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~----g~lyv~d~~~~I~~~d~~~~~~~--~~~~~~------~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETE----EWLYFVDSNKNFGRFNVKTQEVT--LIKQLE------LSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTS----SEEEEECTTCEEEEEETTTCCEE--EEEECC------CCSCCCCSSCCEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCC----CeEEEEECCCcEEEEECCCCCEE--EEeccc------ccCCCCCCccccEEEe
Confidence 444 2244567889999843 44555777889999998765311 110000 0001111 1289999
Q ss_pred CC-CceEEEeeCCceEEEEeccCCCCCceeEEEeecC---------------CCcceEEEcCCCCEEEEEe-CCCeEEEE
Q psy6522 356 PG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHS---------------DKVDSIQWSHSHLRFVSGS-RDGTALIW 418 (1407)
Q Consensus 356 pd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~---------------~~V~sIafSpdg~~LaSgs-~DGtI~IW 418 (1407)
|+ +.++++...++.|+.|+.+.. +..+.++. .....|+++++|.++++-+ .++.|+.|
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 94 666666677889999987432 22222322 3467899999999777777 88999999
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
++.++....+.-.... .....-............+++++++.++++-.. ++.|+.+++
T Consensus 351 ~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-GKAIRKYAV 408 (409)
T ss_dssp ETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-TCEEEEEEE
T ss_pred ECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEEEcCCCCEEEEECC-CCeEEEEEe
Confidence 9877764433211000 000000001112346788999999655555444 788887764
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=1.6e-09 Score=129.26 Aligned_cols=174 Identities=6% Similarity=-0.033 Sum_probs=134.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------EEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEe
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-----------LLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN 274 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~-----------~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWD 274 (1407)
.++.+++++...+|++|+.++ ++||++.+.. ..... .+.+ |++|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999885 6669875433 11223 3666 999999 99999999 789999999
Q ss_pred CCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEE
Q psy6522 275 LQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 354 (1407)
Q Consensus 275 l~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vaf 354 (1407)
+.+......+..|...|.++.+.+ ..+++++.||.|.+||+..+.... +...|.|++|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~------p~~av~~~dG~L~v~dl~~~~~~~----------------~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVN------NTLVILNSVNDLSALDLRTKSTKQ----------------LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCEEE----------------EEESEEEEEE
T ss_pred chhhhccCccceeecceeeEEecC------CCEEEEECCCCEEEEEccCCcccc----------------ccCCceEEEE
Confidence 988777777778888899888776 238889999999999998763321 1257999999
Q ss_pred CCCCceEEEeeCCceEEEEeccCCCCCceeEEE------e---ecCCCcceEEEcCCCCEEEEEe
Q psy6522 355 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEV------E---EHSDKVDSIQWSHSHLRFVSGS 410 (1407)
Q Consensus 355 Spdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l------~---~h~~~V~sIafSpdg~~LaSgs 410 (1407)
||+| ++.|..||.|++|+...... .....+ . +|...|.+|+|.+++.+|++-.
T Consensus 171 SpkG--~~vg~~dg~i~~~~~~~~~~-~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 171 TNSQ--LAVLLKDRSFQSFAWRNGEM-EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp CSSE--EEEEETTSCEEEEEEETTEE-EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCc--eEEEEcCCcEEEEcCCCccc-cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999 67899999999998843221 002223 2 3678899999999999887743
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.18 E-value=2e-08 Score=114.96 Aligned_cols=235 Identities=9% Similarity=0.035 Sum_probs=155.8
Q ss_pred EEcCCCCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC
Q psy6522 199 VNLGHLSAVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT 277 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG-~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t 277 (1407)
.+..+..-.-+..|++++ .++++...++.|..||..++.. ..+. +...+.+++++++|+++++ . ++.|.+||..+
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 344445556789999964 5566666788999999988765 3333 4578999999999996655 3 56899999988
Q ss_pred CceEEEEecc----CCceEEEEeccCCCCCceEEEEEecC---------CceeEEeeccccccceeeeccccccccccCC
Q psy6522 278 LAPISVLVGH----QGIITGVNFCPLEVNGFNYLASTSTD---------GCIGFWKYKLDIDISKTVFHEPVMFNERIRP 344 (1407)
Q Consensus 278 g~~v~~l~~H----~~~VtsLafspd~~~~~~~LaSgs~D---------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~ 344 (1407)
++........ ...++.+++.|++ .++++.... ....+|.+...........
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG----~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------------ 146 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAG----RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD------------ 146 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTS----CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE------------
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCC----CEEEecCCcccccccccCCCcEEEEEECCCCEEEEee------------
Confidence 7654333221 2357889999876 655544322 2345666553321111110
Q ss_pred CCcceEEEEECCCCceEEE-eeCCceEEEEecc-CCCCC---ceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEE
Q psy6522 345 GNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMD-GVDSP---LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWY 419 (1407)
Q Consensus 345 h~~~I~~vafSpdg~~Las-gs~DG~I~IwDl~-~~~~~---~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWD 419 (1407)
+......++|+|+++.|++ .+.++.|.+|+++ ..... ..+..+..+.+....++++++|.+.++....+.|.+||
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 1134578999999987654 4557889999984 11211 11222233446678999999998888888888999999
Q ss_pred ccCCceEEeeeccCcCCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy6522 420 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 469 (1407)
Q Consensus 420 l~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS-pdg~~Lasgs~ 469 (1407)
..+++...... .....+++++|. |+++.|++++.
T Consensus 227 ~~tG~~~~~i~----------------~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 227 PVTGKRLQTVK----------------LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTTCCEEEEEE----------------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEEE----------------CCCCCceEEEEeCCCCCEEEEEcC
Confidence 98777544221 123468999998 88888887775
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=3.7e-09 Score=135.71 Aligned_cols=327 Identities=9% Similarity=-0.012 Sum_probs=198.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCC-----------eEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE-----------ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 216 G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~-----------ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
+..|++++.++.|..+|..+|+.+..+...... ...+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 557777888899999999999999888643210 112333 4568888899999999999999999888
Q ss_pred ecc-C----CceEEEEeccCCCCCceEEEEEec------CCceeEEeeccccccceeeeccccc---c--------cccc
Q psy6522 285 VGH-Q----GIITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVM---F--------NERI 342 (1407)
Q Consensus 285 ~~H-~----~~VtsLafspd~~~~~~~LaSgs~------DGtI~vWDl~t~~~~~~~~~~~~~~---~--------~~~~ 342 (1407)
..+ . ..+.+ .|.- .+ ..+++++. +|.|..||..+++.+.......+.. + ....
T Consensus 155 ~~~~~~~~~~~~~~---~p~v-~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 155 NTFEGQKGSLTITG---APRV-FK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp ETTTTCCSSCBCCS---CCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred cCCcCcCcCccccc---CcEE-EC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 755 2 11111 1110 01 34555543 6899999999886654443221110 0 0000
Q ss_pred C---------CCCcceEEEEECCCCceEEEeeCCc-------------------eEEEEeccCCCCCceeEEEe--ecC-
Q psy6522 343 R---------PGNAHILCSSFSPGGLFLATGSGDH-------------------HVRVYKMDGVDSPLGILEVE--EHS- 391 (1407)
Q Consensus 343 ~---------~h~~~I~~vafSpdg~~Lasgs~DG-------------------~I~IwDl~~~~~~~~i~~l~--~h~- 391 (1407)
. .+......+++++++.+|++++.++ .|..+|..+. ..+..+. .|.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~ 306 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDN 306 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcc
Confidence 0 1112223578889888888887765 4788887433 2232222 221
Q ss_pred ------CCcceEEEcCCC---CEEEEEeCCCeEEEEEccCCceEEeeeccCcC------CCCCcc-------------cc
Q psy6522 392 ------DKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LPHTKE-------------TS 443 (1407)
Q Consensus 392 ------~~V~sIafSpdg---~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~------~~~~~~-------------~~ 443 (1407)
.....+....+| ..|++++.+|.|+++|..+++.+......... ...... ..
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 112222333466 57899999999999999999865432110000 000000 00
Q ss_pred ccccccccEEEEEECCCCCEEEEEEec------------------------------------------CCeEEEEECCC
Q psy6522 444 DETNKKIKVTMVAWDASDRWVITAINF------------------------------------------NFQIKIWDAFN 481 (1407)
Q Consensus 444 ~~~~~~~~VtslafSpdg~~Lasgs~~------------------------------------------DG~I~IWDl~t 481 (1407)
........-..++++|++.++++.... .|.|..||+.+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 000000011257888998888876541 27899999999
Q ss_pred CceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEE
Q psy6522 482 GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 560 (1407)
Q Consensus 482 g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsg 560 (1407)
++.+..+.. ...+....+.. .+.+++.++.||.|++||+.++ +.+..+.. . ......-+.|..+|+.+++.
T Consensus 467 G~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG--~~lw~~~~--~--~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 467 QKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATG--EKLWEAPT--G--TGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp TEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEEC--S--SCCCSCCEEEEETTEEEEEE
T ss_pred CcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCC--ceeeeeeC--C--CCcccCCEEEEeCCEEEEEE
Confidence 999888763 33444455666 6788888999999999999999 77776651 1 11222345667888755443
No 212
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=2e-07 Score=109.94 Aligned_cols=301 Identities=10% Similarity=-0.021 Sum_probs=186.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCC---------CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEec
Q psy6522 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCS---------GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 286 (1407)
Q Consensus 216 G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~---------~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~ 286 (1407)
+..|++++.++.|..+|..+|+.+..+.... ..+.+. ...++..|++++.++.|..+|..+|+.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 6678888889999999999999987776422 223222 222455788888999999999999998877765
Q ss_pred cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC
Q psy6522 287 HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG 366 (1407)
Q Consensus 287 H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~ 366 (1407)
............ ..+++++.++.|..+|..++..........+... ...... .... +..+++++.
T Consensus 132 ~~~~~~~p~~~~------~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~---~~~~~~----~~~~--~~~v~~g~~ 196 (376)
T 3q7m_A 132 AGEALSRPVVSD------GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS---LRGESA----PTTA--FGAAVVGGD 196 (376)
T ss_dssp SSCCCSCCEEET------TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCC----CEEE--TTEEEECCT
T ss_pred CCceEcCCEEEC------CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee---ecCCCC----cEEE--CCEEEEEcC
Confidence 433222222221 5788888999999999988755443332211100 000011 1111 346777888
Q ss_pred CceEEEEeccCCCCCceeEEEeecC--CC--------c-ceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcC
Q psy6522 367 DHHVRVYKMDGVDSPLGILEVEEHS--DK--------V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC 435 (1407)
Q Consensus 367 DG~I~IwDl~~~~~~~~i~~l~~h~--~~--------V-~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~ 435 (1407)
++.|..+|..+.. .+....... +. + ....+ .+..++.++.+|.+..+|..+++......
T Consensus 197 ~g~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----- 266 (376)
T 3q7m_A 197 NGRVSAVLMEQGQ---MIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRE----- 266 (376)
T ss_dssp TTEEEEEETTTCC---EEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEEC-----
T ss_pred CCEEEEEECCCCc---EEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeecc-----
Confidence 8999999984322 222221110 00 1 11111 24577888889999999999887543211
Q ss_pred CCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec-CCCCeEEEEEecCCCCEEEEEeCC
Q psy6522 436 LPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG-HTNEVFVLESHPFDSRVLLSAGHD 514 (1407)
Q Consensus 436 ~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g-H~~~V~sLafsP~dg~~LaSgs~D 514 (1407)
......+.. ++..|++++. ++.|..+|..+++.+..... ....+...... +..|+.++.+
T Consensus 267 -------------~~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~ 327 (376)
T 3q7m_A 267 -------------LGSVNDFIV--DGNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSE 327 (376)
T ss_dssp -------------CCCEEEEEE--ETTEEEEEET-TCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTT
T ss_pred -------------CCCCCCceE--ECCEEEEEcC-CCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCC
Confidence 011222333 3667777777 89999999999998877662 22233333332 4678888999
Q ss_pred CcEEEEECCCCCccceeeeeeeecCCCCCcee-EEEECCCCCEEEEEeCCCeEEEEE
Q psy6522 515 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALF-DGKWSPDGTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 515 G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~-slafSpDG~~LAsgs~DG~I~Iwd 570 (1407)
|.|.++|..++ +.+..+. . ....+. .... .+..|++++.+|.|+.|+
T Consensus 328 g~l~~~d~~tG--~~~~~~~--~---~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 328 GYLHWINVEDG--RFVAQQK--V---DSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SEEEEEETTTC--CEEEEEE--C---CTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CeEEEEECCCC--cEEEEEe--c---CCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 99999999998 5444443 1 011121 1122 256788889999999886
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.12 E-value=8.3e-09 Score=124.55 Aligned_cols=261 Identities=9% Similarity=-0.037 Sum_probs=175.4
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCcEEEEEeCC-------CCCeEEEEEc
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIAID 255 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS----------~DG~V~IWDl~tg~~l~tl~gH-------~~~ItsLafS 255 (1407)
..+.+.++.--..+ .++++|||++|+++. .++.|.++|..+++.+.++.-. ......++|+
T Consensus 108 t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s 185 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT 185 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC
T ss_pred CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc
Confidence 34445555433345 899999999888876 3678999999999999887521 2345678999
Q ss_pred CCCCEEEEEEC--CCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec
Q psy6522 256 NRNILLAAGTV--DKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333 (1407)
Q Consensus 256 pDg~lLaSgs~--DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~ 333 (1407)
|||++|+++.. ++.|.|.|+.+++.+..+.-.. +....|.+ ...+++.+.||.+.+.++..++......
T Consensus 186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g---~~~~v~~~~dG~~~~V~~~~~~v~~~~~-- 256 (426)
T 3c75_H 186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPAS---PTVFYMNCRDGSLARVDFADGETKVTNT-- 256 (426)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEE---TTEEEEEETTSSEEEEECCTTCCEEEEC--
T ss_pred CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCC---CcEEEEEcCCCCEEEEECCCCcEEEEee--
Confidence 99999998874 5789999999999988876422 12334432 2566777788888888874442221100
Q ss_pred cccccccccCCCCcc-eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe----------ecCCCcceEEEcCC
Q psy6522 334 EPVMFNERIRPGNAH-ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE----------EHSDKVDSIQWSHS 402 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~-I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~----------~h~~~V~sIafSpd 402 (1407)
..+...... ...+.|.+++..++..+..+.|.+.|+.... ...+..+. ........++++++
T Consensus 257 ------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~-~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 257 ------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG-ATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp ------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC-EEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred ------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc-eEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 000000111 1235678888877777778899999984321 11111110 01122334789999
Q ss_pred CCEEEEEeC----------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecC
Q psy6522 403 HLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFN 471 (1407)
Q Consensus 403 g~~LaSgs~----------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~D 471 (1407)
+.++++... ++.|.++|+.+.+...... .......++|++|++ .++++...+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-----------------vg~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-----------------LGHEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----------------EEEEECEEEECCSSSCEEEEEETTT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-----------------CCCCcCeEEEccCCCEEEEEEcCCC
Confidence 887776642 3579999999887554321 123577899999999 888887558
Q ss_pred CeEEEEECCCCceEEEE
Q psy6522 472 FQIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 472 G~I~IWDl~tg~~l~~l 488 (1407)
+.|.++|+.+++.+.++
T Consensus 393 ~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 393 QTLHIYDAATGEELRSV 409 (426)
T ss_dssp TEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEe
Confidence 99999999999999887
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.11 E-value=4.9e-08 Score=111.73 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=153.4
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec
Q psy6522 244 GCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK 322 (1407)
Q Consensus 244 gH~~~ItsLafSpD-g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~ 322 (1407)
.+..-.-+..|+++ +.++++...++.|..||..++... .+ .....+.++++++++ .+++ +. +..|.+||..
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG----~l~v-~~-~~~l~~~d~~ 81 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSG----GYVA-TI-GTKFCALNWK 81 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTS----SEEE-EE-TTEEEEEETT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCC----CEEE-EE-CCeEEEEECC
Confidence 34445568899995 456666667899999999887652 33 245678999999976 5444 44 5678999987
Q ss_pred cccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC---------ceEEEEeccCCCCCceeEEEeecCCC
Q psy6522 323 LDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------HHVRVYKMDGVDSPLGILEVEEHSDK 393 (1407)
Q Consensus 323 t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D---------G~I~IwDl~~~~~~~~i~~l~~h~~~ 393 (1407)
++......... .......+..++++|+|+++++.... ....||.++.... +..+..+...
T Consensus 82 ~g~~~~~~~~~--------~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---~~~~~~~~~~ 150 (297)
T 3g4e_A 82 EQSAVVLATVD--------NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH---VKKYFDQVDI 150 (297)
T ss_dssp TTEEEEEEECC--------TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC---EEEEEEEESB
T ss_pred CCcEEEEEecC--------CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC---EEEEeecccc
Confidence 65321111000 00112457899999999976654321 2345555532222 2223334455
Q ss_pred cceEEEcCCCCEEE-EEeCCCeEEEEEc--cCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy6522 394 VDSIQWSHSHLRFV-SGSRDGTALIWYY--KCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 470 (1407)
Q Consensus 394 V~sIafSpdg~~La-Sgs~DGtI~IWDl--~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~ 470 (1407)
...++|+|+++.|+ +.+.++.|.+|++ .++....... .............++++++|.+.++...
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~-----------~~~~~~~~~~p~g~~~d~~G~lwva~~~- 218 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS-----------VYKLEKEEQIPDGMCIDAEGKLWVACYN- 218 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE-----------EEECCGGGCEEEEEEEBTTSCEEEEEET-
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE-----------EEECCCCCCCCCeeEECCCCCEEEEEcC-
Confidence 67899999998664 4556789999987 4444321100 0001112345678999999976666555
Q ss_pred CCeEEEEECCCCceEEEEecCCCCeEEEEEe-cCCCCEEEEEe
Q psy6522 471 NFQIKIWDAFNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAG 512 (1407)
Q Consensus 471 DG~I~IWDl~tg~~l~~l~gH~~~V~sLafs-P~dg~~LaSgs 512 (1407)
++.|.+||..+++++..+..+...+++++|. | +++.|+.++
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSSBEEEEEEESG-GGCEEEEEE
T ss_pred CCEEEEEcCCCceEEEEEECCCCCceEEEEeCC-CCCEEEEEc
Confidence 7899999999999999999888889999998 7 666554444
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.10 E-value=1.3e-08 Score=116.78 Aligned_cols=235 Identities=8% Similarity=-0.045 Sum_probs=150.3
Q ss_pred EcCCCCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q psy6522 200 NLGHLSAVFCVLFDKLGE-VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 200 L~GH~~~V~~vafSpdG~-~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg 278 (1407)
+..+.....+.+|+++|+ +++++..++.|..|+. ++. +..+..+...+..++++++|+++++...++.|.+|+.. +
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 344556678999999998 6667777899999998 555 45566677889999999999977766666889999986 5
Q ss_pred ceEEEEecc----CCceEEEEeccCCCCCceEEEE----Eec-------------CCceeEEeeccccccceeeeccccc
Q psy6522 279 APISVLVGH----QGIITGVNFCPLEVNGFNYLAS----TST-------------DGCIGFWKYKLDIDISKTVFHEPVM 337 (1407)
Q Consensus 279 ~~v~~l~~H----~~~VtsLafspd~~~~~~~LaS----gs~-------------DGtI~vWDl~t~~~~~~~~~~~~~~ 337 (1407)
+........ ...+.++++.+++ .++++ |.. .+.|..||..++......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG----~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------- 185 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDG----AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------- 185 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTS----CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-------
T ss_pred CEEEEEeccCCCccCCCCCEEECCCC----CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-------
Confidence 533222111 1346789999876 66665 322 234555555444211110
Q ss_pred cccccCCCCcceEEEEECCCCceEEEeeCC------ceEEEEeccCCCCCceeEEE-eecCCCcceEEEcCCCCEEEEEe
Q psy6522 338 FNERIRPGNAHILCSSFSPGGLFLATGSGD------HHVRVYKMDGVDSPLGILEV-EEHSDKVDSIQWSHSHLRFVSGS 410 (1407)
Q Consensus 338 ~~~~~~~h~~~I~~vafSpdg~~Lasgs~D------G~I~IwDl~~~~~~~~i~~l-~~h~~~V~sIafSpdg~~LaSgs 410 (1407)
.......++|+|+++.|+++... +.|.+|++.... ......+ ....+....|+++++|++. +++
T Consensus 186 -------~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~ 256 (305)
T 3dr2_A 186 -------DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSS 256 (305)
T ss_dssp -------EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECC
T ss_pred -------cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-Eec
Confidence 11345789999999988777665 689999985332 1111111 1124456789999999844 444
Q ss_pred CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy6522 411 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 478 (1407)
Q Consensus 411 ~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWD 478 (1407)
.+ .|.+|+........+. ....+.+++|+++++.|++++. + .|..++
T Consensus 257 ~~-gv~~~~~~g~~~~~~~------------------~~~~~~~~~f~~d~~~L~it~~-~-~l~~~~ 303 (305)
T 3dr2_A 257 GT-GVCVFDSDGQLLGHIP------------------TPGTASNCTFDQAQQRLFITGG-P-CLWMLP 303 (305)
T ss_dssp SS-EEEEECTTSCEEEEEE------------------CSSCCCEEEECTTSCEEEEEET-T-EEEEEE
T ss_pred CC-cEEEECCCCCEEEEEE------------------CCCceeEEEEeCCCCEEEEEcC-C-eEEEEE
Confidence 44 4999987533222111 1113677999999998888875 4 444444
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.08 E-value=5.1e-08 Score=117.46 Aligned_cols=256 Identities=10% Similarity=0.039 Sum_probs=160.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCC--ceeEEeeccc
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLD 324 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DG--tI~vWDl~t~ 324 (1407)
.....|+|+++++++++...++.|++||+.++........... .. ++|++++ ..|+++..++ .|.+|+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g----~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDK----QRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTS----SEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCC----CcEEEEecCCCceEEEEEcCCC
Confidence 3678999999999888877789999999998776665554332 33 8999976 7888888766 6777776554
Q ss_pred cccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEE--EeecCCCc--ceEEEc
Q psy6522 325 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE--VEEHSDKV--DSIQWS 400 (1407)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~--l~~h~~~V--~sIafS 400 (1407)
....... . ........+.+++++|++..|+++..++.|..|+..... ...+.. ..++.... ..|+|+
T Consensus 205 ~~~~~~g-~-------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 205 WAPTRIG-Q-------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp TCEEEEE-E-------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-EEEEEECCCCSCCCCSSCCEEEEE
T ss_pred ceeEEee-e-------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-EEEEecccccCCCCCCccccEEEe
Confidence 2211110 0 001122556789999954455557778899999984332 111100 11222222 389999
Q ss_pred CC-CCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 401 HS-HLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 401 pd-g~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
|+ +.++++-..++.|+.|+..... ... ..... ......-............++++++|.++++-...++.|+.|++
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~~-~~~-~g~~~-~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGEC-EWF-CGSAT-QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCE-EEE-EECTT-CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred CCCCEEEEEeCCCCEEEEEecCCCE-EEE-EeCCC-CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence 95 5556666678899999876542 111 11100 00000000001112357889999999955554404899999998
Q ss_pred CCCceEEEEecC---------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 480 FNGDLVQVLKGH---------------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 480 ~tg~~l~~l~gH---------------~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
.++.. ..+.++ -.....|++++ ++.++++-..++.|+.+++
T Consensus 353 ~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 353 LDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 77764 444444 24578999999 7888888778888887765
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.07 E-value=6.5e-09 Score=133.75 Aligned_cols=244 Identities=13% Similarity=0.035 Sum_probs=156.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEE-----CCCeEEEEEcCCCcEEEE-EeCCCCCeEEEEEcCCCCEEEEEECCC-------
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGA-----DDLLIKLWRARDGKLLAT-LRGCSGEISDIAIDNRNILLAAGTVDK------- 268 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS-----~DG~V~IWDl~tg~~l~t-l~gH~~~ItsLafSpDg~lLaSgs~DG------- 268 (1407)
+|...|..++|||||++||.+. ....|+|||+.+++.+.. +.+ .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 5667889999999999988543 235799999999986653 221 113567999 999999988774
Q ss_pred ------eEEEEeCCCCce--EEEEe--c-cCCceEEEEeccCCCCCceEEEEEec-C---CceeEEeeccccccceeeec
Q psy6522 269 ------TIRIWNLQTLAP--ISVLV--G-HQGIITGVNFCPLEVNGFNYLASTST-D---GCIGFWKYKLDIDISKTVFH 333 (1407)
Q Consensus 269 ------tIrVWDl~tg~~--v~~l~--~-H~~~VtsLafspd~~~~~~~LaSgs~-D---GtI~vWDl~t~~~~~~~~~~ 333 (1407)
.|++|++.+... ...+. . |...+.++.|+|++ .+|+.... + ..|.++|+.++........
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~- 277 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD----RFLLISAANSTSGNRLYVKDLSQENAPLLTVQ- 277 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS----CEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC----CEEEEEEccCCCCcEEEEEECCCCCCceEEEe-
Confidence 399999987653 23332 3 44557889999976 65544432 2 4788888766521111111
Q ss_pred cccccccccCCCCcceEEEEECCCCceEEEee-C---CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE
Q psy6522 334 EPVMFNERIRPGNAHILCSSFSPGGLFLATGS-G---DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG 409 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~---DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg 409 (1407)
.+....... ++++|..|+..+ . .+.|.++++.+. .......+..|...+. .|++++..|+..
T Consensus 278 ----------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 278 ----------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-GPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp ----------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-CGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred ----------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-CccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 111233333 556665555443 3 367888988543 2222334556666554 889999888776
Q ss_pred eCC-C--eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCCC
Q psy6522 410 SRD-G--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFNG 482 (1407)
Q Consensus 410 s~D-G--tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D----G~I~IWDl~tg 482 (1407)
..+ | .|++|++..+....+.+ .....+..+.+++++..|+.... + +.|+.||+.++
T Consensus 344 ~~~~g~~~l~~~d~~g~~~~~l~~----------------p~~~~~~~~~~~~d~~~l~~~~s-s~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGKRVREVAL----------------PGLGSVSGFNGKHDDPALYFGFE-NYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEETTEEEEEEECTTSCEEEEECC----------------SSSSEEEECCCCTTCSCEEEEEE-CSSSCCEEEEECTTTC
T ss_pred EEECCeeEEEEEECCCCeeEEeec----------------CCCceEEeeecCCCCCEEEEEec-CCCCCCEEEEEECCCC
Confidence 644 4 68888887554322211 12345667778889888877765 4 78999999877
Q ss_pred ce
Q psy6522 483 DL 484 (1407)
Q Consensus 483 ~~ 484 (1407)
+.
T Consensus 407 ~~ 408 (693)
T 3iuj_A 407 AI 408 (693)
T ss_dssp CE
T ss_pred eE
Confidence 64
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=3.2e-08 Score=127.19 Aligned_cols=332 Identities=10% Similarity=0.037 Sum_probs=196.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 216 G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~----------I-tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
+..|++++.++.|..+|..+|+.+..+..+... + ..+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 567888888999999999999999988643221 0 11222 3567888889999999999999998877
Q ss_pred ecc--CCceEEEEeccCCCCCceEEEEEe------cCCceeEEeeccccccceeeec--ccccc---------cccc---
Q psy6522 285 VGH--QGIITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFH--EPVMF---------NERI--- 342 (1407)
Q Consensus 285 ~~H--~~~VtsLafspd~~~~~~~LaSgs------~DGtI~vWDl~t~~~~~~~~~~--~~~~~---------~~~~--- 342 (1407)
... ......+..+|.- .+ ..+++++ .+|.|..||..+++.+...... .+... ....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred cCcCCCCCCccccCCcEE-EC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 642 1111112222211 01 3444443 3689999999988655443211 00000 0000
Q ss_pred -----CCCCcceEEEEECCCCceEEEeeCCce-------------------EEEEeccCCCCCceeEEEee--cC-----
Q psy6522 343 -----RPGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS----- 391 (1407)
Q Consensus 343 -----~~h~~~I~~vafSpdg~~Lasgs~DG~-------------------I~IwDl~~~~~~~~i~~l~~--h~----- 391 (1407)
..+......++++|++.+|++++.++. |..||..+. ..+..+.. |.
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCC
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCccccccc
Confidence 011111235788998889999888764 888988433 23333322 21
Q ss_pred --CCcceEEEcCCCC---EEEEEeCCCeEEEEEccCCceEEeeeccCcCC-------CCCcc----------------cc
Q psy6522 392 --DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCL-------PHTKE----------------TS 443 (1407)
Q Consensus 392 --~~V~sIafSpdg~---~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~-------~~~~~----------------~~ 443 (1407)
..+.......+|. .|+.++.+|.++++|..+++.+.......... ..... ..
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1111112223554 78889999999999999998653221000000 00000 00
Q ss_pred ccccccccEEEEEECCCCCEEEEEEec--------------------------------------------CCeEEEEEC
Q psy6522 444 DETNKKIKVTMVAWDASDRWVITAINF--------------------------------------------NFQIKIWDA 479 (1407)
Q Consensus 444 ~~~~~~~~VtslafSpdg~~Lasgs~~--------------------------------------------DG~I~IWDl 479 (1407)
........-..++++|+..++++.... +|.|..||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 000000011237888888888876431 378999999
Q ss_pred CCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCE-EE
Q psy6522 480 FNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT-CA 558 (1407)
Q Consensus 480 ~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~-LA 558 (1407)
.+|+.+..+..+.. +....+.. .+.+|++|+.||.|+.||..++ +.+..+.. .......-+.|+.||+. ++
T Consensus 463 ~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG--~~lw~~~~----~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 463 VKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTG--EKLWEQPA----ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEEC----SSCCCSCCEEEEETTEEEEE
T ss_pred CCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCC--ccceeeeC----CCCcccCceEEEECCEEEEE
Confidence 99999988876543 33334555 6789999999999999999999 66666551 11112233667788874 44
Q ss_pred EEeC
Q psy6522 559 LTDS 562 (1407)
Q Consensus 559 sgs~ 562 (1407)
+.+.
T Consensus 535 ~~~G 538 (689)
T 1yiq_A 535 FMAG 538 (689)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4433
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.03 E-value=1.5e-08 Score=130.43 Aligned_cols=245 Identities=11% Similarity=0.110 Sum_probs=154.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCc---
Q psy6522 244 GCSGEISDIAIDNRNILLAAGT-----VDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGC--- 315 (1407)
Q Consensus 244 gH~~~ItsLafSpDg~lLaSgs-----~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGt--- 315 (1407)
+|...|..++|||||++||.+. ....|+|||+.+++.+... .+......++|+ ++ +.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg----~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GN----EGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TT----TEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CC----CEEEEEEecCcccc
Confidence 3555788899999999888543 2357999999999865431 111113567899 87 77777777643
Q ss_pred ----------eeEEeeccccccceeeeccccccccccCC-CCcceEEEEECCCCceEEEeeC----CceEEEEeccCCCC
Q psy6522 316 ----------IGFWKYKLDIDISKTVFHEPVMFNERIRP-GNAHILCSSFSPGGLFLATGSG----DHHVRVYKMDGVDS 380 (1407)
Q Consensus 316 ----------I~vWDl~t~~~~~~~~~~~~~~~~~~~~~-h~~~I~~vafSpdg~~Lasgs~----DG~I~IwDl~~~~~ 380 (1407)
|.+|++.+........... .. +...+..+.|+|||++|+.... .+.|+++++.+...
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGA--------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESC--------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred cccccCCCcEEEEEECCCCcccceEEEec--------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 8888877653322222211 11 2234678999999998865433 35889999854321
Q ss_pred CceeEEEeecCCCcceEEEcCCCCEEEEEe-CC---CeEEEEEccCCce---EEeeeccCcCCCCCccccccccccccEE
Q psy6522 381 PLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD---GTALIWYYKCSQW---RFIRLDMNTCLPHTKETSDETNKKIKVT 453 (1407)
Q Consensus 381 ~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~D---GtI~IWDl~t~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~Vt 453 (1407)
....+..+....... |+++|..|+..+ .+ +.|.++++.++.. ..+ ..+...+.
T Consensus 272 --~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-----------------~~~~~~~~ 331 (693)
T 3iuj_A 272 --PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-----------------IPERQQVL 331 (693)
T ss_dssp --CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-----------------ECCCSSCE
T ss_pred --ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-----------------ecCCCCEE
Confidence 233445555555555 666666555444 33 5788888876542 111 11222233
Q ss_pred EEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEEe-cCCCCeEEEEEecCCCCEEEEEeCC----CcEEEEECCCCC
Q psy6522 454 MVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-GHTNEVFVLESHPFDSRVLLSAGHD----GLIIIWDILSSK 526 (1407)
Q Consensus 454 slafSpdg~~Lasgs~~DG--~I~IWDl~tg~~l~~l~-gH~~~V~sLafsP~dg~~LaSgs~D----G~V~IWDi~sgk 526 (1407)
.|++++++|+.....++ .|++||+..+ ....+. .+.+.+..+.+++ ++..|+....+ ++|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 78899999888877465 6899998754 444554 3445677788888 55544444333 789999998774
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.03 E-value=1.2e-08 Score=119.56 Aligned_cols=283 Identities=10% Similarity=0.024 Sum_probs=172.0
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCcEEEEE-------eCCCCCeEEEEEcCCCCEEEEE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGA--DDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNRNILLAAG 264 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS--~DG~V~IWDl~tg~~l~tl-------~gH~~~ItsLafSpDg~lLaSg 264 (1407)
++.+..+. ..+..|+++++|+++++.. .++.++||.+.++++. .+ .+|-..+..|+|+++++++++-
T Consensus 9 ~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D 84 (343)
T 2qe8_A 9 LEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD 84 (343)
T ss_dssp CEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE
T ss_pred eEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc
Confidence 44444444 6789999999999988864 2343566665556533 22 1345689999999999877765
Q ss_pred EC-----CCeEEEEeCCCCceEEEEecc------CCceEEEEeccCCCCCceEEEEEe---cCCceeEEeecccccccee
Q psy6522 265 TV-----DKTIRIWNLQTLAPISVLVGH------QGIITGVNFCPLEVNGFNYLASTS---TDGCIGFWKYKLDIDISKT 330 (1407)
Q Consensus 265 s~-----DGtIrVWDl~tg~~v~~l~~H------~~~VtsLafspd~~~~~~~LaSgs---~DGtI~vWDl~t~~~~~~~ 330 (1407)
.. ++.|.+||+.+++.+..+..+ ...+..+++.+++ +..+++.. .++.|.+||+.++......
T Consensus 85 ~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~---g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 85 NGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH---NFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp CHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT---TEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC---CEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 43 578999999999877766532 2346889998743 24555555 6789999998766322111
Q ss_pred eeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe
Q psy6522 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 410 (1407)
Q Consensus 331 ~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs 410 (1407)
..+ + ...+. . ..+.++|..+.+.+.++.+..|.. .+..|+|+|+++.|+++.
T Consensus 162 ~~~-~-----~~~~~--~---~~~~~~g~~~~~~~~~g~~~~~~~-----------------~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 162 QGY-P-----GIAPE--D---IDLVIDGVPVQIGQPDGTVIRPHL-----------------GVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp TTC-T-----TTSCC--S---CCCEETTEECBEECTTSCEECCCC-----------------CEEEEEECTTSCEEEEEE
T ss_pred cCC-C-----ccccc--c---cceeECCEEEEeccCCCceeceec-----------------ccceeEeccCCCEEEEEe
Confidence 000 0 00000 0 223346666666667776655532 246799999999888887
Q ss_pred CCCeEEEEEccCCceEEeeeccCcCCCCCcccc--ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEE
Q psy6522 411 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETS--DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVL 488 (1407)
Q Consensus 411 ~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l 488 (1407)
.++. ++|.+...... ........... ...+.......++++++|.++++... ++.|.+||..+++.....
T Consensus 214 ~~~~-~l~~~~~~~~~------~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~-~~~V~~~d~~~G~~~~~~ 285 (343)
T 2qe8_A 214 MHST-SMYRIKSADLS------NLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA-HSAIGVITSADRAYKLLV 285 (343)
T ss_dssp SSCS-EEEEEEHHHHT------CTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG-GTEEEEEETTTTEEEEEE
T ss_pred CCCC-eEEEEEHHHhc------CCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC-CCeEEEEECCCCCEEEEE
Confidence 7663 44443321100 00000000000 00011223456899999877666655 899999998667654433
Q ss_pred ec-CCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q psy6522 489 KG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIW 520 (1407)
Q Consensus 489 ~g-H~~~V~sLafsP~dg~~LaSgs~DG~V~IW 520 (1407)
.. +...+.+++|.+ ++.++++.+..+.+.+|
T Consensus 286 ~~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 286 TDEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECGGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ECCceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 32 245688999998 78888877655544433
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.00 E-value=8.6e-09 Score=122.35 Aligned_cols=269 Identities=12% Similarity=-0.011 Sum_probs=168.7
Q ss_pred eEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEeCCCCceEEEEecc-------CC
Q psy6522 227 LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----------VDKTIRIWNLQTLAPISVLVGH-------QG 289 (1407)
Q Consensus 227 ~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs----------~DGtIrVWDl~tg~~v~~l~~H-------~~ 289 (1407)
.|.|+|..+++.+.++.....+ .++++||+++|+++. .++.|.+||+.+++.+..+..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999855556 799999999888886 3689999999999999988643 12
Q ss_pred ceEEEEeccCCCCCceEEEEEec--CCceeE--EeeccccccceeeeccccccccccCCCCcceEEEEECCCC-ceEEEe
Q psy6522 290 IITGVNFCPLEVNGFNYLASTST--DGCIGF--WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATG 364 (1407)
Q Consensus 290 ~VtsLafspd~~~~~~~LaSgs~--DGtI~v--WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg-~~Lasg 364 (1407)
....++|+|++ ++|+++.. +..|.+ +|+.+ ....... + |+.+.|++ ..+++.
T Consensus 125 ~P~~ia~SpDG----k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-------------~---~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 125 RVHIIGNCASS----ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-------------S---CFHIHPGAAATHYLG 181 (368)
T ss_dssp CTTSEEECTTS----SCEEEEECSSSCEEEEEETTTEE---EEEEECS-------------S---CCCCEEEETTEEECC
T ss_pred CcceEEEcCCC----CEEEEEccCCCCeEEEEEEchhh---ceEEECC-------------C---ceEEccCCCeEEEEE
Confidence 35689999987 77777764 456888 88866 1111110 0 01122333 233444
Q ss_pred eCCceEEEEeccC----CCCCcee--EEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEee-eccCcCCC
Q psy6522 365 SGDHHVRVYKMDG----VDSPLGI--LEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR-LDMNTCLP 437 (1407)
Q Consensus 365 s~DG~I~IwDl~~----~~~~~~i--~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~-l~~~~~~~ 437 (1407)
+.||.+.+.++.. ....... ..+.-...+. . ++++..++..+. +.|.+.|+.+....... +....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~--- 253 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE--- 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC---
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc---
Confidence 5566666666632 0100000 0011112222 3 556666666566 89999998654322111 00000
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEe-c-------CCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCC-EE
Q psy6522 438 HTKETSDETNKKIKVTMVAWDASDRWVITAIN-F-------NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSR-VL 508 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~-~-------DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~-~L 508 (1407)
... ............++++++++.++++.. . ++.+.++|+.+++.+..+.... ....|+|+| |++ ++
T Consensus 254 -~~~-~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~-Dg~~l~ 329 (368)
T 1mda_H 254 -SGR-KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQ-DGASDN 329 (368)
T ss_dssp -THH-HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECC-SSSCEE
T ss_pred -ccc-cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECC-CCCEEE
Confidence 000 000001111122679999999987653 1 1356699999999988876544 578999999 776 67
Q ss_pred EEEe-CCCcEEEEECCCCCccceeeee
Q psy6522 509 LSAG-HDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 509 aSgs-~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
++.. .++.|.++|+.++ +.+..+.
T Consensus 330 va~~~~~~~VsVID~~t~--kvv~~I~ 354 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASD--QDQSSVE 354 (368)
T ss_dssp EEEETTTTEEEEEESSSC--EEEEECC
T ss_pred EEccCCCCeEEEEECCCC--cEEEEEE
Confidence 7777 5999999999998 6666654
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.99 E-value=8.5e-08 Score=110.09 Aligned_cols=240 Identities=12% Similarity=0.023 Sum_probs=154.5
Q ss_pred EEEEEeCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce
Q psy6522 238 LLATLRGCSGEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI 316 (1407)
Q Consensus 238 ~l~tl~gH~~~ItsLafSpDg~-lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI 316 (1407)
.+..+..+......++|+++++ +++++..++.|..|+. ++. +..+..+...+.++++.+++ .++++...++.|
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG----~l~v~~~~~~~v 109 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ----RLVHCEHGRRAI 109 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS----CEEEEETTTTEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC----CEEEEECCCCEE
Confidence 3444554556678899999998 6677777899999998 444 44555566778999999875 666665566789
Q ss_pred eEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE----eeC-------------CceEEEEeccCCC
Q psy6522 317 GFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT----GSG-------------DHHVRVYKMDGVD 379 (1407)
Q Consensus 317 ~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las----gs~-------------DG~I~IwDl~~~~ 379 (1407)
.+|+.. +. ......... ......+.+++++++|.++++ |.. .+.|..|+..+ .
T Consensus 110 ~~~~~~-g~-~~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g 179 (305)
T 3dr2_A 110 TRSDAD-GQ-AHLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-S 179 (305)
T ss_dssp EEECTT-SC-EEEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-C
T ss_pred EEECCC-CC-EEEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-C
Confidence 999875 32 111110000 001134667999999998886 332 24566666522 2
Q ss_pred CCceeEEEeecCCCcceEEEcCCCCEEEEEeCC------CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEE
Q psy6522 380 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 453 (1407)
Q Consensus 380 ~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D------GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vt 453 (1407)
....+ . .......++|+|+++.|+.+... +.|.+|++..+.......-.. .......
T Consensus 180 ~~~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------------~~~~~pd 242 (305)
T 3dr2_A 180 PLQRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS-------------VPDGLPD 242 (305)
T ss_dssp CCEEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC-------------CSSSCCC
T ss_pred cEEEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE-------------CCCCCCC
Confidence 22222 2 33456789999999988777665 789999987654211100000 0112234
Q ss_pred EEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCc
Q psy6522 454 MVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGL 516 (1407)
Q Consensus 454 slafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~ 516 (1407)
.++++++|++. ++.. + .|.+|+. .++.+..+..+. .+.+++|.+ +++.|+.++.++.
T Consensus 243 gi~~d~~G~lw-v~~~-~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l 299 (305)
T 3dr2_A 243 GFCVDRGGWLW-SSSG-T-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCL 299 (305)
T ss_dssp SEEECTTSCEE-ECCS-S-EEEEECT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEE
T ss_pred eEEECCCCCEE-EecC-C-cEEEECC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeE
Confidence 57899999844 4443 4 4999997 677888877665 588999998 8887877776643
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.98 E-value=2.5e-08 Score=118.36 Aligned_cols=265 Identities=6% Similarity=-0.129 Sum_probs=169.4
Q ss_pred ceeEEEEEcCCCCCEEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCcEEEEEeCC-------CCCeEEEEEc
Q psy6522 193 NLRQHYVNLGHLSAVFCVLFDKLGEVIVTGA----------DDLLIKLWRARDGKLLATLRGC-------SGEISDIAID 255 (1407)
Q Consensus 193 ~~~~~~~L~GH~~~V~~vafSpdG~~LaTGS----------~DG~V~IWDl~tg~~l~tl~gH-------~~~ItsLafS 255 (1407)
..+.+.++..-..+ .++|+|||++|+++. .++.|.+||+.+++.+.++..+ ......++|+
T Consensus 55 t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S 132 (368)
T 1mda_H 55 CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC 132 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC
T ss_pred CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc
Confidence 34555566433345 799999999999886 3678999999999999998643 1345689999
Q ss_pred CCCCEEEEEEC--CCeEEE--EeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc-----ccc
Q psy6522 256 NRNILLAAGTV--DKTIRI--WNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-----DID 326 (1407)
Q Consensus 256 pDg~lLaSgs~--DGtIrV--WDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t-----~~~ 326 (1407)
|||++|+++.. +..|.| +|+.+ +..+... +. +.+.|++ ...+++.+.||.+.+.++.. ++.
T Consensus 133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g---~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGA---AATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEE---TTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCC---CeEEEEEcCCCCEEEEECccccccCCeE
Confidence 99999998875 467888 99877 4444321 11 2234433 24566777889998888876 211
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee----------cCCCcce
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE----------HSDKVDS 396 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~----------h~~~V~s 396 (1407)
..... ..+.....+. + ++++..++..+. +.|.+.|+.... ...+..+.- .......
T Consensus 203 ~~~~t--------~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~-~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 203 GAQCT--------GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp CCCSC--------TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred EEEee--------eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCc-ceEEEEEEeccccccccccccCccee
Confidence 11000 0011112333 3 555555555555 899999984321 111111100 1122233
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEE
Q psy6522 397 IQWSHSHLRFVSGSR---------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITA 467 (1407)
Q Consensus 397 IafSpdg~~LaSgs~---------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasg 467 (1407)
++|++++..|+++.. ++.+.++|+.+.+..... ........++|++||+.++++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i-----------------~vg~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----------------SNGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC-----------------EEEEEECEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE-----------------ECCCCcceEEECCCCCEEEEE
Confidence 789999998876543 235669999988754321 122257889999999977666
Q ss_pred Ee-cCCeEEEEECCCCceEEEEecCCCCeEEEEEe
Q psy6522 468 IN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESH 501 (1407)
Q Consensus 468 s~-~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafs 501 (1407)
.. .++.|.++|+.+++.+..+..... ...+++.
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 65 489999999999999999875543 3455554
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.98 E-value=2.9e-07 Score=106.98 Aligned_cols=226 Identities=10% Similarity=-0.069 Sum_probs=145.1
Q ss_pred CEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 206 AVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 206 ~V~~vafSpdG-~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
-..+.+|+|++ .+++++..++.|.+||..+++.. .+. +...|.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 45678999975 45566667889999999887643 333 35689999999999887764 44 5999999887754332
Q ss_pred ec---c-CCceEEEEeccCCCCCceEEEEEecC----CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC
Q psy6522 285 VG---H-QGIITGVNFCPLEVNGFNYLASTSTD----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 285 ~~---H-~~~VtsLafspd~~~~~~~LaSgs~D----GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
.. . ...+.++++.|++ .++++...+ +...+|.+..+ ....... +......++|+|
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G----~l~v~~~~~~~~~~~~~l~~~~~g-~~~~~~~------------~~~~~~~i~~s~ 188 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSG----ALWIGTMGRKAETGAGSIYHVAKG-KVTKLFA------------DISIPNSICFSP 188 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTS----CEEEEEEETTCCTTCEEEEEEETT-EEEEEEE------------EESSEEEEEECT
T ss_pred eCCCCCCCCCCCCEEECCCC----CEEEEeCCCcCCCCceEEEEEeCC-cEEEeeC------------CCcccCCeEEcC
Confidence 21 1 2358899999975 555544322 23445554422 1111110 113457899999
Q ss_pred CCceEEEe-eCCceEEEEecc-CCC-CC---ceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q psy6522 357 GGLFLATG-SGDHHVRVYKMD-GVD-SP---LGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRL 430 (1407)
Q Consensus 357 dg~~Lasg-s~DG~I~IwDl~-~~~-~~---~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l 430 (1407)
+++.|+.+ +.++.|.+|++. ... .. ..+..+......+..++++++|.++++...++.|.+||.. ++.....
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i- 266 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY- 266 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE-
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEE-
Confidence 99876555 456899999984 111 11 1122222234556789999999877777777899999884 4432211
Q ss_pred ccCcCCCCCccccccccccccEEEEEEC-CCCCEEEEEEe
Q psy6522 431 DMNTCLPHTKETSDETNKKIKVTMVAWD-ASDRWVITAIN 469 (1407)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~VtslafS-pdg~~Lasgs~ 469 (1407)
......+++++|+ +++..|++++.
T Consensus 267 ---------------~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 267 ---------------EVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---------------ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---------------ECCCCCcEEEEEecCCCCEEEEEec
Confidence 0123458899998 88888877765
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.95 E-value=1.3e-08 Score=121.31 Aligned_cols=182 Identities=9% Similarity=0.045 Sum_probs=131.6
Q ss_pred ceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCce
Q psy6522 290 IITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHH 369 (1407)
Q Consensus 290 ~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~ 369 (1407)
.++.+++++.. .+|++|+.++ +.+|++.......... ....... ....... |..++| ++.+|+++ .++.
T Consensus 39 ~~nlLais~~~----gll~a~~~~~-l~v~~~~~l~~~~~~~-~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSK----SLFVAASGSK-AVVGELQLLRDHITSD-STPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTT----TEEEEEETTE-EEEEEHHHHHHHHHSS-SCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCC----CEEEEeCCCE-EEEEEhhHhhhhhccc-cccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 68899999876 8899999886 6669876543110000 0000000 1112335 999999 89999999 8899
Q ss_pred EEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccccccccc
Q psy6522 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 449 (1407)
Q Consensus 370 I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~ 449 (1407)
|++||+.... .......|...+.++.+.+. .+++++.||.|.+||+..+.... ..
T Consensus 108 l~v~dv~sl~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~--------------------~~ 162 (388)
T 1xip_A 108 LYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--------------------LA 162 (388)
T ss_dssp EEEEESSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--------------------EE
T ss_pred EEEEEchhhh---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc--------------------cc
Confidence 9999995433 33345667778888887765 38889999999999999776432 33
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCce--EEEE------e---cCCCCeEEEEEecCCCCEEEEE
Q psy6522 450 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL--VQVL------K---GHTNEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~--l~~l------~---gH~~~V~sLafsP~dg~~LaSg 511 (1407)
..|++++|||+| ++++.. ||.|++|+...+.+ ...+ . +|...|.+|.|.+ ++.+|++-
T Consensus 163 ~~Vs~v~WSpkG--~~vg~~-dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 163 QNVTSFDVTNSQ--LAVLLK-DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp ESEEEEEECSSE--EEEEET-TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred CCceEEEEcCCc--eEEEEc-CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 579999999999 566776 99999999887775 5666 3 4788999999999 77777764
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.94 E-value=7.7e-07 Score=103.40 Aligned_cols=231 Identities=11% Similarity=-0.003 Sum_probs=146.0
Q ss_pred eEEEEEcCCC-CEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccccc
Q psy6522 249 ISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 327 (1407)
Q Consensus 249 ItsLafSpDg-~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~ 327 (1407)
..+++|++++ .++++...++.|.+||..+++.. .+. ....+.+++|.+++ .++++ +.++ |.+||..++...
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg----~l~v~-~~~g-l~~~d~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS----KQLIA-SDDG-LFLRDTATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT----EEEEE-ETTE-EEEEETTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCC----eEEEE-ECCC-EEEEECCCCcEE
Confidence 4567899975 45666667789999999877643 332 34679999999875 66554 4444 888988765321
Q ss_pred ceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCC
Q psy6522 328 SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSH 403 (1407)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg 403 (1407)
. . .... .......+.+++++|+|+++++...+ +...||.++ ... +..+..+......++|++++
T Consensus 123 ~-~-~~~~------~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~---~~~~~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 123 L-H-AELE------SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK---VTKLFADISIPNSICFSPDG 190 (326)
T ss_dssp E-E-ECSS------TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE---EEEEEEEESSEEEEEECTTS
T ss_pred E-E-eeCC------CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc---EEEeeCCCcccCCeEEcCCC
Confidence 1 1 1100 00112468899999999876654321 223444443 121 22232334456789999999
Q ss_pred CEEEEE-eCCCeEEEEEcc--CC-ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 404 LRFVSG-SRDGTALIWYYK--CS-QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 404 ~~LaSg-s~DGtI~IWDl~--t~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
+.|+.+ +.++.|.+|++. ++ .... ................++++++|.+.++... ++.|.+||.
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~ 258 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDT 258 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECT
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEECCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECC
Confidence 876554 457899999986 44 3110 0000000112234577999999987666655 789999998
Q ss_pred CCCceEEEEecCCCCeEEEEEe-cCCCCEEEEEeC
Q psy6522 480 FNGDLVQVLKGHTNEVFVLESH-PFDSRVLLSAGH 513 (1407)
Q Consensus 480 ~tg~~l~~l~gH~~~V~sLafs-P~dg~~LaSgs~ 513 (1407)
+++.+..+..+...+++++|+ + ++..|+.++.
T Consensus 259 -~g~~~~~i~~~~~~~~~~af~g~-d~~~L~vt~~ 291 (326)
T 2ghs_A 259 -DGNHIARYEVPGKQTTCPAFIGP-DASRLLVTSA 291 (326)
T ss_dssp -TCCEEEEEECSCSBEEEEEEEST-TSCEEEEEEB
T ss_pred -CCCEEEEEECCCCCcEEEEEecC-CCCEEEEEec
Confidence 688888888787789999998 7 7666554443
No 227
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.90 E-value=7.3e-08 Score=112.83 Aligned_cols=224 Identities=12% Similarity=0.053 Sum_probs=150.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEEC-----CCeEEEEEcCCCcEEEEEeCC------CCCeEEEEEcCCCCE-EEEEE---
Q psy6522 201 LGHLSAVFCVLFDKLGEVIVTGAD-----DLLIKLWRARDGKLLATLRGC------SGEISDIAIDNRNIL-LAAGT--- 265 (1407)
Q Consensus 201 ~GH~~~V~~vafSpdG~~LaTGS~-----DG~V~IWDl~tg~~l~tl~gH------~~~ItsLafSpDg~l-LaSgs--- 265 (1407)
.+|...+.+|+|+++|+++++-.. ++.|.+||+.+++.+.++..+ ...+..|++++++.. +++..
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 357789999999999987666543 578999999999988777532 245789999986544 45544
Q ss_pred CCCeEEEEeCCCCceEEEEeccCCceE-EEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCC
Q psy6522 266 VDKTIRIWNLQTLAPISVLVGHQGIIT-GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRP 344 (1407)
Q Consensus 266 ~DGtIrVWDl~tg~~v~~l~~H~~~Vt-sLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~ 344 (1407)
.++.|.+||+.+++....+.+|..... ...+.+++ ..|.+.+.++.++.|.
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g----~~~~~~~~~g~~~~~~------------------------ 194 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG----VPVQIGQPDGTVIRPH------------------------ 194 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT----EECBEECTTSCEECCC------------------------
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECC----EEEEeccCCCceecee------------------------
Confidence 578999999998887777665532211 13344433 5666667777665552
Q ss_pred CCcceEEEEECCCCceEEEeeCCc-eEEEEeccC--CCC--Cc---eeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEE
Q psy6522 345 GNAHILCSSFSPGGLFLATGSGDH-HVRVYKMDG--VDS--PL---GILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 416 (1407)
Q Consensus 345 h~~~I~~vafSpdg~~Lasgs~DG-~I~IwDl~~--~~~--~~---~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~ 416 (1407)
..+..++|+|+|+.|+++...+ .|..++... ... .. ......++.+....++++++|.++++...++.|.
T Consensus 195 --~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~ 272 (343)
T 2qe8_A 195 --LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIG 272 (343)
T ss_dssp --CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEE
T ss_pred --cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEE
Confidence 2356799999999888887665 454444310 000 00 0012224556678899999999999988999999
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 469 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~ 469 (1407)
+||..+++...+.. .........++|.+++.++++...
T Consensus 273 ~~d~~~G~~~~~~~---------------~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 273 VITSADRAYKLLVT---------------DEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEETTTTEEEEEEE---------------CGGGSCEEEEEECTTSCEEEEECC
T ss_pred EEECCCCCEEEEEE---------------CCceecCCeeEECCCCcEEEEeCc
Confidence 99985555322211 012345788999999887776664
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.90 E-value=1.9e-08 Score=115.49 Aligned_cols=301 Identities=12% Similarity=0.016 Sum_probs=184.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccC
Q psy6522 209 CVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQ 288 (1407)
Q Consensus 209 ~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~ 288 (1407)
++.++.+|. |.+++.++.|..|| .+++.+..+..+...+.++.+.+++.+++ ++.+ |..+|. +++.+..+..+.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCC
Confidence 345555664 56667788899999 88888776655555667788877776444 4444 888886 555544333222
Q ss_pred CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc
Q psy6522 289 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH 368 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG 368 (1407)
..+....+. + ..|+.++.++.|..+|.. +........ ....+.++...+++. |.+++.++
T Consensus 98 ~~~~~~~~~-~-----~~l~v~t~~~~l~~~d~~-g~~~~~~~~------------~~~~~~~~~~~~~g~-l~vgt~~~ 157 (330)
T 3hxj_A 98 AIVSDFTIF-E-----DILYVTSMDGHLYAINTD-GTEKWRFKT------------KKAIYATPIVSEDGT-IYVGSNDN 157 (330)
T ss_dssp ---CCEEEE-T-----TEEEEECTTSEEEEECTT-SCEEEEEEC------------SSCCCSCCEECTTSC-EEEECTTS
T ss_pred CcccCceEE-C-----CEEEEEecCCEEEEEcCC-CCEEEEEcC------------CCceeeeeEEcCCCE-EEEEcCCC
Confidence 222223333 2 567888888989999877 432221111 112344556666666 55677788
Q ss_pred eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccc
Q psy6522 369 HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448 (1407)
Q Consensus 369 ~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~ 448 (1407)
.|..||.. ...+..+......+.++.+.+++.+++ ++ +.|..+| .++....... ..
T Consensus 158 ~l~~~d~~----g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~----------------~~ 213 (330)
T 3hxj_A 158 YLYAINPD----GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY----------------AG 213 (330)
T ss_dssp EEEEECTT----SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC----------------CS
T ss_pred EEEEECCC----CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc----------------cC
Confidence 99999873 223333444456678888888887544 44 7889998 5554332111 01
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCcc
Q psy6522 449 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQR 528 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~ 528 (1407)
...+.+++.+++|.. ++++. ++.|..+| .++..+..+......+..+.+.+ + ..|..++.+|.|..+|. ++ .
T Consensus 214 ~~~~~~~~~~~~g~l-~v~t~-~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d~-~g--~ 285 (330)
T 3hxj_A 214 YWTVTRPAISEDGTI-YVTSL-DGHLYAIN-PDGTEKWRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAINP-DG--T 285 (330)
T ss_dssp SCCCSCCEECTTSCE-EEEET-TTEEEEEC-TTSCEEEEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEECT-TS--C
T ss_pred CcceeceEECCCCeE-EEEcC-CCeEEEEC-CCCCEeEEeeCCCCccccceEcC-C-CeEEEecCCCCEEEECC-CC--c
Confidence 134566777777754 44554 77888887 46777766665544444555544 3 45777888889999996 55 3
Q ss_pred ceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 529 GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 529 ~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
.+..+. .....+.++...++|. |.+++.+|.+++.....
T Consensus 286 ~~~~~~-----~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 286 EKWNFE-----TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp EEEEEE-----CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred EEEEEE-----cCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 333333 1234566777778877 55688889998887654
No 229
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.88 E-value=7.8e-06 Score=106.66 Aligned_cols=368 Identities=10% Similarity=0.052 Sum_probs=219.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe
Q psy6522 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 285 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~ 285 (1407)
|.++..+++|.+.+ |+.++-|..|+..+++..... ..+...|.+|...+++.+.+ |+.++-|.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88999988886555 666555889998877654321 12356789998888886655 4444448889987765443322
Q ss_pred c-------cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 286 G-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 286 ~-------H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
. ....|.++...+++ .|..|+.+| |.+|+..+...... ...+ ..........|.++...++|
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g-----~lWigt~~G-l~~~~~~~~~~~~~--~~~~---~~~~~l~~~~i~~i~~D~~g 321 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQN-----RLWIGTFND-LNIYHEGTDSFASY--SSNP---VENGSLSQRSVRSIFMDSQG 321 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTS-----CEEEEESSC-EEEEETTTTEEEEE--CCCT---TSTTSCSSSCEEEEEECTTS
T ss_pred CCCCccccCCCeEEEEEEcCCC-----CEEEEeCCh-hheEcCCCCeEEEE--ecCC---CCCCCCCCCcEEEEEEeCCc
Confidence 2 13568888887654 355555554 88888765421111 0000 00011123679999999988
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEe----ecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCc
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVE----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNT 434 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~----~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~ 434 (1407)
.+ -+|+.++-|..|+.... ......... -....|.++...++|. |..|+.++-|..|+..++...........
T Consensus 322 ~l-Wigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~ 398 (795)
T 4a2l_A 322 GM-WLGTYFGGLNYYHPIRN-RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE 398 (795)
T ss_dssp CE-EEEESSSCEEEECGGGG-SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC---
T ss_pred CE-EEEECCCCeEEeCCCcc-cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC
Confidence 74 45666677888876321 111111000 0234688999888886 55677887899999887765443211000
Q ss_pred CCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe----cCCCCeEEEEEecCCCCEEEE
Q psy6522 435 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK----GHTNEVFVLESHPFDSRVLLS 510 (1407)
Q Consensus 435 ~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~----gH~~~V~sLafsP~dg~~LaS 510 (1407)
. ........|.+++.++++..|.+++. ++-|.+||..+++...... .+...|.++...+ ++.+.+.
T Consensus 399 ~--------~~~l~~~~v~~i~~d~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwig 468 (795)
T 4a2l_A 399 S--------ARGIGSNNIKAVYVDEKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLG 468 (795)
T ss_dssp -----------CCSCSCEEEEEEETTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEE
T ss_pred c--------ccCCCCccEEEEEEcCCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEE
Confidence 0 00012356889999888885666665 6779999998877544322 2345789998877 6665554
Q ss_pred EeCCCcEEEEECCCCCccceeeeeee--ecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccc-c------ccC
Q psy6522 511 AGHDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRP-Q------NIP 581 (1407)
Q Consensus 511 gs~DG~V~IWDi~sgk~~~l~~~~~~--~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~-~------~lp 581 (1407)
. . +-|.+||..+++. ..+... ........|.++...++|.+.+.+. +.|..|+..+++.. . .++
T Consensus 469 t-~-~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~l~ 541 (795)
T 4a2l_A 469 T-L-SALVRFNPEQRSF---TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILPVSNVT 541 (795)
T ss_dssp E-S-SCEEEEETTTTEE---EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSCSCGGG
T ss_pred e-c-CceeEEeCCCCeE---EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCCCCCCC
Confidence 4 4 4588999877621 112100 0012235789999999998766554 55888888766540 0 111
Q ss_pred ----CceEecCCCcEEEec-CCCeeeEeeCCCC
Q psy6522 582 ----RELFFHTDYRTLNRP-NGLFEPTYDEVTN 609 (1407)
Q Consensus 582 ----~~v~Fs~D~~~Lv~~-~~~~~~v~Dv~T~ 609 (1407)
..++..+++...+.. .+++ .||..+.
T Consensus 542 ~~~i~~i~~d~~g~lWigT~~Gl~--~~d~~~~ 572 (795)
T 4a2l_A 542 KLFTNCIYEASNGIIWVGTREGFY--CFNEKDK 572 (795)
T ss_dssp GSCEEEEEECTTSCEEEEESSCEE--EEETTTT
T ss_pred CCeeEEEEECCCCCEEEEeCCCce--eECCCCC
Confidence 134555667655533 3334 6776554
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.86 E-value=2.4e-06 Score=100.55 Aligned_cols=266 Identities=9% Similarity=0.022 Sum_probs=163.4
Q ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCce---
Q psy6522 215 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII--- 291 (1407)
Q Consensus 215 dG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~V--- 291 (1407)
++..|++++.++.|..+|..+|+.+..+...........+. +..|+.++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45678889999999999999999988776543322222232 4477788889999999999999888776433211
Q ss_pred --EEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccc--cccC-CCCcceEEEEECCCCceEEEeeC
Q psy6522 292 --TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFN--ERIR-PGNAHILCSSFSPGGLFLATGSG 366 (1407)
Q Consensus 292 --tsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~--~~~~-~h~~~I~~vafSpdg~~Lasgs~ 366 (1407)
...... ...+++++.++.|..+|..++..........+.... ..+. .....+ + .+..+++++.
T Consensus 180 ~~~~~~~~------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~~ 247 (376)
T 3q7m_A 180 GESAPTTA------FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----V--VNGVVFALAY 247 (376)
T ss_dssp CCCCCEEE------TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEEECT
T ss_pred CCCCcEEE------CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE----E--ECCEEEEEec
Confidence 111221 156788888999999999877544333222110000 0000 000111 1 2456777778
Q ss_pred CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccc
Q psy6522 367 DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446 (1407)
Q Consensus 367 DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~ 446 (1407)
++.|..+|..+.. .+.... ......+.. ++..|++++.+|.|..+|..+++.........
T Consensus 248 ~g~l~~~d~~tG~---~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~------------- 307 (376)
T 3q7m_A 248 NGNLTALDLRSGQ---IMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL------------- 307 (376)
T ss_dssp TSCEEEEETTTCC---EEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-------------
T ss_pred CcEEEEEECCCCc---EEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-------------
Confidence 8999999984322 222221 222334443 35678888899999999999887543221000
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q psy6522 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521 (1407)
Q Consensus 447 ~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWD 521 (1407)
...+..... .+..|++++. +|.|.++|..+|+.+..+......+.+.... .+..|+.++.+|.|+.|+
T Consensus 308 --~~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 308 --HRLLTSPVL--YNGNLVVGDS-EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp --TSCCCCCEE--ETTEEEEECT-TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred --CCcccCCEE--ECCEEEEEeC-CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 000111111 2467777777 8999999999999988877644444322122 246788889999999987
No 231
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.85 E-value=3.2e-05 Score=100.80 Aligned_cols=334 Identities=11% Similarity=0.035 Sum_probs=207.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q psy6522 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG-------CSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275 (1407)
Q Consensus 203 H~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~g-------H~~~ItsLafSpDg~lLaSgs~DGtIrVWDl 275 (1407)
+...|.++...++|.+.+ |+.++-|.+||..+++....... ....|.+|...++|.+.+. +.+ -|.+|+.
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~ 289 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHE 289 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEET
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcC
Confidence 456799999988886555 45443488999887765443222 1356999999988876654 445 5888998
Q ss_pred CCCceEEEEec-------cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcc
Q psy6522 276 QTLAPISVLVG-------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 348 (1407)
Q Consensus 276 ~tg~~v~~l~~-------H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~ 348 (1407)
.++........ ....|.+|...+++ .|..|+.++-|.+|+........ ....+. ........
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-----~lWigt~~~Gl~~~~~~~~~~~~--~~~~~~----~~~l~~~~ 358 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-----GMWLGTYFGGLNYYHPIRNRFKN--IRNIPY----KNSLSDNV 358 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-----CEEEEESSSCEEEECGGGGSSEE--ECCCTT----SSSCSCSS
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-----CEEEEECCCCeEEeCCCcccceE--EcCCCC----CCCCCCCe
Confidence 77654433211 23568888887754 46667777778888866542111 111000 00112356
Q ss_pred eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe------ecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccC
Q psy6522 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE------EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 349 I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~------~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t 422 (1407)
|.++...++|.+. +|+.++-|..|+.... ......... -....|.+++..+++..|..|+.++.|.+||..+
T Consensus 359 V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 359 VSCIVEDKDKNLW-IGTNDGGLNLYNPITQ-RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp EEEEEECTTSCEE-EEESSSCEEEECTTTC-CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred eEEEEECCCCCEE-EEECCCCeEEEcCCCC-cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 8999999888744 5677777888887322 111111000 1235688999888888577788878899999988
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec------CCCCeE
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVF 496 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g------H~~~V~ 496 (1407)
++....... . .......|.++...++|.+.+.+ . + -|.+||..+++....... +...|.
T Consensus 437 ~~~~~~~~~-~-----------~~l~~~~v~~i~~d~~g~lwigt-~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 437 GQVENFNQR-N-----------SQLVNENVYAILPDGEGNLWLGT-L-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp CCEEEECTT-T-----------SCCSCSCEEEEEECSSSCEEEEE-S-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred CcEEEeecC-C-----------CCcCCCeeEEEEECCCCCEEEEe-c-C-ceeEEeCCCCeEEEccccccccccCCceEE
Confidence 775543210 0 00134578899998888765544 3 4 488899887765433211 235789
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeee--eecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 497 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHN--IVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 497 sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~--~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
++...+ ++.+.+.. . +-|..||..++ .. .+.. ...+.....|.++...++|.+.+.+. . -|..|+..++
T Consensus 502 ~i~~d~-~g~lWigt-~-~Gl~~~~~~~~--~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 502 TLFRDS-HKRLWIGG-E-EGLSVFKQEGL--DI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp EEEECT-TCCEEEEE-S-SCEEEEEEETT--EE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred EEEECC-CCCEEEEe-C-CceEEEeCCCC--eE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 998887 67655544 4 56888998766 22 2210 01112345789999999998666544 3 5888888766
Q ss_pred cc
Q psy6522 575 KR 576 (1407)
Q Consensus 575 ~~ 576 (1407)
+.
T Consensus 573 ~~ 574 (795)
T 4a2l_A 573 QI 574 (795)
T ss_dssp EE
T ss_pred cE
Confidence 43
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=3.7e-07 Score=117.06 Aligned_cols=302 Identities=11% Similarity=0.084 Sum_probs=184.5
Q ss_pred CCEEEEEECCCeEEEEeCCCCceEEEEeccCCc-----------eEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 258 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI-----------ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 258 g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~-----------VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
+..|++++.++.|..+|..+|+.+..+...... ...+++. +..|++++.|+.|..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW------KGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE------TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE------CCEEEEEcCCCEEEEEECCCCCE
Confidence 446667777889999999999998887643210 0122332 26788889999999999998865
Q ss_pred cceeeec-cccccccccCCCCcceEEEEECCCCceEEEeeC------CceEEEEeccCCCCCceeEEEee----------
Q psy6522 327 ISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEE---------- 389 (1407)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~------DG~I~IwDl~~~~~~~~i~~l~~---------- 389 (1407)
....... .... ........+ +. ++ .+++++. ++.|+.||..+.. .+..+..
T Consensus 151 ~W~~~~~~~~~~---~~~~~~~p~----v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~---~~W~~~~~~~~~~~~~~ 218 (677)
T 1kb0_A 151 VWHQNTFEGQKG---SLTITGAPR----VF-KG-KVIIGNGGAEYGVRGYITAYDAETGE---RKWRWFSVPGDPSKPFE 218 (677)
T ss_dssp EEEEETTTTCCS---SCBCCSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCC---EEEEEESSCCCTTSCCS
T ss_pred EeeecCCcCcCc---CcccccCcE----EE-CC-EEEEEecccccCCCCEEEEEECCCCc---EEEEeccCCCCcccccc
Confidence 5444322 1000 000000111 11 33 4455443 6889999984332 2222211
Q ss_pred ----------------------cCCCcceEEEcCCCCEEEEEeCCC-------------------eEEEEEccCCceEEe
Q psy6522 390 ----------------------HSDKVDSIQWSHSHLRFVSGSRDG-------------------TALIWYYKCSQWRFI 428 (1407)
Q Consensus 390 ----------------------h~~~V~sIafSpdg~~LaSgs~DG-------------------tI~IWDl~t~~~~~~ 428 (1407)
.......+++++++.+|+.++.++ +|..+|..+++.+-.
T Consensus 219 ~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~ 298 (677)
T 1kb0_A 219 DESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH 298 (677)
T ss_dssp SHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred ccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE
Confidence 111224678999999998887764 599999999875543
Q ss_pred eeccCcCCCCCccccccccccccEEEEEECCCC---CEEEEEEecCCeEEEEECCCCceEEEEecCCC-----------C
Q psy6522 429 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAINFNFQIKIWDAFNGDLVQVLKGHTN-----------E 494 (1407)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg---~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~-----------~ 494 (1407)
....... . .... .......+....+| ..|+++.. +|.|+++|..+|+++..+..... .
T Consensus 299 ~~~~~~d-----~-wd~~-~~~~p~l~~~~~dG~~~~~l~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~ 370 (677)
T 1kb0_A 299 YQETPGD-----N-WDYT-STQPMILADIKIAGKPRKVILHAPK-NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKP 370 (677)
T ss_dssp EESSTTC-----C-SCCC-CCSCCEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCE
T ss_pred EecCCCc-----c-cccc-cCCCcEEEecccCCcEeeEEEEECC-CCEEEEEECCCCCEeccccccccCcccccCCCCce
Confidence 2110000 0 0000 01112222333467 56666666 99999999999999877653210 1
Q ss_pred e------------------------EEEEEecCCCCEEEEEeC-------------------------------------
Q psy6522 495 V------------------------FVLESHPFDSRVLLSAGH------------------------------------- 513 (1407)
Q Consensus 495 V------------------------~sLafsP~dg~~LaSgs~------------------------------------- 513 (1407)
+ ..++++| +..+|++...
T Consensus 371 ~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 449 (677)
T 1kb0_A 371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE 449 (677)
T ss_dssp EECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred eeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccc
Confidence 1 1467888 6677766543
Q ss_pred ------CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccCC-----
Q psy6522 514 ------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIPR----- 582 (1407)
Q Consensus 514 ------DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp~----- 582 (1407)
.|.|..||+.++ +.+..+. ....+....++.++.++++++.+|.+++||+.+|+.+..+..
T Consensus 450 ~~~~~~~g~l~A~D~~tG--~~~W~~~------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 521 (677)
T 1kb0_A 450 PPKSKPFGRLLAWDPVAQ--KAAWSVE------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV 521 (677)
T ss_dssp CCCSCCEEEEEEEETTTT--EEEEEEE------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCCCCCccEEEEEeCCCC--cEEeecC------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence 278999999998 5555443 123345556777888999999999999999999999766542
Q ss_pred --ceEecCCCcEEE
Q psy6522 583 --ELFFHTDYRTLN 594 (1407)
Q Consensus 583 --~v~Fs~D~~~Lv 594 (1407)
.+.|..+++..+
T Consensus 522 ~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 522 AAPSTYMVDGRQYV 535 (677)
T ss_dssp SCCEEEEETTEEEE
T ss_pred cCCEEEEeCCEEEE
Confidence 455666776554
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.84 E-value=4.7e-07 Score=116.39 Aligned_cols=302 Identities=12% Similarity=0.057 Sum_probs=180.9
Q ss_pred CCEEEEEECCCeEEEEeCCCCceEEEEeccCCc----------e-EEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 258 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGI----------I-TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 258 g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~----------V-tsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
+..|++++.++.|..+|..+|+.+..+..+... + ..+.+. ...|++++.|+.|..+|..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW------KGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE------CCEEEEEccCCEEEEEECCCCCE
Confidence 456777777889999999999998887643221 0 112221 25788899999999999998865
Q ss_pred cceeeec-cccccccccCCCCcceEEEEECCCCceEEEee------CCceEEEEeccCCCCCceeEEEe-----------
Q psy6522 327 ISKTVFH-EPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVE----------- 388 (1407)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs------~DG~I~IwDl~~~~~~~~i~~l~----------- 388 (1407)
....... .... ........+ + .++. +++++ .+|.|..||..+... +..+.
T Consensus 144 ~W~~~~~~~~~~---~~~~~~sP~----v-~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~---~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 144 AWSVDTRADHKR---SYTITGAPR----V-VNGK-VVIGNGGAEFGVRGYVTAYDAETGKE---AWRFYTVPGDPKLPPE 211 (689)
T ss_dssp EEEEECCSCTTS---CCBCCSCCE----E-ETTE-EEECCBCTTTCCBCEEEEEETTTCCE---EEEEESSCCCTTSCCC
T ss_pred eeeecCcCCCCC---CccccCCcE----E-ECCE-EEEEeCCCccCCCCEEEEEECCCCcE---EEEecccCCCcccccc
Confidence 5443321 1000 000000111 1 1444 44443 368899999854332 22221
Q ss_pred --------------------ecCCCcceEEEcCCCCEEEEEeCCCe-------------------EEEEEccCCceEEee
Q psy6522 389 --------------------EHSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIR 429 (1407)
Q Consensus 389 --------------------~h~~~V~sIafSpdg~~LaSgs~DGt-------------------I~IWDl~t~~~~~~~ 429 (1407)
++......+++++++.+|+.++.++. |..||..+++.+-..
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~ 291 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY 291 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence 11111236789998889999988764 999999999865432
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEEecCC-CC-----------
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT-NE----------- 494 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~---~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~-~~----------- 494 (1407)
...... ... ......+.......+|+ .|+.+.. +|.|+++|..+|+++....... ..
T Consensus 292 ~~~~~d------~wd-~~~~~~~~l~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~p 363 (689)
T 1yiq_A 292 QTTPGD------AWD-YTATQHMILAELPIDGKPRKVLMQAPK-NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRP 363 (689)
T ss_dssp ESSTTC------CSC-CCCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEE
T ss_pred ecCCcc------ccc-ccCCCCcEEEeeccCCcEEEEEEEECC-CCeEEEEECCCCCEeccccccccccccccCccCCCc
Confidence 110000 000 00111111122223554 5666665 9999999999999885433111 00
Q ss_pred ---------------------------eEEEEEecCCCCEEEEEeC----------------------------------
Q psy6522 495 ---------------------------VFVLESHPFDSRVLLSAGH---------------------------------- 513 (1407)
Q Consensus 495 ---------------------------V~sLafsP~dg~~LaSgs~---------------------------------- 513 (1407)
-..++++| +..+|++...
T Consensus 364 i~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 364 ILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred ccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 01267888 6666665532
Q ss_pred -----------CCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC-
Q psy6522 514 -----------DGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP- 581 (1407)
Q Consensus 514 -----------DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp- 581 (1407)
+|.|..||+.++ +.+..+. ....+....++..+.++++++.||.|+.||..+|+.+.++.
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG--~~~W~~~------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQ--QAAWEVP------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTT--EEEEEEE------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCCCCCCCcceeEEEEECCCC--CeEeEcc------CCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 378999999998 5554443 12233334566688899999999999999999999876553
Q ss_pred ------CceEecCCCcEEE
Q psy6522 582 ------RELFFHTDYRTLN 594 (1407)
Q Consensus 582 ------~~v~Fs~D~~~Lv 594 (1407)
..+.|..|++..+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SSCCCSCCEEEEETTEEEE
T ss_pred CCCcccCceEEEECCEEEE
Confidence 2466677776554
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.75 E-value=4.9e-10 Score=133.16 Aligned_cols=265 Identities=12% Similarity=-0.036 Sum_probs=139.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccc
Q psy6522 257 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPV 336 (1407)
Q Consensus 257 Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~ 336 (1407)
++..|++++.|+.|..||..+|+.+..+.. +.+.+..+..++ ..+++++.||.|..||..++..........+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g----~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE----PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC----CEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 577899999999999999999999988876 445444444432 57777789999999999877543332211100
Q ss_pred ccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEE
Q psy6522 337 MFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTAL 416 (1407)
Q Consensus 337 ~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~ 416 (1407)
. . .... .+. .+..|++|+.++.|+.||..+... +..+..+. .+.++|++..|++++.|+.|+
T Consensus 82 ~----~--~~sp----~~~-~~~~v~~g~~dg~v~a~D~~tG~~---~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 82 L----V--QASP----CRS-SDGILYMGKKQDIWYVIDLLTGEK---QQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp H----H--TTCS----CC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEE
T ss_pred c----c--ccCc----eEe-cCCEEEEEeCCCEEEEEECCCCcE---EEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 0 0 0011 111 344677888899999999854332 22222222 234567888899999999999
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCC---CEEEEEEecCCeEEEEECCCCceEEEEecCCC
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD---RWVITAINFNFQIKIWDAFNGDLVQVLKGHTN 493 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg---~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~ 493 (1407)
.||..+++..-.... ......+++.+. ..+++++. +|.|..||..+|+.+..+... .
T Consensus 144 a~d~~tG~~~W~~~~------------------~~~~~~~~~~~~~~~~~v~~~~~-dg~v~a~d~~tG~~~W~~~~~-~ 203 (369)
T 2hz6_A 144 MYDTKTRELRWNATY------------------FDYAASLPEDDVDYKMSHFVSNG-DGLVVTVDSESGDVLWIQNYA-S 203 (369)
T ss_dssp CCCSSSSSCCCEEEE------------------EEECCBCCCCCTTCCCCEEEEET-SCEEEEECTTTCCEEEEEECS-S
T ss_pred EEECCCCCEEEeEec------------------ccccCccccCCccccceEEEECC-CCEEEEEECCCCcEEEEecCC-C
Confidence 999998863221100 001112222321 45666666 999999999999998887643 3
Q ss_pred CeEE-EEEecCCCCEEEE--EeCCCcEEEEECCCCCcc--ceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEE
Q psy6522 494 EVFV-LESHPFDSRVLLS--AGHDGLIIIWDILSSKQR--GYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV 568 (1407)
Q Consensus 494 ~V~s-LafsP~dg~~LaS--gs~DG~V~IWDi~sgk~~--~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~I 568 (1407)
++.. ..+++ ++.+.+. ...++.++.+|..+++.. .+..+. ..+.+.. ..-.+..|++++.+|.|+.
T Consensus 204 pv~~~~~~~~-dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~------~~~~~~s--p~~~~g~lyv~~~~G~l~a 274 (369)
T 2hz6_A 204 PVVAFYVWQR-EGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYP------FPKETEA--KSKLTPTLYVGKYSTSLYA 274 (369)
T ss_dssp CEEEEEECTT-SSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCC------CCCHHHH--HHHSEEEECBEECSSCEEC
T ss_pred ceEEEEEecC-CceEeccceeecccceeeeehhcCCcccceeeeec------cCccccc--cccccceEEEecccCCEEe
Confidence 4433 33333 4432210 011445666776655200 222221 0111110 0013457788888899998
Q ss_pred EEcCCC
Q psy6522 569 YGLGGF 574 (1407)
Q Consensus 569 wdl~sg 574 (1407)
++....
T Consensus 275 l~~~~~ 280 (369)
T 2hz6_A 275 SPSMVH 280 (369)
T ss_dssp CEEEEC
T ss_pred cCcccc
Confidence 887643
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=1.7e-07 Score=115.86 Aligned_cols=262 Identities=8% Similarity=-0.049 Sum_probs=160.8
Q ss_pred CCCEEEEEECC-CeEEEEeCCCCceEEEEecc-CCceEEEEe-c-cCCCCCceEEEEEe------------------cCC
Q psy6522 257 RNILLAAGTVD-KTIRIWNLQTLAPISVLVGH-QGIITGVNF-C-PLEVNGFNYLASTS------------------TDG 314 (1407)
Q Consensus 257 Dg~lLaSgs~D-GtIrVWDl~tg~~v~~l~~H-~~~VtsLaf-s-pd~~~~~~~LaSgs------------------~DG 314 (1407)
||++|+.+..+ +.|.+.|+.+.++...+.-. ...+..+++ . |++ .++++++ .++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~----~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS----NYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC----SEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC----cEEEEecccccccCCCCcccccccccCc
Confidence 88888887764 57999999999988866432 245788887 4 765 7777774 234
Q ss_pred ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCc---------------eEEEEeccCCC
Q psy6522 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDH---------------HVRVYKMDGVD 379 (1407)
Q Consensus 315 tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG---------------~I~IwDl~~~~ 379 (1407)
.+.+.|..+.+........ +....++++|+|+++++.+.+. .|.+++...
T Consensus 176 ~vtvID~~t~~v~~qI~Vg-------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~-- 240 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVS-------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-- 240 (595)
T ss_dssp EEEEEETTTTEEEEEEEES-------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH--
T ss_pred eEEEEECCCCeEEEEEEeC-------------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc--
Confidence 6777777655333322221 1234578999999998887653 233333210
Q ss_pred CCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccC--Cce-EEeeeccCcCCCCCccccccccccccEEEEE
Q psy6522 380 SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC--SQW-RFIRLDMNTCLPHTKETSDETNKKIKVTMVA 456 (1407)
Q Consensus 380 ~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~Vtsla 456 (1407)
. ..+.++|+++.. +.|.+.|..+ +.. .... .......++.
T Consensus 241 ----------~------~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~I-----------------pvg~~PhGv~ 283 (595)
T 1fwx_A 241 ----------I------EKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYI-----------------PIANNPHGCN 283 (595)
T ss_dssp ----------H------HHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEE-----------------EEESSCCCEE
T ss_pred ----------e------eEeccCCCeeEE----CcEEEEeCcccCCceeEEEE-----------------ecCCCceEEE
Confidence 0 012344544332 5589999887 322 1110 1122345689
Q ss_pred ECCCCCEEEEEEecCCeEEEEECCCCc------------eEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 457 WDASDRWVITAINFNFQIKIWDAFNGD------------LVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 457 fSpdg~~Lasgs~~DG~I~IWDl~tg~------------~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
++|||+++++++..+.+|.++|+.+.+ .+..+.. ......++|+| ++...++.-.|+.|.+||+..
T Consensus 284 ~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 284 MAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp ECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECT-TSEEEEEETTTTEEEEEEHHH
T ss_pred EcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECC-CCeEEEEEecCCcEEEEEhhH
Confidence 999999999999888999999998653 2333322 23568899999 885555667799999999976
Q ss_pred CC--------ccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCC--eE-----------EEEEcCCCcc
Q psy6522 525 SK--------QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYG--HL-----------LVYGLGGFKR 576 (1407)
Q Consensus 525 gk--------~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG--~I-----------~Iwdl~sg~~ 576 (1407)
.. ...+..+.......|...-..+.++|||++|+++..-. .+ .++|++++++
T Consensus 362 a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 362 AIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp HHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred hhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 21 12333333100000011112235689999999986532 22 7888865553
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.72 E-value=1.9e-07 Score=107.15 Aligned_cols=291 Identities=9% Similarity=-0.070 Sum_probs=171.7
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccccccee
Q psy6522 251 DIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 330 (1407)
Q Consensus 251 sLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~ 330 (1407)
++.+..++. |..++.++.|..|| .+++.+..+..+...+.++...++ ..|+.++.+ |..+|. ++......
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~-----g~l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKD-----GTIYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTT-----TEECCSSCE--EEEECC-CGGGGGGS
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecC-----CcEEEecCc--EEEECC-CCcEEEEE
Confidence 345555664 55566788899999 888876655544444566666554 345555554 777775 33222111
Q ss_pred eeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe
Q psy6522 331 VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS 410 (1407)
Q Consensus 331 ~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs 410 (1407)
.... .......+. +..|.+++.++.|..+|.. .........+...+.++...+++. |+.++
T Consensus 94 ~~~~------------~~~~~~~~~--~~~l~v~t~~~~l~~~d~~----g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt 154 (330)
T 3hxj_A 94 DTKK------------AIVSDFTIF--EDILYVTSMDGHLYAINTD----GTEKWRFKTKKAIYATPIVSEDGT-IYVGS 154 (330)
T ss_dssp CC-----------------CCEEEE--TTEEEEECTTSEEEEECTT----SCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred ECCC------------CcccCceEE--CCEEEEEecCCEEEEEcCC----CCEEEEEcCCCceeeeeEEcCCCE-EEEEc
Confidence 1110 111112222 4457778888899999873 223334444555677788887776 66677
Q ss_pred CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec
Q psy6522 411 RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 490 (1407)
Q Consensus 411 ~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g 490 (1407)
.++.|..+|.. +....... . ....+.++.+..++...+.+ +.|..+| .+++.+..+..
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~-~---------------~~~~~~~~~~d~~g~l~v~t----~~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFK-T---------------NDAITSAASIGKDGTIYFGS----DKVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEE-C---------------SSCCCSCCEECTTCCEEEES----SSEEEEC-TTSCEEEEECC
T ss_pred CCCEEEEECCC-CCEeEEEe-c---------------CCCceeeeEEcCCCEEEEEe----CEEEEEC-CCCcEEEEEcc
Confidence 88999999988 55332211 0 11234445666777655443 6789999 78888777776
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q psy6522 491 HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYG 570 (1407)
Q Consensus 491 H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwd 570 (1407)
....+.++...+ ++. |..++.++.|..+|. ++ ..+..+. .....+..+.+.++| .|.+++.+|.|..++
T Consensus 213 ~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~-~g--~~~~~~~-----~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 213 GYWTVTRPAISE-DGT-IYVTSLDGHLYAINP-DG--TEKWRFK-----TGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp SSCCCSCCEECT-TSC-EEEEETTTEEEEECT-TS--CEEEEEE-----CSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CCcceeceEECC-CCe-EEEEcCCCeEEEECC-CC--CEeEEee-----CCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 666788888876 554 556677888888874 34 3333332 112233445566566 466677788999999
Q ss_pred cCCCccccccC------CceEecCCCcEEEecCCCeeeEe
Q psy6522 571 LGGFKRPQNIP------RELFFHTDYRTLNRPNGLFEPTY 604 (1407)
Q Consensus 571 l~sg~~~~~lp------~~v~Fs~D~~~Lv~~~~~~~~v~ 604 (1407)
. +++.+..+. ..+++..+++..+....+.+.+.
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYAL 320 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEE
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEE
Confidence 6 555433322 24455566666665555543333
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=2.8e-06 Score=108.80 Aligned_cols=308 Identities=9% Similarity=0.010 Sum_probs=179.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGE----------I-SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 216 G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~----------I-tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
+..|++++.++.|..+|..+|+.+..+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557788888999999999999999888643211 0 11222 3557888889999999999999998877
Q ss_pred eccCC-ceEEEEeccCCCCCceEEEEEec------CCceeEEeeccccccceeeec--ccccc--------c-ccc----
Q psy6522 285 VGHQG-IITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFH--EPVMF--------N-ERI---- 342 (1407)
Q Consensus 285 ~~H~~-~VtsLafspd~~~~~~~LaSgs~------DGtI~vWDl~t~~~~~~~~~~--~~~~~--------~-~~~---- 342 (1407)
..... ....+...|.- .+ ..+++++. +|.|..+|..+++........ .+... . ...
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 64211 00111111110 01 34555543 588999999888665443321 11000 0 000
Q ss_pred ----CCCCcceEEEEECCCCceEEEeeCCce-------------------EEEEeccCCCCCceeEEEee--cC------
Q psy6522 343 ----RPGNAHILCSSFSPGGLFLATGSGDHH-------------------VRVYKMDGVDSPLGILEVEE--HS------ 391 (1407)
Q Consensus 343 ----~~h~~~I~~vafSpdg~~Lasgs~DG~-------------------I~IwDl~~~~~~~~i~~l~~--h~------ 391 (1407)
..+......+++.++..++++++.++. |..+|..+. ..+..+.. |.
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccC
Confidence 011112235788888888888877764 788887433 22333222 22
Q ss_pred -CCcceEEEcCCCC---EEEEEeCCCeEEEEEccCCceEEeeeccCc----C---CCCCcccccc---cc----------
Q psy6522 392 -DKVDSIQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNT----C---LPHTKETSDE---TN---------- 447 (1407)
Q Consensus 392 -~~V~sIafSpdg~---~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~----~---~~~~~~~~~~---~~---------- 447 (1407)
.++....+..+|+ .|+.++.+|.++++|..+++.+........ . .......... ..
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 1122222233564 688899999999999999986532110000 0 0000000000 00
Q ss_pred ccccEEEEEECCCCCEEEEEEe-----------------------------------cCCeEEEEECCCCceEEEEecCC
Q psy6522 448 KKIKVTMVAWDASDRWVITAIN-----------------------------------FNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 448 ~~~~VtslafSpdg~~Lasgs~-----------------------------------~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
....-..++++|+...+++... .+|.|..||+.+++.+..+..+.
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 0000112567777766665321 13789999999999988776443
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeee
Q psy6522 493 NEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 493 ~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
. +....+.. .+.+|+.++.||.|++||..++ +.+..+.
T Consensus 459 ~-~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG--~~l~~~~ 496 (668)
T 1kv9_A 459 H-WNGGTLST-AGNLVFQGTAAGQMHAYSADKG--EALWQFE 496 (668)
T ss_dssp S-CCCCEEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEE
T ss_pred C-CcCceeEe-CCCEEEEECCcccchhhhhhcC--hhheEec
Confidence 2 33333444 6788999999999999999999 6666665
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=5.4e-05 Score=98.48 Aligned_cols=359 Identities=13% Similarity=0.031 Sum_probs=212.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe--------------CCCCCeEEEEEcCCCCEEEEEECCCe
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR--------------GCSGEISDIAIDNRNILLAAGTVDKT 269 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~--------------gH~~~ItsLafSpDg~lLaSgs~DGt 269 (1407)
...|+++...++|.+ ..|+..+-|.++|..++....... .....|.+|....+|.+ ..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSC
T ss_pred CceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCe
Confidence 457999999988864 556664568889987765432211 13467999999998864 45666677
Q ss_pred EEEEeCCCCceEEEEe---------ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccc
Q psy6522 270 IRIWNLQTLAPISVLV---------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 340 (1407)
Q Consensus 270 IrVWDl~tg~~v~~l~---------~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~ 340 (1407)
|..++..+........ .....|.++...+++ .|..|+.++-|..|+..+..... . ..+
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-----~lWigt~~~Gl~~~~~~~~~~~~--~-~~~----- 401 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-----KLWIGTDGGGINVFENGKRVAIY--N-KEN----- 401 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS-----CEEEEEBSSCEEEEETTEEEEEC--C---------
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC-----CEEEEeCCCcEEEEECCCCeEEE--c-cCC-----
Confidence 8888887654332211 023468888876643 46666766668888866442111 0 000
Q ss_pred ccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe---ecCCCcceEEEcCCCCEEEEEeCCCeEEE
Q psy6522 341 RIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE---EHSDKVDSIQWSHSHLRFVSGSRDGTALI 417 (1407)
Q Consensus 341 ~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~---~h~~~V~sIafSpdg~~LaSgs~DGtI~I 417 (1407)
.......|.++...++|.+.+ |+.++-|..++..+. .+..+. .....|.++...+++. |..|+. +.|.+
T Consensus 402 -~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 402 -RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK----KFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp ---CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC----EEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEE
T ss_pred -CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC----cEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEE
Confidence 012236789999988876554 666667888876321 122221 1245688888888876 445555 56888
Q ss_pred EEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec----CCC
Q psy6522 418 WYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG----HTN 493 (1407)
Q Consensus 418 WDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g----H~~ 493 (1407)
||..++.+....... ........|.+++..++|.+.+.+. ++-|..||..+++... +.. ...
T Consensus 474 ~~~~~~~~~~~~~~~-----------~~~~~~~~i~~i~~d~~g~lWigt~--~~Gl~~~~~~~~~~~~-~~~~~~l~~~ 539 (781)
T 3v9f_A 474 IDLASKKVIHHYDTS-----------NSQLLENFVRSIAQDSEGRFWIGTF--GGGVGIYTPDMQLVRK-FNQYEGFCSN 539 (781)
T ss_dssp EESSSSSCCEEECTT-----------TSSCSCSCEEEEEECTTCCEEEEES--SSCEEEECTTCCEEEE-ECTTTTCSCS
T ss_pred EeCCCCeEEecccCc-----------ccccccceeEEEEEcCCCCEEEEEc--CCCEEEEeCCCCeEEE-ccCCCCCCCC
Confidence 998876644322100 0011235688999999888665543 3447778887665433 321 235
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
.|.++...+ ++.+.++ +.+|.|..||..+++ +..+. ...+-....|.++...++|.+.+++ ..| |..|+..+
T Consensus 540 ~i~~i~~d~-~g~lWi~-T~~Glv~~~d~~~~~---~~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 540 TINQIYRSS-KGQMWLA-TGEGLVCFPSARNFD---YQVFQ-RKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp CEEEEEECT-TSCEEEE-ETTEEEEESCTTTCC---CEEEC-GGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred eeEEEEECC-CCCEEEE-ECCCceEEECCCCCc---EEEcc-ccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence 688888877 6665554 446665889887662 22222 1122234568899999999866654 444 66777665
Q ss_pred Ccccc-----ccC------CceEecCCCcEEEecCCCeeeEeeCCC
Q psy6522 574 FKRPQ-----NIP------RELFFHTDYRTLNRPNGLFEPTYDEVT 608 (1407)
Q Consensus 574 g~~~~-----~lp------~~v~Fs~D~~~Lv~~~~~~~~v~Dv~T 608 (1407)
++... -++ ..++..++++..+....++ .++|...
T Consensus 612 ~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~Gl-~~f~p~~ 656 (781)
T 3v9f_A 612 KCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGL-CFFNPDI 656 (781)
T ss_dssp TEEEEECGGGTCCSSCEEEEEEEECTTSCEEEEETTEE-EEECSCC
T ss_pred CceEEecccCCccccccccCceEECCCCEEEEECCCce-EEEChhh
Confidence 54311 011 1345556777776555543 3566543
No 239
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.8e-05 Score=96.96 Aligned_cols=334 Identities=15% Similarity=0.087 Sum_probs=198.5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCC
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR-------GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQ 276 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~-------gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~ 276 (1407)
...|.+|..+++|.+.+ |+.+ -|.+||..+++...... .....|.+|....+|.+. .|+..+-|.+++..
T Consensus 210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence 35799999999887665 4445 58899987765443221 124579999998888654 45654567888987
Q ss_pred CCceEEEEe--------------ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccccc
Q psy6522 277 TLAPISVLV--------------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 277 tg~~v~~l~--------------~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
++....... .....|.+|.....+ .|..|+.++-|..|+.......... ..+.. ....
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-----~lWigt~~~Gl~~~~~~~~~~~~~~--~~~~~-~~~~ 358 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-----NIWIGTWGGGINFISNAPPTFHTWS--YSPTQ-MNES 358 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSC-----CEEEEEBSSCEEEECSSCCSCEEEC------C-CCSS
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-----CEEEEecCCeEEEeCCCCCcceeec--cCccc-cccC
Confidence 655332211 123468888877643 4667776667888886654211110 00000 0000
Q ss_pred CCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEE-EeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEcc
Q psy6522 343 RPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILE-VEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 343 ~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~-l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~ 421 (1407)
......|.+++..++|.+ .+|+.++-|.+|+.... ....... .......|.++...+++. |..|+.++.|..++..
T Consensus 359 ~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 359 SLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTR 435 (781)
T ss_dssp CCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEE-EEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSS
T ss_pred CCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCC
Confidence 112356899999888764 45665566888886321 1110100 011345688898888876 4457777778899887
Q ss_pred CCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecC-----CCCeE
Q psy6522 422 CSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-----TNEVF 496 (1407)
Q Consensus 422 t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH-----~~~V~ 496 (1407)
+++....... ......|.++...+++.+.+ ++. +-|.+||..+++........ ...|.
T Consensus 436 ~~~~~~~~~~--------------~~~~~~v~~i~~d~~g~lwi-gt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~ 498 (781)
T 3v9f_A 436 LKKFQIIELE--------------KNELLDVRVFYEDKNKKIWI-GTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVR 498 (781)
T ss_dssp SCEEEECCST--------------TTCCCCEEEEEECTTSEEEE-EET--TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred CCcEEEeccC--------------CCCCCeEEEEEECCCCCEEE-EEC--CceEEEeCCCCeEEecccCcccccccceeE
Confidence 7764432110 11345688899888876544 443 46889998877654433222 35788
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Q psy6522 497 VLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFK 575 (1407)
Q Consensus 497 sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~ 575 (1407)
++...+ ++.+.+ |+.++-|..||..+++ +..+.. ..+.....|.++...++|.+.+++. .|.|..|+..+++
T Consensus 499 ~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~---~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 499 SIAQDS-EGRFWI-GTFGGGVGIYTPDMQL---VRKFNQ-YEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp EEEECT-TCCEEE-EESSSCEEEECTTCCE---EEEECT-TTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred EEEEcC-CCCEEE-EEcCCCEEEEeCCCCe---EEEccC-CCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 998877 666544 4554457888876652 222221 1122345789999999998666554 6655888887664
No 240
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.64 E-value=5.3e-06 Score=99.55 Aligned_cols=243 Identities=10% Similarity=0.070 Sum_probs=149.2
Q ss_pred EEEEc--CCCCEEEEEE-CCCeEEEEEcCCC----cEEEEEe-------CCCCCeEEEEEcCCCCEEEEEECC------C
Q psy6522 209 CVLFD--KLGEVIVTGA-DDLLIKLWRARDG----KLLATLR-------GCSGEISDIAIDNRNILLAAGTVD------K 268 (1407)
Q Consensus 209 ~vafS--pdG~~LaTGS-~DG~V~IWDl~tg----~~l~tl~-------gH~~~ItsLafSpDg~lLaSgs~D------G 268 (1407)
|..++ .++++|++.+ .++.|.|+|+.+. ++++++. .....-..+..+|+| +++++..+ +
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPG 164 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCC
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCC
Confidence 33447 7888777654 5788999999766 6777773 111244567889999 77776655 7
Q ss_pred eEEEEeCCCCceEEEEeccCC---ceEEEEeccCCCCCceEEEEEe-------------------cCCceeEEeeccccc
Q psy6522 269 TIRIWNLQTLAPISVLVGHQG---IITGVNFCPLEVNGFNYLASTS-------------------TDGCIGFWKYKLDID 326 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~l~~H~~---~VtsLafspd~~~~~~~LaSgs-------------------~DGtI~vWDl~t~~~ 326 (1407)
.|.+.|..+++.+..+..... .-..+.|+|++ +.++++. .+.+|.+||+.+.+.
T Consensus 165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred eEEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 899999999999998863222 23457789976 7777774 368999999987633
Q ss_pred cceeeeccccccccccCCCCcceEEEE--ECCCCceEEEee------CCceEEEEeccCCCCCceeEE--Eeec------
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSS--FSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILE--VEEH------ 390 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~va--fSpdg~~Lasgs------~DG~I~IwDl~~~~~~~~i~~--l~~h------ 390 (1407)
........ .......+. |+|+++++++++ .++.|.+|..+. ........ +...
T Consensus 241 ~~tI~vg~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~l 309 (462)
T 2ece_A 241 IHSLTLGE----------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNL 309 (462)
T ss_dssp EEEEESCT----------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSC
T ss_pred eeEEecCC----------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccc
Confidence 33222210 012233444 499999888776 466888777643 22111111 1110
Q ss_pred ----------CCCcceEEEcCCCCEEEEEeC-CCeEEEEEccCC-ceEEe-eeccCcCCCCCccccccccccccEEEEEE
Q psy6522 391 ----------SDKVDSIQWSHSHLRFVSGSR-DGTALIWYYKCS-QWRFI-RLDMNTCLPHTKETSDETNKKIKVTMVAW 457 (1407)
Q Consensus 391 ----------~~~V~sIafSpdg~~LaSgs~-DGtI~IWDl~t~-~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Vtslaf 457 (1407)
......|.+++||++|+++.. .+.|.+||+... ....+ .............. ........-..+++
T Consensus 310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~-~G~~~~ggPr~~~l 388 (462)
T 2ece_A 310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP-AGHKLTGAPQMLEI 388 (462)
T ss_dssp CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCT-TSCCCCSCCCCEEE
T ss_pred cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccc-ccccCCCCCCEEEE
Confidence 245788999999998877764 689999998633 22211 11111000000000 00001123467899
Q ss_pred CCCCCEEEEEE
Q psy6522 458 DASDRWVITAI 468 (1407)
Q Consensus 458 Spdg~~Lasgs 468 (1407)
+|||++|+++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999986
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=120.52 Aligned_cols=262 Identities=9% Similarity=0.011 Sum_probs=143.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEE
Q psy6522 215 LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGV 294 (1407)
Q Consensus 215 dG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsL 294 (1407)
++.+|++++.||.|..||..+|+.+..+.. +.+.+..+..++.++++++.|+.|+.||..+|+.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 477999999999999999999999998886 5666666777888888888999999999999988776654422110
Q ss_pred EeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEe
Q psy6522 295 NFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYK 374 (1407)
Q Consensus 295 afspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwD 374 (1407)
..+|.- ..+..|++++.++.|..||..+++........ . ...++|++..|++++.++.|+.||
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------------------EEEEEEEEEEECCC
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------------C---cccccccCCEEEEEecCCEEEEEE
Confidence 111110 01257888889999999999988544332211 0 133456788899999999999999
Q ss_pred ccCCCCCceeEEEeecCCCcceEEEcCCC---CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccccccccccc
Q psy6522 375 MDGVDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 451 (1407)
Q Consensus 375 l~~~~~~~~i~~l~~h~~~V~sIafSpdg---~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 451 (1407)
..+....... ..... ...+++.+. ..+++++.||.|..||..+++..-... . ....
T Consensus 147 ~~tG~~~W~~-~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~---------------~~pv 205 (369)
T 2hz6_A 147 TKTRELRWNA-TYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-Y---------------ASPV 205 (369)
T ss_dssp SSSSSCCCEE-EEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-C---------------SSCE
T ss_pred CCCCCEEEeE-ecccc----cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-C---------------CCce
Confidence 8544332222 12221 223334432 457778899999999999887543221 0 0111
Q ss_pred EEEEEECCCCCEEEE--EEecCCeEEEEECCCCc----eEEEEecCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEECCC
Q psy6522 452 VTMVAWDASDRWVIT--AINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPF-DSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 452 VtslafSpdg~~Las--gs~~DG~I~IWDl~tg~----~l~~l~gH~~~V~sLafsP~-dg~~LaSgs~DG~V~IWDi~s 524 (1407)
+...+++.++...+. ... ++.++.+|..+|+ .+..+... +.+. +|. .+..|+.++.||.|+.++...
T Consensus 206 ~~~~~~~~dg~~~v~~~~~~-~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 206 VAFYVWQREGLRKVMHINVA-VETLRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EEEEECTTSSCEEECCEEEE-HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEEE
T ss_pred EEEEEecCCceEeccceeec-ccceeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCccc
Confidence 233455566543210 011 3455666665555 33222211 1111 110 235788888999999988763
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=8.7e-07 Score=109.66 Aligned_cols=290 Identities=11% Similarity=-0.012 Sum_probs=178.5
Q ss_pred CCCCEEEEEEC-CCeEEEEEcCCCcEEEEEeC-CCCCeEEEEE-c-CCCCEEEEEE------------------CCCeEE
Q psy6522 214 KLGEVIVTGAD-DLLIKLWRARDGKLLATLRG-CSGEISDIAI-D-NRNILLAAGT------------------VDKTIR 271 (1407)
Q Consensus 214 pdG~~LaTGS~-DG~V~IWDl~tg~~l~tl~g-H~~~ItsLaf-S-pDg~lLaSgs------------------~DGtIr 271 (1407)
+||++|+.... ++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.|.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37888888766 45799999999998885542 2356889998 5 9999999885 246899
Q ss_pred EEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCce-eEEeeccccccceee-eccccccccccCCCCcce
Q psy6522 272 IWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCI-GFWKYKLDIDISKTV-FHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 272 VWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI-~vWDl~t~~~~~~~~-~~~~~~~~~~~~~h~~~I 349 (1407)
+.|..+.+.+..+.-.. ....++++|++ .++++++.+..- ...+..+........ ...+.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdG----k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~------------- 240 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEG----KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE------------- 240 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSS----SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH-------------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCC----CEEEEEecCcccCcchhhccccccceEEEeeccc-------------
Confidence 99999998888776322 34677889976 788888766421 111111110000000 00000
Q ss_pred EEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEe
Q psy6522 350 LCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFI 428 (1407)
Q Consensus 350 ~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~ 428 (1407)
...+.++|+++.. +.|.|.|.........+..+.. .....++.++|||+++++++ .+.+|.++|+.+.+...
T Consensus 241 -~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~- 313 (595)
T 1fwx_A 241 -IEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF- 313 (595)
T ss_dssp -HHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-
T ss_pred -eeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-
Confidence 0012233444333 4589999853111111223322 34567899999999776655 67899999998642100
Q ss_pred eeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC----------CceEEEEecCCCCe---
Q psy6522 429 RLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN----------GDLVQVLKGHTNEV--- 495 (1407)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t----------g~~l~~l~gH~~~V--- 495 (1407)
...+..................++|+++| +++++...|+.|.+||+.+ .+.+..+..|-.+-
T Consensus 314 ----~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 314 ----YENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp ----HSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred ----ccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 00000011111122344567889999999 8888888899999999877 56777887765432
Q ss_pred --EEEEEecCCCCEEEEEeC---CCc----------EEEEECCCCCccceeeee
Q psy6522 496 --FVLESHPFDSRVLLSAGH---DGL----------IIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 496 --~sLafsP~dg~~LaSgs~---DG~----------V~IWDi~sgk~~~l~~~~ 534 (1407)
..+.++| |+++|+++.. |.. -.++|+..++...+....
T Consensus 389 ~~~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p 441 (595)
T 1fwx_A 389 TVMGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP 441 (595)
T ss_dssp ETTTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred eccceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc
Confidence 1123467 9999998854 332 288999766544444433
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.59 E-value=1.2e-05 Score=96.52 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=148.7
Q ss_pred EEc--CCCCEEEE-EECCCeEEEEeCCCC----ceEEEEe------c-cCCceEEEEeccCCCCCceEEEEEecC-----
Q psy6522 253 AID--NRNILLAA-GTVDKTIRIWNLQTL----APISVLV------G-HQGIITGVNFCPLEVNGFNYLASTSTD----- 313 (1407)
Q Consensus 253 afS--pDg~lLaS-gs~DGtIrVWDl~tg----~~v~~l~------~-H~~~VtsLafspd~~~~~~~LaSgs~D----- 313 (1407)
.++ .++++|+. |..++.|.|+|+.+. +.+.++. . ....-..+..+|++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----IYISALGNEEGEG 162 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----EEEEEEEETTSCS
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-----EEEEcCCCcCCCC
Confidence 336 77777665 456789999999755 5566662 0 11134566777753 55565555
Q ss_pred -CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-------------------CCceEEEE
Q psy6522 314 -GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------------------GDHHVRVY 373 (1407)
Q Consensus 314 -GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-------------------~DG~I~Iw 373 (1407)
|.|.++|..+...+....... ......+.+.|+|+++.+++.. ....|.+|
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~---------~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDR---------GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBC---------TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCC---------CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 689999988775444332211 0112334688999999888874 36899999
Q ss_pred eccCCCCCceeEEEeec--CCCcceEEE--cCCCCEEEEEe------CCCeEEEEEccCCceEEeee-ccCcCCCCCccc
Q psy6522 374 KMDGVDSPLGILEVEEH--SDKVDSIQW--SHSHLRFVSGS------RDGTALIWYYKCSQWRFIRL-DMNTCLPHTKET 442 (1407)
Q Consensus 374 Dl~~~~~~~~i~~l~~h--~~~V~sIaf--Spdg~~LaSgs------~DGtI~IWDl~t~~~~~~~l-~~~~~~~~~~~~ 442 (1407)
|+... ..+..+.-- ......|.| +|+++++++++ .+++|.+|....+.+..... +...........
T Consensus 234 D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred ECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 99532 333333321 122344555 99999887776 56789888877666544321 111100000000
Q ss_pred ---cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---CceEEEEecCC--------------CCeEEEEEec
Q psy6522 443 ---SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---GDLVQVLKGHT--------------NEVFVLESHP 502 (1407)
Q Consensus 443 ---~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t---g~~l~~l~gH~--------------~~V~sLafsP 502 (1407)
............+.+|+||++|+++....+.|.+||+.. .+++..+.... +.-..++++|
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp 390 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR 390 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC
Confidence 000011245677999999999999998889999999863 34555554220 1247788999
Q ss_pred CCCCEEEEEe
Q psy6522 503 FDSRVLLSAG 512 (1407)
Q Consensus 503 ~dg~~LaSgs 512 (1407)
|+++|+++.
T Consensus 391 -DGk~LyVaN 399 (462)
T 2ece_A 391 -DGRRVYVTN 399 (462)
T ss_dssp -TSSEEEEEC
T ss_pred -CCCEEEEEc
Confidence 999888876
No 244
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.54 E-value=3.6e-05 Score=96.98 Aligned_cols=332 Identities=12% Similarity=0.027 Sum_probs=181.2
Q ss_pred CCEEEEEEC-CCeEEEEEc-CCCcEEEEEeCCCCC-----------eEEEEEcCCCCE----EEEEECCCeEEEEeCCCC
Q psy6522 216 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSGE-----------ISDIAIDNRNIL----LAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 216 G~~LaTGS~-DG~V~IWDl-~tg~~l~tl~gH~~~-----------ItsLafSpDg~l----LaSgs~DGtIrVWDl~tg 278 (1407)
+..|++++. ++.|.-+|. .+|+.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 556777777 889999999 899999887643211 123455443434 788888999999999999
Q ss_pred ceEEEEeccCC----ceEEEEeccCCCCCceEEEEEe------cCCceeEEeeccccccceeeeccccccc---------
Q psy6522 279 APISVLVGHQG----IITGVNFCPLEVNGFNYLASTS------TDGCIGFWKYKLDIDISKTVFHEPVMFN--------- 339 (1407)
Q Consensus 279 ~~v~~l~~H~~----~VtsLafspd~~~~~~~LaSgs------~DGtI~vWDl~t~~~~~~~~~~~~~~~~--------- 339 (1407)
+.+........ .+++ .|.- .+ ..+++++ .+|.|..+|..+++.+-......+....
T Consensus 142 ~~~W~~~~~~~~~~~~~~s---sP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTI---APYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECCCGGGTCBCCS---CCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCCCCCccceeec---CCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 99877653220 1111 1110 01 3455554 3789999999988655443322211000
Q ss_pred ----------------cccCCCCcce-EEEEECCCCceEEEeeCC----------------ceEEEEeccCCCCCceeEE
Q psy6522 340 ----------------ERIRPGNAHI-LCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILE 386 (1407)
Q Consensus 340 ----------------~~~~~h~~~I-~~vafSpdg~~Lasgs~D----------------G~I~IwDl~~~~~~~~i~~ 386 (1407)
.........+ ..+++.+...+++.++.+ +.|..+|..+... .-...
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~-~W~~q 295 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA-KFGYQ 295 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE-EEEEE
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce-eeEee
Confidence 0000001111 245666777777777655 3678888743321 11112
Q ss_pred EeecCC----Ccce-EEEc---CCC---CEEEEEeCCCeEEEEEccCCceEEeeeccCcC--------CCCCccc-----
Q psy6522 387 VEEHSD----KVDS-IQWS---HSH---LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC--------LPHTKET----- 442 (1407)
Q Consensus 387 l~~h~~----~V~s-IafS---pdg---~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~--------~~~~~~~----- 442 (1407)
...|.. .+.. +.+. .+| ..++.++.+|.+.++|..+++.+......... .......
T Consensus 296 ~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred cCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 222211 0111 1122 467 46777899999999999999865432211000 0000000
Q ss_pred ----------cccccccccEEEEEECCCCCEEEEEEe--------------------------------------cCCeE
Q psy6522 443 ----------SDETNKKIKVTMVAWDASDRWVITAIN--------------------------------------FNFQI 474 (1407)
Q Consensus 443 ----------~~~~~~~~~VtslafSpdg~~Lasgs~--------------------------------------~DG~I 474 (1407)
.........-..++++|+..++++... ..|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 000000001123556666655554321 24789
Q ss_pred EEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCC
Q psy6522 475 KIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDG 554 (1407)
Q Consensus 475 ~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG 554 (1407)
..||+.+++.+...... ..+..-.+.. .+.+|+.++.||.|+.||..++ +.+..+. +... ....-+.+..||
T Consensus 456 ~A~D~~tG~~~W~~~~~-~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG--~~lW~~~--l~~g--~~~~P~~y~~~G 527 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTG--DLLWKFK--IPSG--AIGYPMTYTHKG 527 (599)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEE--CSSC--CCSCCEEEEETT
T ss_pred EEEECCCCCEEeEecCC-CCccCcceEe-cCCEEEEECCCCeEEEEECCCC--CEEEEee--CCCC--cEeccEEEEeCC
Confidence 99999999988776522 1121111222 4677888999999999999999 6666654 1111 111224555677
Q ss_pred CE-EEEEe
Q psy6522 555 TT-CALTD 561 (1407)
Q Consensus 555 ~~-LAsgs 561 (1407)
+. +++.+
T Consensus 528 ~qyv~~~~ 535 (599)
T 1w6s_A 528 TQYVAIYY 535 (599)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEc
Confidence 64 44443
No 245
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.53 E-value=6.9e-05 Score=94.27 Aligned_cols=333 Identities=15% Similarity=0.044 Sum_probs=181.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCe---------EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEec
Q psy6522 216 GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEI---------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 286 (1407)
Q Consensus 216 G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~I---------tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~ 286 (1407)
+..|++++.++.|..+|..+|+.+..+....... ..+++ .+..|+.++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4456666664559999999999998876443210 11222 355788888999999999999999887654
Q ss_pred cCC----ceE-EEEeccCCCCCceEEEEEec------CCceeEEeeccccccceeeeccccc-------------c-c--
Q psy6522 287 HQG----IIT-GVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVM-------------F-N-- 339 (1407)
Q Consensus 287 H~~----~Vt-sLafspd~~~~~~~LaSgs~------DGtI~vWDl~t~~~~~~~~~~~~~~-------------~-~-- 339 (1407)
... .+. ..........+...+++++. ++.|..+|..+++..-......... . .
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 11111110011125666553 7889999988876554322110000 0 0
Q ss_pred -------------cccCCCCcceEEEEECCCCceEEEeeC--------------------C----ceEEEEeccCCCCCc
Q psy6522 340 -------------ERIRPGNAHILCSSFSPGGLFLATGSG--------------------D----HHVRVYKMDGVDSPL 382 (1407)
Q Consensus 340 -------------~~~~~h~~~I~~vafSpdg~~Lasgs~--------------------D----G~I~IwDl~~~~~~~ 382 (1407)
.....+...-..+++.|...++++++. | +.|..+|..+. .
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG---~ 302 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG---E 302 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC---C
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC---C
Confidence 000001111134667777777776653 2 57888887433 2
Q ss_pred eeEEEe--ecCC----Ccce-EEEc---CCCC---EEEEEeCCCeEEEEEccCCceEEeeeccCcC-----C---CCCcc
Q psy6522 383 GILEVE--EHSD----KVDS-IQWS---HSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMNTC-----L---PHTKE 441 (1407)
Q Consensus 383 ~i~~l~--~h~~----~V~s-IafS---pdg~---~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~-----~---~~~~~ 441 (1407)
.+..+. .|.. .+.. +.+. .+|+ .|+.++.+|.++++|..+++.+......... . .....
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEe
Confidence 233222 2321 1111 2222 4664 7888999999999999999865432111000 0 00000
Q ss_pred c----c---------------cc--ccccccEEEEEECCCCCEEEEEEe-------------------------------
Q psy6522 442 T----S---------------DE--TNKKIKVTMVAWDASDRWVITAIN------------------------------- 469 (1407)
Q Consensus 442 ~----~---------------~~--~~~~~~VtslafSpdg~~Lasgs~------------------------------- 469 (1407)
. . .. ......-..++++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 0 0 00 000000124567777666655432
Q ss_pred -cCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEE
Q psy6522 470 -FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDG 548 (1407)
Q Consensus 470 -~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~sl 548 (1407)
.+|.|..||+.+++.+.....+. .+..-.... .+.+++.|+.||.|+.||..++ +.+..+.. .. .....-+
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG--~~lW~~~~--~~--g~~a~P~ 534 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSG--KELWKFQT--GS--GIVSPPI 534 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEEC--SS--CCCSCCE
T ss_pred CCcceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCC--CEEEEecC--CC--CcccCce
Confidence 15789999999999887766432 222211222 4678888999999999999999 66766651 11 1111225
Q ss_pred EECCCCCE-EEEEe
Q psy6522 549 KWSPDGTT-CALTD 561 (1407)
Q Consensus 549 afSpDG~~-LAsgs 561 (1407)
.|..||+. +++.+
T Consensus 535 ~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 535 TWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEc
Confidence 56678864 44443
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.52 E-value=7.1e-05 Score=83.72 Aligned_cols=248 Identities=11% Similarity=-0.011 Sum_probs=150.9
Q ss_pred CEEEEEECCCeEEEEEcCCCcE-----EEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCCceEEEEeccCCc
Q psy6522 217 EVIVTGADDLLIKLWRARDGKL-----LATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTLAPISVLVGHQGI 290 (1407)
Q Consensus 217 ~~LaTGS~DG~V~IWDl~tg~~-----l~tl~gH~~~ItsLafSpDg~lLaSg-s~DGtIrVWDl~tg~~v~~l~~H~~~ 290 (1407)
.+|+.+.. +.|..+++..... ...+......+..++|++++..|+.+ ..++.|.++++.+......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 4788888865532 11222223457899999976655544 45689999999766544444333346
Q ss_pred eEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC---C
Q psy6522 291 ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---D 367 (1407)
Q Consensus 291 VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~---D 367 (1407)
..++++.+++ +.++++-...+.|.++++..... . .... ........++++|++..|+.+.. .
T Consensus 81 p~~ia~d~~~---~~lyv~d~~~~~I~~~~~~g~~~-~-~~~~----------~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 81 PEGIALDHLG---RTIFWTDSQLDRIEVAKMDGTQR-R-VLFD----------TGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp EEEEEEETTT---TEEEEEETTTTEEEEEETTSCSC-E-EEEC----------SSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred ccEEEEEecC---CeEEEEECCCCEEEEEEcCCCCE-E-EEEE----------CCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 7899998853 25555556677898888764321 1 1110 11134688999996555554443 4
Q ss_pred ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccc
Q psy6522 368 HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446 (1407)
Q Consensus 368 G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~ 446 (1407)
+.|..+++++.. ...+ ..........|++++++..|+.+ ...+.|.++|+......... .
T Consensus 146 ~~I~~~~~dg~~-~~~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~--------------- 206 (267)
T 1npe_A 146 PKIETSHMDGTN-RRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-E--------------- 206 (267)
T ss_dssp CEEEEEETTSCC-CEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-E---------------
T ss_pred cEEEEEecCCCC-cEEE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-c---------------
Confidence 688888885322 1111 11223456789999987766554 45688999998754322111 0
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCC-CCeEEEEEec
Q psy6522 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHP 502 (1407)
Q Consensus 447 ~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~-~~V~sLafsP 502 (1407)
.......++. ++..|+++...++.|.++|..+++.+..+.... ...+.|++.|
T Consensus 207 -~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 207 -GLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp -CCCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred -CCCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 0111234554 356777777657899999999999888886433 2467788887
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.48 E-value=3e-05 Score=97.38 Aligned_cols=308 Identities=10% Similarity=-0.012 Sum_probs=172.5
Q ss_pred CCEEEEEEC-CCeEEEEEc-CCCcEEEEEeCCCC-Ce----------EEEEEcCCCCEEEEEECCCeEEEEeCCCCceEE
Q psy6522 216 GEVIVTGAD-DLLIKLWRA-RDGKLLATLRGCSG-EI----------SDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS 282 (1407)
Q Consensus 216 G~~LaTGS~-DG~V~IWDl-~tg~~l~tl~gH~~-~I----------tsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~ 282 (1407)
+..|++++. ++.|..+|. .+|+.+..+..... .+ ..+++ ++..|+.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556777777 889999999 99999888753321 00 11222 35578888889999999999999988
Q ss_pred EEeccCCc-eEEEEeccCCCCCceEEEEEec------CCceeEEeeccccccceeeeccccccc----------------
Q psy6522 283 VLVGHQGI-ITGVNFCPLEVNGFNYLASTST------DGCIGFWKYKLDIDISKTVFHEPVMFN---------------- 339 (1407)
Q Consensus 283 ~l~~H~~~-VtsLafspd~~~~~~~LaSgs~------DGtI~vWDl~t~~~~~~~~~~~~~~~~---------------- 339 (1407)
........ -..+.-+|.- .+ ..+++++. ++.|..+|..+++.........+....
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 76532100 0011111110 01 35555554 789999999988655443322111000
Q ss_pred ----c-----c-cCCCCcceEEEEECCCCceEEEeeCC----------------ceEEEEeccCCCCCceeEEEe--ecC
Q psy6522 340 ----E-----R-IRPGNAHILCSSFSPGGLFLATGSGD----------------HHVRVYKMDGVDSPLGILEVE--EHS 391 (1407)
Q Consensus 340 ----~-----~-~~~h~~~I~~vafSpdg~~Lasgs~D----------------G~I~IwDl~~~~~~~~i~~l~--~h~ 391 (1407)
. . ..........+++.+....++.++.+ +.|..+|..+.. .+..+. .|.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~---~~W~~~~~~~d 294 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM---AKWGYQKTPHD 294 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC---EEEEEESSTTC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc---EEEEecCCCCc
Confidence 0 0 00010111235566666666665532 257888874322 222222 121
Q ss_pred C----Ccce---EEEcCCCC---EEEEEeCCCeEEEEEccCCceEEeeeccC-cC-------CCCCcccc----------
Q psy6522 392 D----KVDS---IQWSHSHL---RFVSGSRDGTALIWYYKCSQWRFIRLDMN-TC-------LPHTKETS---------- 443 (1407)
Q Consensus 392 ~----~V~s---IafSpdg~---~LaSgs~DGtI~IWDl~t~~~~~~~l~~~-~~-------~~~~~~~~---------- 443 (1407)
. .+.. +....+|+ .++.++.+|.+.++|..+++.+....... .. ........
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 1 1112 12223663 57788899999999999998654321100 00 00000000
Q ss_pred ---ccc--cccccEEEEEECCCCCEEEEEEe------------------------------------cCCeEEEEECCCC
Q psy6522 444 ---DET--NKKIKVTMVAWDASDRWVITAIN------------------------------------FNFQIKIWDAFNG 482 (1407)
Q Consensus 444 ---~~~--~~~~~VtslafSpdg~~Lasgs~------------------------------------~DG~I~IWDl~tg 482 (1407)
... .....-..++++|+...|++... .+|.|..||+.++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 000 00000124677888777777642 2578999999999
Q ss_pred ceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeee
Q psy6522 483 DLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 483 ~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~ 534 (1407)
+.+..+.... .+....+.. .+.+++.++.||.|+.||..++ +.+..+.
T Consensus 455 ~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG--~~lw~~~ 502 (571)
T 2ad6_A 455 KAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDG--KELWNFK 502 (571)
T ss_dssp CEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTC--CEEEEEE
T ss_pred CEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCC--CEEEEEe
Confidence 9888776332 222222333 4567788999999999999999 6666655
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.44 E-value=0.00016 Score=80.85 Aligned_cols=253 Identities=13% Similarity=0.028 Sum_probs=151.2
Q ss_pred CEEEEEECCCeEEEEeCCCCce-----EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec
Q psy6522 259 ILLAAGTVDKTIRIWNLQTLAP-----ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH 333 (1407)
Q Consensus 259 ~lLaSgs~DGtIrVWDl~tg~~-----v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~ 333 (1407)
.+|+.+. .+.|+.+++..... ...+......+.+++|.+.. +.++++-..++.|..+++...... .. .
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~~-~~-~- 74 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD---KVVYWTDISEPSIGRASLHGGEPT-TI-I- 74 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT---TEEEEEETTTTEEEEEESSSCCCE-EE-E-
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC---CEEEEEECCCCEEEEEecCCCCcE-EE-E-
Confidence 3455544 34788888865432 12222223456899999853 255555566788999988654211 11 0
Q ss_pred cccccccccCCCCcceEEEEECCCCceE-EEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeC-
Q psy6522 334 EPVMFNERIRPGNAHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR- 411 (1407)
Q Consensus 334 ~~~~~~~~~~~h~~~I~~vafSpdg~~L-asgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~- 411 (1407)
.........+++++++..| ++....+.|.++++++.. ...+ ..........+++++++..|+.+..
T Consensus 75 ---------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 75 ---------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp ---------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--ECSSCSSEEEEEEETTTTEEEEEECC
T ss_pred ---------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEE--EECCCCCccEEEEeeCCCEEEEEECC
Confidence 0112457889999965544 444557889999985322 1111 1112245688999997666655543
Q ss_pred --CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe
Q psy6522 412 --DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 489 (1407)
Q Consensus 412 --DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~ 489 (1407)
.+.|..+++......... .........+++++++..|+++....+.|.++|.........+.
T Consensus 143 ~~~~~I~~~~~dg~~~~~~~----------------~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 143 RDNPKIETSHMDGTNRRILA----------------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp SSSCEEEEEETTSCCCEEEE----------------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEEecCCCCcEEEE----------------ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 367877776543211110 01123467899999998888888767899999987654444443
Q ss_pred cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCC
Q psy6522 490 GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGT 555 (1407)
Q Consensus 490 gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~ 555 (1407)
+ ......+++. .+.++++....+.|.++|..++ +.+..+. .+ .......+++.|++.
T Consensus 207 ~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g--~~~~~i~---~g-~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 207 G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS--KEMDTFH---PH-KQTRLYGITIALSQC 263 (267)
T ss_dssp C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT--EEEEEEC---CS-SCCCCCCEEEECSCC
T ss_pred C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC--CceEEEc---cc-cccccceeeecCccC
Confidence 2 2334566653 3445555556689999999888 5555543 11 112467788888764
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.44 E-value=2.2e-05 Score=100.45 Aligned_cols=289 Identities=13% Similarity=0.079 Sum_probs=168.8
Q ss_pred CCEEEEEECCCeEEEEeCCCCceEEEEeccCCce-----------EEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 258 NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII-----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 258 g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~V-----------tsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
+..|++++.++.|..+|..+|+.+..+....... ..+.+. +..|++++.|+.|..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW------GDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE------BTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE------CCEEEEEcCCCEEEEEECCCCCE
Confidence 4467777778999999999999988875432110 112222 25788888999999999998865
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC------CceEEEEeccCCCCCceeEEEee-----------
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEE----------- 389 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~------DG~I~IwDl~~~~~~~~i~~l~~----------- 389 (1407)
........... ........+ +. ++ .++++.. +|.|..+|..+.. .+..+..
T Consensus 140 ~W~~~~~~~~~---~~~~~~~P~----v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W~~~~~~~~p~~~~~~ 207 (668)
T 1kv9_A 140 IWSQQTTDPAK---PYSITGAPR----VV-KG-KVIIGNGGAEYGVRGFVSAYDADTGK---LAWRFYTVPGDPALPYEH 207 (668)
T ss_dssp EEEEECSCTTS---SCBCCSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCC---EEEEEESSCCCTTSCCSS
T ss_pred eeeeccCCCCC---cceecCCCE----EE-CC-EEEEeCCCCCcCCCCEEEEEECCCCc---EEEEecccCCCCCccccc
Confidence 54443221100 000000111 11 33 4444432 5788888884332 2222211
Q ss_pred --------------------cCCCcceEEEcCCCCEEEEEeCCCe-------------------EEEEEccCCceEEeee
Q psy6522 390 --------------------HSDKVDSIQWSHSHLRFVSGSRDGT-------------------ALIWYYKCSQWRFIRL 430 (1407)
Q Consensus 390 --------------------h~~~V~sIafSpdg~~LaSgs~DGt-------------------I~IWDl~t~~~~~~~l 430 (1407)
+......+++++...+++.++.++. |..+|..+++.+-...
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~ 287 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ 287 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred cccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence 1112235788888888888887764 8999999988554322
Q ss_pred ccCcCCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEEecCCC------------Ce
Q psy6522 431 DMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHTN------------EV 495 (1407)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~---~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~------------~V 495 (1407)
..... . .. ...........+..+|+ .|++++. +|.|+++|..+|+++..+..... ++
T Consensus 288 ~~~~~-----~-wd-~~~~~~~~~~d~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~ 359 (668)
T 1kv9_A 288 VTPGD-----S-WD-FTATQQITLAELNIDGKPRKVLMQAPK-NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV 359 (668)
T ss_dssp SSTTC-----C-SC-CCCCSCEEEEEEEETTEEEEEEEECCT-TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred cCCCc-----c-cc-ccCCCCcEEEEeccCCcEEEEEEEECC-CCEEEEEECCCCCEeccccccccccccccccccCCcc
Confidence 10000 0 00 00111222222223564 4666665 99999999999998855432210 00
Q ss_pred ------------------------EEEEEecCCCCEEEEE------------------------------------eCCC
Q psy6522 496 ------------------------FVLESHPFDSRVLLSA------------------------------------GHDG 515 (1407)
Q Consensus 496 ------------------------~sLafsP~dg~~LaSg------------------------------------s~DG 515 (1407)
..++++| +..+++.. ..+|
T Consensus 360 ~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp ECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred ccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 1156777 44444431 1248
Q ss_pred cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 516 LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 516 ~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
.|..||+.++ +.+-.+.. ...+....+...+.+|++++.+|.|+.||..+|+.+..+.
T Consensus 439 ~l~A~D~~tG--~~~W~~~~------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 439 ALLAWDPVKQ--KAAWKVPY------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp EEEEEETTTT--EEEEEEEE------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCC--cEEEEccC------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 8999999998 55444431 1223334455578889999999999999999999876553
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.23 E-value=0.0016 Score=74.37 Aligned_cols=249 Identities=12% Similarity=-0.007 Sum_probs=144.2
Q ss_pred eeEEEEEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCC--eEE
Q psy6522 194 LRQHYVNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDK--TIR 271 (1407)
Q Consensus 194 ~~~~~~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DG--tIr 271 (1407)
.+....+..+ ....+++|+++|+++++-..++.|..||... .....+. ....+..|++.++|+++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 4444455333 4577999999999777766789999999765 4443333 345689999999999777665432 466
Q ss_pred EEeCCCCceEEEEec-cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 272 IWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 272 VWDl~tg~~v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
.++..+++....... .......++..+. ...+++-..++.|.++|...+.......... .. ............
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~----~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~-~~-~~~~~~~~~~pn 172 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD----TQYLTADSYRGAIWLIDVVQPSGSIWLEHPM-LA-RSNSESVFPAAN 172 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS----SEEEEEETTTTEEEEEETTTTEEEEEEECGG-GS-CSSTTCCSCSEE
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC----CcEEEEECCCCeEEEEeCCCCcEeEEEECCc-cc-cccccCCCCcCC
Confidence 777777765433321 1222344554432 2445554467888888765431100000000 00 000001112334
Q ss_pred EEEECCCCceEEEe-eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEee
Q psy6522 351 CSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 351 ~vafSpdg~~Lasg-s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~ 429 (1407)
.+ ++++.+|+++ ...+.|..|++...........+. .......|+++++|.++++....+.|.+++.. ++.....
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~ 248 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 248 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence 45 7777665554 557899999985322211111111 12456889999999887777778889999865 4432110
Q ss_pred eccCcCCCCCccccccccccccEEEEEEC---CCCCEEEEEEe
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWD---ASDRWVITAIN 469 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafS---pdg~~Lasgs~ 469 (1407)
. ........++++|. +++..|+++..
T Consensus 249 ~--------------~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 249 Q--------------AEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp C--------------GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred e--------------cccccCCceEEEEecccCCCCEEEEECC
Confidence 0 00112457889998 88888888775
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.22 E-value=0.00017 Score=81.48 Aligned_cols=210 Identities=10% Similarity=-0.047 Sum_probs=131.8
Q ss_pred eeEEEEEcCCCC--CEEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEeCCC-CCeEEEEEcCCCCEEEEE-ECC
Q psy6522 194 LRQHYVNLGHLS--AVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCS-GEISDIAIDNRNILLAAG-TVD 267 (1407)
Q Consensus 194 ~~~~~~L~GH~~--~V~~vafSpdG~~LaTGS~--DG~V~IWDl~tg~~l~tl~gH~-~~ItsLafSpDg~lLaSg-s~D 267 (1407)
++.+.++ .|.. ....++|++++.+.++.+. ++.|.++|+.+++.+.++.-.. .....+++. +..|+.+ -.+
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3444444 3443 3679999998754444443 5799999999999999876322 122345554 4455444 457
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
+.|.++|..+++.+..+...... ...+++++ ..|+++..++.|.++|..+.+........... ..-.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg----~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~-------~p~~ 152 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDG----KILYGSDGTSILYEIDPHTFKLIKKHNVKYNG-------HRVI 152 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECS----SSEEEECSSSEEEEECTTTCCEEEEEECEETT-------EECC
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECC----CEEEEECCCCeEEEEECCCCcEEEEEEECCCC-------cccc
Confidence 89999999999999888633111 23344544 44555567889999998876544443322100 0002
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec-------------CCCcceEEEcCCCCE-EEEEeCCC
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH-------------SDKVDSIQWSHSHLR-FVSGSRDG 413 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h-------------~~~V~sIafSpdg~~-LaSgs~DG 413 (1407)
.+..+.|. +|...+....++.|.+.|..+. ..+..+.-. ......|+|+++++. ++++...+
T Consensus 153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 153 RLNELEYI-NGEVWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CEEEEEEE-TTEEEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred cceeEEEE-CCEEEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 35667777 6765555556789999999433 223333211 124579999999875 55566778
Q ss_pred eEEEEEccCC
Q psy6522 414 TALIWYYKCS 423 (1407)
Q Consensus 414 tI~IWDl~t~ 423 (1407)
.|.+.++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8888887643
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.21 E-value=0.00022 Score=89.44 Aligned_cols=289 Identities=13% Similarity=0.007 Sum_probs=162.2
Q ss_pred CCEEEEEEC-CCeEEEEeC-CCCceEEEEeccCC-ce----------EEEEeccCCCCCceEEEEEecCCceeEEeeccc
Q psy6522 258 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQG-II----------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 324 (1407)
Q Consensus 258 g~lLaSgs~-DGtIrVWDl-~tg~~v~~l~~H~~-~V----------tsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~ 324 (1407)
+..|+.++. ++.|.-+|. .+|+.+..+..... .+ ..+++. +..|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG------AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE------TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE------CCEEEEEeCCCEEEEEECCCC
Confidence 345556666 788889999 88988877653221 00 112222 257888888999999999888
Q ss_pred cccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC------CceEEEEeccCCCCCceeEEEeecCC------
Q psy6522 325 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG------DHHVRVYKMDGVDSPLGILEVEEHSD------ 392 (1407)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~------DG~I~IwDl~~~~~~~~i~~l~~h~~------ 392 (1407)
+........... .........+ +. ++ .+++++. ++.|..+|..+.. .+..+.....
T Consensus 136 ~~~W~~~~~~~~---~~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~---~~W~~~~~~~~~~~~~ 203 (571)
T 2ad6_A 136 KINWEVEVCDPK---VGSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGE---LKWRAFATGSDDSVRL 203 (571)
T ss_dssp CEEEEEECCCGG---GTCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCC---EEEEEESSSCHHHHTB
T ss_pred CEEEEecCCCCC---ccceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCc---EEEEEccCCCcccccc
Confidence 655443322100 0000000111 11 34 4455544 6889999984332 2222211100
Q ss_pred --------------------------------CcceEEEcCCCCEEEEEeCC----------------CeEEEEEccCCc
Q psy6522 393 --------------------------------KVDSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 424 (1407)
Q Consensus 393 --------------------------------~V~sIafSpdg~~LaSgs~D----------------GtI~IWDl~t~~ 424 (1407)
....+++++....++.++.+ +.|..+|..+++
T Consensus 204 ~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~ 283 (571)
T 2ad6_A 204 AKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM 283 (571)
T ss_dssp CTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC
T ss_pred CcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc
Confidence 00235677776677766542 358999999887
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCC---EEEEEEecCCeEEEEECCCCceEEEEecCC---------
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT--------- 492 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~---~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~--------- 492 (1407)
.+-......... .........+. +....+|+ .++.+.. +|.++++|..+|+.+..+....
T Consensus 284 ~~W~~~~~~~d~------~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d 355 (571)
T 2ad6_A 284 AKWGYQKTPHDE------WDFAGVNQMVL-TDQPVNGKMTPLLSHIDR-NGILYTLNRENGNLIVAEKVDPAVNVFKKVD 355 (571)
T ss_dssp EEEEEESSTTCS------SCCCCCCCCEE-EEEEETTEEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred EEEEecCCCCcc------cccccCCCCEE-EecccCCcEEEEEEEeCC-CcEEEEEECCCCCEEeeecccCCcccccccc
Confidence 544321100000 00000111221 22224674 4555555 8999999999999887765321
Q ss_pred ----CCe--------------------------EEEEEecCCCCEEEEEe------------------------------
Q psy6522 493 ----NEV--------------------------FVLESHPFDSRVLLSAG------------------------------ 512 (1407)
Q Consensus 493 ----~~V--------------------------~sLafsP~dg~~LaSgs------------------------------ 512 (1407)
.+| ..++++| +..+|+...
T Consensus 356 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCceecccccCCCCCCCceEECCCCccccCCCCceECC-CCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 111 2356777 555555543
Q ss_pred -------CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 513 -------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 513 -------~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
.+|.|..||+.++ +.+..+.. ...+....+...+..+++++.+|.|+.||..+|+.+.++.
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG--~~~W~~~~------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTG--KAKWTKWE------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTC--CEEEEEEE------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCCeEEEEECCCC--CEEEEecC------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 3578999999988 55544431 1122222233356677789999999999999999876554
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.19 E-value=0.00042 Score=79.73 Aligned_cols=239 Identities=10% Similarity=-0.021 Sum_probs=137.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC--------------------CCCCeEEEEEcC-CCCEEEE
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG--------------------CSGEISDIAIDN-RNILLAA 263 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~g--------------------H~~~ItsLafSp-Dg~lLaS 263 (1407)
....+++|+++|++++++..++.|..|+..++... .+.. ....+..|++.+ ++. |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 34567889999998888888999999998766543 2221 013578999998 665 444
Q ss_pred EECCCeEEEEeCCCCceEEEEec-----cCCceEEEEecc-CCCCCceEEEEEec-----------------CCceeEEe
Q psy6522 264 GTVDKTIRIWNLQTLAPISVLVG-----HQGIITGVNFCP-LEVNGFNYLASTST-----------------DGCIGFWK 320 (1407)
Q Consensus 264 gs~DGtIrVWDl~tg~~v~~l~~-----H~~~VtsLafsp-d~~~~~~~LaSgs~-----------------DGtI~vWD 320 (1407)
+...+.|.++|..++... .+.. .......+++.+ ++ .+.++... ++.|..||
T Consensus 97 ~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G----~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTG----IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTC----CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCC----EEEEECCcccccccccceehcccCCCceEEEEe
Confidence 544555888888765432 2221 112467788887 65 55554332 24566666
Q ss_pred eccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe-eCCceEEEEeccCCCCCceeEEEeecCCCcceEEE
Q psy6522 321 YKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW 399 (1407)
Q Consensus 321 l~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg-s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIaf 399 (1407)
..++.... .. . . ......++|++++.+|+++ +..+.|.+|++.+.... ....+....+ ...|++
T Consensus 172 ~~~~~~~~-~~-~-------~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 172 PSTKETTL-LL-K-------E----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp TTTTEEEE-EE-E-------E----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEEEEECSS-EEEEEE
T ss_pred CCCCEEEE-ec-c-------C----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccceEEeCCC-CCCeEE
Confidence 54432110 00 0 0 0234568999999866555 55688999998542211 1111111223 678999
Q ss_pred cCCCCEEEEEeC----------CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe
Q psy6522 400 SHSHLRFVSGSR----------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN 469 (1407)
Q Consensus 400 Spdg~~LaSgs~----------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~ 469 (1407)
+++|.++++... .+.|..+|.. ++....... ... .....++++++ .++ .|++++.
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~-~~g-----------~~~~~~~~~~~-~~g-~L~v~~~ 301 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL-PPP-----------FAGEHFEQIQE-HDG-LLYIGTL 301 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC-CTT-----------TTTSCCCEEEE-ETT-EEEEECS
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC-CCC-----------CccccceEEEE-eCC-EEEEeec
Confidence 999986666544 4667777764 333221110 000 00123444555 244 4555544
Q ss_pred cCCeEEEEECC
Q psy6522 470 FNFQIKIWDAF 480 (1407)
Q Consensus 470 ~DG~I~IWDl~ 480 (1407)
.++.|.++++.
T Consensus 302 ~~~~i~~~~~~ 312 (322)
T 2fp8_A 302 FHGSVGILVYD 312 (322)
T ss_dssp SCSEEEEEEC-
T ss_pred CCCceEEEecc
Confidence 37888888875
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.13 E-value=0.00012 Score=82.60 Aligned_cols=192 Identities=8% Similarity=-0.039 Sum_probs=124.9
Q ss_pred cceEEEcCCCCEEEEEeC--CCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy6522 394 VDSIQWSHSHLRFVSGSR--DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 471 (1407)
Q Consensus 394 V~sIafSpdg~~LaSgs~--DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D 471 (1407)
...+.|++++.++++.+. ++.|.++|+.+++...... .. .......+++. +..|+.+...+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~--------------~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MD--------------DSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CC--------------TTCCEEEEEEE--TTEEEEEETTC
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cC--------------CCcceEEEEEe--CCEEEEEEecC
Confidence 468999998754444443 5799999999998655321 00 01111234443 66788888779
Q ss_pred CeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEEC
Q psy6522 472 FQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS 551 (1407)
Q Consensus 472 G~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafS 551 (1407)
+.+.++|..+++.+..+......- ..+++ |++.|+.+..++.|.++|..+. +.+..+..-..+.....++.+.|.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g--~glt~-Dg~~l~vs~gs~~l~viD~~t~--~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG--WGLAT-DGKILYGSDGTSILYEIDPHTF--KLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC--CEEEE-CSSSEEEECSSSEEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCe--EEEEE-CCCEEEEECCCCeEEEEECCCC--cEEEEEEECCCCcccccceeEEEE
Confidence 999999999999999886331222 23455 6665666667889999999887 555555421111122246788888
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCccccccC-------------------CceEecCCCcEEEecCCC--eeeEeeCCC
Q psy6522 552 PDGTTCALTDSYGHLLVYGLGGFKRPQNIP-------------------RELFFHTDYRTLNRPNGL--FEPTYDEVT 608 (1407)
Q Consensus 552 pDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp-------------------~~v~Fs~D~~~Lv~~~~~--~~~v~Dv~T 608 (1407)
+|..++..-.++.|.+.|..+++.+..++ ..++|.++++.+...... .+-+.|..+
T Consensus 161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 77655555567899999999998765543 367899998766644332 222445444
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.11 E-value=0.0017 Score=74.70 Aligned_cols=245 Identities=7% Similarity=-0.009 Sum_probs=144.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEec-------------------cCCceEEEEeccCCCCCceEE
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG-------------------HQGIITGVNFCPLEVNGFNYL 307 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~-------------------H~~~VtsLafspd~~~~~~~L 307 (1407)
....+++|++++++|+++..++.|..|+..++........ ....+.+|++.++. ..|
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~----g~l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN----NQL 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT----TEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC----CcE
Confidence 3456789999999788888899999999876543322110 01357889998622 345
Q ss_pred EEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeC-----------------Cce
Q psy6522 308 ASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSG-----------------DHH 369 (1407)
Q Consensus 308 aSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~-----------------DG~ 369 (1407)
+.+...+.|..+|..++.. ... .... . .........+++.+ +|.+.++... ++.
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~-~~~~---~---~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQL-ATSV---D---GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEE-ESEE---T---TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEe-cccC---C---CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 5554445577777654321 111 1000 0 00113467899999 8987665432 367
Q ss_pred EEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccc
Q psy6522 370 VRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNK 448 (1407)
Q Consensus 370 I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~ 448 (1407)
|..||..+.. +..+.........|+|++++..|+.+ +..+.|.+|++....... ...... .
T Consensus 167 v~~~d~~~~~----~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-----------~~~~~~---~ 228 (322)
T 2fp8_A 167 LIKYDPSTKE----TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-----------AEVLVK---I 228 (322)
T ss_dssp EEEEETTTTE----EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-----------EEEEEE---C
T ss_pred EEEEeCCCCE----EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-----------cceEEe---C
Confidence 7788763221 11122222345789999999866555 556889999887532000 000000 1
Q ss_pred cccEEEEEECCCCCEEEEEEe---------cCCeEEEEECCCCceEEEEecCC----CCeEEEEEecCCCCEEEEEeCCC
Q psy6522 449 KIKVTMVAWDASDRWVITAIN---------FNFQIKIWDAFNGDLVQVLKGHT----NEVFVLESHPFDSRVLLSAGHDG 515 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~---------~DG~I~IWDl~tg~~l~~l~gH~----~~V~sLafsP~dg~~LaSgs~DG 515 (1407)
.. ...++++++|.+.++... ..+.|..+|. .++.+..+.... ..++++++ . ++.++++....+
T Consensus 229 ~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~ 304 (322)
T 2fp8_A 229 PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHG 304 (322)
T ss_dssp SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCS
T ss_pred CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCC
Confidence 11 567899999985555432 0357888886 577777776543 34666666 3 566666666788
Q ss_pred cEEEEECCCC
Q psy6522 516 LIIIWDILSS 525 (1407)
Q Consensus 516 ~V~IWDi~sg 525 (1407)
.|.++++...
T Consensus 305 ~i~~~~~~~~ 314 (322)
T 2fp8_A 305 SVGILVYDKK 314 (322)
T ss_dssp EEEEEEC---
T ss_pred ceEEEecccc
Confidence 8999987644
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.11 E-value=0.0006 Score=85.91 Aligned_cols=294 Identities=11% Similarity=-0.016 Sum_probs=161.4
Q ss_pred CCEEEEEEC-CCeEEEEeC-CCCceEEEEeccCCc-----------eEEEEeccCCCCCceEEEEEecCCceeEEeeccc
Q psy6522 258 NILLAAGTV-DKTIRIWNL-QTLAPISVLVGHQGI-----------ITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLD 324 (1407)
Q Consensus 258 g~lLaSgs~-DGtIrVWDl-~tg~~v~~l~~H~~~-----------VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~ 324 (1407)
+..|++++. ++.|.-+|. .+|+.+..+...... ...+++.|........|++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 788888999 889888777533210 1223443322001133888889999999999888
Q ss_pred cccceeeeccccccccccCCCCcceEEEEECCCCceEEEee------CCceEEEEeccCCCCCceeEEEeecCC------
Q psy6522 325 IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS------GDHHVRVYKMDGVDSPLGILEVEEHSD------ 392 (1407)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs------~DG~I~IwDl~~~~~~~~i~~l~~h~~------ 392 (1407)
+..-........ .........+ +. ++ .+++++ .+|.|+.+|..+.. .+..+.....
T Consensus 142 ~~~W~~~~~~~~---~~~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~---~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDIK---VGSTLTIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKTGE---QVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCGG---GTCBCCSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTTCC---EEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCCC---ccceeecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCCCc---EEEEEcCCCCcccccc
Confidence 655443222100 0000000111 11 34 445554 37889999984332 2222221100
Q ss_pred -------------------------------Cc-ceEEEcCCCCEEEEEeCC----------------CeEEEEEccCCc
Q psy6522 393 -------------------------------KV-DSIQWSHSHLRFVSGSRD----------------GTALIWYYKCSQ 424 (1407)
Q Consensus 393 -------------------------------~V-~sIafSpdg~~LaSgs~D----------------GtI~IWDl~t~~ 424 (1407)
.+ ..+++.+...+++.++.+ +.|..+|..+++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 01 145677777788877765 379999999987
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEEC-CCC---CEEEEEEecCCeEEEEECCCCceEEEEecCC--------
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASD---RWVITAINFNFQIKIWDAFNGDLVQVLKGHT-------- 492 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS-pdg---~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~-------- 492 (1407)
.+-........ ..........+. +... .+| ..++.++. +|.|+++|..+|+++.......
T Consensus 290 ~~W~~q~~~~d------~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 290 AKFGYQKTPHD------EWDYAGVNVMML-SEQKDKDGKARKLLTHPDR-NGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEEEEESSTTC------SSCCCCCCCCEE-EEEECTTSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred eeeEeecCCCc------cccccCCCccEE-EeccccCCcEEEEEEEECC-CcEEEEEECCCCCEeecccccCCccccccc
Confidence 65432110000 000001111121 2222 466 34555555 9999999999999987664211
Q ss_pred -----CCe--------------------------EEEEEecCCCCEEEEE------------------------------
Q psy6522 493 -----NEV--------------------------FVLESHPFDSRVLLSA------------------------------ 511 (1407)
Q Consensus 493 -----~~V--------------------------~sLafsP~dg~~LaSg------------------------------ 511 (1407)
.++ ..++++| +..+|++.
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 011 1345666 44444332
Q ss_pred ---e------CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 512 ---G------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 512 ---s------~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
+ .+|.|..||+.++ +.+-.... . .++..-.....+.++++++.||.|+.||..+|+.+-++
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG--~~~W~~~~--~----~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG--DYKWEKME--R----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC--CEEEEEEE--S----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCcCCcccCCCcCeEEEEECCCC--CEEeEecC--C----CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 1 3478889999888 44444331 1 11111112235677788999999999999999987554
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.09 E-value=0.00013 Score=81.87 Aligned_cols=192 Identities=11% Similarity=0.040 Sum_probs=124.3
Q ss_pred ecCCC--cceEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEE
Q psy6522 389 EHSDK--VDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464 (1407)
Q Consensus 389 ~h~~~--V~sIafSpdg~~LaSgs~DG--tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L 464 (1407)
.|... ...|.|+ ++.++.+++.+| .|+++|+.+++...... . ........+.+++..|
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l----------------~~~~FgeGit~~g~~l 99 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-L----------------GKRYFGEGISDWKDKI 99 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-C----------------CTTCCEEEEEEETTEE
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-c----------------CCccceeEEEEeCCEE
Confidence 44443 3788898 666667777766 89999999998655331 0 0111111122346677
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCc
Q psy6522 465 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 544 (1407)
Q Consensus 465 asgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~ 544 (1407)
+.....++.+.+||..+++.+.++..... =..++ + ++..|+.+..++.|.++|..+. +.+..+.....+.....
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~glt--~-dg~~L~~SdGs~~i~~iDp~T~--~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGLT--H-NDQYLIMSDGTPVLRFLDPESL--TPVRTITVTAHGEELPE 173 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSC-CCCEE--E-CSSCEEECCSSSEEEEECTTTC--SEEEEEECEETTEECCC
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCCC-ceEEe--c-CCCEEEEECCCCeEEEEcCCCC--eEEEEEEeccCCccccc
Confidence 77777789999999999999999885332 23443 4 5565555555788999999988 66666552222222234
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC------------------CceEecCCCcEEEecCCCeeeEee
Q psy6522 545 LFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP------------------RELFFHTDYRTLNRPNGLFEPTYD 605 (1407)
Q Consensus 545 I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp------------------~~v~Fs~D~~~Lv~~~~~~~~v~D 605 (1407)
++.+.|. +|...|..-.++.|.+.|..+|+.+..+. +.++|.++.+.|......|-.+|.
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 5567776 77766655567899999999998754432 346777777666655555544443
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.07 E-value=0.00015 Score=92.56 Aligned_cols=282 Identities=11% Similarity=-0.005 Sum_probs=150.8
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEeCCCCce--EEEEec-cCCceEEEEeccCCCCCceEEEEEec-CC
Q psy6522 251 DIAIDN-RNILLAAGTVDK-----------TIRIWNLQTLAP--ISVLVG-HQGIITGVNFCPLEVNGFNYLASTST-DG 314 (1407)
Q Consensus 251 sLafSp-Dg~lLaSgs~DG-----------tIrVWDl~tg~~--v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~-DG 314 (1407)
++++.+ ++++++.|+.+. .+.+||+.+++. +..+.. +.....++++..++ .++++|+. +.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g----~lyv~GG~~~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG----QIVVTGGNDAK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS----CEEEECSSSTT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC----CEEEeCCCCCC
Confidence 566777 888999987643 688999987653 333322 23333456666654 78888884 45
Q ss_pred ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-CC-----ceEEEEeccCCCCCceeEEE-
Q psy6522 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GD-----HHVRVYKMDGVDSPLGILEV- 387 (1407)
Q Consensus 315 tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~D-----G~I~IwDl~~~~~~~~i~~l- 387 (1407)
.+.+||..+..-... .. +... ..-.++++.+++++++.|+ .+ ..+.+||.... ....+...
T Consensus 266 ~v~~yd~~t~~W~~~--~~--------~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-~W~~~~~~~ 333 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPG--PD--------MQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-TWTSLPNAK 333 (656)
T ss_dssp CEEEEEGGGTEEEEC--CC--------CSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-EEEEETTSC
T ss_pred ceEEecCcCCceeEC--CC--------CCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-cceeCCCcc
Confidence 789999876521111 00 0011 1123456667899999988 34 46889998432 11111000
Q ss_pred -eecCCCcceEEEcCCCCEEEEEeCCC---------eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEE
Q psy6522 388 -EEHSDKVDSIQWSHSHLRFVSGSRDG---------TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW 457 (1407)
Q Consensus 388 -~~h~~~V~sIafSpdg~~LaSgs~DG---------tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf 457 (1407)
......-....+..++..++.|+.+| .+..||..+..|.......... .........-.++.|
T Consensus 334 ~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~-------~~~~~~~~~~~av~~ 406 (656)
T 1k3i_A 334 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN-------RGVAPDAMCGNAVMY 406 (656)
T ss_dssp SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET-------TEECCCCBTCEEEEE
T ss_pred ccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc-------cccCCCCCCCceEec
Confidence 00000000111234455555555444 5678888877755321100000 000000112234444
Q ss_pred C-CCCCEEEEEEecCC-----------eEEEEECCCCceEEEE--ecCCCCe-EEEEEecCCCCEEEEEeCC--------
Q psy6522 458 D-ASDRWVITAINFNF-----------QIKIWDAFNGDLVQVL--KGHTNEV-FVLESHPFDSRVLLSAGHD-------- 514 (1407)
Q Consensus 458 S-pdg~~Lasgs~~DG-----------~I~IWDl~tg~~l~~l--~gH~~~V-~sLafsP~dg~~LaSgs~D-------- 514 (1407)
. .+++.+++++. ++ .|.+||..+..-.... ..+.... .+++..| ++++++.||.+
T Consensus 407 ~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 407 DAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp ETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCC
T ss_pred cCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCC
Confidence 3 36666666664 32 6888888776654443 2233322 3445667 89999999865
Q ss_pred ---CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeC
Q psy6522 515 ---GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDS 562 (1407)
Q Consensus 515 ---G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~ 562 (1407)
..+.+||..+.+-..+..+. ........+.+.+||++|++|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~-----~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNS-----IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCS-----SCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCC-----CccccccHhhcCCCcEEEecCCC
Confidence 46899998775211111111 11122334566799999999885
No 259
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.06 E-value=0.0013 Score=75.36 Aligned_cols=248 Identities=8% Similarity=-0.044 Sum_probs=139.5
Q ss_pred eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCc
Q psy6522 280 PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 359 (1407)
Q Consensus 280 ~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~ 359 (1407)
.+..+... ....+++|.+++ .++++...++.|..||..... .. ... ......++++.++|+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g----~lyv~d~~~~~I~~~d~~g~~--~~-~~~-----------~~~~p~gia~~~dG~ 84 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDG----TIFVTNHEVGEIVSITPDGNQ--QI-HAT-----------VEGKVSGLAFTSNGD 84 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTS----CEEEEETTTTEEEEECTTCCE--EE-EEE-----------CSSEEEEEEECTTSC
T ss_pred EeEeCCCC-CCcceEEECCCC----CEEEEeCCCCeEEEECCCCce--EE-EEe-----------CCCCceeEEEcCCCc
Confidence 34444322 456789999865 666666678889888876431 11 110 014578899999999
Q ss_pred eEEEeeCCc--eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCC
Q psy6522 360 FLATGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLP 437 (1407)
Q Consensus 360 ~Lasgs~DG--~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~ 437 (1407)
++++..... .|..++... .....+..+ ........++..+++..+++-..+|.|.++|...+.......... ..
T Consensus 85 l~vad~~~~~~~v~~~d~~~-g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~--~~ 160 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSD-GTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM--LA 160 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT-SCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG--GS
T ss_pred EEEEeccCCcceEEEEcCCC-CeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc--cc
Confidence 766654432 355556422 222222211 111223455555555445555468888888876543221111000 00
Q ss_pred CCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-Cce--EEEEecCCCCeEEEEEecCCCCEEEEEeCC
Q psy6522 438 HTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHD 514 (1407)
Q Consensus 438 ~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t-g~~--l~~l~gH~~~V~sLafsP~dg~~LaSgs~D 514 (1407)
.. ...........+ ++++++|+++....+.|.+|++.. +.. ...+.. ......|++.+ +++++++....
T Consensus 161 ~~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~ 232 (306)
T 2p4o_A 161 RS----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIY 232 (306)
T ss_dssp CS----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTT
T ss_pred cc----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCC
Confidence 00 000111123334 788988888877688999999864 332 112211 12355678888 88887777778
Q ss_pred CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEEC---CCCCEEEEEeCCC
Q psy6522 515 GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWS---PDGTTCALTDSYG 564 (1407)
Q Consensus 515 G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafS---pDG~~LAsgs~DG 564 (1407)
+.|.++|.. ++...+..+. .......+++|. +|+..|++++..+
T Consensus 233 ~~V~~~~~~-G~~~~~~~~~-----~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 233 NSVVRIAPD-RSTTIIAQAE-----QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CCEEEECTT-CCEEEEECGG-----GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CeEEEECCC-CCEEEEeecc-----cccCCceEEEEecccCCCCEEEEECCCC
Confidence 899999975 4211111111 122468899998 8988888777644
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.03 E-value=0.00034 Score=78.33 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCCC--EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCC
Q psy6522 194 LRQHYVNLGHLSA--VFCVLFDKLGEVIVTGADDL--LIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDK 268 (1407)
Q Consensus 194 ~~~~~~L~GH~~~--V~~vafSpdG~~LaTGS~DG--~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs-~DG 268 (1407)
++++.++ .|... ...+.|+ ++.+.++.+.+| .|+++|+.+++.+..+.... ......+.+++..|.... .++
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 4445555 44333 4688998 676667777766 89999999999999887433 333333333455555554 578
Q ss_pred eEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcc
Q psy6522 269 TIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAH 348 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~ 348 (1407)
.+.++|..+.+.+.++...... ..++ +++ ..|+.+..++.|.++|..+.+............ .-..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg----~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~-------~~~~ 173 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG-WGLT--HND----QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE-------ELPE 173 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC-CCEE--ECS----SCEEECCSSSEEEEECTTTCSEEEEEECEETTE-------ECCC
T ss_pred EEEEEECccCcEEEEEECCCCc-eEEe--cCC----CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc-------cccc
Confidence 9999999999999988753321 3344 433 555555557889999988775544433211000 0023
Q ss_pred eEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec------------CCCcceEEEcCCCCEEEEEeC
Q psy6522 349 ILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH------------SDKVDSIQWSHSHLRFVSGSR 411 (1407)
Q Consensus 349 I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h------------~~~V~sIafSpdg~~LaSgs~ 411 (1407)
++.+.|. +|.+.+..-.+..|.+.|..+. ..+..+... ..-.+.|+|+|+++.|++.+.
T Consensus 174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 174 LNELEWV-DGEIFANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cceeEEE-CCEEEEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4456665 6766655556778888888432 222222210 124578999999887777664
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.03 E-value=0.0049 Score=77.45 Aligned_cols=292 Identities=12% Similarity=0.002 Sum_probs=158.7
Q ss_pred CEEEEEECCCeEEEEeCCCCceEEEEeccCCce---------EEEEeccCCCCCceEEEEEecCCceeEEeeccccccce
Q psy6522 259 ILLAAGTVDKTIRIWNLQTLAPISVLVGHQGII---------TGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISK 329 (1407)
Q Consensus 259 ~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~V---------tsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~ 329 (1407)
..|++++.++.|.-+|..+|+.+..+....... ..+++. ...|++++.|+.|..+|..+++..-.
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~------~~~v~~~t~dg~l~AlD~~TG~~~W~ 142 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY------GDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE------TTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE------CCEEEEEeCCCEEEEEECCCCCEEee
Confidence 345555554458889999999888776433210 112221 25778888999999999988865544
Q ss_pred eeeccccccccccCCCCcceEEEEEC-CCCc-eEEEeeC------CceEEEEeccCCCCCceeEEEeec-----------
Q psy6522 330 TVFHEPVMFNERIRPGNAHILCSSFS-PGGL-FLATGSG------DHHVRVYKMDGVDSPLGILEVEEH----------- 390 (1407)
Q Consensus 330 ~~~~~~~~~~~~~~~h~~~I~~vafS-pdg~-~Lasgs~------DG~I~IwDl~~~~~~~~i~~l~~h----------- 390 (1407)
........ .......++ +.=. .+|+ .+++++. ++.|..+|..+... +......
T Consensus 143 ~~~~~~~~---~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~---~W~~~~~~~~~~p~~~~~ 214 (582)
T 1flg_A 143 KKFADHGA---GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE---IWMRPFVEGHMGRLNGKD 214 (582)
T ss_dssp EECSCGGG---TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE---EEEEESSTTCEEEETTEE
T ss_pred ecCCCCCc---CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE---EeecCCCccccccccCcc
Confidence 33221100 000001111 1111 1232 4555542 67888888743321 1111100
Q ss_pred ------------------------------CCCcceEEEcCCCCEEEEEeC--------------------C----CeEE
Q psy6522 391 ------------------------------SDKVDSIQWSHSHLRFVSGSR--------------------D----GTAL 416 (1407)
Q Consensus 391 ------------------------------~~~V~sIafSpdg~~LaSgs~--------------------D----GtI~ 416 (1407)
...-..+++++...+|+.++. | +.|.
T Consensus 215 ~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~ 294 (582)
T 1flg_A 215 STVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQV 294 (582)
T ss_dssp EEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEE
T ss_pred cccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEE
Confidence 000124567777777777663 2 5899
Q ss_pred EEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEEC-CCCC---EEEEEEecCCeEEEEECCCCceEEEEecCC
Q psy6522 417 IWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD-ASDR---WVITAINFNFQIKIWDAFNGDLVQVLKGHT 492 (1407)
Q Consensus 417 IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS-pdg~---~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~ 492 (1407)
.+|..+++.+-........ ..........+. +... .+|+ .|+.++. +|.|+++|..+|+++..+....
T Consensus 295 AlD~~TG~~~W~~q~~~~d------~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~-~G~l~~lD~~tG~~lw~~~~~~ 366 (582)
T 1flg_A 295 GVDPSSGEVKWFYQHTPND------AWDFSGNNELVL-FDYKAKDGKIVKATAHADR-NGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp EECTTTCCEEEEEESSTTC------CSCCCCCCCCEE-EEEECSSSCEEEEEEEECT-TSEEEEEETTTCCEEEEEESSS
T ss_pred EEeCCCCCEEEEEeCCCCC------cccccCCCCcEE-EeeecCCCCEEEEEEEECC-CceEEEEECCCCCEeccccccc
Confidence 9999998865432110000 000000111221 2221 4664 5556665 9999999999999987765432
Q ss_pred C-------------Ce--------------------------------EEEEEecCCCCEEEEEe---------------
Q psy6522 493 N-------------EV--------------------------------FVLESHPFDSRVLLSAG--------------- 512 (1407)
Q Consensus 493 ~-------------~V--------------------------------~sLafsP~dg~~LaSgs--------------- 512 (1407)
. ++ ..++++| +..+|++..
T Consensus 367 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQ-DTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECT-TTCCEEEEEECEEEEEEECCCCCC
T ss_pred CccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECC-CCCEEEEechhcceeeeccccccc
Confidence 0 00 1235566 333333322
Q ss_pred ------------------CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 513 ------------------HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 513 ------------------~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
.+|.|..||+.++ +.+-.+... ..+........+.++++++.||.|+.||..+|
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG--~~~W~~~~~------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG--KVVWEHKEH------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTC--CEEEEEEES------SCCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCC--CEEEEecCC------CCCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 2688999999998 544443311 11111112224677888999999999999999
Q ss_pred ccccccC
Q psy6522 575 KRPQNIP 581 (1407)
Q Consensus 575 ~~~~~lp 581 (1407)
+.+-++.
T Consensus 518 ~~lW~~~ 524 (582)
T 1flg_A 518 KELWKFQ 524 (582)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 9876543
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.95 E-value=0.011 Score=68.39 Aligned_cols=276 Identities=12% Similarity=0.030 Sum_probs=145.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe----ccCCceEEEEeccCCCCCceEEEEEecCCceeEEee
Q psy6522 246 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKY 321 (1407)
Q Consensus 246 ~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~----~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl 321 (1407)
...+.+|.|.+++..+++ +..|.| +.....|+.-..+. .....+.+|.|.+ . ..++ ++..+.| |..
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~----~~~~-~g~~g~i--~~S 104 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N----EGWI-VGEPPIM--LHT 104 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T----EEEE-EEETTEE--EEE
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C----eEEE-EECCCeE--EEE
Confidence 457899999888877775 456765 33344343222221 1244688899875 2 3444 4555643 322
Q ss_pred cc-ccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEc
Q psy6522 322 KL-DIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 322 ~t-~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafS 400 (1407)
.. +..-...... ......+..+.+.+++..++++. +|.|.. ..+.......+ ...+...+..+.+.
T Consensus 105 ~DgG~tW~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~--~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 105 TDGGQSWSQIPLD---------PKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQAL--VQEAIGVMRNLNRS 171 (327)
T ss_dssp SSTTSSCEECCCC---------TTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEE--ECSCCCCEEEEEEC
T ss_pred CCCCCCceECccc---------cCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEe--ecCCCcceEEEEEc
Confidence 22 2111111100 01123466777777777666554 454321 11122222222 22345578899999
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 401 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 401 pdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
+++.+++++...+..+-+|-....|.... ......+..+++++++..+++ +. +|.|++.+..
T Consensus 172 ~~~~~~~~g~~G~~~~S~d~gG~tW~~~~----------------~~~~~~~~~~~~~~~g~~~~~-~~-~G~~~~s~~D 233 (327)
T 2xbg_A 172 PSGEYVAVSSRGSFYSTWEPGQTAWEPHN----------------RTTSRRLHNMGFTPDGRLWMI-VN-GGKIAFSDPD 233 (327)
T ss_dssp TTSCEEEEETTSSEEEEECTTCSSCEEEE----------------CCSSSCEEEEEECTTSCEEEE-ET-TTEEEEEETT
T ss_pred CCCcEEEEECCCcEEEEeCCCCCceeECC----------------CCCCCccceeEECCCCCEEEE-eC-CceEEEecCC
Confidence 99887776644433333332122333221 112346778889998876544 44 7888776533
Q ss_pred CCceEEEEe-c---CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCE
Q psy6522 481 NGDLVQVLK-G---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTT 556 (1407)
Q Consensus 481 tg~~l~~l~-g---H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~ 556 (1407)
.++.-..+. . +...+.++++.+ ++.+++++ .+|.| ++....+ ..-..+.. .......+.++.|.+++.
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g-~~g~i-~~S~DgG--~tW~~~~~--~~~~~~~~~~v~~~~~~~- 305 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAG-GAGAL-LCSQDGG--QTWQQDVD--VKKVPSNFYKILFFSPDQ- 305 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEE-STTCE-EEESSTT--SSCEECGG--GTTSSSCCCEEEEEETTE-
T ss_pred CCCeeEeccCCcccCCcceEEEEecC-CCEEEEEe-CCCeE-EEeCCCC--cccEEcCc--cCCCCCCeEEEEEECCCc-
Confidence 233322222 1 223588999987 66666554 57776 4555545 22222210 001235678898875554
Q ss_pred EEEEeCCCeEEEEE
Q psy6522 557 CALTDSYGHLLVYG 570 (1407)
Q Consensus 557 LAsgs~DG~I~Iwd 570 (1407)
+++++.+|.|.-++
T Consensus 306 ~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGILLRYV 319 (327)
T ss_dssp EEEECSTTEEEEEC
T ss_pred eEEEcCCceEEEEc
Confidence 66666778877665
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.92 E-value=0.00086 Score=86.93 Aligned_cols=246 Identities=11% Similarity=-0.009 Sum_probs=127.4
Q ss_pred CeEEEEEc-CCCCEEEEEEC-C----CeEEEEeCCCC-ceEE-EEeccCCceEEEEeccCCCCCceEEEEEecCC-----
Q psy6522 248 EISDIAID-NRNILLAAGTV-D----KTIRIWNLQTL-APIS-VLVGHQGIITGVNFCPLEVNGFNYLASTSTDG----- 314 (1407)
Q Consensus 248 ~ItsLafS-pDg~lLaSgs~-D----GtIrVWDl~tg-~~v~-~l~~H~~~VtsLafspd~~~~~~~LaSgs~DG----- 314 (1407)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+. .+. ....++.|+|++ +.|+....+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg----~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDH----TSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSST----TEEEEEEECTTCCEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCC----CEEEEEEECCCCCCC
Confidence 67889999 99998886543 2 25999999998 6321 111 123468899976 5666666542
Q ss_pred ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC---CceEEEEeccCCCCCceeEEE-eec
Q psy6522 315 CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG---DHHVRVYKMDGVDSPLGILEV-EEH 390 (1407)
Q Consensus 315 tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~---DG~I~IwDl~~~~~~~~i~~l-~~h 390 (1407)
.|.++++.++.......... ........+.|+|||++|+..+. ...|.++|+.+......+..+ ...
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~ 318 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEE---------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE 318 (751)
T ss_dssp EEEEEETTSCGGGCEEEEEC---------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC
T ss_pred EEEEEECCCCchhcEEEEec---------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC
Confidence 46666665542211111110 11234567899999998887653 456888888543111100222 223
Q ss_pred CCCcceEEEcCCCCEEEEEeCC--C--eEEEEEccC-CceEE-eeeccCcCCCCCccccccccccccEEEEEECCCCCEE
Q psy6522 391 SDKVDSIQWSHSHLRFVSGSRD--G--TALIWYYKC-SQWRF-IRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464 (1407)
Q Consensus 391 ~~~V~sIafSpdg~~LaSgs~D--G--tI~IWDl~t-~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L 464 (1407)
.....++.|+..+.+++....+ + .|.++++.+ +.+.. +. .......+..+.+. +..|
T Consensus 319 ~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li---------------~~~~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 319 KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV---------------DHSEDVFMESIAVR--SNYL 381 (751)
T ss_dssp TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE---------------CCCSSEEEEEEEEC--SSEE
T ss_pred CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE---------------CCCCCcEEEEEEEE--CCEE
Confidence 3444555554433344444443 2 455556543 22111 10 00112234555554 5566
Q ss_pred EEEEecCCe--EEEEEC-------CCCceEEEEecCC-CCeEEEEE----ecCCCCEEEEEeCC---CcEEEEECCCCC
Q psy6522 465 ITAINFNFQ--IKIWDA-------FNGDLVQVLKGHT-NEVFVLES----HPFDSRVLLSAGHD---GLIIIWDILSSK 526 (1407)
Q Consensus 465 asgs~~DG~--I~IWDl-------~tg~~l~~l~gH~-~~V~sLaf----sP~dg~~LaSgs~D---G~V~IWDi~sgk 526 (1407)
++....++. |.++++ .+++.+..+.... ..+..+.+ ++....++++.+.. +.|..+|+.+++
T Consensus 382 v~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 655554775 556665 3444133332111 22333322 33234455555543 467778887763
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.0024 Score=77.16 Aligned_cols=256 Identities=8% Similarity=-0.022 Sum_probs=138.9
Q ss_pred CEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECC-C----eEEEEeCCCCc
Q psy6522 206 AVFCVLFDK-LGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD-K----TIRIWNLQTLA 279 (1407)
Q Consensus 206 ~V~~vafSp-dG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D-G----tIrVWDl~tg~ 279 (1407)
....|+|+| ++..|+++...+.|..+|+.++.... +.........|+|++++++|+.+... + .+.+.+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457899998 45566666555889999987766544 33355678999999999966665542 1 2333343 332
Q ss_pred eE--EEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC
Q psy6522 280 PI--SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357 (1407)
Q Consensus 280 ~v--~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd 357 (1407)
.. ..+.. ......+++.|+. +.++++-..++.|..++....... .... .........++|+|+
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~---g~lyv~d~~~~~V~~~~~~~~~~~--~~~~---------~~~~~~P~gia~~pd 280 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPIN---GELYFNSWNAGQVFRYDFTTQETT--PLFT---------IQDSGWEFHIQFHPS 280 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTT---CCEEEEETTTTEEEEEETTTTEEE--EEEE---------CSSSSCCEEEEECTT
T ss_pred eeeeeeecc-CCCceEEEEeCCC---CEEEEEECCCCEEEEEECCCCcEE--EEEE---------cCCCCcceeEEEcCC
Confidence 22 23322 2334678888832 256666667788888887654221 1100 011134578999999
Q ss_pred CceE-EEeeCCceEEEEeccCCCC-CceeEEEeec---C------------CCcc-eEEEc--------CCCCEEEEEeC
Q psy6522 358 GLFL-ATGSGDHHVRVYKMDGVDS-PLGILEVEEH---S------------DKVD-SIQWS--------HSHLRFVSGSR 411 (1407)
Q Consensus 358 g~~L-asgs~DG~I~IwDl~~~~~-~~~i~~l~~h---~------------~~V~-sIafS--------pdg~~LaSgs~ 411 (1407)
|++| ++-...+.|..++.+.... ...+..+.+. . .... .++.. +++.++++-..
T Consensus 281 G~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~ 360 (430)
T 3tc9_A 281 GNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE 360 (430)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG
T ss_pred CCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC
Confidence 9954 4445678899988753211 1111111111 0 0112 34442 33555555555
Q ss_pred CCeEEEEEccCCceEEeeeccCcCCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 412 DGTALIWYYKCSQWRFIRLDMNTCLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 412 DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
.+.|+.++. .+....+.-.-.........- ......-.....|++++++..|+++...++.|+.+++
T Consensus 361 n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 361 NHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp GTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 677777773 343322211100000000000 0001122356889999976666666655778888765
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.90 E-value=0.00062 Score=86.80 Aligned_cols=275 Identities=12% Similarity=0.045 Sum_probs=150.3
Q ss_pred EEEecc-CCCCCceEEEEEecCC-----------ceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce
Q psy6522 293 GVNFCP-LEVNGFNYLASTSTDG-----------CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360 (1407)
Q Consensus 293 sLafsp-d~~~~~~~LaSgs~DG-----------tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~ 360 (1407)
++++.+ ++ .+++.|+.+. .+.+||+.++.-....... .++.....++++..++.+
T Consensus 190 ~~av~~~~g----~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------~~~~~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSG----RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------TKHDMFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTT----EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------CSCCCSSCEEEECTTSCE
T ss_pred eEEEEecCC----EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------CCCCCccccccCCCCCCE
Confidence 556665 43 7888887543 4778887766322211111 112233345778889999
Q ss_pred EEEeeC-CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CC-----CeEEEEEccCCceEEeeeccC
Q psy6522 361 LATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RD-----GTALIWYYKCSQWRFIRLDMN 433 (1407)
Q Consensus 361 Lasgs~-DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~D-----GtI~IWDl~t~~~~~~~l~~~ 433 (1407)
+++|+. +..+.+||.... ....+..+.. ...-.++++.+++++++.|+ .+ ..+.+||..++.|..+.....
T Consensus 257 yv~GG~~~~~v~~yd~~t~-~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSD-SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EEECSSSTTCEEEEEGGGT-EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred EEeCCCCCCceEEecCcCC-ceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 999884 458999998432 2222211111 11123456667899999888 44 569999999998876421000
Q ss_pred cCCCCCccccccccccccEEEEEECCCCCEEEEEEe--------cCCeEEEEECCCCceEEEEecCCC---------CeE
Q psy6522 434 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN--------FNFQIKIWDAFNGDLVQVLKGHTN---------EVF 496 (1407)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~--------~DG~I~IWDl~tg~~l~~l~gH~~---------~V~ 496 (1407)
...... .+. .++..++..++.++. ....+..||..+.........+.. .-.
T Consensus 335 ~p~~~~-------~~~-----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 335 NPMLTA-------DKQ-----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp GGGCCC-------CTT-----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred cccccc-------ccc-----ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 000000 000 011223333333322 134678899887764443332211 234
Q ss_pred EEEEecCCCCEEEEEeCCC-----------cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC--
Q psy6522 497 VLESHPFDSRVLLSAGHDG-----------LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY-- 563 (1407)
Q Consensus 497 sLafsP~dg~~LaSgs~DG-----------~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D-- 563 (1407)
++.+...++++++.||.++ .|.+||..+. .-...... .......-.+++..|+|+++++|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~--~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--PNTVFASN--GLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--CEEEECTT--CCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--CeeEEccC--CCCCCcccCCeEECCCCCEEEECCcccC
Confidence 4555444778888888643 6778887665 21111000 00111123455778899999999854
Q ss_pred ---------CeEEEEEcCCCcc--ccccCC------ceEecCCCcEEEecCC
Q psy6522 564 ---------GHLLVYGLGGFKR--PQNIPR------ELFFHTDYRTLNRPNG 598 (1407)
Q Consensus 564 ---------G~I~Iwdl~sg~~--~~~lp~------~v~Fs~D~~~Lv~~~~ 598 (1407)
..+.+||..+++- +..++. ...+.+|++.++...+
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999877652 222221 2345678888886553
No 266
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.89 E-value=0.0088 Score=70.02 Aligned_cols=238 Identities=13% Similarity=-0.053 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccc
Q psy6522 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 328 (1407)
Q Consensus 249 ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~ 328 (1407)
.+|.+..++. +|+.+ ....|+..++........+. ....+..++|.+.. +.++++-...+.|..+++.......
T Consensus 36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~---~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRR---ELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcccccccCc-eeEee-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccc---cEEEEEeccCCceEEEecCCCCceE
Confidence 4455555543 44333 34568888887655444443 33457899998743 2455555567788888876542111
Q ss_pred eeeeccccccccccCCCCcceEEEEECCC-CceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEE
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 407 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~La 407 (1407)
. . . ........+++.+. +.++++-...+.|.++++++.. . ...+.........|+++|.+..|+
T Consensus 110 ~-~-~----------~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~-~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 110 V-V-S----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--R-KVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp E-E-C----------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEEECTTCSCEEEEEEETTTTEEE
T ss_pred E-E-e----------CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--e-EEEEeCCCCCcceEEEecCcCeEE
Confidence 1 0 0 11133467888875 4455555667889999985432 1 111222334568899998666555
Q ss_pred EEe-CC-CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy6522 408 SGS-RD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 485 (1407)
Q Consensus 408 Sgs-~D-GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l 485 (1407)
... .. +.|..+++.......+. .........|++++++..|+.+....+.|..+|+......
T Consensus 175 ~td~~~~~~I~r~~~dG~~~~~~~----------------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~ 238 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGRRIIA----------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238 (349)
T ss_dssp EEECSSSCEEEEEETTSCSCEESC----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred EeccCCCCEEEEEeCCCCCcEEEE----------------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence 444 34 67777776543321110 0122346789999998888888776789999998654444
Q ss_pred EEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 486 ~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..+.........|++. .+.++++-...+.|..++..++
T Consensus 239 ~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 239 AVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCC
Confidence 4444444566778873 4566666667788888886666
No 267
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.88 E-value=0.0027 Score=71.17 Aligned_cols=209 Identities=10% Similarity=0.100 Sum_probs=133.7
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcEEEEEeC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEeC
Q psy6522 198 YVNLGHLSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRG-CSGEISDIAIDNRNILLAAGTVDKTIRIWNL 275 (1407)
Q Consensus 198 ~~L~GH~~~V~~vafSpdG~~La-TGS~DG~V~IWDl~tg~~l~tl~g-H~~~ItsLafSpDg~lLaSgs~DGtIrVWDl 275 (1407)
+.+.|-...+..++|+|+++.|+ +...++.|...|+. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 56677778899999999876555 46778899999987 888888742 2356788899999987777656788999988
Q ss_pred CCCce---EEEEe------ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccccc--ceeeeccccccccccCC
Q psy6522 276 QTLAP---ISVLV------GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI--SKTVFHEPVMFNERIRP 344 (1407)
Q Consensus 276 ~tg~~---v~~l~------~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~--~~~~~~~~~~~~~~~~~ 344 (1407)
..... +.... .+......|+|.|.+ +.|+++.......+|.+...... .... ..+. +.. ..
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~----~~L~va~E~~p~~i~~~~g~~~~~~l~i~-~~~~-~~~--~~ 170 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD----HTFWFFKEKNPIEVYKVNGLLSSNELHIS-KDKA-LQR--QF 170 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT----TEEEEEEESSSEEEEEEESTTCSSCCEEE-ECHH-HHH--TC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCC----CEEEEEECcCCceEEEEcccccCCceeee-cchh-hcc--cc
Confidence 65432 22222 123456899999965 56777777666777776521000 0111 0000 000 11
Q ss_pred CCcceEEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeEEEee-c------CCCcceEEEcCCCCEEEEEeCCCeEE
Q psy6522 345 GNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEE-H------SDKVDSIQWSHSHLRFVSGSRDGTAL 416 (1407)
Q Consensus 345 h~~~I~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~-h------~~~V~sIafSpdg~~LaSgs~DGtI~ 416 (1407)
....+..++++|.. .+++.......|.++|..+ .......+.. . -..--.|+|.++|+++++ +..+.++
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y 247 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFY 247 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEE
Confidence 12456889999954 5566666678888888742 2344444432 1 125678999999985555 6666555
Q ss_pred EE
Q psy6522 417 IW 418 (1407)
Q Consensus 417 IW 418 (1407)
.+
T Consensus 248 ~f 249 (255)
T 3qqz_A 248 RF 249 (255)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.0058 Score=71.56 Aligned_cols=247 Identities=11% Similarity=-0.011 Sum_probs=146.0
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEeCCCCceEEE
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQTLAPISV 283 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLa-Sgs~DGtIrVWDl~tg~~v~~ 283 (1407)
+..+|.+..+++ +|+.+. ...|+..++........+.+ ...+..|+|++.+..|+ +-...+.|..+++........
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 110 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 110 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence 334577776644 444333 44688888876655444443 44588999997655555 444578899999987655444
Q ss_pred EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEE
Q psy6522 284 LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLAT 363 (1407)
Q Consensus 284 l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Las 363 (1407)
+.........+++.+.. +.++++-...+.|.+.++..... ..... ........++++|.+..|+.
T Consensus 111 ~~~~~~~p~glavd~~~---g~ly~~d~~~~~I~~~~~dG~~~--~~l~~----------~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVH---DKLYWTDSGTSRIEVANLDGAHR--KVLLW----------QSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp ECSSCSCCCEEEEETTT---TEEEEEETTTTEEEEEETTSCSC--EEEEC----------TTCSCEEEEEEETTTTEEEE
T ss_pred EeCCCCCccEEEEecCC---CeEEEEcCCCCeEEEEcCCCCce--EEEEe----------CCCCCcceEEEecCcCeEEE
Confidence 44333455788887643 35556666677888888765421 11110 11245688999986555544
Q ss_pred e-eCC-ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCc
Q psy6522 364 G-SGD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTK 440 (1407)
Q Consensus 364 g-s~D-G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~ 440 (1407)
. ... +.|..+++++.... .+ ....-.....|++++++..|+.+ ...+.|..+++.......+..
T Consensus 176 td~~~~~~I~r~~~dG~~~~-~~--~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---------- 242 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRR-II--ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------- 242 (349)
T ss_dssp EECSSSCEEEEEETTSCSCE-ES--CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------
T ss_pred eccCCCCEEEEEeCCCCCcE-EE--EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe----------
Confidence 4 444 77888887543211 11 11223346789999877666555 456788888876543221110
Q ss_pred cccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec
Q psy6522 441 ETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 490 (1407)
Q Consensus 441 ~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g 490 (1407)
........+++ ++..|+.+....+.|..++..+|+.+..+..
T Consensus 243 ------~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 243 ------QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp ------SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ------CCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCCccEEecc
Confidence 01123455666 3446666665578888888777776666553
No 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.86 E-value=0.15 Score=64.29 Aligned_cols=344 Identities=11% Similarity=-0.051 Sum_probs=185.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTL 278 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS~--DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs-~DGtIrVWDl~tg 278 (1407)
+.......|+++|.+.+|+.... .+.|...+++.......+...-...+.|++++++..|..+. ..+.|...++...
T Consensus 124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 44456778999998666665543 35677777654333333333445678999999766665554 4578888888754
Q ss_pred ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec--ccc--cccc--------------
Q psy6522 279 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPV--MFNE-------------- 340 (1407)
Q Consensus 279 ~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~--~~~--~~~~-------------- 340 (1407)
.....+.+......+|++..+ .++++-..++.|...|..++......... .|. ....
T Consensus 204 ~~~~~~~~~~~~P~gi~~~~~-----~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ 278 (619)
T 3s94_A 204 NRQAVVKGSLPHPFALTLFED-----ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID 278 (619)
T ss_dssp EEC---------CCCEEESSS-----EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred ccEEEEeCCCCCceEEEEeCC-----EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence 333332212222345666442 44444455677877777655432211110 000 0000
Q ss_pred --------ccCCCCcceEEEEE-----CCCC--------ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEE
Q psy6522 341 --------RIRPGNAHILCSSF-----SPGG--------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQW 399 (1407)
Q Consensus 341 --------~~~~h~~~I~~vaf-----Spdg--------~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIaf 399 (1407)
...+......|.|. .+++ .+|+.+ ..+.|+..++...........+. .-..+..|+|
T Consensus 279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~ 356 (619)
T 3s94_A 279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDY 356 (619)
T ss_dssp GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEE
T ss_pred CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEecc-ccCccEEEEE
Confidence 00000011222221 1121 133333 33466666774332211111111 1234678889
Q ss_pred cCCCCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEE
Q psy6522 400 SHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWD 478 (1407)
Q Consensus 400 Spdg~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWD 478 (1407)
++.+..|+.+ ...+.|+.+++.......+. .........++++..+..|+.+....+.|.+.+
T Consensus 357 d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~----------------~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 357 DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------------TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCeEEEEeCCCCeEEEEEcCCCccEEEE----------------ECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 8865555444 45778888877654322211 011123456888877777777766578999999
Q ss_pred CCCCceEEEEecCCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEE
Q psy6522 479 AFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAG-HDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTC 557 (1407)
Q Consensus 479 l~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs-~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~L 557 (1407)
+........+...-.....|++.|..+.+++|-. ..+.|...++... . ...+. ...-.....+++++++..|
T Consensus 421 ~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~--~-~~~l~----~~~l~~P~GlalD~~~~~L 493 (619)
T 3s94_A 421 LNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS--D-RVVLV----NTSLGWPNGLALDYDEGKI 493 (619)
T ss_dssp TTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--S-CEEEE----CSSCSCEEEEEEETTTTEE
T ss_pred CCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC--c-cEEEE----eCCCCCCeeeEEcccCCEE
Confidence 8654433333334456789999994455555542 2367777777543 1 11221 1224567899999988888
Q ss_pred EEEeCC-CeEEEEEcCCCc
Q psy6522 558 ALTDSY-GHLLVYGLGGFK 575 (1407)
Q Consensus 558 Asgs~D-G~I~Iwdl~sg~ 575 (1407)
..++.. +.|..+++....
T Consensus 494 Y~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 494 YWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEEETTTTEEEEEESSSCC
T ss_pred EEEECCCCEEEEEecCCCc
Confidence 877654 678899986543
No 270
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.86 E-value=0.00047 Score=77.27 Aligned_cols=161 Identities=11% Similarity=-0.040 Sum_probs=110.4
Q ss_pred cceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCe
Q psy6522 394 VDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ 473 (1407)
Q Consensus 394 V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~ 473 (1407)
...|.|+ ++.++++.+.+|.|+++|+.+++.....+ . ....--.+++ ++..|+.....++.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--~--------------~~~FgeGit~--~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER--L--------------GNIFAEGLAS--DGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE--C--------------TTCCEEEEEE--CSSCEEEEESSSCE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC--C--------------CCcceeEEEE--eCCEEEEEEccCCE
Confidence 3678887 35677778888999999999988544321 0 0011112343 45667777766899
Q ss_pred EEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCC
Q psy6522 474 IKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPD 553 (1407)
Q Consensus 474 I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpD 553 (1407)
+.+||..+++.+.++.... .-+.++ + +++.|+.+..++.|.++|..+. +.+..+.....+.....++.+.|. +
T Consensus 118 v~V~D~~Tl~~~~ti~~~~-eGwGLt--~-Dg~~L~vSdGs~~l~~iDp~T~--~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSG-EGWGLC--Y-WNGKLVRSDGGTMLTFHEPDGF--ALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCCEE--E-ETTEEEEECSSSEEEEECTTTC--CEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEECCcCcEEEEEeCCC-ceeEEe--c-CCCEEEEECCCCEEEEEcCCCC--eEEEEEEeCCCCcccccccccEEe-C
Confidence 9999999999999988532 224454 4 5677777667889999999988 666666532222223356777877 7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 554 GTTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 554 G~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
|..+|..-.++.|.+.|..+|+.+..+
T Consensus 191 G~lyanvw~s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence 765555556789999999999876544
No 271
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.85 E-value=0.16 Score=64.21 Aligned_cols=367 Identities=9% Similarity=-0.040 Sum_probs=195.1
Q ss_pred CCCEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEEeCCCCce
Q psy6522 204 LSAVFCVLFDKLGEVIV-TGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTV--DKTIRIWNLQTLAP 280 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~La-TGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~--DGtIrVWDl~tg~~ 280 (1407)
......|++++.+..|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...++.....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 35688999999655555 4455789999998655433333344556789999997666655553 35677777764333
Q ss_pred EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCce
Q psy6522 281 ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLF 360 (1407)
Q Consensus 281 v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~ 360 (1407)
...+...-.....|++.++. +.++++-...+.|..+++....... .. . ........+++..+ .+
T Consensus 163 ~~l~~~~~~~P~Glald~~~---~~LY~aD~~~~~I~~~~~dG~~~~~-~~-~----------~~~~~P~gi~~~~~-~l 226 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEE---QKLYWADAKLNFIHKSNLDGTNRQA-VV-K----------GSLPHPFALTLFED-IL 226 (619)
T ss_dssp EEEECSSCSSEEEEEEETTT---TEEEEEETTTCCEEEESSSCCEEC---------------------CCCEEESSS-EE
T ss_pred EEEEeCCCCCCcEEEEEccC---CEEEEEeCCCCeEEEecCCCCccEE-EE-e----------CCCCCceEEEEeCC-EE
Confidence 33333334467899999854 2455555566778888776532111 10 0 00012234556544 33
Q ss_pred EEEeeCCceEEEEeccCCCCC----------ceeEEEeec------------CCCcceEEE-----------cCCCC---
Q psy6522 361 LATGSGDHHVRVYKMDGVDSP----------LGILEVEEH------------SDKVDSIQW-----------SHSHL--- 404 (1407)
Q Consensus 361 Lasgs~DG~I~IwDl~~~~~~----------~~i~~l~~h------------~~~V~sIaf-----------Spdg~--- 404 (1407)
+++-...+.|...|..+.... ..+..+... .+....+++ +|.|-
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 444444566666665322111 111111000 001111222 11111
Q ss_pred ------------EEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 405 ------------RFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 405 ------------~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
+|+.+ ..+.|+..++...... ........-..+..++|++.+..|+.+....+
T Consensus 307 ~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~--------------~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 307 ENGKTCKDGATELLLLA-RRTDLRRISLDTPDFT--------------DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp TTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCC--------------CEECCCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred ccCcccCCCCceEEEEE-cccceEEEecCCCccc--------------eeEEeccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 11111 1122333232221100 00001112234678999998778887776588
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC
Q psy6522 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 473 ~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp 552 (1407)
.|+.+++........+...-.....|++.+..++++++-+..+.|.+.++... . ...+. ...-....++++.|
T Consensus 372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~--~-~~~l~----~~~l~~P~~iavdp 444 (619)
T 3s94_A 372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT--M-RKILI----SEDLEEPRAIVLDP 444 (619)
T ss_dssp EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC--S-CEEEE----CTTCCSEEEEEEET
T ss_pred eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC--e-EEEEE----ECCCCCeeeEEEEc
Confidence 99999987654444444344567788988745556666667789999998754 2 12221 12345688999999
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCcccc------ccCCceEecCCCcEEE-ecCC-CeeeEeeCCC
Q psy6522 553 DGTTCALTDS--YGHLLVYGLGGFKRPQ------NIPRELFFHTDYRTLN-RPNG-LFEPTYDEVT 608 (1407)
Q Consensus 553 DG~~LAsgs~--DG~I~Iwdl~sg~~~~------~lp~~v~Fs~D~~~Lv-~~~~-~~~~v~Dv~T 608 (1407)
....|..++. .+.|...+++...... ..|..+++.++...|. .+.. ..+..+|...
T Consensus 445 ~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 445 MVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred CCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 7666666653 3577777776543211 1234666776554443 3332 3344555543
No 272
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.85 E-value=0.0014 Score=72.65 Aligned_cols=192 Identities=11% Similarity=-0.008 Sum_probs=121.4
Q ss_pred ecCC--CcceEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEE
Q psy6522 389 EHSD--KVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWV 464 (1407)
Q Consensus 389 ~h~~--~V~sIafSpdg~~LaSgs~DG--tI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~L 464 (1407)
.|.. ....+.|+. +.++.+++.+| .|+.+|+.+++...... .. ....--.+++ .+..|
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~--------------~~~fgeGi~~--~~~~l 77 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VP--------------PPYFGAGIVA--WRDRL 77 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CC--------------TTCCEEEEEE--ETTEE
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CC--------------CCcceeEEEE--eCCEE
Confidence 4543 355888986 55556666654 89999999998655321 00 0000111232 35677
Q ss_pred EEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCc
Q psy6522 465 ITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGA 544 (1407)
Q Consensus 465 asgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~ 544 (1407)
+.....++.+.+||..+.+.+.++..... =+.++ + ++..|+.+..++.|.++|..+. +.+..+.....+.....
T Consensus 78 y~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~--~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 78 IQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALT--S-DDSHLYMSDGTAVIRKLDPDTL--QQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEE--E-CSSCEEEECSSSEEEEECTTTC--CEEEEEECEETTEECCC
T ss_pred EEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEe--e-CCCEEEEECCCCeEEEEeCCCC--eEEEEEEEccCCccccc
Confidence 77776699999999999999999885432 24554 4 5555555556889999999988 66666653222222345
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC-------------------CceEecCCCcEEEecCCCeeeEee
Q psy6522 545 LFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP-------------------RELFFHTDYRTLNRPNGLFEPTYD 605 (1407)
Q Consensus 545 I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp-------------------~~v~Fs~D~~~Lv~~~~~~~~v~D 605 (1407)
++.+.|. +|..+|..-.+..|.+.|..+|+.+..+. +.+++.++...|......|-.+|.
T Consensus 152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~ 230 (243)
T 3mbr_X 152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYE 230 (243)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEE
Confidence 5667765 67666555567899999999988754433 246666666655544444433443
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0066 Score=73.40 Aligned_cols=258 Identities=8% Similarity=-0.040 Sum_probs=139.6
Q ss_pred CCEEEEEEcCC--CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECC---Ce-EEEEeCCCC
Q psy6522 205 SAVFCVLFDKL--GEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD---KT-IRIWNLQTL 278 (1407)
Q Consensus 205 ~~V~~vafSpd--G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D---Gt-IrVWDl~tg 278 (1407)
....+|+|+|+ +..|+.+...+.|+.+|..++..... ........+|+|+++|+++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 44678999984 44555554448899999987766544 4455668999999999955554321 12 333333221
Q ss_pred ce-EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC
Q psy6522 279 AP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG 357 (1407)
Q Consensus 279 ~~-v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd 357 (1407)
.. ...+. .......+++.|.. +.++++-..++.|..++..++.......... .......++|+|+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~---G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----------~~~~~~~ia~dpd 283 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQN---GKIYYTRYHHAMISSYDPATGTLTEEEVMMD----------TKGSNFHIVWHPT 283 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTT---CCEEECBTTCSEEEEECTTTCCEEEEEEECS----------CCSSCEEEEECTT
T ss_pred eecccccc-ccCCCCEEEEeCCC---CeEEEEECCCCEEEEEECCCCeEEEEEeccC----------CCCCcccEEEeCC
Confidence 11 11221 22334667788732 2555555567788888876543211111110 0122346999999
Q ss_pred CceEEE-eeCCceEEEEeccCCCC-CceeEEEeec---------------CCCcceEEE---------cCCCCEEEEEeC
Q psy6522 358 GLFLAT-GSGDHHVRVYKMDGVDS-PLGILEVEEH---------------SDKVDSIQW---------SHSHLRFVSGSR 411 (1407)
Q Consensus 358 g~~Las-gs~DG~I~IwDl~~~~~-~~~i~~l~~h---------------~~~V~sIaf---------Spdg~~LaSgs~ 411 (1407)
++.|++ -...+.|..++++.... ......+.+. -.....|++ ..++.++++-..
T Consensus 284 G~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~ 363 (433)
T 4hw6_A 284 GDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD 363 (433)
T ss_dssp SSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC
Confidence 985544 45578899988743211 1111112111 122456888 677777777667
Q ss_pred CCeEEEEEccCCceEEeeeccCc-CCCCCccc-cccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 412 DGTALIWYYKCSQWRFIRLDMNT-CLPHTKET-SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 412 DGtI~IWDl~t~~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
.+.|+.++. .+....+. .... .......- ......-.....|++++.+..|+++...++.|+.+++
T Consensus 364 n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 364 SHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp TTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 788988875 44332221 1100 00000000 0001123346789999554555556554788888775
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.83 E-value=0.028 Score=65.02 Aligned_cols=275 Identities=10% Similarity=0.036 Sum_probs=149.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEe----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q psy6522 203 HLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLR----GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 203 H~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~----gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg 278 (1407)
-...+.+|.|.+++..+++| ..|.| +...+.|+.=..+. .....+.+|.|++ +..+++ +..+.|.. ....|
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGG 108 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTT
T ss_pred CCCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCC
Confidence 34579999998888777754 56765 44444443222221 1245689999986 444444 45665443 33334
Q ss_pred ceEEEEe---ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc-ccccceeeeccccccccccCCCCcceEEEEE
Q psy6522 279 APISVLV---GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL-DIDISKTVFHEPVMFNERIRPGNAHILCSSF 354 (1407)
Q Consensus 279 ~~v~~l~---~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t-~~~~~~~~~~~~~~~~~~~~~h~~~I~~vaf 354 (1407)
+.-..+. .+.+.+..|.+.+++ ..++++ .+|.| |.... +..-.... .+....+..+++
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~----~~~~~~-~~g~v--~~S~DgG~tW~~~~-----------~~~~~~~~~~~~ 170 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNG----SAEMIT-NVGAI--YRTKDSGKNWQALV-----------QEAIGVMRNLNR 170 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETT----EEEEEE-TTCCE--EEESSTTSSEEEEE-----------CSCCCCEEEEEE
T ss_pred CCceECccccCCCCCeEEEEEECCC----CEEEEe-CCccE--EEEcCCCCCCEEee-----------cCCCcceEEEEE
Confidence 4323222 233557778776543 455544 45543 32222 21111111 112346788999
Q ss_pred CCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCc-eEEeeeccC
Q psy6522 355 SPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQ-WRFIRLDMN 433 (1407)
Q Consensus 355 Spdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~-~~~~~l~~~ 433 (1407)
.+++.+++++...+..+-.|- .......+. ......+..+.+.+++.++ .++.+|.+++.+...++ |....
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~---- 242 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEP-GQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELL---- 242 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECT-TCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCB----
T ss_pred cCCCcEEEEECCCcEEEEeCC-CCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEecc----
Confidence 999888877654433333332 122222221 2345567889999988755 45567887776422122 11100
Q ss_pred cCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec---CCCCeEEEEEecCCCCEEEE
Q psy6522 434 TCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG---HTNEVFVLESHPFDSRVLLS 510 (1407)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g---H~~~V~sLafsP~dg~~LaS 510 (1407)
.........+..+++.+++..++++. +|.| ++....|+.-..+.. +...++++.|.+ + ..+++
T Consensus 243 ---------~~~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~ 308 (327)
T 2xbg_A 243 ---------SPLRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFI 308 (327)
T ss_dssp ---------CTTSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEE
T ss_pred ---------CCcccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEE
Confidence 00001223578889988777665543 6766 444455554444442 345678888875 3 45777
Q ss_pred EeCCCcEEEEEC
Q psy6522 511 AGHDGLIIIWDI 522 (1407)
Q Consensus 511 gs~DG~V~IWDi 522 (1407)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 788998877653
No 275
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.79 E-value=0.0023 Score=70.93 Aligned_cols=198 Identities=11% Similarity=0.021 Sum_probs=119.4
Q ss_pred ceeEEEEEcCCCC--CEEEEEEcCCCCEEEEEECC--CeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEE-EEECC
Q psy6522 193 NLRQHYVNLGHLS--AVFCVLFDKLGEVIVTGADD--LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVD 267 (1407)
Q Consensus 193 ~~~~~~~L~GH~~--~V~~vafSpdG~~LaTGS~D--G~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLa-Sgs~D 267 (1407)
.++++..+ .|.. -...+.|+. +.+..+.+.+ ..|+++|+.+++.+..+..... .....+..++..|. ..-.+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeC
Confidence 34555555 4543 456899986 5555565554 4899999999999998864332 22222222344444 44468
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
+.+.+||..+.+.+.++...... ..++ +++ ..|+.+..++.|.++|..+.+............ + -.
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg----~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~------~-~~ 150 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDD----SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR------P-LD 150 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCC-CEEE--ECS----SCEEEECSSSEEEEECTTTCCEEEEEECEETTE------E-CC
T ss_pred CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCC----CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc------c-cc
Confidence 99999999999999988753322 4454 333 555556668899999988875544433221000 0 02
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe--e-----------cCCCcceEEEcCCCCEEEEEeC
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE--E-----------HSDKVDSIQWSHSHLRFVSGSR 411 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~--~-----------h~~~V~sIafSpdg~~LaSgs~ 411 (1407)
.++-+.+. +|..++..-.+..|.+.|..+. ..+..+. + ...-.+.|+++|++..|++.+.
T Consensus 151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 151 NLNELEWV-NGELLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred cceeeEEe-CCEEEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 34445554 5665555545678888887432 2222222 1 1124578999998877666654
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.79 E-value=0.011 Score=70.21 Aligned_cols=238 Identities=13% Similarity=-0.054 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccc
Q psy6522 249 ISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDIS 328 (1407)
Q Consensus 249 ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~ 328 (1407)
-+|.+..+.. +|+.+ ....|+..++........+.. ...+..++|.+.. +.++++-...+.|..+++.......
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~---~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRR---ELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTT---TEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCC---CeEEEEeCCCCcEEEEecCCCCcEE
Confidence 3455555533 44433 346788888876655444443 3457899999743 2555555567788888876542111
Q ss_pred eeeeccccccccccCCCCcceEEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEE
Q psy6522 329 KTVFHEPVMFNERIRPGNAHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFV 407 (1407)
Q Consensus 329 ~~~~~~~~~~~~~~~~h~~~I~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~La 407 (1407)
.. . ........+++.+.+ .++++-...+.|.++++++.. . ...+.........|+++|.+..|+
T Consensus 153 -~~-~----------~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~-~~l~~~~l~~P~giavdp~~g~ly 217 (386)
T 3v65_B 153 -VV-S----------TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--R-KVLLWQSLEKPRAIALHPMEGTIY 217 (386)
T ss_dssp -EE-C----------SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--C-EEEECSSCSCEEEEEEETTTTEEE
T ss_pred -EE-e----------CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--e-EEeecCCCCCCcEEEEEcCCCeEE
Confidence 11 0 111234567888754 445555567788888885322 1 111222334568899998776665
Q ss_pred EEe-CC-CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceE
Q psy6522 408 SGS-RD-GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLV 485 (1407)
Q Consensus 408 Sgs-~D-GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l 485 (1407)
... .. +.|..+++.......+. .........|+|++++..|+.+....+.|..+|+......
T Consensus 218 ~td~~~~~~I~r~~~dG~~~~~~~----------------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 218 WTDWGNTPRIEASSMDGSGRRIIA----------------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEE----------------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred EeccCCCCEEEEEeCCCCCcEEEE----------------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE
Confidence 554 33 56777776543322111 0112346789999988888888776789999998654444
Q ss_pred EEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 486 ~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..+.........|++. .+.++++-...+.|..++..++
T Consensus 282 ~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 282 AVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCC
Confidence 4444444566778873 4566777777788888886666
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.78 E-value=0.0017 Score=84.07 Aligned_cols=197 Identities=14% Similarity=0.057 Sum_probs=107.1
Q ss_pred ceEEEEec-cCCCCCceEEEEEe-cCC----ceeEEeeccc-cccceeeeccccccccccCCCCcceEEEEECCCCceEE
Q psy6522 290 IITGVNFC-PLEVNGFNYLASTS-TDG----CIGFWKYKLD-IDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 362 (1407)
Q Consensus 290 ~VtsLafs-pd~~~~~~~LaSgs-~DG----tI~vWDl~t~-~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~La 362 (1407)
.+...+|+ |++ ++|+.+. .+| .|.++|+.++ ..+.... . .....++|+|||+.|+
T Consensus 175 ~~~~~~~S~PDG----~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-------~-------~~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPEH----DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-------S-------GTNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTTT----CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-------E-------EECSCCEECSSTTEEE
T ss_pred EEeeeEecCCCC----CEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-------c-------CceeeEEEecCCCEEE
Confidence 56788999 976 6666544 333 4889998876 4211100 0 1124578999998887
Q ss_pred EeeCC-----ceEEEEeccCCCCCceeEEEe-ecCCCcceEEEcCCCCEEEEEeC---CCeEEEEEccCCc--e--EEee
Q psy6522 363 TGSGD-----HHVRVYKMDGVDSPLGILEVE-EHSDKVDSIQWSHSHLRFVSGSR---DGTALIWYYKCSQ--W--RFIR 429 (1407)
Q Consensus 363 sgs~D-----G~I~IwDl~~~~~~~~i~~l~-~h~~~V~sIafSpdg~~LaSgs~---DGtI~IWDl~t~~--~--~~~~ 429 (1407)
....+ ..|.++++.+.. ......+. ........+.|+|+|++|+..+. ...|.++|+.++. . ..+
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l- 314 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQ-SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV- 314 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCG-GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-
T ss_pred EEEECCCCCCCEEEEEECCCCc-hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-
Confidence 77654 357778874322 11122222 22344567899999998876653 3357777776542 1 110
Q ss_pred eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC----CeEEEEECCCCceEEE-EecCCCCeEEEEEecCC
Q psy6522 430 LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN----FQIKIWDAFNGDLVQV-LKGHTNEVFVLESHPFD 504 (1407)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D----G~I~IWDl~tg~~l~~-l~gH~~~V~sLafsP~d 504 (1407)
..........+.|+. |..|+..+..+ ..|.++++.++..... +..|...+.--.+.+..
T Consensus 315 ---------------~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~ 378 (751)
T 2xe4_A 315 ---------------RPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS 378 (751)
T ss_dssp ---------------SCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS
T ss_pred ---------------ecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC
Confidence 001122334444443 55555554423 3788888765322222 33344433222344424
Q ss_pred CCEEEEEeCCCc--EEEEEC
Q psy6522 505 SRVLLSAGHDGL--IIIWDI 522 (1407)
Q Consensus 505 g~~LaSgs~DG~--V~IWDi 522 (1407)
+.++++...+|. |.++++
T Consensus 379 ~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 379 NYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp SEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEEEeCCEEEEEEEec
Confidence 556677777886 455564
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.78 E-value=0.015 Score=65.07 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=133.9
Q ss_pred EEeCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCCceEEEEec-cCCceEEEEeccCCCCCceEEEEEecCCceeE
Q psy6522 241 TLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGF 318 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lL-aSgs~DGtIrVWDl~tg~~v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~v 318 (1407)
.+.+-...+..|+|+|++..| ++...++.|...|+. ++.+..+.- -......|++.+++ .++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g----~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN----QFVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT----EEEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC----EEEEEECCCCcEEE
Confidence 455666789999999986655 456778899999998 887777642 23567889998754 66666667788889
Q ss_pred EeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEe-------ecC
Q psy6522 319 WKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVE-------EHS 391 (1407)
Q Consensus 319 WDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~-------~h~ 391 (1407)
+++.....+...... .+.......+.....++|+|.+..|.++.......||.+++......+..+. .+.
T Consensus 96 ~~v~~~~~i~~~~~~---~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKI---KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEE---ECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeee---ccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 888765431111110 0000112345668999999998777777666556666664211111111111 123
Q ss_pred CCcceEEEcCCCCE-EEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec
Q psy6522 392 DKVDSIQWSHSHLR-FVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF 470 (1407)
Q Consensus 392 ~~V~sIafSpdg~~-LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~ 470 (1407)
..+.+++++|.... ++.......|.++|..........+ .... .........--.|+|+++|+ |++++.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L--~~g~------~~l~~~~~qpEGia~d~~G~-lyIvsE- 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSL--TKGS------RGLSHNIKQAEGVAMDASGN-IYIVSE- 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEEC--STTG------GGCSSCCCSEEEEEECTTCC-EEEEET-
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEc--CCcc------CCcccccCCCCeeEECCCCC-EEEEcC-
Confidence 45789999997664 4555566788888877542222221 1100 00011223456799999997 555565
Q ss_pred CCeEEEEEC
Q psy6522 471 NFQIKIWDA 479 (1407)
Q Consensus 471 DG~I~IWDl 479 (1407)
.+.++++.-
T Consensus 243 ~n~~y~f~~ 251 (255)
T 3qqz_A 243 PNRFYRFTP 251 (255)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEe
Confidence 556776653
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.76 E-value=0.0085 Score=71.17 Aligned_cols=254 Identities=10% Similarity=-0.014 Sum_probs=148.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCCceEEEEe
Q psy6522 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTLAPISVLV 285 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lL-aSgs~DGtIrVWDl~tg~~v~~l~ 285 (1407)
-.|.+..+.+ +|+.+. ...|+.+++........+. ....+..|+|++.+..| ++-...+.|..+++........+.
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3466666644 444433 4568888887766554444 34568899999765555 444567889999998665444443
Q ss_pred ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee
Q psy6522 286 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 365 (1407)
Q Consensus 286 ~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs 365 (1407)
........|++.+.. +.++++-...+.|.+.++..... .... .........+++.|.+..|+...
T Consensus 156 ~~~~~p~glavd~~~---g~lY~~d~~~~~I~~~~~dg~~~--~~l~----------~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 156 TGLESPGGLAVDWVH---DKLYWTDSGTSRIEVANLDGAHR--KVLL----------WQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp SSCSCCCCEEEETTT---TEEEEEETTTTEEEECBTTSCSC--EEEE----------CSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEEeCC---CeEEEEcCCCCeEEEEeCCCCce--EEee----------cCCCCCCcEEEEEcCCCeEEEec
Confidence 333345678887643 35556666677788877764321 1111 11124568899998666555543
Q ss_pred -CC-ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCccc
Q psy6522 366 -GD-HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKET 442 (1407)
Q Consensus 366 -~D-G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~ 442 (1407)
.. +.|..+++++... .. .....-.....|+|++++..|+.+ +..+.|..+++.......+..
T Consensus 221 ~~~~~~I~r~~~dG~~~--~~-~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------ 285 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGR--RI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------ 285 (386)
T ss_dssp CSSSCEEEEEETTSCSC--EE-EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------
T ss_pred cCCCCEEEEEeCCCCCc--EE-EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------
Confidence 34 6788888743221 11 112223346789999876666554 456778888876533221110
Q ss_pred cccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEE
Q psy6522 443 SDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLE 499 (1407)
Q Consensus 443 ~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLa 499 (1407)
........+++ ++..|+.+....+.|..++..+|+.+..+.........|+
T Consensus 286 ----~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 336 (386)
T 3v65_B 286 ----QGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336 (386)
T ss_dssp ----SSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred ----CCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEE
Confidence 01123455666 3345665555578899998777777666654333333443
No 280
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.76 E-value=0.067 Score=72.26 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCCeEEEEEcCC------CCEEEEEEC-CCeEEEEeCC
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGCSGEISDIAIDNR------NILLAAGTV-DKTIRIWNLQ 276 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-~gH~~~ItsLafSpD------g~lLaSgs~-DGtIrVWDl~ 276 (1407)
..|.+++.+. .+|+.++ ++.|.++.+.++++.... ..-...|.|+++.+. +.++|.|.+ |++|+|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 4566666553 4666665 678888888766433211 123568999999763 469999997 9999999999
Q ss_pred CCceEEEEec-cCCceEEEEeccCCCCCceEEEEEecCCceeEEeecc
Q psy6522 277 TLAPISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKL 323 (1407)
Q Consensus 277 tg~~v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t 323 (1407)
+.+.+....- ......++.+.... +..+|..|-.||.+..+.++.
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~--~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFE--SSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEET--TEEEEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeC--CCcEEEEEeCCCeEEEEEEcC
Confidence 8776654332 12234555544321 347899999999987776653
No 281
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.74 E-value=0.0015 Score=73.32 Aligned_cols=183 Identities=9% Similarity=-0.034 Sum_probs=116.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEE--EEEcCCCCEEEEEECCCeEEEEeCCCCceEEEE
Q psy6522 207 VFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISD--IAIDNRNILLAAGTVDKTIRIWNLQTLAPISVL 284 (1407)
Q Consensus 207 V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~Its--LafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l 284 (1407)
...+.|+ ++.+.++.+.+|.|+++|+.+++.+..+ -...... +++..+ ++.++.-.++.+.+||..+++.+.++
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence 4688887 3566677778889999999999998887 2233333 555432 34444456889999999999999988
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEe
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATG 364 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasg 364 (1407)
..... -..++ +++ ..|+.+..++.|.++|..+.+............ .-..++.+.|. +|.+.+..
T Consensus 133 ~~~~e-GwGLt--~Dg----~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~-------~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 133 RYSGE-GWGLC--YWN----GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQ-------PVELINELECA-NGVIYANI 197 (268)
T ss_dssp ECSSC-CCCEE--EET----TEEEEECSSSEEEEECTTTCCEEEEEECEETTE-------ECCCEEEEEEE-TTEEEEEE
T ss_pred eCCCc-eeEEe--cCC----CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCc-------ccccccccEEe-CCEEEEEE
Confidence 75322 24444 333 566666678899999988875544433221000 01234556666 67666555
Q ss_pred eCCceEEEEeccCCCCCceeEEEee-------------cCCCcceEEEcCCCCEEEEEeC
Q psy6522 365 SGDHHVRVYKMDGVDSPLGILEVEE-------------HSDKVDSIQWSHSHLRFVSGSR 411 (1407)
Q Consensus 365 s~DG~I~IwDl~~~~~~~~i~~l~~-------------h~~~V~sIafSpdg~~LaSgs~ 411 (1407)
..+..|.+.|..+. ..+..+.- ...-.+.|+|+|++..|++.+.
T Consensus 198 w~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 198 WHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 56778999988432 22222221 1134578999998775555443
No 282
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.71 E-value=0.25 Score=62.45 Aligned_cols=375 Identities=11% Similarity=-0.020 Sum_probs=203.8
Q ss_pred CCCEEEEEEcCCCCEEEEE-ECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCE-EEEEECCCeEEEEeCCCCceE
Q psy6522 204 LSAVFCVLFDKLGEVIVTG-ADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNIL-LAAGTVDKTIRIWNLQTLAPI 281 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTG-S~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~l-LaSgs~DGtIrVWDl~tg~~v 281 (1407)
...+..|+|++.+..|+.+ ..++.|..+++........+.........|++.+.+.. .++-...+.|.+.++......
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 4568899999976666655 45788999998765544444433356788999876554 455555688999998754433
Q ss_pred EEEeccCCceEEEEeccCCCCCceEEEEEec--CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCc
Q psy6522 282 SVLVGHQGIITGVNFCPLEVNGFNYLASTST--DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGL 359 (1407)
Q Consensus 282 ~~l~~H~~~VtsLafspd~~~~~~~LaSgs~--DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~ 359 (1407)
..+...-.....|++.|.. ..|+.+.. .+.|...++..... .... ..-.....+++++++.
T Consensus 116 ~l~~~~l~~P~~iavdp~~----G~lY~tD~g~~~~I~r~~~dG~~~--~~l~-----------~~~~~P~GlalD~~~~ 178 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAE----GFMYWTEWGGKPKIDRAAMDGSER--TTLV-----------PNVGRANGLTIDYAKR 178 (628)
T ss_dssp EEECSSCCCEEEEEEETTT----TEEEEEECSSSCEEEEEETTSCSC--EEEE-----------CSCSSEEEEEEETTTT
T ss_pred EEEeCCCCCcccEEEccCC----CeEEEeCCCCCCEEEEEeCCCCce--EEEE-----------CCCCCcceEEEccccC
Confidence 3333344556899999853 34444442 45566666544321 1111 1124568899999766
Q ss_pred eEEEe-eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeec-------
Q psy6522 360 FLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLD------- 431 (1407)
Q Consensus 360 ~Lasg-s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~------- 431 (1407)
.|+.+ ...+.|..+++++... .+ +.........|++.. +.++++-...+.|...|..+++.......
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~--~v--~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~ 253 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNR--EV--IADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMD 253 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSC--EE--EEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCE
T ss_pred EEEEEECCCCEEEEEcCCCCce--EE--eeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcce
Confidence 66655 4567899999854332 22 222333455777764 34444444567777777544431111000
Q ss_pred -----------cCcCC-----------------------CCCcc-------------------------cc---------
Q psy6522 432 -----------MNTCL-----------------------PHTKE-------------------------TS--------- 443 (1407)
Q Consensus 432 -----------~~~~~-----------------------~~~~~-------------------------~~--------- 443 (1407)
.+.+. .+... ..
T Consensus 254 i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~ 333 (628)
T 4a0p_A 254 ILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDII 333 (628)
T ss_dssp EEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEE
T ss_pred eeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEE
Confidence 00000 00000 00
Q ss_pred ccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec------CCCCeEEEEEecCCCCEEEEEeCCCcE
Q psy6522 444 DETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG------HTNEVFVLESHPFDSRVLLSAGHDGLI 517 (1407)
Q Consensus 444 ~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g------H~~~V~sLafsP~dg~~LaSgs~DG~V 517 (1407)
.....-..+..++|++.+..|+.+....+.|+.++.........+.. ....+..|++.+..+++.++-+..+.|
T Consensus 334 l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I 413 (628)
T 4a0p_A 334 LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413 (628)
T ss_dssp CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEE
Confidence 00001123445666665555655554456666666543332223322 233578899888334556676678899
Q ss_pred EEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC-C--eEEEEEcCCCcccc------ccCCceEecC
Q psy6522 518 IIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY-G--HLLVYGLGGFKRPQ------NIPRELFFHT 588 (1407)
Q Consensus 518 ~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D-G--~I~Iwdl~sg~~~~------~lp~~v~Fs~ 588 (1407)
.+.++... ....+. . .......++++.|...+|..++.. . .|...+++...... ..|..+.+.+
T Consensus 414 ~v~~~~G~---~~~~l~---~-~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 414 NVTRLDGR---SVGVVL---K-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp EEEETTSC---EEEEEE---E-CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred EEEECCCC---eEEEEE---e-CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 99998643 222221 1 234568899999955555544432 2 57777776443311 1234566666
Q ss_pred CCcEEE-ecC-CCeeeEeeCC
Q psy6522 589 DYRTLN-RPN-GLFEPTYDEV 607 (1407)
Q Consensus 589 D~~~Lv-~~~-~~~~~v~Dv~ 607 (1407)
+...|. .+. ...+..+|..
T Consensus 487 ~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 487 RLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEeCCCCEEEEEeCC
Confidence 554443 333 2334455553
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.71 E-value=0.038 Score=63.55 Aligned_cols=230 Identities=11% Similarity=-0.024 Sum_probs=135.7
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEE-EEECCCeEEEEeCCC----CceEEEEeccCCceEEEEeccC
Q psy6522 225 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLA-AGTVDKTIRIWNLQT----LAPISVLVGHQGIITGVNFCPL 299 (1407)
Q Consensus 225 DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLa-Sgs~DGtIrVWDl~t----g~~v~~l~~H~~~VtsLafspd 299 (1407)
...|+..|+.+......+. .-..+..++|++++..|+ +-...+.|..+++.+ ......+...-.....|++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3468899998877665554 345678999998765554 444568999999876 2222233222234578888763
Q ss_pred CCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC-C-ceEEEEeccC
Q psy6522 300 EVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-D-HHVRVYKMDG 377 (1407)
Q Consensus 300 ~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-D-G~I~IwDl~~ 377 (1407)
+ +.++++-...+.|.++++..... .... . ........+++.|.+..|+.+.. . +.|..+++++
T Consensus 88 ~---~~ly~~d~~~~~I~~~~~~g~~~-~~~~-~----------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 88 H---SNIYWTDSVLGTVSVADTKGVKR-KTLF-R----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp T---TEEEEEETTTTEEEEEETTSSSE-EEEE-E----------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred C---CeEEEEECCCCEEEEEeCCCCce-EEEE-E----------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 3 25556656778898888764311 1111 1 11245688999986655554443 3 6788888743
Q ss_pred CCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEE
Q psy6522 378 VDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVA 456 (1407)
Q Consensus 378 ~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtsla 456 (1407)
.. .... ....-.....|++++++..|+.+. ..+.|..+|+.......+.. . .........++
T Consensus 153 ~~--~~~~-~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-~-------------~~~~~~P~gia 215 (316)
T 1ijq_A 153 VD--IYSL-VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-D-------------EKRLAHPFSLA 215 (316)
T ss_dssp CC--EEEE-ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-C-------------TTTTSSEEEEE
T ss_pred CC--eEEE-EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-c-------------CCccCCcEEEE
Confidence 22 1111 112234567899998877666554 56789999987543222110 0 00112334566
Q ss_pred ECCCCCEEEEEEecCCeEEEEECCCCceEEEEe
Q psy6522 457 WDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 489 (1407)
Q Consensus 457 fSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~ 489 (1407)
+. +..|+.+....+.|..++..+++.+..+.
T Consensus 216 v~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EE--CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 63 35566665557899999987877666554
No 284
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.69 E-value=0.023 Score=65.43 Aligned_cols=211 Identities=9% Similarity=-0.080 Sum_probs=125.4
Q ss_pred cceEEEEECCCCceE-EEeeCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCCCEE-EEEeCCCeEEEEEccCC
Q psy6522 347 AHILCSSFSPGGLFL-ATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 347 ~~I~~vafSpdg~~L-asgs~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg~~L-aSgs~DGtI~IWDl~t~ 423 (1407)
..+..++|++.+..| ++-...+.|..+++.+... ......+.........|++++.+..| ++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 557889999865544 4555568899999854110 01111122222456789998755544 55566788999988754
Q ss_pred ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEE-ecCCCCeEEEEEe
Q psy6522 424 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVL-KGHTNEVFVLESH 501 (1407)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D-G~I~IWDl~tg~~l~~l-~gH~~~V~sLafs 501 (1407)
....... ........++++|.+..|+.+.... +.|..+++. |.....+ ...-.....|+++
T Consensus 110 ~~~~~~~----------------~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d 172 (316)
T 1ijq_A 110 KRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLD 172 (316)
T ss_dssp SEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEE
T ss_pred ceEEEEE----------------CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEe
Confidence 3222110 0123457899999888777776533 689998875 4444433 2334567899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 502 PFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 502 P~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
+..+.++++-+..+.|..+|+.... ...+.. ..........+++. .+.++++-...+.|..++..+|+.+..+
T Consensus 173 ~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~--~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 173 LLSGRLYWVDSKLHSISSIDVNGGN---RKTILE--DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCS---CEEEEE--CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred ccCCEEEEEECCCCeEEEEecCCCc---eEEEee--cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 8334444555566799999997542 222221 01122346677774 3444444456678999998777765544
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.65 E-value=0.085 Score=71.27 Aligned_cols=146 Identities=10% Similarity=0.120 Sum_probs=88.5
Q ss_pred CCEEEEEe----------CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC
Q psy6522 403 HLRFVSGS----------RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF 472 (1407)
Q Consensus 403 g~~LaSgs----------~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG 472 (1407)
..+|++|+ ..|.|.+|++..+++..+.. ....+.+++++-- +| +|+++. ..
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~---------------~~v~g~v~al~~~-~g-~Lla~i--g~ 904 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE---------------KEVKGAVYSMVEF-NG-KLLASI--NS 904 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE---------------EEESSCEEEEEEE-TT-EEEEEE--TT
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE---------------EEcCCcCEEEeee-CC-EEEEEc--CC
Confidence 35888876 34789999887544333211 1235567777633 34 555555 57
Q ss_pred eEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECC
Q psy6522 473 QIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 473 ~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSp 552 (1407)
.|++|++...+.+..-..+-..|..+.... .+++++.|..-..|.++...... ..+..+ ........++++.|-.
T Consensus 905 ~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~-~~L~~~---a~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 905 TVRLYEWTTEKELRTECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPME-GNFEEI---ARDFNPNWMSAVEILD 979 (1158)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTT-TEEEEE---EECCSCBCEEEEEEEE
T ss_pred EEEEEECCCCceEEEEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCC-CeEEEE---EeecccccEEEEEEEc
Confidence 999999987654442111222233333333 46788888887777776543321 222222 2333456788888875
Q ss_pred CCCEEEEEeCCCeEEEEEcCC
Q psy6522 553 DGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 553 DG~~LAsgs~DG~I~Iwdl~s 573 (1407)
+ ..++.++.+|.|.++....
T Consensus 980 ~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 980 D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp T-TEEEEEETTSEEEEEEECT
T ss_pred c-CcEEEEcCCCcEEEEecCC
Confidence 5 4778899999999998765
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.015 Score=70.04 Aligned_cols=253 Identities=9% Similarity=-0.049 Sum_probs=133.9
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEec-CCc----eeEEee
Q psy6522 248 EISDIAIDN-RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DGC----IGFWKY 321 (1407)
Q Consensus 248 ~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~-DGt----I~vWDl 321 (1407)
....|+|+| ++..|+.+...+.|+++|+.++...... ........|+|.+++ ++|+++.. ++. +.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G----~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEA----DSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTS----SEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCC----CEEEEEeCCCCcccceEEEEeC
Confidence 457899998 4555666555588999999876544433 344567899999976 64555543 322 222332
Q ss_pred ccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEc
Q psy6522 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 322 ~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafS 400 (1407)
.+........ . .......++++| +|.++++-..++.|..|+..+.. ...+... ........|+|+
T Consensus 213 -~g~~~~~~~l------~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~-~~~~~P~gia~~ 278 (430)
T 3tc9_A 213 -ESGFKVITEL------T-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTI-QDSGWEFHIQFH 278 (430)
T ss_dssp -GGTSCSEEEE------E-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEEC-SSSSCCEEEEEC
T ss_pred -CCceeeeeee------c-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEc-CCCCcceeEEEc
Confidence 2211100000 0 013356788999 67766666677889999984221 1111111 112346789999
Q ss_pred CCCCEE-EEEeCCCeEEEEEccCC--ce--EEeeeccCcCCCCCccccccccccccEE-EEEEC--------CCCCEEEE
Q psy6522 401 HSHLRF-VSGSRDGTALIWYYKCS--QW--RFIRLDMNTCLPHTKETSDETNKKIKVT-MVAWD--------ASDRWVIT 466 (1407)
Q Consensus 401 pdg~~L-aSgs~DGtI~IWDl~t~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~Vt-slafS--------pdg~~Las 466 (1407)
|++++| ++-...+.|..++.... .. ........ ..............-.... .++.. +++ .|++
T Consensus 279 pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyv 356 (430)
T 3tc9_A 279 PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYF 356 (430)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEE
Confidence 999954 45556788999887642 21 01111000 0000000000000111222 45553 334 4555
Q ss_pred EEecCCeEEEEECCCCceEEEEec----C-------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 467 AINFNFQIKIWDAFNGDLVQVLKG----H-------------TNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 467 gs~~DG~I~IWDl~tg~~l~~l~g----H-------------~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
+...++.|+.++ .+|........ . -.....|++.+.++.++++-...+.|+.+++
T Consensus 357 aD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 357 CDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 554478999998 45654433321 0 1146788888733455555555667776664
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.58 E-value=0.048 Score=65.00 Aligned_cols=247 Identities=11% Similarity=-0.041 Sum_probs=146.4
Q ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEeCCCC----ceEEEEeccCCceE
Q psy6522 218 VIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAG-TVDKTIRIWNLQTL----APISVLVGHQGIIT 292 (1407)
Q Consensus 218 ~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSg-s~DGtIrVWDl~tg----~~v~~l~~H~~~Vt 292 (1407)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444444 4578888887765554444 45678899999866555544 45688999998752 23333433445677
Q ss_pred EEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-C-CceE
Q psy6522 293 GVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-G-DHHV 370 (1407)
Q Consensus 293 sLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~-DG~I 370 (1407)
.|++.+.. +.++++-...+.|.+.++....... .. . ........+++.|.+.+|+... . .+.|
T Consensus 163 glavD~~~---~~lY~~d~~~~~I~~~~~~g~~~~~-l~-~----------~~~~~P~~iavdp~~g~ly~td~~~~~~I 227 (400)
T 3p5b_L 163 GLAVDWIH---SNIYWTDSVLGTVSVADTKGVKRKT-LF-R----------ENGSKPRAIVVDPVHGFMYWTDWGTPAKI 227 (400)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEECTTTCSEEE-EE-E----------CSSCCEEEEEEETTTTEEEEEECSSSCCE
T ss_pred cEEEEecC---CceEEEECCCCeEEEEeCCCCceEE-EE-e----------CCCCCcceEEEecccCeEEEEeCCCCCEE
Confidence 88887632 2566666667888888876542111 11 1 1124468899999666555544 2 4678
Q ss_pred EEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCcccccccccc
Q psy6522 371 RVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKK 449 (1407)
Q Consensus 371 ~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~ 449 (1407)
...++++... .. .....-.....|++++++..|+.+. ..+.|..+|+.......+.. .....
T Consensus 228 ~~~~~dG~~~--~~-~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--------------~~~~l 290 (400)
T 3p5b_L 228 KKGGLNGVDI--YS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE--------------DEKRL 290 (400)
T ss_dssp EEEETTSCSC--EE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE--------------CSSTT
T ss_pred EEEeCCCCcc--EE-EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe--------------CCCCC
Confidence 8888853321 11 1122234568899998877776654 56788888887544322211 00011
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEE
Q psy6522 450 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLES 500 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLaf 500 (1407)
.....+++ ++..|+.+....+.|..+|..+|+.+..+.........|.+
T Consensus 291 ~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 291 AHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 22334555 34556655554788999998888777776654444555543
No 288
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.55 E-value=0.12 Score=59.36 Aligned_cols=270 Identities=12% Similarity=0.107 Sum_probs=166.1
Q ss_pred CCeEEEEEcCCCcEEEEEe-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCC
Q psy6522 225 DLLIKLWRARDGKLLATLR-GCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNG 303 (1407)
Q Consensus 225 DG~V~IWDl~tg~~l~tl~-gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~ 303 (1407)
+..|.|.|+.++.....-. .-. +.-.+|..+.||.-. ..++.|+|+++...+..+.-. ..|.-=.|...
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~---- 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL---- 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS----
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCC----
Confidence 3478899998865443222 112 223488888888776 679999999999888877654 46666777654
Q ss_pred ceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-------CCceEEEEecc
Q psy6522 304 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMD 376 (1407)
Q Consensus 304 ~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-------~DG~I~IwDl~ 376 (1407)
+.|+..+. ..|..|++.......+.+...+ .+ ...+|..-..+++.++++..+ -.|.+.+|..+
T Consensus 118 -~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~-----~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 188 (365)
T 2xzh_A 118 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHS-----SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 188 (365)
T ss_dssp -SEEEEEES-SEEEEEESSTTCCCEEEEECCG-----GG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred -CeEEEEcC-CcEEEEcccCCCCCceeeecch-----hc--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec
Confidence 45665554 4699999876433333322211 11 137788888899999876554 24788999883
Q ss_pred CCCCCceeEEEeecCCCcceEEEcCCC---CEEEEEeC---CCeEEEEEccCCceEEeeeccCcCCCCCc--cccccccc
Q psy6522 377 GVDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSR---DGTALIWYYKCSQWRFIRLDMNTCLPHTK--ETSDETNK 448 (1407)
Q Consensus 377 ~~~~~~~i~~l~~h~~~V~sIafSpdg---~~LaSgs~---DGtI~IWDl~t~~~~~~~l~~~~~~~~~~--~~~~~~~~ 448 (1407)
. .....+.+|......+.+..+. .+|+.+.. .+.+.|-++..... -........ ........
T Consensus 189 r----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~------~~~~f~kk~vdi~fppea~ 258 (365)
T 2xzh_A 189 R----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPPEAQ 258 (365)
T ss_dssp T----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCT------TCCCCCCEEEEECCCTTCT
T ss_pred c----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCC------CCCCcccccceeeCCcccc
Confidence 2 2334566665544333322111 13333332 25788887743200 000000000 00011122
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 449 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..-..++..|+....++..+. -|.|++||+.++.++..-+-....|...+.+. ...=++.....|.|.--.+...
T Consensus 259 ~DFPVamqvs~kygviyviTK-~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 259 NDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp TCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEEEEEEECTT
T ss_pred CCceEEEEecccCCEEEEEeC-CcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEEEEEEECcc
Confidence 334456777777788888887 89999999999999998888888888777766 4445666668888877777665
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.52 E-value=0.03 Score=67.65 Aligned_cols=253 Identities=8% Similarity=-0.012 Sum_probs=132.5
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecC---C-ceeEEee
Q psy6522 248 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTD---G-CIGFWKY 321 (1407)
Q Consensus 248 ~ItsLafSpD--g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~D---G-tI~vWDl 321 (1407)
....|+|+++ +..|+.+...+.|+.+++.++..... ........+|+|.+++ .++++...+ . .+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG----~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNG----DMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTC----CEEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCC----CEEEEcCCCCcccceEEEEEC
Confidence 4678999984 34444444348999999987765544 3344567899999976 544443321 1 1222222
Q ss_pred ccccccceeeeccccccccccCCCCcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEc
Q psy6522 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 322 ~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafS 400 (1407)
... ...... . ........++++| +|.++++-..++.|+.++.........+... +....-..|+|+
T Consensus 215 ~~~-~~~~~~------~-----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~d 281 (433)
T 4hw6_A 215 ASG-FTERLS------L-----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWH 281 (433)
T ss_dssp GGT-TCCEEE------E-----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEEC
T ss_pred CCC-eecccc------c-----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEe
Confidence 111 000000 0 0113346688999 6766666667788888887422110111111 112223469999
Q ss_pred CCCCEEEE-EeCCCeEEEEEccC--CceE--EeeeccCcCCCCCccccccccccccEEEEEE---------CCCCCEEEE
Q psy6522 401 HSHLRFVS-GSRDGTALIWYYKC--SQWR--FIRLDMNTCLPHTKETSDETNKKIKVTMVAW---------DASDRWVIT 466 (1407)
Q Consensus 401 pdg~~LaS-gs~DGtI~IWDl~t--~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf---------Spdg~~Las 466 (1407)
|++.+|+. -...+.|..+++.. +... ....... .......-............+++ ..+|.+.+
T Consensus 282 pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv- 359 (433)
T 4hw6_A 282 PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF- 359 (433)
T ss_dssp TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE-
T ss_pred CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE-
Confidence 99995554 45567898887653 3211 0110000 00000000000112234567888 66665544
Q ss_pred EEecCCeEEEEECCCCceEEEEecCC------------------CCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 467 AINFNFQIKIWDAFNGDLVQVLKGHT------------------NEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 467 gs~~DG~I~IWDl~tg~~l~~l~gH~------------------~~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
+...++.|+.++. +|.. .++.+.. .....|++.|.++.++++-...+.|+.+++
T Consensus 360 aD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 360 CDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 4444889999985 5643 3333221 135678888425656555555667776664
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.51 E-value=0.035 Score=66.24 Aligned_cols=212 Identities=8% Similarity=-0.096 Sum_probs=125.8
Q ss_pred cceEEEEECCCCceEEEe-eCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCC
Q psy6522 347 AHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasg-s~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~ 423 (1407)
..+..++|++.+..|+.. ...+.|..+++.+... ......+.........|++.+.+. ++++-...+.|.+.++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 567899999865555544 4567888888854221 111112222334567899987444 4455556788888887755
Q ss_pred ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec-CCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 424 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-NFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~-DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
....+.. ........|+++|.+.+|+.+... .+.|...++........+...-.....|++++
T Consensus 192 ~~~~l~~----------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~ 255 (400)
T 3p5b_L 192 KRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 255 (400)
T ss_dssp SEEEEEE----------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred ceEEEEe----------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEe
Confidence 4332211 122346789999988888877642 36899999865444433443445678999998
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCccccccC
Q psy6522 503 FDSRVL-LSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 503 ~dg~~L-aSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~lp 581 (1407)
++..| ++-...+.|..+|+.... ...+.. ..........+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 256 -~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~--~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 256 -LSGRLYWVDSKLHSISSIDVNGGN---RKTILE--DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSCC---CEEEEE--CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred -CCCEEEEEECCCCEEEEEeCCCCc---cEEEEe--CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 55545 444556789999987542 222210 11122345677772 33344444456789999977777655443
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.49 E-value=0.061 Score=62.04 Aligned_cols=224 Identities=13% Similarity=0.001 Sum_probs=136.2
Q ss_pred CCeEEEEeCCCCc-eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCC
Q psy6522 267 DKTIRIWNLQTLA-PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPG 345 (1407)
Q Consensus 267 DGtIrVWDl~tg~-~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h 345 (1407)
...|+..++.... ....+......+..+.|.+.. +.++++-...+.|..+++........... ..
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~---~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-----------~~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH---GLIYWSDVSEEAIKRTEFNKTESVQNVVV-----------SG 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG---TEEEEEETTTTEEEEEETTSSSCCCEEEE-----------EC
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC---CEEEEEECCCCcEEEEEccCCCceEEEEc-----------CC
Confidence 4678999997653 122222222356789998743 25555555677888888765521111111 01
Q ss_pred CcceEEEEECC-CCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeC--CCeEEEEEccC
Q psy6522 346 NAHILCSSFSP-GGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTALIWYYKC 422 (1407)
Q Consensus 346 ~~~I~~vafSp-dg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~--DGtI~IWDl~t 422 (1407)
-.....+++.+ ++.++++-...+.|.++++++.. . .. .+.........|+++|.+..|+.+.. .+.|...++..
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~-~~-l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R-KV-LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C-EE-EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-E-EE-EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 13456788887 44555555667889999985322 1 11 12233445688999987666665553 46777777654
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
.....+. ...-.....|+|++++..|+.+....+.|..+|+........+.+.......+++.
T Consensus 155 ~~~~~~~----------------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~- 217 (318)
T 3sov_A 155 SSRFIII----------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF- 217 (318)
T ss_dssp CSCEEEE----------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-
T ss_pred CCeEEEE----------------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-
Confidence 3221110 01123457899999988888887768899999986444333333344556777775
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q psy6522 503 FDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 503 ~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.+.++++-...+.|..++..++
T Consensus 218 -~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 218 -EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp -TTEEEEEETTTTEEEEEETTTC
T ss_pred -CCEEEEEecCCCeEEEEECCCC
Confidence 3456666666788999998777
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.49 E-value=0.23 Score=59.01 Aligned_cols=271 Identities=12% Similarity=0.101 Sum_probs=162.4
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCc
Q psy6522 225 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 304 (1407)
Q Consensus 225 DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~ 304 (1407)
+..|.|.|+.++..+..-.-. --+.-.+|..+.||.-. ..++.|+|+++...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~----- 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-----
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-----
Confidence 347889999886544322211 11234578888777765 6799999999998888877555 4556666653
Q ss_pred eEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-------CCceEEEEeccC
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 377 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-------~DG~I~IwDl~~ 377 (1407)
+.|+..+. ..|..|++.......+.+...+ .+ ...+|..-..+++.++++..+ -.|.+.+|..+.
T Consensus 117 ~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~-----~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 117 NTVALVTD-NAVYHWSMEGESQPVKMFDRHS-----SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp TEEEEECS-SEEEEEESSSSCCCEEEEECCG-----GG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CeEEEEcC-CeeEEecccCCCCchhheecch-----hc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 45655554 4699999876433333322211 11 137788888999999877543 247889999842
Q ss_pred CCCCceeEEEeecCCCcceEEEcCCC---CEEEEEeCC---CeEEEEEccCCceEEeeeccCcCCCCC--cccccccccc
Q psy6522 378 VDSPLGILEVEEHSDKVDSIQWSHSH---LRFVSGSRD---GTALIWYYKCSQWRFIRLDMNTCLPHT--KETSDETNKK 449 (1407)
Q Consensus 378 ~~~~~~i~~l~~h~~~V~sIafSpdg---~~LaSgs~D---GtI~IWDl~t~~~~~~~l~~~~~~~~~--~~~~~~~~~~ 449 (1407)
.....+.+|......+.+..+. .+|+.+... +.+.|.++..... -....... ..........
T Consensus 189 ----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~------~~~~f~kk~vdv~fppe~~~ 258 (494)
T 1bpo_A 189 ----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT------GNQPFPKKAVDVFFPPEAQN 258 (494)
T ss_dssp ----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT------TCCCCCCEEEECCCCTTSTT
T ss_pred ----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc------CCCCccceeeeeeCCccccc
Confidence 2234566776554444433221 144444443 6788888754200 00000000 0000111223
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 450 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
.-..++..++....++..+. -|.|++||+.++.++..-+-....|...+.+. ...=++.....|.|.--.+...
T Consensus 259 DFPvamqvs~kygviyviTK-~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 259 DFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp CCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred CceeEEEecccCCEEEEEec-CceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceEEEEEEccc
Confidence 34456777888888888887 99999999999999988776667776666555 3334444456665555555443
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.071 Score=65.20 Aligned_cols=274 Identities=9% Similarity=-0.021 Sum_probs=144.1
Q ss_pred CEEEEEEcCC-C-CEEEEEECCCeEEEEEcCCCcEEEEEeCC---CCCeEEEEE-------cCCCCEEEEEECCC-----
Q psy6522 206 AVFCVLFDKL-G-EVIVTGADDLLIKLWRARDGKLLATLRGC---SGEISDIAI-------DNRNILLAAGTVDK----- 268 (1407)
Q Consensus 206 ~V~~vafSpd-G-~~LaTGS~DG~V~IWDl~tg~~l~tl~gH---~~~ItsLaf-------SpDg~lLaSgs~DG----- 268 (1407)
....|+|+|. + +++++-...+.|++.|+.++.+...+... ......|+| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4 44444444567999998887766555432 235899999 99999666665543
Q ss_pred --eEEEEeCCC-CceE-----EEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeec-------cccccceeeec
Q psy6522 269 --TIRIWNLQT-LAPI-----SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYK-------LDIDISKTVFH 333 (1407)
Q Consensus 269 --tIrVWDl~t-g~~v-----~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~-------t~~~~~~~~~~ 333 (1407)
.|.+.+... +... ..+... .....++++|+. +.++++-..++.|..+|+. ++.........
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~---g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPIN---GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTT---CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCC---CeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665333 2221 222211 123567888843 3666677778889999987 33220000000
Q ss_pred c--ccccccccCCCCcceEEEEECCCCceEEE-eeCCceEEEEeccCCCCCc-eeEEEeec---C------------CCc
Q psy6522 334 E--PVMFNERIRPGNAHILCSSFSPGGLFLAT-GSGDHHVRVYKMDGVDSPL-GILEVEEH---S------------DKV 394 (1407)
Q Consensus 334 ~--~~~~~~~~~~h~~~I~~vafSpdg~~Las-gs~DG~I~IwDl~~~~~~~-~i~~l~~h---~------------~~V 394 (1407)
. ....... .+.......++|+|+|++|+. -+..+.|+.++.+...... ....+.+. . ...
T Consensus 296 ~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 296 NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 0 0000000 112234578999999995444 4567888887764322110 00112111 1 112
Q ss_pred c-eEEEc-------CCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcC------CC-CCccc-cccccccccEEEEEEC
Q psy6522 395 D-SIQWS-------HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTC------LP-HTKET-SDETNKKIKVTMVAWD 458 (1407)
Q Consensus 395 ~-sIafS-------pdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~------~~-~~~~~-~~~~~~~~~VtslafS 458 (1407)
. .++.. .++.++++-.....|+.++ ..+....+ ...... .. ....- ......-.....|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~Ti-aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTY-AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEE-EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEE-ecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 2 34443 4555666666677888887 34432222 111000 00 00000 0111223456789999
Q ss_pred CCCCEEEEEEecCCeEEEEECCCCceEE
Q psy6522 459 ASDRWVITAINFNFQIKIWDAFNGDLVQ 486 (1407)
Q Consensus 459 pdg~~Lasgs~~DG~I~IWDl~tg~~l~ 486 (1407)
+++..|+++...++.|+.+++....+++
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 9744556665558899999887655544
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.27 E-value=0.058 Score=69.99 Aligned_cols=246 Identities=11% Similarity=0.005 Sum_probs=142.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEeCCCC----ceEE
Q psy6522 208 FCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILL-AAGTVDKTIRIWNLQTL----APIS 282 (1407)
Q Consensus 208 ~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lL-aSgs~DGtIrVWDl~tg----~~v~ 282 (1407)
+|.++.... +|+.. ....|+..++........+. ....+..|+|.+.+..| ++-...+.|+.+++... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 344444333 34333 34568888887665544444 45678899999855544 45555688999998753 2333
Q ss_pred EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEE
Q psy6522 283 VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLA 362 (1407)
Q Consensus 283 ~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~La 362 (1407)
.+.........|++.+.+ +.++++-...+.|.+.++..... ..+. . ........|++.|.+.+|+
T Consensus 465 vi~~~l~~P~GLAvD~~~---~~LY~tD~~~~~I~v~~ldG~~~-~~l~-~----------~~l~~P~gIaVDp~~g~LY 529 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIH---SNIYWTDSVLGTVSVADTKGVKR-KTLF-R----------ENGSKPRAIVVDPVHGFMY 529 (791)
T ss_dssp EECSSCSCCCEEEEETTT---TEEEEEETTTTEEEEEETTSSSE-EEEE-E----------CTTCCEEEEEEETTTTEEE
T ss_pred EEecCCCCcceeeeeecC---CcEEEEecCCCeEEEEeCCCCeE-EEEE-e----------CCCCCcceEEEecCCCCEE
Confidence 443344556788887643 35666666778888888775421 1111 1 1124578899999765555
Q ss_pred Eee-C-CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCC
Q psy6522 363 TGS-G-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHT 439 (1407)
Q Consensus 363 sgs-~-DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~ 439 (1407)
... . .+.|.+.++++... ...+...-.....|++++.+..|+.+. ..+.|...++.......+...
T Consensus 530 wtD~g~~~~I~~~~~dG~~~---~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------- 598 (791)
T 3m0c_C 530 WTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------- 598 (791)
T ss_dssp EEECSSSCEEEEEETTSCCE---EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--------
T ss_pred EecCCCCCeEEEEecCCCce---EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC--------
Confidence 554 3 36788888853221 111222234678899997777666654 456788888765443322110
Q ss_pred ccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEec
Q psy6522 440 KETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKG 490 (1407)
Q Consensus 440 ~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~g 490 (1407)
.........|++ ++.+|+.+....+.|...|..+|+.+..+..
T Consensus 599 ------~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 599 ------EKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp ------TTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ------CCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 001112234554 3457777766578888888878876666543
No 295
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.25 E-value=0.084 Score=68.48 Aligned_cols=211 Identities=9% Similarity=-0.061 Sum_probs=126.8
Q ss_pred cceEEEEECCCCc-eEEEeeCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCCCEE-EEEeCCCeEEEEEccCC
Q psy6522 347 AHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSHLRF-VSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 347 ~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg~~L-aSgs~DGtI~IWDl~t~ 423 (1407)
..+..++|++... ++++-...+.|+.+++.+... ......+.........|++.+.+..| ++-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 5678899998544 445555567888888854221 11122223234567789999877544 45556788999988755
Q ss_pred ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 424 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D-G~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
....+.. ........|+++|.+.+|+.+.... +.|.+.++........+...-.....|++.+
T Consensus 504 ~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 504 KRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567 (791)
T ss_dssp SEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred eEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence 4332211 1223467899999888888776423 7899999865444444444445788999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe-CCCeEEEEEcCCCcccccc
Q psy6522 503 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 503 ~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs-~DG~I~Iwdl~sg~~~~~l 580 (1407)
..+.++++-...+.|...++... .....+. .........+|++ ++..|+.++ ..+.|...+..+|+.+..+
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~--~~~~v~~---~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGG--NRKTILE---DEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSC--SCEEEEE---CTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCeEEEEeCCCCcEEEEecCCC--ceEEEec---CCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 44445555455678999998654 2222111 0111223456666 344666665 4577888887777665444
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.23 E-value=0.11 Score=59.92 Aligned_cols=208 Identities=8% Similarity=-0.072 Sum_probs=125.3
Q ss_pred cceEEEEECCCC-ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCC-EEEEEeCCCeEEEEEccCCc
Q psy6522 347 AHILCSSFSPGG-LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHL-RFVSGSRDGTALIWYYKCSQ 424 (1407)
Q Consensus 347 ~~I~~vafSpdg-~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~-~LaSgs~DGtI~IWDl~t~~ 424 (1407)
..+..++|++.+ .++.+-...+.|..+++.+......+ +...-.....+++.+.+. ++++-...+.|.++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE--EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE--EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 346788998854 44555556788999988544221211 222234567899987554 44555567789998877543
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCCceEEEEecCCCCeEEEEEecC
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPF 503 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~-~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~ 503 (1407)
..... .........++++|.+.+|+.+.. ..+.|..+++........+...-.....|++++.
T Consensus 113 ~~~l~----------------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~ 176 (318)
T 3sov_A 113 RKVLF----------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE 176 (318)
T ss_dssp CEEEE----------------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred EEEEE----------------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEecc
Confidence 22211 012234578999998777777763 2578999887543332223333345689999983
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccccc
Q psy6522 504 DSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQNI 580 (1407)
Q Consensus 504 dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~~l 580 (1407)
.+.+.++-+..+.|..+|+.... ...+. . ........+++.. +.++.+-...+.|..++..+|+....+
T Consensus 177 ~~~lY~aD~~~~~I~~~d~dG~~---~~~~~---~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 177 EQKLYWADAKLNFIHKSNLDGTN---RQAVV---K-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS---CEEEE---C-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCEEEEEECCCCEEEEEcCCCCc---eEEEe---c-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence 44444555567889999987542 22221 1 1234567777753 334444445688999999888765544
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.17 E-value=0.13 Score=60.16 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=60.8
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcE--EEEEe---CCCCCeEEEEEcCC---CCEEEEE-ECC-----Ce
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKL--LATLR---GCSGEISDIAIDNR---NILLAAG-TVD-----KT 269 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~--l~tl~---gH~~~ItsLafSpD---g~lLaSg-s~D-----Gt 269 (1407)
...-..|+|.|+|+++++ ..+|.|.+++ +++. +..+. ........|+|+|+ +..|..+ ... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985554 5679999998 4442 22221 12457899999998 4444443 322 67
Q ss_pred EEEEeCCCCc-----eEE-EEe---ccCCceEEEEeccCCCCCceEEEEEe
Q psy6522 270 IRIWNLQTLA-----PIS-VLV---GHQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 270 IrVWDl~tg~-----~v~-~l~---~H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
|..|++..+. .+. .+. +.......|+|.|++ .++++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG----~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG----MLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS----CEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC----CEEEEEC
Confidence 8888876432 111 132 111123689999975 5555543
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.12 E-value=0.19 Score=61.36 Aligned_cols=261 Identities=11% Similarity=-0.017 Sum_probs=135.9
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEeCCCCceEEEEecc---CCceEEEEe-------ccCCCCCceEEEEEecCC-
Q psy6522 248 EISDIAIDNR--NILLAAGTVDKTIRIWNLQTLAPISVLVGH---QGIITGVNF-------CPLEVNGFNYLASTSTDG- 314 (1407)
Q Consensus 248 ~ItsLafSpD--g~lLaSgs~DGtIrVWDl~tg~~v~~l~~H---~~~VtsLaf-------spd~~~~~~~LaSgs~DG- 314 (1407)
....|+|+|. ++++++....+.|++.|+.++.....+... ......|+| .+++ .+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G----~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA----EYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT----CEEEEEECCCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC----CEEEEEeCCCC
Confidence 4578999983 445555444577999998876665554432 235789999 8865 5555555443
Q ss_pred c------eeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC-CceEEEeeCCceEEEEecc-------CCCC
Q psy6522 315 C------IGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG-GLFLATGSGDHHVRVYKMD-------GVDS 380 (1407)
Q Consensus 315 t------I~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd-g~~Lasgs~DG~I~IwDl~-------~~~~ 380 (1407)
. |.+++............. ... ... .....++++|+ +.++++-..++.|..+|+. +...
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~--~~v-~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDI--QLI-AAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCE--EEE-EEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CcccCceEEEEecCCCCceeecccc--eee-ccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 2 444442221111000000 000 011 23456788994 5555566678889999985 2222
Q ss_pred -----Cc------eeEEEeecCCCcceEEEcCCCCEEEE-EeCCCeEEEEEccCC--ceE--EeeeccCcCCCCCccccc
Q psy6522 381 -----PL------GILEVEEHSDKVDSIQWSHSHLRFVS-GSRDGTALIWYYKCS--QWR--FIRLDMNTCLPHTKETSD 444 (1407)
Q Consensus 381 -----~~------~i~~l~~h~~~V~sIafSpdg~~LaS-gs~DGtI~IWDl~t~--~~~--~~~l~~~~~~~~~~~~~~ 444 (1407)
+. .+... ........|+|+|+|.+|+. -+....|+.+++... ... ........ .....--..
T Consensus 289 ~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~~ 366 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDVG 366 (496)
T ss_dssp CCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCBG
T ss_pred ecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC-CCcccCCcc
Confidence 00 12111 22344578999999995444 456678888765432 210 11111000 000000000
Q ss_pred cccccccEE-EEEEC-------CCCCEEEEEEecCCeEEEEECCCCceEEEEecCC------------------------
Q psy6522 445 ETNKKIKVT-MVAWD-------ASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHT------------------------ 492 (1407)
Q Consensus 445 ~~~~~~~Vt-slafS-------pdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~------------------------ 492 (1407)
....-.... .++.. .++ .|+++...++.|+.++ .+|. +.++.+..
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f 443 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARF 443 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCC
T ss_pred cccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhc
Confidence 001112233 34443 344 4555555489999999 4664 44443320
Q ss_pred CCeEEEEEecCC-CCEEEEEeCCCcEEEEECCCC
Q psy6522 493 NEVFVLESHPFD-SRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 493 ~~V~sLafsP~d-g~~LaSgs~DG~V~IWDi~sg 525 (1407)
.....|++.+ + +.++++=.....|+.+++...
T Consensus 444 ~~P~gIavd~-~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 444 RDVSGLVYDD-VKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp SSEEEEEEET-TTTEEEEEETTTTEEEEEEECCC
T ss_pred CCCcEEEEEC-CCCEEEEEeCCCCEEEEEECCCC
Confidence 1346777777 4 555555555667777777554
No 299
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.11 E-value=1.3 Score=56.95 Aligned_cols=338 Identities=11% Similarity=0.053 Sum_probs=182.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCC----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCC
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-RGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-~gH----~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg 278 (1407)
...|.++..+.+|.+.+ |+..| |..++..+++..... ... ...|.+|....++..|..|+. +-|..++..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 35689999988887665 55554 778887776543211 111 234888888887775555553 45778888776
Q ss_pred ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 279 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 279 ~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
+...........|.+|....++ .|..|+.+| |.+++..+..... ..... .....-....|.++....+|
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g-----~lWigT~~G-l~~~~~~~~~~~~--~~~~~---~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNG-----DLLAGTDNG-LYVYHNDTTPLQH--IIHDS---RNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTC-----CEEEEETTE-EEEECCTTSCCEE--ECCCT---TCTTSCSCSCEEEEEECTTC
T ss_pred eEEeccCCCCCeEEEEEEcCCC-----CEEEEeCCc-eeEEecCCCcEEE--EEcCC---CCcCcCCcCeEEEEEEcCCC
Confidence 5432211123357777765543 444555544 7777765542111 11000 00001123568999888877
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEe-----ecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEe-eecc
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVE-----EHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFI-RLDM 432 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~-----~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~-~l~~ 432 (1407)
.+-+ |+..| +.++... . ........ .....|.++....+|.+. .|+.+| +..++..++..... ....
T Consensus 291 ~lWi-GT~~G-l~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~ 363 (758)
T 3ott_A 291 NIWL-GTDYG-ISLSRYN--S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRM 363 (758)
T ss_dssp CEEE-EESSS-EEEECCC--C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECT
T ss_pred CEEE-EeCCc-ccccccC--C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEecc
Confidence 6444 44456 4444321 1 11111110 112457888888887644 445554 55666554321100 0000
Q ss_pred CcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe-c-----CCCCeEEEEEecCCCC
Q psy6522 433 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-G-----HTNEVFVLESHPFDSR 506 (1407)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~-g-----H~~~V~sLafsP~dg~ 506 (1407)
.. .........|.++.-..+|.+.+ ++ ++-|..||..+++...... . ....|.++.... ++
T Consensus 364 ~~--------~~~~l~~~~v~~i~~d~~g~lWi-gt--~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g- 430 (758)
T 3ott_A 364 GD--------KTYPLSHNRIRHIYEDKEQQLWI-AT--DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AG- 430 (758)
T ss_dssp TC--------SSSCCSCSCEEEEEECTTSCEEE-EE--TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TS-
T ss_pred CC--------cCCCCCCCceEEEEECCCCCEEE-Ee--CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CC-
Confidence 00 00011234688898888887554 43 3468999988876543221 1 224578877655 44
Q ss_pred EEEEEeCCCcEEEEECCCCCc---cce---eeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 507 VLLSAGHDGLIIIWDILSSKQ---RGY---KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 507 ~LaSgs~DG~V~IWDi~sgk~---~~l---~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
.|..|+..+-|.++|..+... ... ..+. ...+.....|.++...++|.+.+.++..+-|..|+..+++.
T Consensus 431 ~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 431 QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS-VHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV 505 (758)
T ss_dssp EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred CEEEEECCCceEEEccccccccCCcceecccccc-cccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence 566677777788888542100 011 1111 11122234689999999999776444445688889877654
No 300
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.09 E-value=1.4 Score=56.75 Aligned_cols=329 Identities=11% Similarity=0.081 Sum_probs=176.0
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEE
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISV 283 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~ 283 (1407)
...|.++....+| .|..|+.+| +..||..+.+...........|.++.. .++ .|..|+.+ -|..++..+++.. .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~ 135 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-S 135 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-E
Confidence 3569999888776 566667665 789998876543211112345777765 345 45556655 5778888765533 2
Q ss_pred Ee-----ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCC
Q psy6522 284 LV-----GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGG 358 (1407)
Q Consensus 284 l~-----~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg 358 (1407)
+. .....|.++....++ . |..++.+| |..++..+..... ...+. ........|.++....++
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g----~-lWigt~~G-l~~~~~~~~~~~~---~~~~~----~~~~~~~~i~~i~~d~~~ 202 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDN----Q-IYVGTYNG-LCRYIPSNGKFEG---IPLPV----HSSQSNLFVNSLLEDTTR 202 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTC----C-EEEEETTE-EEEEETTTTEEEE---ECCCC----CTTCSSCCEEEEEEETTT
T ss_pred eccCCCCcCCCeEEEEEEcCCC----C-EEEEeCCC-HhhCccCCCceEE---ecCCC----ccccccceeEEEEEECCC
Confidence 21 112457777766543 3 44455554 6667755442110 00000 000112458888888776
Q ss_pred ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCC
Q psy6522 359 LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPH 438 (1407)
Q Consensus 359 ~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~ 438 (1407)
..|-+|+. +-|..++... ........+ ....|.+|....+|.+.+ |+. +-+.+++..++..........
T Consensus 203 ~~lWigt~-~Gl~~~~~~~-~~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~----- 271 (758)
T 3ott_A 203 QCVWIGTE-GYLFQYFPST-GQIKQTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSR----- 271 (758)
T ss_dssp TEEEEEEE-EEEEEEETTT-TEEEEEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTT-----
T ss_pred CEEEEEEC-CCCeEEcCCC-CeEEeccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCC-----
Confidence 65555554 4577788632 111112112 234588888888887544 444 457788877665433211100
Q ss_pred CccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe-------cCCCCeEEEEEecCCCCEEEEE
Q psy6522 439 TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK-------GHTNEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 439 ~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~-------gH~~~V~sLafsP~dg~~LaSg 511 (1407)
....-....|.++..+.+|.+-+ ++. .| |.++.. ... ...+. .....|.++.... ++.+. .|
T Consensus 272 ----~~~~l~~~~i~~i~~D~~g~lWi-GT~-~G-l~~~~~-~~~-~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lW-iG 340 (758)
T 3ott_A 272 ----NIQSLTNNIIWNIFADQEHNIWL-GTD-YG-ISLSRY-NSA-LQFIPISQITGTGDGNQFYSLFRDS-KGFYW-FG 340 (758)
T ss_dssp ----CTTSCSCSCEEEEEECTTCCEEE-EES-SS-EEEECC-CC--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEE-EE
T ss_pred ----CcCcCCcCeEEEEEEcCCCCEEE-EeC-Cc-cccccc-CCc-eeEEecccCCCCCCCceEEEEEEcC-CCCEE-Ee
Confidence 00011334688998888776544 444 56 444433 221 11111 1134688887665 55544 44
Q ss_pred eCCCcEEEEECCCCCccceeeeeee--ecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcc
Q psy6522 512 GHDGLIIIWDILSSKQRGYKWFHNI--VEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKR 576 (1407)
Q Consensus 512 s~DG~V~IWDi~sgk~~~l~~~~~~--~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~ 576 (1407)
+.+| |..++..++....+..+... ........|.++.-..+|++.+ |+ ++-|..|+..+++.
T Consensus 341 t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~ 404 (758)
T 3ott_A 341 GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF 404 (758)
T ss_dssp ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE
T ss_pred eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE
Confidence 5554 66676654321222222200 0011234688888888887555 44 45799999887654
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.06 E-value=1.3 Score=55.99 Aligned_cols=347 Identities=14% Similarity=0.036 Sum_probs=190.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEeCCCC
Q psy6522 202 GHLSAVFCVLFDKLGEVIVTGAD--DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT-VDKTIRIWNLQTL 278 (1407)
Q Consensus 202 GH~~~V~~vafSpdG~~LaTGS~--DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs-~DGtIrVWDl~tg 278 (1407)
.....-..|+++|...+|+.... .+.|...++...... .+...-.....|++++++..|..+. ..+.|...++...
T Consensus 120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 34456789999996556665542 467888887554433 3333456788999999877666554 4678999998754
Q ss_pred ceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeec--ccc--ccccc-cC---------C
Q psy6522 279 APISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFH--EPV--MFNER-IR---------P 344 (1407)
Q Consensus 279 ~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~--~~~--~~~~~-~~---------~ 344 (1407)
.. ..+........+|++..+ .++++-...+.|...|..++......... .+. ..... .. .
T Consensus 199 ~~-~v~~~~l~~P~glav~~~-----~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~n 272 (628)
T 4a0p_A 199 NR-EVIADDLPHPFGLTQYQD-----YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSN 272 (628)
T ss_dssp SC-EEEEECCSCEEEEEEETT-----EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTG
T ss_pred ce-EEeeccCCCceEEEEECC-----EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCC
Confidence 43 344433344567777541 45555555777887776555332221110 000 00000 00 0
Q ss_pred CC----------cceEEEE-----ECCCC-------ceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCC
Q psy6522 345 GN----------AHILCSS-----FSPGG-------LFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHS 402 (1407)
Q Consensus 345 h~----------~~I~~va-----fSpdg-------~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpd 402 (1407)
+. +...|.| ..+++ .+|+.+. ...|+-+.+...........+ ..-..+..|+|++.
T Consensus 273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~-~~~~~~~~ld~d~~ 350 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPI-HSLRNVRAIDYDPL 350 (628)
T ss_dssp GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCC-TTCSCEEEEEEETT
T ss_pred CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEe-hhcCCceEEEEecC
Confidence 00 1112211 11222 2233322 234444444322111111111 11244678888886
Q ss_pred CCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC
Q psy6522 403 HLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN 481 (1407)
Q Consensus 403 g~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t 481 (1407)
...|+.+. ..+.|+.+++.......+.... .........+..++++..+..|+.+....+.|.+.++.
T Consensus 351 ~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~----------~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 351 DKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS----------VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEEC------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CCeEEEEecCcceEEEEEcCCCCceEEEEcc----------cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 66555443 4567777766543211111000 00001233577899999888888776658899999985
Q ss_pred CceEEEE-ecCCCCeEEEEEecCCCCEEEEEeCCC--cEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEE
Q psy6522 482 GDLVQVL-KGHTNEVFVLESHPFDSRVLLSAGHDG--LIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCA 558 (1407)
Q Consensus 482 g~~l~~l-~gH~~~V~sLafsP~dg~~LaSgs~DG--~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LA 558 (1407)
|+....+ .........|++.|..+.+++|-.... .|...++... . ...+. ...-.....+++++++..|.
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~--~-~~~l~----~~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGT--E-REVLF----FSGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSC--S-CEEEE----CSSCSCEEEEEEETTTTEEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCC--C-cEEEE----eccCCCccEEEEeCCCCEEE
Confidence 5554444 344567899999995666666644333 5666666543 2 22221 12234678999999988888
Q ss_pred EEeC-CCeEEEEEcCCCc
Q psy6522 559 LTDS-YGHLLVYGLGGFK 575 (1407)
Q Consensus 559 sgs~-DG~I~Iwdl~sg~ 575 (1407)
.++. .+.|..+++....
T Consensus 493 w~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 493 WADSDLRRIESSDLSGAN 510 (628)
T ss_dssp EEETTTTEEEEEETTSCS
T ss_pred EEeCCCCEEEEEeCCCCc
Confidence 8866 4789999986543
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.90 E-value=0.1 Score=60.75 Aligned_cols=197 Identities=13% Similarity=0.169 Sum_probs=119.9
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCC----CC---EEEEEEC---CCeEEEEeCC--CCce
Q psy6522 213 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNR----NI---LLAAGTV---DKTIRIWNLQ--TLAP 280 (1407)
Q Consensus 213 SpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpD----g~---lLaSgs~---DGtIrVWDl~--tg~~ 280 (1407)
.|...++++....+-+.|||+ +|+.++.+.. +.++.+.+-|+ |+ ++++... +++|.||++. ++ .
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~ 112 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T 112 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred CCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence 334556676677888999999 9999998864 56777776653 22 3333333 5789999773 33 3
Q ss_pred EEEEec------cC-CceEEEEe--ccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 281 ISVLVG------HQ-GIITGVNF--CPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 281 v~~l~~------H~-~~VtsLaf--spd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
+..+.. .. ..+..+|+ +|.. +..++++...+|.+..|++......... . .....+.. ...+..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~g~~~--~---~lVR~f~l-gsq~Eg 184 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKNGYIS--G---KKVRAFKM-NSQTEG 184 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTTSCEE--E---EEEEEEEC-SSCEEE
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCCCccc--c---eEEEEecC-CCCcce
Confidence 444421 11 45667777 5532 3357888889999999998542111000 0 00111111 256888
Q ss_pred EEECCCCceEEEeeCCceEEEEeccCCC--CCceeEEEe-ec-CCCcceEEE--cCCCC-EEEEEe-CCCeEEEEEcc
Q psy6522 352 SSFSPGGLFLATGSGDHHVRVYKMDGVD--SPLGILEVE-EH-SDKVDSIQW--SHSHL-RFVSGS-RDGTALIWYYK 421 (1407)
Q Consensus 352 vafSpdg~~Lasgs~DG~I~IwDl~~~~--~~~~i~~l~-~h-~~~V~sIaf--Spdg~-~LaSgs-~DGtI~IWDl~ 421 (1407)
|...+....|+++-.+..|..|+..... ....+..+. ++ ...+..|++ .+++. +|++++ .++++.+||..
T Consensus 185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8999888899999888666666643222 222333221 12 235777877 45555 566655 67799999986
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.87 E-value=0.49 Score=55.30 Aligned_cols=243 Identities=12% Similarity=0.039 Sum_probs=122.0
Q ss_pred CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC---CceEEEee
Q psy6522 289 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGS 365 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd---g~~Lasgs 365 (1407)
.....|+|.|++ . |+++..+|.|.+++. .+. ......+ ...........|+|+|+ +..|+++.
T Consensus 29 ~~P~~ia~~pdG----~-l~V~e~~g~I~~~d~-~G~---~~~~~~~-----v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 29 EVPWSIAPLGGG----R-YLVTERPGRLVLISP-SGK---KLVASFD-----VANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp SCEEEEEEEETT----E-EEEEETTTEEEEECS-SCE---EEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCCeEEEEcCCC----e-EEEEeCCCEEEEEeC-CCc---eEeeccc-----eeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 456899999975 5 555566798988863 231 1111111 11122356789999997 44454443
Q ss_pred C----C----ceEEEEeccCCC-C---CceeEE-Eee-cCCCcceEEEcCCCCEEEEEeCC-------------CeEEEE
Q psy6522 366 G----D----HHVRVYKMDGVD-S---PLGILE-VEE-HSDKVDSIQWSHSHLRFVSGSRD-------------GTALIW 418 (1407)
Q Consensus 366 ~----D----G~I~IwDl~~~~-~---~~~i~~-l~~-h~~~V~sIafSpdg~~LaSgs~D-------------GtI~IW 418 (1407)
. + +.|..|+..... . ...+.. +.. .......|+|.|+|.++++.+.. |.|.-+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence 3 3 567777764321 1 111111 221 11235679999999866664322 233333
Q ss_pred EccCCceEEeeeccCcCCCCCc----cccccccccccEEEEEECCCCCEEEEEEecCC---eEEEEECCC--------C-
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTK----ETSDETNKKIKVTMVAWDASDRWVITAINFNF---QIKIWDAFN--------G- 482 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG---~I~IWDl~t--------g- 482 (1407)
+... ..+... ......++ .....++|+++...|+++..... .|.+...-. +
T Consensus 175 ~~dG------------~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~ 241 (354)
T 3a9g_A 175 DEEG------------RPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGK 241 (354)
T ss_dssp CTTS------------CCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSC
T ss_pred cCCC------------CCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCC
Confidence 3221 100000 00000111 22456899994334444433121 243332110 0
Q ss_pred -------ceEEEEecCCCCeEEEEEec------CCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEE
Q psy6522 483 -------DLVQVLKGHTNEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGK 549 (1407)
Q Consensus 483 -------~~l~~l~gH~~~V~sLafsP------~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~sla 549 (1407)
.++..+.........++|.. .++.++++.-..+.|...++... ..+.....++.+ ....+.+++
T Consensus 242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~--g~~~~~~~~~~~-~~~rp~~v~ 318 (354)
T 3a9g_A 242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN--MEVRKISTFFKN-VFGRLRDVV 318 (354)
T ss_dssp CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG--GCEEEEEEECTT-TSCCEEEEE
T ss_pred CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC--CcccceeeeccC-CCCCeeEEE
Confidence 12223311123567788741 26677777666778888888753 112212222222 245789999
Q ss_pred ECCCCCEEEEEe
Q psy6522 550 WSPDGTTCALTD 561 (1407)
Q Consensus 550 fSpDG~~LAsgs 561 (1407)
+.|||.++++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999998766664
No 304
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.83 E-value=0.26 Score=57.58 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=60.3
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-EEEEEe---CCCCCeEEEEEcCC---CCEEEEEEC----C----C
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGK-LLATLR---GCSGEISDIAIDNR---NILLAAGTV----D----K 268 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~-~l~tl~---gH~~~ItsLafSpD---g~lLaSgs~----D----G 268 (1407)
...-.+|+|.|+|++++ +..+|.|.+++ .+++ .+..+. ........|+|+|+ +..|..+.. + +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997544 56679999997 4554 222221 12356899999997 444444332 3 5
Q ss_pred eEEEEeCCCC--c-----eE-EEEec-cCCceEEEEeccCCCCCceEEEEEe
Q psy6522 269 TIRIWNLQTL--A-----PI-SVLVG-HQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 269 tIrVWDl~tg--~-----~v-~~l~~-H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
.|..|+.... . .+ ..+.. .......|+|.|++ .++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG----~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG----MLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS----CEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC----cEEEEEC
Confidence 6777776543 1 11 11221 11124678999975 5555543
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.83 E-value=0.24 Score=57.67 Aligned_cols=211 Identities=10% Similarity=0.093 Sum_probs=123.9
Q ss_pred CCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCce---EEEEEec---CCceeEEeecccccccee
Q psy6522 257 RNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFN---YLASTST---DGCIGFWKYKLDIDISKT 330 (1407)
Q Consensus 257 Dg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~---~LaSgs~---DGtI~vWDl~t~~~~~~~ 330 (1407)
...+++.....+-+.|||+ +|+.+..+.. +.++.+..-|.-.-++. +++++.. +++|.+|++.........
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456776777889999999 7999888854 56777777662100111 3333333 578999988532111111
Q ss_pred eecc--ccccccccCCCCcceEEEEE--CCC-Cc-eEEEeeCCceEEEEeccCCC----CCceeEEEeecCCCcceEEEc
Q psy6522 331 VFHE--PVMFNERIRPGNAHILCSSF--SPG-GL-FLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 331 ~~~~--~~~~~~~~~~h~~~I~~vaf--Spd-g~-~Lasgs~DG~I~IwDl~~~~----~~~~i~~l~~h~~~V~sIafS 400 (1407)
.... +. ......+..+|+ ++. +. ++++...+|.+..|++.... ....+..+. ..+.+-.+.+.
T Consensus 116 i~~~~~pv------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvD 188 (355)
T 3amr_A 116 MTDPDHPI------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAAD 188 (355)
T ss_dssp CSCTTSCE------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEE
T ss_pred ccccccCc------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEc
Confidence 1000 10 001134555666 774 43 67788888999999984321 223334443 34578888899
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCc---eEEeeeccCcCCCCCccccccccccccEEEEEE--CCCCC-EEEEEEecCCeE
Q psy6522 401 HSHLRFVSGSRDGTALIWYYKCSQ---WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW--DASDR-WVITAINFNFQI 474 (1407)
Q Consensus 401 pdg~~LaSgs~DGtI~IWDl~t~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf--Spdg~-~Lasgs~~DG~I 474 (1407)
+....|+.+-.+..|..++..... ...+.. .........+..|++ .++++ +|++++..+..+
T Consensus 189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~------------~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR------------ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE------------BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred CCCCeEEEecccceEEEEeCCcCCCCCceEEEE------------ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 888899999998665555533111 000000 001112235666766 56666 788888668899
Q ss_pred EEEECC-CCceEEEEe
Q psy6522 475 KIWDAF-NGDLVQVLK 489 (1407)
Q Consensus 475 ~IWDl~-tg~~l~~l~ 489 (1407)
.+||.. +.+.+..|.
T Consensus 257 ~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 257 AIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEESSTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEE
Confidence 999986 566665554
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.78 E-value=0.074 Score=61.42 Aligned_cols=175 Identities=10% Similarity=0.044 Sum_probs=114.3
Q ss_pred EeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEE---CCCCC
Q psy6522 387 VEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAW---DASDR 462 (1407)
Q Consensus 387 l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vtslaf---Spdg~ 462 (1407)
+......-.++.|++....|+.++ ..|+|..|+...+....+... . ..........+..|.| .++++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~------~---~s~~g~~~~~~sGl~~~~~D~~gr 78 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID------G---ASSNGDGEQQMSGLSLLTHDNSKR 78 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT------T---TCCSSCCSEEEEEEEESSSSSCCE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC------C---ccccCCCcceeeEEEEeccCCCCc
Confidence 344455567899988666676666 789999999876543332110 0 0000112234578999 68877
Q ss_pred EEEEEEe------------cCCeEEEEECC---CCceEEEEe--cCC-----------CCeEEEEEecCCCCEEEEEeCC
Q psy6522 463 WVITAIN------------FNFQIKIWDAF---NGDLVQVLK--GHT-----------NEVFVLESHPFDSRVLLSAGHD 514 (1407)
Q Consensus 463 ~Lasgs~------------~DG~I~IWDl~---tg~~l~~l~--gH~-----------~~V~sLafsP~dg~~LaSgs~D 514 (1407)
++++... .+..|..||+. +++.+.... ... .....++..+ +|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~ 157 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALG 157 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEES
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCC
Confidence 7775431 15789999999 787766554 111 2478899999 99999999888
Q ss_pred -CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 515 -GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 515 -G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
+.|...+.... .....+............+.++++|||..|++....|.|..+|+..
T Consensus 158 ~~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 158 MPAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 88777766543 2221111111111223477999999999999998899999999884
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.73 E-value=0.065 Score=61.94 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=105.5
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcEEEEEeCC-----C--CCeEEEEE---cCCCCEEEEEE-----------
Q psy6522 208 FCVLFDKLGEVIVTGA-DDLLIKLWRARDGKLLATLRGC-----S--GEISDIAI---DNRNILLAAGT----------- 265 (1407)
Q Consensus 208 ~~vafSpdG~~LaTGS-~DG~V~IWDl~tg~~l~tl~gH-----~--~~ItsLaf---SpDg~lLaSgs----------- 265 (1407)
-|++|++....|..++ ..+.|..||...+......-.+ . ..+..|.| .+++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 3788988666666666 6899999999766544332211 1 13689999 68887877644
Q ss_pred --CCCeEEEEeCC---CCceEEEEe--cc-----------CCceEEEEeccCCCCCceEEEEEecC-CceeEEeeccccc
Q psy6522 266 --VDKTIRIWNLQ---TLAPISVLV--GH-----------QGIITGVNFCPLEVNGFNYLASTSTD-GCIGFWKYKLDID 326 (1407)
Q Consensus 266 --~DGtIrVWDl~---tg~~v~~l~--~H-----------~~~VtsLafspd~~~~~~~LaSgs~D-GtI~vWDl~t~~~ 326 (1407)
.+..|..+|+. +++.+.... .. ......++..+++ +..++++.. +.|...+.... .
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G----naYVt~s~~~~~I~rV~pdG~-~ 170 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG----NSYVAFALGMPAIARVSADGK-T 170 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS----CEEEEEEESSCEEEEECTTSC-C
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC----CEEEeCCCCCCeEEEEeCCCC-E
Confidence 26789999999 888776554 11 1247788898866 788888777 76666555433 1
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEecc
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMD 376 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~ 376 (1407)
........+ ........+.|+++|+|.+|++....|.|..+|+.
T Consensus 171 ~~~~~~~~~------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESG------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCC------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCC------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 111111111 01112346789999999988888779999999985
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.69 E-value=0.44 Score=55.55 Aligned_cols=248 Identities=11% Similarity=0.063 Sum_probs=120.7
Q ss_pred CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCC---CceEEEee
Q psy6522 289 GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPG---GLFLATGS 365 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpd---g~~Lasgs 365 (1407)
.....|+|.|++ . |+++..+|.|.+++ .+. .......+ ...........++|+|+ +..|+++.
T Consensus 31 ~~P~~ia~~pdG----~-l~V~e~~g~I~~i~--~g~--~~~~~~~~-----v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 31 EVPWALAFLPDG----G-MLIAERPGRIRLFR--EGR--LSTYAELS-----VYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp SCEEEEEECTTS----C-EEEEETTTEEEEEE--TTE--EEEEEECC-----CCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCC----e-EEEEeCCCeEEEEE--CCC--ccEeecce-----EeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 346799999976 5 45556678898887 221 11111111 11122356789999998 44554443
Q ss_pred C-C-----ceEEEEeccCCC--CCceeEE-Ee---ecCCCcceEEEcCCCCEEEEEeCC-------------CeEEEEEc
Q psy6522 366 G-D-----HHVRVYKMDGVD--SPLGILE-VE---EHSDKVDSIQWSHSHLRFVSGSRD-------------GTALIWYY 420 (1407)
Q Consensus 366 ~-D-----G~I~IwDl~~~~--~~~~i~~-l~---~h~~~V~sIafSpdg~~LaSgs~D-------------GtI~IWDl 420 (1407)
. . +.|..|+..... ....+.. +. ........|+|.|+|.++++.+.. |.|.-++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 3 2 677788874221 0111211 22 111234689999999766654322 33433333
Q ss_pred cCCceEEeeeccCcCCCC---CccccccccccccEEEEEECCCCCEEEEEEecCCe--------EEEEECCC--------
Q psy6522 421 KCSQWRFIRLDMNTCLPH---TKETSDETNKKIKVTMVAWDASDRWVITAINFNFQ--------IKIWDAFN-------- 481 (1407)
Q Consensus 421 ~t~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~--------I~IWDl~t-------- 481 (1407)
.. .. ........ ........+ ......++|+|+...|+++...... |.+.....
T Consensus 177 dG-~~-----p~~npf~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 177 EG-EP-----APGNPFLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp TS-SB-----CTTCTTTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred CC-CC-----CCCCcccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 21 00 00000000 000000011 1235668999943334444331332 33332110
Q ss_pred --------CceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccc-eeeeeeeecCCCCCceeEEEECC
Q psy6522 482 --------GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRG-YKWFHNIVEGQGEGALFDGKWSP 552 (1407)
Q Consensus 482 --------g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~-l~~~~~~~~g~~~~~I~slafSp 552 (1407)
..++..+. +......++|. ++.++++.-..+.|...++....... ......++. ....+.++++.|
T Consensus 250 g~~~~~~~~~p~~~~~-~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~p 324 (352)
T 2ism_A 250 GRGNDPRYRDPLYFWP-QGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGP 324 (352)
T ss_dssp SCCCCTTSCCCSEECT-TCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECT
T ss_pred CCCCCCCCcCCeEecC-CCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECC
Confidence 01222332 22345677773 56777766667788888776542100 111122221 235789999999
Q ss_pred CCCEEEEEeC
Q psy6522 553 DGTTCALTDS 562 (1407)
Q Consensus 553 DG~~LAsgs~ 562 (1407)
||.++++...
T Consensus 325 dG~lyv~~~~ 334 (352)
T 2ism_A 325 DGALYVTTSN 334 (352)
T ss_dssp TSCEEEEECS
T ss_pred CCcEEEEEeC
Confidence 9987776643
No 309
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.52 E-value=0.0046 Score=79.37 Aligned_cols=212 Identities=9% Similarity=-0.068 Sum_probs=118.3
Q ss_pred cceEEEEECCCCceEEEe-eCCceEEEEeccCCCC-CceeEEEeecCCCcceEEEcCCC-CEEEEEeCCCeEEEEEccCC
Q psy6522 347 AHILCSSFSPGGLFLATG-SGDHHVRVYKMDGVDS-PLGILEVEEHSDKVDSIQWSHSH-LRFVSGSRDGTALIWYYKCS 423 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasg-s~DG~I~IwDl~~~~~-~~~i~~l~~h~~~V~sIafSpdg-~~LaSgs~DGtI~IWDl~t~ 423 (1407)
..+..++|++.+..|+.+ ...+.|..+++.+... ......+.........|++.+.+ .++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678898866655554 4567899998854110 01111111112345678888544 44445456678988887755
Q ss_pred ceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC-CeEEEEECCCCceEEEEecCCCCeEEEEEec
Q psy6522 424 QWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN-FQIKIWDAFNGDLVQVLKGHTNEVFVLESHP 502 (1407)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D-G~I~IWDl~tg~~l~~l~gH~~~V~sLafsP 502 (1407)
....+.. ........|+++|.+.+|+.+.... +.|.++++........+...-.....|+|+|
T Consensus 486 ~~~~l~~----------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~ 549 (699)
T 1n7d_A 486 KRKTLFR----------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 549 (699)
T ss_dssp CEEEECC----------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECT
T ss_pred ceEEEEe----------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEec
Confidence 4322210 0112235678888877777665323 6788887653322222222233467899998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEE-eCCCeEEEEEcCCCccccccC
Q psy6522 503 FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT-DSYGHLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 503 ~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsg-s~DG~I~Iwdl~sg~~~~~lp 581 (1407)
..+.++++-+..+.|.++++.... ...+.. ..........|++..+ .|+.+ ...+.|..++..+|+.+..+.
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~--~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGN---RKTILE--DEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSC---CEEECC--CSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCEEEEEecCCCeEEEEccCCCc---eEEEEe--cCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 456666666677899999987542 122210 0011123445566443 44444 455789999988887765553
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.52 E-value=0.68 Score=56.06 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=60.6
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEE--EEEeC------CCCCeEEEEEcCC---CCEEEEE-EC-----
Q psy6522 204 LSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL--ATLRG------CSGEISDIAIDNR---NILLAAG-TV----- 266 (1407)
Q Consensus 204 ~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l--~tl~g------H~~~ItsLafSpD---g~lLaSg-s~----- 266 (1407)
.....+|+|.|+|+++++-...+.|.+++..++... ..+.. ....+..|+|+|+ +..|..+ +.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776543457888886656532 22221 2456789999995 4444443 32
Q ss_pred -------CCeEEEEeCCCC--c-----eEE-EEec-cCCceEEEEeccCCCCCceEEEEEec
Q psy6522 267 -------DKTIRIWNLQTL--A-----PIS-VLVG-HQGIITGVNFCPLEVNGFNYLASTST 312 (1407)
Q Consensus 267 -------DGtIrVWDl~tg--~-----~v~-~l~~-H~~~VtsLafspd~~~~~~~LaSgs~ 312 (1407)
...|.-|++..+ . .+. .+.. .......|+|.|++ .++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG----~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ----KIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS----CEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC----eEEEEECC
Confidence 134555554321 1 111 1221 12346889999976 55555543
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.50 E-value=0.55 Score=54.79 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=57.9
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEE-------eCCCCCeEEEEEcCC---CCEEEEE-EC-------
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATL-------RGCSGEISDIAIDNR---NILLAAG-TV------- 266 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl-------~gH~~~ItsLafSpD---g~lLaSg-s~------- 266 (1407)
..-..|+|.|+|++|+++...|.|++++. ++.....+ .........|+|+|+ +..|..+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34679999999983445557899999985 34322111 112346789999996 4444433 32
Q ss_pred CCeEEEEeCCCC--c--eEEE-Eecc------CCceEEEEeccCCCCCceEEEEEec
Q psy6522 267 DKTIRIWNLQTL--A--PISV-LVGH------QGIITGVNFCPLEVNGFNYLASTST 312 (1407)
Q Consensus 267 DGtIrVWDl~tg--~--~v~~-l~~H------~~~VtsLafspd~~~~~~~LaSgs~ 312 (1407)
...|..|++... . .... +... ......|.|.|++ .++++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG----~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG----YLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS----EEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC----cEEEEECC
Confidence 235666666432 1 1111 2111 1123579999975 55555443
No 312
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.39 E-value=2.8 Score=50.69 Aligned_cols=117 Identities=12% Similarity=-0.013 Sum_probs=62.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEE--EEec------cCCceEEEEeccCCCCCceEEEEEec-----
Q psy6522 246 SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS--VLVG------HQGIITGVNFCPLEVNGFNYLASTST----- 312 (1407)
Q Consensus 246 ~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~--~l~~------H~~~VtsLafspd~~~~~~~LaSgs~----- 312 (1407)
-.....|+|.|+|.++++-...+.|.+++..++.... .+.. ....+..|+|+|+-..++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999987775444578888876554322 2211 23567799999963222344444332
Q ss_pred -------CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee
Q psy6522 313 -------DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 365 (1407)
Q Consensus 313 -------DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs 365 (1407)
...|.-|++...... .. .....+.............|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~--~~-~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDT--LE-KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTE--EE-EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCC--cC-CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 124555554332100 00 000000000011123478899999998776644
No 313
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.37 E-value=1.5 Score=51.13 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=65.1
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEE--EEE----eCCCCCeEEEEEcCC---CCEE-EEEE--C
Q psy6522 199 VNLGHLSAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLL--ATL----RGCSGEISDIAIDNR---NILL-AAGT--V 266 (1407)
Q Consensus 199 ~L~GH~~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l--~tl----~gH~~~ItsLafSpD---g~lL-aSgs--~ 266 (1407)
.+-.....-+.|+|.|+|.++++--..|.|++++..+++.. ..+ .........|+|+|+ +..| ++-+ .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 34444566789999999997777655899999987666542 222 123567899999995 3444 4322 3
Q ss_pred CCeEEEEeCCCC----------ceEE-EEe-ccCCceEEEEeccCCCCCceEEEEEe
Q psy6522 267 DKTIRIWNLQTL----------APIS-VLV-GHQGIITGVNFCPLEVNGFNYLASTS 311 (1407)
Q Consensus 267 DGtIrVWDl~tg----------~~v~-~l~-~H~~~VtsLafspd~~~~~~~LaSgs 311 (1407)
++.|.-|.+..+ +.+. .+. ........|.|.|++ .++++.+
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG----~Lyvt~G 158 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK----MLYAGTG 158 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS----CEEEECB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC----CEEEEEC
Confidence 455666665431 1111 121 111234579999975 5656554
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.26 E-value=1.4 Score=51.35 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=123.8
Q ss_pred EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEE--EE----eccCCceEEEEeccCCCCCceEEEEEe--c
Q psy6522 241 TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPIS--VL----VGHQGIITGVNFCPLEVNGFNYLASTS--T 312 (1407)
Q Consensus 241 tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~--~l----~~H~~~VtsLafspd~~~~~~~LaSgs--~ 312 (1407)
.+...-.....|+|.|||.+|++--..|.|++++..+++... .+ .........|+|+|+-..++.+.++-+ .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 344344567899999999987776558999999876555322 12 123456789999985211123333222 3
Q ss_pred CCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeC-------------CceEEEEeccCCC
Q psy6522 313 DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSG-------------DHHVRVYKMDGVD 379 (1407)
Q Consensus 313 DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~-------------DG~I~IwDl~~~~ 379 (1407)
++.|.-|.+................+.............|+|.|+|.+.++.+. .|.|.-++.++..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 444555554432100000000000000000111233467999999987776442 2444444443210
Q ss_pred ---C---CceeEEEeecCCCcceEEEcCCCCEEEEE-eCCCeEEEEEccCCceE---EeeeccCcCCCCCcccccccccc
Q psy6522 380 ---S---PLGILEVEEHSDKVDSIQWSHSHLRFVSG-SRDGTALIWYYKCSQWR---FIRLDMNTCLPHTKETSDETNKK 449 (1407)
Q Consensus 380 ---~---~~~i~~l~~h~~~V~sIafSpdg~~LaSg-s~DGtI~IWDl~t~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 449 (1407)
. ...+. ..+|. ....++|+|+|.++++- +.++.-.|--+..+... ... .................+.
T Consensus 186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~-g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAE-GKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp CTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCC-SSCCCTTCCCCSEEECTTT
T ss_pred cCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCccc-CCCCCccccCCcEecCCCC
Confidence 0 11121 22443 45689999988755543 23332233223332210 000 0000000000000001111
Q ss_pred ccEEEEEECCCCCEEEEEEecCCeEEEEECCCCc----eEEEEecCCCCeEEEEEecCCCCEEEEEe
Q psy6522 450 IKVTMVAWDASDRWVITAINFNFQIKIWDAFNGD----LVQVLKGHTNEVFVLESHPFDSRVLLSAG 512 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~----~l~~l~gH~~~V~sLafsP~dg~~LaSgs 512 (1407)
.....++|. +|..++.... .+.|....+.... ....+.+....+..|+..| |+.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~-~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLR-GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEEST-TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeecccc-CCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 244556665 3444443333 5556555554332 2233444456788888888 776665543
No 315
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.20 E-value=0.13 Score=57.98 Aligned_cols=192 Identities=11% Similarity=0.043 Sum_probs=96.7
Q ss_pred CCceEEEeeCC-----ceEEEEeccCCCC--CceeEEEeecCCCcceEEEcCCCCEEEEEeCC-----CeEEEEEccCCc
Q psy6522 357 GGLFLATGSGD-----HHVRVYKMDGVDS--PLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKCSQ 424 (1407)
Q Consensus 357 dg~~Lasgs~D-----G~I~IwDl~~~~~--~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D-----GtI~IWDl~t~~ 424 (1407)
++.+++.|+.+ ..+.+||+..... ...+..+...... .+++. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56777777754 3588888843320 2222222111111 12222 256667777644 368899999998
Q ss_pred eEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec----CCeEEEEECCCCceEEEEecCCCC-eEEEE
Q psy6522 425 WRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF----NFQIKIWDAFNGDLVQVLKGHTNE-VFVLE 499 (1407)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~----DG~I~IWDl~tg~~l~~l~gH~~~-V~sLa 499 (1407)
|..... + +. ......++.+ +++.++.++.. -..+.+||..+.+-...-...... -.+++
T Consensus 140 W~~~~~-~----p~---------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 203 (301)
T 2vpj_A 140 WSMLGD-M----QT---------AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA 203 (301)
T ss_dssp EEEEEE-C----SS---------CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred EEECCC-C----CC---------CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE
Confidence 876531 1 00 0111122222 56666665541 246889998876543321111111 11222
Q ss_pred EecCCCCEEEEEeCC-----CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC-----CeEEEE
Q psy6522 500 SHPFDSRVLLSAGHD-----GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY-----GHLLVY 569 (1407)
Q Consensus 500 fsP~dg~~LaSgs~D-----G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D-----G~I~Iw 569 (1407)
.. ++.+++.||.+ ..|.+||+.+.+-..+..+. . .......+. -++++++.|+.+ ..|.+|
T Consensus 204 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~y 274 (301)
T 2vpj_A 204 LL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT---T--PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECY 274 (301)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS---S--CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEE
T ss_pred EE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC---C--cccceeEEE--ECCEEEEEcCcCCCcccccEEEE
Confidence 22 56788888765 46899999876322221111 0 111111222 266777777655 356777
Q ss_pred EcCCCc
Q psy6522 570 GLGGFK 575 (1407)
Q Consensus 570 dl~sg~ 575 (1407)
|+.+.+
T Consensus 275 d~~~~~ 280 (301)
T 2vpj_A 275 DPIIDS 280 (301)
T ss_dssp ETTTTE
T ss_pred cCCCCe
Confidence 776653
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.18 E-value=0.36 Score=54.21 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCCEEEEEE-CC-----CeEEEEeCCCCceEEE--EeccCCceEEEEeccCCCCCceEEEEEecC-----CceeEEeecc
Q psy6522 257 RNILLAAGT-VD-----KTIRIWNLQTLAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKL 323 (1407)
Q Consensus 257 Dg~lLaSgs-~D-----GtIrVWDl~tg~~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~D-----GtI~vWDl~t 323 (1407)
++.+++.|+ .+ ..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~~~~~~~~~~~~d~~~ 87 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL------HDRIYVIGGYDGRSRLSSVECLDYTA 87 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE------TTEEEEECCBCSSCBCCCEEEEETTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE------CCEEEEEcCCCCCccCceEEEEECCC
Confidence 344555655 22 3688888877653221 1111111122222 22677777765 3577777766
Q ss_pred cccc-ceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceE
Q psy6522 324 DIDI-SKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSI 397 (1407)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sI 397 (1407)
.... .......+ .......++.+ ++.+++.|+.+ ..+.+||+.. .....+..+.. ...-.++
T Consensus 88 ~~~~~W~~~~~~p--------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~p~-~r~~~~~ 155 (301)
T 2vpj_A 88 DEDGVWYSVAPMN--------VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI-DQWSMLGDMQT-AREGAGL 155 (301)
T ss_dssp CTTCCCEEECCCS--------SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT-TEEEEEEECSS-CCBSCEE
T ss_pred CCCCeeEECCCCC--------CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC-CeEEECCCCCC-CcccceE
Confidence 5310 11111111 11122223333 57777777643 3578888732 22222222211 1111122
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec--
Q psy6522 398 QWSHSHLRFVSGSRD-----GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-- 470 (1407)
Q Consensus 398 afSpdg~~LaSgs~D-----GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~-- 470 (1407)
+. .++.+++.|+.+ ..+.+||+.+..|..... .+. ......++.+ ++..++.++..
T Consensus 156 ~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-----~p~---------~r~~~~~~~~--~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 156 VV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP-----MAT---------KRSGAGVALL--NDHIYVVGGFDGT 218 (301)
T ss_dssp EE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC-----CSS---------CCBSCEEEEE--TTEEEEECCBCSS
T ss_pred EE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC-----CCc---------ccccceEEEE--CCEEEEEeCCCCC
Confidence 22 256677777654 458899999998876421 110 0111122222 45666666541
Q ss_pred --CCeEEEEECCCCceEEEEecCCCCe-EEEEEecCCCCEEEEEeCC-----CcEEEEECCCC
Q psy6522 471 --NFQIKIWDAFNGDLVQVLKGHTNEV-FVLESHPFDSRVLLSAGHD-----GLIIIWDILSS 525 (1407)
Q Consensus 471 --DG~I~IWDl~tg~~l~~l~gH~~~V-~sLafsP~dg~~LaSgs~D-----G~V~IWDi~sg 525 (1407)
...|.+||+.+.+-...-....... .+++.. ++.+++.||.+ ..|.+||+.+.
T Consensus 219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 1468999998765433211111111 122222 56788888766 35788888766
No 317
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.13 E-value=0.27 Score=58.52 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=102.7
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC----CCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc---------
Q psy6522 213 DKLGEVIVTGADDLLIKLWRARDGKLLATLRGC----SGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--------- 279 (1407)
Q Consensus 213 SpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH----~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~--------- 279 (1407)
..+|..|+.+- ++.|+.-++......+.+... -..|..+..||+|++||..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 44566666664 568888887755445555432 23688899999999999986 5688888886221
Q ss_pred ---eEEEEec------cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 280 ---PISVLVG------HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 280 ---~v~~l~~------H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
....+.- ....|..+.|+|.+. .+..|++-..|++|++||+........ ........ .........|.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~-fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNS-FGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSE-EESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccC-CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccc-cCCCcccceEE
Confidence 1223321 246799999999873 457899999999999999987432222 11111100 01122336789
Q ss_pred EEEECCCCceEEEee--CCceEEEEe
Q psy6522 351 CSSFSPGGLFLATGS--GDHHVRVYK 374 (1407)
Q Consensus 351 ~vafSpdg~~Lasgs--~DG~I~IwD 374 (1407)
+++|..++-.|.+.+ ..|.|+-..
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 999999888777755 777765543
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.11 E-value=0.014 Score=74.84 Aligned_cols=205 Identities=10% Similarity=-0.073 Sum_probs=114.7
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCC----CcEEEEEeCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEeCCCC
Q psy6522 205 SAVFCVLFDKLGEVIVTGA-DDLLIKLWRARD----GKLLATLRGCSGEISDIAIDNR-NILLAAGTVDKTIRIWNLQTL 278 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS-~DG~V~IWDl~t----g~~l~tl~gH~~~ItsLafSpD-g~lLaSgs~DGtIrVWDl~tg 278 (1407)
..+..|+|++.+..|+... ..+.|..+++.+ ......+...-.....|++.+. +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899998776666554 457899999875 2222222212234566888854 455555456788999998754
Q ss_pred ceEEEEeccCCceEEEEeccCCCCCceEEEEEe-cC-CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC
Q psy6522 279 APISVLVGHQGIITGVNFCPLEVNGFNYLASTS-TD-GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 279 ~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs-~D-GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
.....+.........|++.|.+ .+|+.+. .. +.|..+++..... ..+.. ..-.....|+|++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~----g~ly~td~~~~~~I~~~~~dG~~~--~~l~~----------~~l~~PnGlavd~ 549 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVH----GFMYWTDWGTPAKIKKGGLNGVDI--YSLVT----------ENIQWPNGITLDL 549 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSS----SCCEECCCSSSCCEEBCCSSSCCC--CEESC----------SSCSSCCCEEECT
T ss_pred ceEEEEeCCCCCcceEEEccCC----CcEEEcccCCCCeEEEEeCCCCCe--eEEEe----------CCCCCccEEEEec
Confidence 4333333223445788888754 3333333 22 5676666543311 11100 0113356799998
Q ss_pred CCceEEEe-eCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEE
Q psy6522 357 GGLFLATG-SGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRF 427 (1407)
Q Consensus 357 dg~~Lasg-s~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~ 427 (1407)
++..|+.+ +..+.|.++++++.. ...+............|++..+ .++++....+.|..++..+++...
T Consensus 550 ~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 550 LSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp TTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEE
T ss_pred cCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceE
Confidence 76555544 556789999985322 2222111112233456666554 355555667889888877665443
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.86 E-value=0.32 Score=54.76 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=75.7
Q ss_pred CCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC-----eEEEEEccCCceE
Q psy6522 357 GGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCSQWR 426 (1407)
Q Consensus 357 dg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG-----tI~IWDl~t~~~~ 426 (1407)
++.+++.|+.+ ..+.+||+.. .....+..+...... .+++. -++.+++.|+.++ .+.+||+.+.+|.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVK-DQWTSVANMRDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTT-TEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCC-CceeeCCCCCccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 67777777754 3577888732 222222111111111 12222 2566777777553 5788999998887
Q ss_pred EeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec------CCeEEEEECCCCceEEEEecCCC-CeEEEE
Q psy6522 427 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF------NFQIKIWDAFNGDLVQVLKGHTN-EVFVLE 499 (1407)
Q Consensus 427 ~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~------DG~I~IWDl~tg~~l~~l~gH~~-~V~sLa 499 (1407)
.... .+. ......++.+ +++.++.++.. -..+.+||..+.+-...-..... .-.+++
T Consensus 138 ~~~~-----~p~---------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 201 (302)
T 2xn4_A 138 HVAP-----MNT---------RRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG 201 (302)
T ss_dssp EECC-----CSS---------CCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ecCC-----CCC---------cccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE
Confidence 6421 110 0111122222 45555555431 23588999887653332111111 111222
Q ss_pred EecCCCCEEEEEeCCC-----cEEEEECCCC
Q psy6522 500 SHPFDSRVLLSAGHDG-----LIIIWDILSS 525 (1407)
Q Consensus 500 fsP~dg~~LaSgs~DG-----~V~IWDi~sg 525 (1407)
.. ++.+++.||.++ .+.+||+.+.
T Consensus 202 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 202 VL--NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 22 567888887653 6889998776
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.84 E-value=4 Score=47.63 Aligned_cols=187 Identities=11% Similarity=0.082 Sum_probs=99.3
Q ss_pred cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC--CCc--eEEEeeC--CceEEEEeccCCCCC-cee
Q psy6522 312 TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP--GGL--FLATGSG--DHHVRVYKMDGVDSP-LGI 384 (1407)
Q Consensus 312 ~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp--dg~--~Lasgs~--DG~I~IwDl~~~~~~-~~i 384 (1407)
.+|.|.++|+.+............. .+.........+.+.+ ++. ++++-.. +..|.+|+++..... ..+
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~----~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~ 156 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGN----TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL 156 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECS----SCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCC----CCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE
Confidence 6889999998743211111110000 0111123445566544 343 4444333 568889888543322 222
Q ss_pred EEEeec-CCCcceEEEcCCCCEEEEEeC-----------------CCeEEEEEccCCceEEeeeccCcCCCCCccccccc
Q psy6522 385 LEVEEH-SDKVDSIQWSHSHLRFVSGSR-----------------DGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET 446 (1407)
Q Consensus 385 ~~l~~h-~~~V~sIafSpdg~~LaSgs~-----------------DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~ 446 (1407)
..+.+. -...+.+.+.++|.++++... .|.|..+|. ++.... .
T Consensus 157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~-----------------~ 217 (355)
T 3sre_A 157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVV-----------------A 217 (355)
T ss_dssp EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEE-----------------E
T ss_pred eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEe-----------------e
Confidence 223222 234678899999987666541 123333332 221111 1
Q ss_pred cccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-Cce--EEEEecCCCCeEEEEEecCCCCEEEEEeCC-CcEEEEEC
Q psy6522 447 NKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDL--VQVLKGHTNEVFVLESHPFDSRVLLSAGHD-GLIIIWDI 522 (1407)
Q Consensus 447 ~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t-g~~--l~~l~gH~~~V~sLafsP~dg~~LaSgs~D-G~V~IWDi 522 (1407)
..-...+.++|+||+++|+++....+.|..|++.. +.+ ...+ ...+..-.+++.+.+|++.+++..+ +.|..|+-
T Consensus 218 ~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 218 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 12234678999999999999887688999999863 433 2233 2234566777776227777766544 34444443
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.72 E-value=0.38 Score=54.27 Aligned_cols=190 Identities=11% Similarity=0.066 Sum_probs=94.7
Q ss_pred CCceEEEeeCC----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC------CeEEEEEccCCceE
Q psy6522 357 GGLFLATGSGD----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------GTALIWYYKCSQWR 426 (1407)
Q Consensus 357 dg~~Lasgs~D----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D------GtI~IWDl~t~~~~ 426 (1407)
++.+++.|+.+ ..+.+||+.. .....+..+...... .+++ .-++.+++.|+.+ ..+.+||+.+..|.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~-~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVK-DSWYSKLGPPTPRDS-LAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTT-TEEEEEECCSSCCBS-CEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCC-CeEEECCCCCccccc-eeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 56777777754 5678888732 222222211111111 1222 2256677777755 45899999999887
Q ss_pred EeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec--------CCeEEEEECCCCceEEEEecCCCC-eEE
Q psy6522 427 FIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF--------NFQIKIWDAFNGDLVQVLKGHTNE-VFV 497 (1407)
Q Consensus 427 ~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~--------DG~I~IWDl~tg~~l~~l~gH~~~-V~s 497 (1407)
.... .+. ......++.+ +++.++.++.. -..+.+||..+.+-...-...... -.+
T Consensus 132 ~~~~-----~p~---------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 195 (306)
T 3ii7_A 132 TKPS-----MLT---------QRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG 195 (306)
T ss_dssp EECC-----CSS---------CCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred eCCC-----CcC---------CcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcce
Confidence 6421 110 0111112222 55555555531 235889998876533221111111 112
Q ss_pred EEEecCCCCEEEEEeCC-----CcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCC-----CeEE
Q psy6522 498 LESHPFDSRVLLSAGHD-----GLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSY-----GHLL 567 (1407)
Q Consensus 498 LafsP~dg~~LaSgs~D-----G~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~D-----G~I~ 567 (1407)
++.. ++.+++.||.+ ..|.+||+.+.+-..+..+. ........+.+ ++.++++|+.+ ..+.
T Consensus 196 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-----~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~ 266 (306)
T 3ii7_A 196 LVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-----WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHIL 266 (306)
T ss_dssp EEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-----CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEE
T ss_pred EEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-----CCccceeEEEE--CCEEEEEeCcCCCeeeeeEE
Confidence 2222 56788887764 36889998876222221111 01111222222 66777777643 4566
Q ss_pred EEEcCCC
Q psy6522 568 VYGLGGF 574 (1407)
Q Consensus 568 Iwdl~sg 574 (1407)
+||+.+.
T Consensus 267 ~yd~~~~ 273 (306)
T 3ii7_A 267 EYNTETD 273 (306)
T ss_dssp EEETTTT
T ss_pred EEcCCCC
Confidence 7776654
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.47 E-value=0.54 Score=52.95 Aligned_cols=191 Identities=8% Similarity=-0.008 Sum_probs=97.4
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC------CeEEEEeCCCCceEE
Q psy6522 215 LGEVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD------KTIRIWNLQTLAPIS 282 (1407)
Q Consensus 215 dG~~LaTGS~D----G~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~D------GtIrVWDl~tg~~v~ 282 (1407)
++.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56677777754 5788999988754332 2211111222222 67777777755 468899988765433
Q ss_pred EEecc--CCceEEEEeccCCCCCceEEEEEecC---------CceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 283 VLVGH--QGIITGVNFCPLEVNGFNYLASTSTD---------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 283 ~l~~H--~~~VtsLafspd~~~~~~~LaSgs~D---------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
.-... ...-..+.+ + +.+++.|+.+ ..+.+||+.+..-.. ....+ .......+
T Consensus 133 ~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~--~~~~p--------~~r~~~~~ 196 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--N----GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE--LCPMI--------EARKNHGL 196 (306)
T ss_dssp ECCCSSCCBSCEEEEE--T----TEEEEECCEESCTTTCEECCCEEEEETTTTEEEE--ECCCS--------SCCBSCEE
T ss_pred CCCCcCCcceeEEEEE--C----CEEEEECCCCCCCCcccccceEEEeCCCCCeEEE--CCCcc--------chhhcceE
Confidence 21111 111112222 1 2666666642 346677776652111 11111 11111222
Q ss_pred EEECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC-----CeEEEEEcc
Q psy6522 352 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 421 (1407)
Q Consensus 352 vafSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D-----GtI~IWDl~ 421 (1407)
+.+ ++.+++.|+.+ ..+.+||+.. .....+..+........++.+ ++.+++.|+.+ ..+.+||+.
T Consensus 197 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 197 VFV--KDKIFAVGGQNGLGGLDNVEYYDIKL-NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp EEE--TTEEEEECCEETTEEBCCEEEEETTT-TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCCCceEEEeeCCC-CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 333 56777777653 3578888743 222222111111111222222 56677778754 568999999
Q ss_pred CCceEEe
Q psy6522 422 CSQWRFI 428 (1407)
Q Consensus 422 t~~~~~~ 428 (1407)
+.+|...
T Consensus 272 ~~~W~~~ 278 (306)
T 3ii7_A 272 TDKWVAN 278 (306)
T ss_dssp TTEEEEE
T ss_pred CCeEEeC
Confidence 9888764
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.44 E-value=5.3 Score=46.31 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=43.2
Q ss_pred CCeEEEEEec------CCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe-CCCe
Q psy6522 493 NEVFVLESHP------FDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD-SYGH 565 (1407)
Q Consensus 493 ~~V~sLafsP------~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs-~DG~ 565 (1407)
..+..++|.. .++.++++.-..+.|...++..+ ..... ..++. .....+.++++.|||.++++.+ .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~--~~~~~-~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD--KVTED-GRILT-DRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT--EEEEE-EEESG-GGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC--eEeee-EEccc-CCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 3566777764 14667777667788888887754 22221 11121 1235789999999999766654 3454
Q ss_pred EE
Q psy6522 566 LL 567 (1407)
Q Consensus 566 I~ 567 (1407)
|+
T Consensus 347 I~ 348 (353)
T 2g8s_A 347 LL 348 (353)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.40 E-value=0.7 Score=62.33 Aligned_cols=272 Identities=11% Similarity=0.086 Sum_probs=152.9
Q ss_pred CCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCc
Q psy6522 225 DLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGF 304 (1407)
Q Consensus 225 DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~ 304 (1407)
...|.|.|+.++..+..-. -.--+.-.+|..+.||.-. ..++.|+|+.+...+..+.-.. .|.-=.|...
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~----- 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL----- 116 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCC-----
Confidence 3478888988765442211 0111223577777777665 6799999999888777665444 4656666653
Q ss_pred eEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-------CCceEEEEeccC
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-------GDHHVRVYKMDG 377 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-------~DG~I~IwDl~~ 377 (1407)
+.|+..+. ..|..|++.........+...+ .+ ...+|..-..+++.++++..+ -.|.+.+|.+..
T Consensus 117 ~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~-----~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 117 NTVALVTD-NAVYHWSMEGESQPVKMFDRHS-----SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred CeeEEEcC-CeEEEeccCCCCccHHHHhcch-----hc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 45555543 4699999965322222211111 11 136788888888998877543 357889998843
Q ss_pred CCCCceeEEEeecCCCcceEEEcCC---CCEEEEEeC---CCeEEEEEccCC-ceEEeeeccCcCCCCCccccccccccc
Q psy6522 378 VDSPLGILEVEEHSDKVDSIQWSHS---HLRFVSGSR---DGTALIWYYKCS-QWRFIRLDMNTCLPHTKETSDETNKKI 450 (1407)
Q Consensus 378 ~~~~~~i~~l~~h~~~V~sIafSpd---g~~LaSgs~---DGtI~IWDl~t~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 450 (1407)
. ....+.+|.+....+.+..+ ..+|+.+.. .+.+.|-++... .-.. ..... .............
T Consensus 189 ~----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk--~~~~~~~~~~~~D 259 (1630)
T 1xi4_A 189 K----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKK--AVDVFFPPEAQND 259 (1630)
T ss_pred c----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccc--cccccCCcccccC
Confidence 2 12335666655544443211 123333322 367888877543 1000 00000 0000001111223
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 451 ~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
-..++..++....++..+. -|.|+++|+.||.++..-+-....|+..+.+. ...=++.....|.|.--.+...
T Consensus 260 fpv~~~vs~k~g~iy~itk-~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~-~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cceEEEeccccCEEEEEec-CceEEEEecccchhhhhccccCCceEEeccCC-CCCceEEEcCCceEEEEEEccc
Confidence 3445677777777887777 89999999999999877665566666665554 2223344445666655555443
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.28 E-value=1.9 Score=50.40 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=101.3
Q ss_pred EEEEEcCCCCEEEEE------------ECCCeEEEEEcCC--CcEE-EEEeC-----CCCCeEEEEEcC--CCC-EEEEE
Q psy6522 208 FCVLFDKLGEVIVTG------------ADDLLIKLWRARD--GKLL-ATLRG-----CSGEISDIAIDN--RNI-LLAAG 264 (1407)
Q Consensus 208 ~~vafSpdG~~LaTG------------S~DG~V~IWDl~t--g~~l-~tl~g-----H~~~ItsLafSp--Dg~-lLaSg 264 (1407)
-.+++.|+|..++++ ..+|.|.++|..+ ++.. ..+.+ ..-....|.+.+ ++. +|+.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 355667776443333 1689999999874 3321 12333 223566777755 454 34444
Q ss_pred -EC--CCeEEEEeCCCCce----EEEEecc-CCceEEEEeccCCCCCceEEEEEec---C------------CceeEEee
Q psy6522 265 -TV--DKTIRIWNLQTLAP----ISVLVGH-QGIITGVNFCPLEVNGFNYLASTST---D------------GCIGFWKY 321 (1407)
Q Consensus 265 -s~--DGtIrVWDl~tg~~----v~~l~~H-~~~VtsLafspd~~~~~~~LaSgs~---D------------GtI~vWDl 321 (1407)
.. +.+|.||++..... +..+.+. -...+.+.+.+++ .++++... | ..-.+|.+
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G----~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE----HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT----EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC----CEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 33 46788888765322 2233322 2356888888865 55555431 1 11122222
Q ss_pred ccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee-CCceEEEEeccCCCCCceeEEEeecCCCcceEEEc
Q psy6522 322 KLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS-GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 322 ~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs-~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafS 400 (1407)
..+. .... ...-...+.++|+||++.|+++. ..+.|..|++...........+ ...+....++++
T Consensus 209 d~~~-~~~~------------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD 274 (355)
T 3sre_A 209 SPND-VRVV------------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVD 274 (355)
T ss_dssp CTTC-CEEE------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEEC
T ss_pred ECCe-EEEe------------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEe
Confidence 2210 0100 01114468899999998777664 5688999998543322222223 234566788888
Q ss_pred C-CCCEEEEEeCC
Q psy6522 401 H-SHLRFVSGSRD 412 (1407)
Q Consensus 401 p-dg~~LaSgs~D 412 (1407)
+ +|.+.+++..+
T Consensus 275 ~e~G~lwva~~~~ 287 (355)
T 3sre_A 275 PVTGDLWVGCHPN 287 (355)
T ss_dssp TTTCCEEEEEESC
T ss_pred CCCCcEEEEecCC
Confidence 8 58876656543
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.21 E-value=0.52 Score=56.04 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCc------------eEEEEec------CCCCeEEEEEecC--CCCEEEE
Q psy6522 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGD------------LVQVLKG------HTNEVFVLESHPF--DSRVLLS 510 (1407)
Q Consensus 451 ~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~------------~l~~l~g------H~~~V~sLafsP~--dg~~LaS 510 (1407)
.|..+..+|+|.+|+..+ +..|.|..+..+. ..+.+.- ....|..+.|||. .+..|++
T Consensus 67 ~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCCEEEEec--CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 456799999999999987 6789999887321 1223332 2467999999994 3458999
Q ss_pred EeCCCcEEEEECCCCCccceeeeeeee----cCCCCCceeEEEECCCCCEEEEEe--CCCeEEEE
Q psy6522 511 AGHDGLIIIWDILSSKQRGYKWFHNIV----EGQGEGALFDGKWSPDGTTCALTD--SYGHLLVY 569 (1407)
Q Consensus 511 gs~DG~V~IWDi~sgk~~~l~~~~~~~----~g~~~~~I~slafSpDG~~LAsgs--~DG~I~Iw 569 (1407)
-..|+.|++||+......+. .+.... .......|.+++|..+|-.|.+.+ ..|.|+-.
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999987432333 232111 011225788999999887777755 66776543
No 327
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.16 E-value=0.61 Score=52.78 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=93.0
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEEC----C-----CeEEEEeCCCCc
Q psy6522 215 LGEVIVTGADD----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTV----D-----KTIRIWNLQTLA 279 (1407)
Q Consensus 215 dG~~LaTGS~D----G~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~----D-----GtIrVWDl~tg~ 279 (1407)
++.+++.|+.+ ..+.+||..+.+-... +......-. ++ .-++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45666666632 3688899877653321 111111111 22 225667777765 2 468888987765
Q ss_pred eEEE--EeccCCceEEEEeccCCCCCceEEEEEecCC-----ceeEEeeccccccceeeeccccccccccCCCCcceEEE
Q psy6522 280 PISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDG-----CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 352 (1407)
Q Consensus 280 ~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~DG-----tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~v 352 (1407)
-... +.........+.+ + +.+++.|+.++ .+.+||+.+..-.. ....+ .......++
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p--------~~r~~~~~~ 165 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--D----GHIYAVGGSHGCIHHNSVERYEPERDEWHL--VAPML--------TRRIGVGVA 165 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--T----TEEEEECCEETTEECCCEEEEETTTTEEEE--CCCCS--------SCCBSCEEE
T ss_pred EeECCCCCcCccccEEEEE--C----CEEEEEcCCCCCcccccEEEECCCCCeEeE--CCCCC--------ccccceEEE
Confidence 3221 1111111122222 2 26777766443 46677766542111 11101 111122233
Q ss_pred EECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC-----CeEEEEEccC
Q psy6522 353 SFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYKC 422 (1407)
Q Consensus 353 afSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D-----GtI~IWDl~t 422 (1407)
.+ ++.+++.|+.+ ..+.+||+... ....+..+.... .-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 166 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 166 VL--NRLLYAVGGFDGTNRLNSAECYYPERN-EWRMITAMNTIR-SGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp EE--TTEEEEECCBCSSCBCCCEEEEETTTT-EEEECCCCSSCC-BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEEeCCCCCCcCceEEEEeCCCC-eEeeCCCCCCcc-ccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 33 66777777654 45788887422 211111111111 11122222 56677777654 5689999999
Q ss_pred CceEEe
Q psy6522 423 SQWRFI 428 (1407)
Q Consensus 423 ~~~~~~ 428 (1407)
.+|..+
T Consensus 241 ~~W~~~ 246 (308)
T 1zgk_A 241 ETWTFV 246 (308)
T ss_dssp TEEEEC
T ss_pred CcEEEC
Confidence 988764
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.09 E-value=0.77 Score=51.55 Aligned_cols=191 Identities=14% Similarity=0.179 Sum_probs=95.7
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEeCCCCceEE
Q psy6522 215 LGEVIVTGADD-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVDK-----TIRIWNLQTLAPIS 282 (1407)
Q Consensus 215 dG~~LaTGS~D-----G~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~DG-----tIrVWDl~tg~~v~ 282 (1407)
++.+++.|+.+ ..+.+||..+.+-... +......-.++. -++++++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 56677777654 3588999887653322 111111112222 2567777777553 57788887765333
Q ss_pred EE--eccCCceEEEEeccCCCCCceEEEEEecC-------CceeEEeeccccccceeeeccccccccccCCCCcceEEEE
Q psy6522 283 VL--VGHQGIITGVNFCPLEVNGFNYLASTSTD-------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSS 353 (1407)
Q Consensus 283 ~l--~~H~~~VtsLafspd~~~~~~~LaSgs~D-------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~va 353 (1407)
.- .........+.+ ++.+++.|+.+ ..+.+||+.+..-... ...+ .......++.
T Consensus 139 ~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p--------~~r~~~~~~~ 202 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV------GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI--AEMS--------TRRSGAGVGV 202 (302)
T ss_dssp ECCCSSCCBSCEEEEE------TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE--CCCS--------SCCBSCEEEE
T ss_pred cCCCCCcccCceEEEE------CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC--CCCc--------cccccccEEE
Confidence 21 111111122222 12667776643 2466777765421111 1111 1111122333
Q ss_pred ECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC-----eEEEEEccCC
Q psy6522 354 FSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCS 423 (1407)
Q Consensus 354 fSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG-----tI~IWDl~t~ 423 (1407)
+ ++.+++.|+.+ ..+.+||+.. .....+..+.... .-.+++ ..++.+++.|+.++ .+.+||+.+.
T Consensus 203 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r-~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 203 L--NNLLYAVGGHDGPLVRKSVEVYDPTT-NAWRQVADMNMCR-RNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E--TTEEEEECCBSSSSBCCCEEEEETTT-TEEEEECCCSSCC-BSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E--CCEEEEECCCCCCcccceEEEEeCCC-CCEeeCCCCCCcc-ccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 3 57777887754 3688888842 2222221111111 111222 23566777777653 4899999999
Q ss_pred ceEEe
Q psy6522 424 QWRFI 428 (1407)
Q Consensus 424 ~~~~~ 428 (1407)
+|...
T Consensus 278 ~W~~~ 282 (302)
T 2xn4_A 278 KWTVV 282 (302)
T ss_dssp EEEEC
T ss_pred eEEEC
Confidence 88763
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.02 E-value=8.2 Score=46.07 Aligned_cols=262 Identities=8% Similarity=0.057 Sum_probs=150.7
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
..|.|.|+.++..+..-.-. --+.-.+|.. ..|+.-. ..++.+||+.+...........+
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~----~iiALra-g~~lQiFnle~K~klks~~~~e~------------ 107 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMTDD------------ 107 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC---CSEEEECSSS----SCEEEEE-TTEEEEEETTTTEEEEEEECSSC------------
T ss_pred CeEEEEECCCCCcceecccc---cceeeeCCCC----cEEEEec-CCeEEEEchHHhhhhcceecCCC------------
Confidence 47888898876554222111 1234456654 5555554 67899999998755555444332
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec--CCCcceEEEcCCCCEEEEEe-------CCCeEEEE
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGS-------RDGTALIW 418 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h--~~~V~sIafSpdg~~LaSgs-------~DGtI~IW 418 (1407)
|.--.|-.+. .|+..+ +..|+.|++.+...+.++....+. ...|..-..+++.++++..+ -.|.+.+|
T Consensus 108 -VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 108 -VTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp -CCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -ceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 2223333222 344333 357999999765555555443221 34566677788888776543 23678888
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC--CCEEEEEEe---cCCeEEEEECCCC---c-----e-
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS--DRWVITAIN---FNFQIKIWDAFNG---D-----L- 484 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd--g~~Lasgs~---~DG~I~IWDl~tg---~-----~- 484 (1407)
....+....+ .+|......+.+..+ ...|++-.. ..+.++|.++... . .
T Consensus 185 S~er~~sQ~i-----------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~ 247 (494)
T 1bpo_A 185 SVDRKVSQPI-----------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA 247 (494)
T ss_dssp ESTTCCEEEE-----------------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEE
T ss_pred eccccccchh-----------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcccee
Confidence 7776543221 223333322222211 111222222 1378999988532 1 1
Q ss_pred EEEEe---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe
Q psy6522 485 VQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 561 (1407)
Q Consensus 485 l~~l~---gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs 561 (1407)
+..+- .-.+--.++..++ ...++...+.-|.|.++|+.++ .++..-. .....|+..+-+....-+++..
T Consensus 248 vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTg--t~i~~nr-----Is~~~iF~t~~~~~~~Gi~~Vn 319 (494)
T 1bpo_A 248 VDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG--TCIYMNR-----ISGETIFVTAPHEATAGIIGVN 319 (494)
T ss_dssp EECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC--CEEEEEE-----CCSSCEEEEEEETTTTEEEEEE
T ss_pred eeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccc--eeeeeec-----ccCCceEEecccCCCCcEEEEc
Confidence 11111 1133446788888 7778888999999999999999 5555433 2345676666666666666666
Q ss_pred CCCeEEEEEcCCCccc
Q psy6522 562 SYGHLLVYGLGGFKRP 577 (1407)
Q Consensus 562 ~DG~I~Iwdl~sg~~~ 577 (1407)
..|.|.-..++....+
T Consensus 320 r~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 320 RKGQVLSVCVEEENII 335 (494)
T ss_dssp TTCEEEEEEECTTTHH
T ss_pred cCceEEEEEEccccch
Confidence 7788877777665544
No 330
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.90 E-value=7.2 Score=44.87 Aligned_cols=263 Identities=8% Similarity=0.064 Sum_probs=153.5
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
..|.|.|+.++..+..-.-. --+.-.+|.. ..|+.-. ..++.+||+.+...+...... .
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~----~ViALra-g~~LQiFnletK~klks~~~~-------------e 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------D 107 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSS----SEEEEEE-TTEEEEEETTTTEEEEEEECS-------------S
T ss_pred CEEEEEECCCCCCccccccc---cceeeeCCCc----cEEEEec-CCeEEEechHHhhhhcceecC-------------C
Confidence 47888899876554222111 1233457754 6666655 678999999988555544433 3
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeec--CCCcceEEEcCCCCEEEEEe-------CCCeEEEE
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEH--SDKVDSIQWSHSHLRFVSGS-------RDGTALIW 418 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h--~~~V~sIafSpdg~~LaSgs-------~DGtI~IW 418 (1407)
.|.--.|-.+. .|+..+ +..|+.|++.+...+.++...... ...|..-..+++.++++..+ -.|.+.+|
T Consensus 108 ~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 108 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp CEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEE
Confidence 34444555333 343333 347999999765555555443221 34566667788888766543 23678888
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEECC--CCCEEE-EEEe--cCCeEEEEECCCC---c------e
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDA--SDRWVI-TAIN--FNFQIKIWDAFNG---D------L 484 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSp--dg~~La-sgs~--~DG~I~IWDl~tg---~------~ 484 (1407)
..+.+....+ .+|......+.+.. ....|+ .+.. ..+.++|.++... . .
T Consensus 186 S~er~~sQ~i-----------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~ 248 (365)
T 2xzh_A 186 SVDRKVSQPI-----------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA 248 (365)
T ss_dssp ETTTTEEEEE-----------------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEE
T ss_pred eeccccccee-----------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccccc
Confidence 7776543221 12222222221111 111122 2221 1258899987432 1 1
Q ss_pred EEEEec---CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe
Q psy6522 485 VQVLKG---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 561 (1407)
Q Consensus 485 l~~l~g---H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs 561 (1407)
+..+-. -.+--.++..++ ...++...+.-|.|.++|+.++ .++..-. .....|+..+-+....-+++..
T Consensus 249 vdi~fppea~~DFPVamqvs~-kygviyviTK~G~ihlyDleTg--t~i~~nr-----IS~d~iF~ta~~~~~~Gi~~Vn 320 (365)
T 2xzh_A 249 VDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG--TCIYMNR-----ISGETIFVTAPHEATAGIIGVN 320 (365)
T ss_dssp EEECCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTC--CEEEEEE-----CCSSCEEEEEEEGGGTEEEEEE
T ss_pred ceeeCCccccCCceEEEEecc-cCCEEEEEeCCcEEEEEEcccC--cEEEEec-----cCCCceEEecccCCCCcEEEEc
Confidence 111111 133446778888 7778888899999999999999 6655433 2345677767666666666677
Q ss_pred CCCeEEEEEcCCCcccc
Q psy6522 562 SYGHLLVYGLGGFKRPQ 578 (1407)
Q Consensus 562 ~DG~I~Iwdl~sg~~~~ 578 (1407)
..|.|.-..++....+.
T Consensus 321 r~GqVl~v~v~~~~ivp 337 (365)
T 2xzh_A 321 RKGQVLSVCVEEENIIP 337 (365)
T ss_dssp TTCEEEEEEECTTTHHH
T ss_pred CCCEEEEEEECcccEeh
Confidence 88999888888776543
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.84 E-value=1.3 Score=50.22 Aligned_cols=187 Identities=8% Similarity=-0.019 Sum_probs=92.4
Q ss_pred EEEEECCCeEEEEEcCCCcEEE-EEeCCCCCeEEEEEcCCCCEEEEEEC-----C------CeEEEEeCCCCceEEE--E
Q psy6522 219 IVTGADDLLIKLWRARDGKLLA-TLRGCSGEISDIAIDNRNILLAAGTV-----D------KTIRIWNLQTLAPISV--L 284 (1407)
Q Consensus 219 LaTGS~DG~V~IWDl~tg~~l~-tl~gH~~~ItsLafSpDg~lLaSgs~-----D------GtIrVWDl~tg~~v~~--l 284 (1407)
++.|+ ..+.+||..+++-.. .+..........+...++.+++.|+. . ..+.+||+.+.+-... +
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44454 578999998876432 22222223333344567888888873 1 1377888877653221 1
Q ss_pred eccCCceEEEEeccCCCCCceEEEEEecC--------CceeEEeeccccccceeeeccccccccccCCCCcceEEEEECC
Q psy6522 285 VGHQGIITGVNFCPLEVNGFNYLASTSTD--------GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSP 356 (1407)
Q Consensus 285 ~~H~~~VtsLafspd~~~~~~~LaSgs~D--------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSp 356 (1407)
.........+.+ ++.+++.|+.+ ..+.+||+.+..- ......+ .......++. -
T Consensus 86 p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p--------~~r~~~~~~~--~ 147 (315)
T 4asc_A 86 PSPRCLFGLGEA------LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESDPLP--------YVVYGHTVLS--H 147 (315)
T ss_dssp SSCEESCEEEEE------TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--EECCCCS--------SCCBSCEEEE--E
T ss_pred CcchhceeEEEE------CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--eECCCCC--------CcccceeEEE--E
Confidence 100011112222 12667777642 3466777665421 1111111 1111122222 3
Q ss_pred CCceEEEeeC-C-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC-----eEEEEEccCCce
Q psy6522 357 GGLFLATGSG-D-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG-----TALIWYYKCSQW 425 (1407)
Q Consensus 357 dg~~Lasgs~-D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG-----tI~IWDl~t~~~ 425 (1407)
++.+++.|+. + ..+.+||+... ....+..+... ..-.+++ .-++.+++.|+.++ .+.+||+.+.+|
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~-r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKF-EWKELAPMQTA-RSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTT-EEEECCCCSSC-CBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCC-eEEECCCCCCc-hhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 5667777765 2 35888887422 22222111111 1111222 22566777777654 588999999988
Q ss_pred EEe
Q psy6522 426 RFI 428 (1407)
Q Consensus 426 ~~~ 428 (1407)
...
T Consensus 225 ~~~ 227 (315)
T 4asc_A 225 APF 227 (315)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.81 E-value=8.2 Score=47.36 Aligned_cols=303 Identities=12% Similarity=0.097 Sum_probs=161.7
Q ss_pred EEEEECCCeEEEEEcCCCcEEEEEeCC-------------------------CCCeE--EEEEc---CCCCEEEEEEC-C
Q psy6522 219 IVTGADDLLIKLWRARDGKLLATLRGC-------------------------SGEIS--DIAID---NRNILLAAGTV-D 267 (1407)
Q Consensus 219 LaTGS~DG~V~IWDl~tg~~l~tl~gH-------------------------~~~It--sLafS---pDg~lLaSgs~-D 267 (1407)
+.+|+..|.|+|+-+.+++.+..+.-. .+... .+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 567788889999998888888776411 01111 23332 36788988874 5
Q ss_pred CeEEEEeCCCCceEEEEe-ccCCceEEEEeccCCCCCceEEEEEecC-------CceeEEeeccccccc--eeeeccc--
Q psy6522 268 KTIRIWNLQTLAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTD-------GCIGFWKYKLDIDIS--KTVFHEP-- 335 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~-~H~~~VtsLafspd~~~~~~~LaSgs~D-------GtI~vWDl~t~~~~~--~~~~~~~-- 335 (1407)
..|...++...++-..+. .....+.++.|.... +..++++++.. |.. ..+....... .......
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p--~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~ 228 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP--HTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETME 228 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS--BCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCS
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccC--CccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccE
Confidence 678888998888776665 345678888886211 23677777643 221 1001110000 0000000
Q ss_pred cccccccCCCCcceEEEEECCCCceEEEeeCC---------------ceEEEEecc--------CC-C--C--Cce----
Q psy6522 336 VMFNERIRPGNAHILCSSFSPGGLFLATGSGD---------------HHVRVYKMD--------GV-D--S--PLG---- 383 (1407)
Q Consensus 336 ~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~D---------------G~I~IwDl~--------~~-~--~--~~~---- 383 (1407)
+.+.... .+....+...++|.+.++.+.+ ..+.++++. +. . . ...
T Consensus 229 v~~Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 229 MAFQVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp EEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred EEEEEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 0000000 0122234445666666554421 135555542 00 0 0 011
Q ss_pred ---------eEEEeecCCCcceEEEcCCCCEEEEEe-CCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEE
Q psy6522 384 ---------ILEVEEHSDKVDSIQWSHSHLRFVSGS-RDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVT 453 (1407)
Q Consensus 384 ---------i~~l~~h~~~V~sIafSpdg~~LaSgs-~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Vt 453 (1407)
+..+-.-......+.++|||+++++++ -+.++.++|+....-.. . .....................
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~---~-~k~~~~~~~~~ae~e~GlGPl 381 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF---A-GKLADPRDVIVGEPELGLGPL 381 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH---T-TCCSCGGGGEEECCBCCSCEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh---h-ccccCcccceEeeccCCCccc
Confidence 111112223456788999999887765 67889999987422100 0 000000011111223456677
Q ss_pred EEEECCCCCEEEEEEecCCeEEEEECCCC----------ceEEEEecCCCCeEEEE-----EecCCCCEEEEEeC---CC
Q psy6522 454 MVAWDASDRWVITAINFNFQIKIWDAFNG----------DLVQVLKGHTNEVFVLE-----SHPFDSRVLLSAGH---DG 515 (1407)
Q Consensus 454 slafSpdg~~Lasgs~~DG~I~IWDl~tg----------~~l~~l~gH~~~V~sLa-----fsP~dg~~LaSgs~---DG 515 (1407)
..+|+++| ..+++...|..|..|++... ..+..+.-|-.+-...+ -.+ ++++|++... |.
T Consensus 382 Ht~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~-dGk~lv~lnK~skdr 459 (638)
T 3sbq_A 382 HTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEA-DGKWLVALSKFSKDR 459 (638)
T ss_dssp EEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CSCEEEEEESCCTTS
T ss_pred EEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCC-CccEEEEeccccccc
Confidence 89999999 77777766999999998643 45666666654332221 135 8889998853 43
Q ss_pred c----------EEEEECCCCCccceeeee
Q psy6522 516 L----------IIIWDILSSKQRGYKWFH 534 (1407)
Q Consensus 516 ~----------V~IWDi~sgk~~~l~~~~ 534 (1407)
. -.+.||...+.+.+....
T Consensus 460 fl~vGpl~pen~QlidIsGdkM~lv~D~P 488 (638)
T 3sbq_A 460 FLPVGPLHPENDQLIDISGDEMKLVHDGP 488 (638)
T ss_dssp SCCCSSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred CcCCCCCCCCcceeEecCCCceEEEecCC
Confidence 2 477777666444444433
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.50 E-value=2 Score=46.81 Aligned_cols=155 Identities=10% Similarity=-0.041 Sum_probs=83.3
Q ss_pred CCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecC
Q psy6522 392 DKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFN 471 (1407)
Q Consensus 392 ~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~D 471 (1407)
..+..++|+|+|.+.++ .+|.+.-.+..+.....-. .........+- ....++.|.++|.+.++ . |
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~--------~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~-d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM--------GRAKKIGNGGW-NQFQFLFFDPNGYLYAV--S-K 106 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH--------HHCEEEECSCG-GGCSEEEECTTSCEEEE--E-T
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccccc--------ccccEeccccc-ccceEEEECCCCCEEEe--C-C
Confidence 47889999999986655 6776555544321100000 00000000011 11467999999988777 4 8
Q ss_pred CeEEEEECCCCce-------EEEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeee--eeeecCCCC
Q psy6522 472 FQIKIWDAFNGDL-------VQVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWF--HNIVEGQGE 542 (1407)
Q Consensus 472 G~I~IWDl~tg~~-------l~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~--~~~~~g~~~ 542 (1407)
|.|+-++-.+... ...-.+--..+..|.+.| ++.+.+.. ||.++-+...+. .....+ ...+...+-
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~--~~~~wl~~~~~~g~~g~ 181 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVS--NQDNWLARATKIGQGGW 181 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSS--TTCCHHHHCEEEESSSG
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCC--CCcccccccceeccCCc
Confidence 9998888643211 111112224689999999 88766666 887654443322 111111 111111222
Q ss_pred CceeEEEECCCCCEEEEEeCCCeEE
Q psy6522 543 GALFDGKWSPDGTTCALTDSYGHLL 567 (1407)
Q Consensus 543 ~~I~slafSpDG~~LAsgs~DG~I~ 567 (1407)
....-+.|.++|.++++. +|.++
T Consensus 182 ~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 182 DTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp GGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ceEEEEEECCCCcEEEEe--CCeEE
Confidence 334456788888887777 56443
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.23 E-value=2 Score=48.46 Aligned_cols=196 Identities=10% Similarity=-0.014 Sum_probs=95.1
Q ss_pred EEEcCCCCEEEEEEC-----C------CeEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC--------C
Q psy6522 210 VLFDKLGEVIVTGAD-----D------LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD--------K 268 (1407)
Q Consensus 210 vafSpdG~~LaTGS~-----D------G~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~D--------G 268 (1407)
.+...++++++.|+. . ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ .
T Consensus 40 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 117 (315)
T 4asc_A 40 SLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLD 117 (315)
T ss_dssp EEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred EEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccc
Confidence 334457788888873 1 1277888887653221 1111111111222 56677777632 4
Q ss_pred eEEEEeCCCCceEEE--EeccCCceEEEEeccCCCCCceEEEEEec-C-----CceeEEeeccccccceeeecccccccc
Q psy6522 269 TIRIWNLQTLAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTST-D-----GCIGFWKYKLDIDISKTVFHEPVMFNE 340 (1407)
Q Consensus 269 tIrVWDl~tg~~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~-D-----GtI~vWDl~t~~~~~~~~~~~~~~~~~ 340 (1407)
.+.+||+.+.+-... +......-..+.+ ++.+++.|+. + ..+.+||+.+..-.. ....+
T Consensus 118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~p----- 184 (315)
T 4asc_A 118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSH------MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--LAPMQ----- 184 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE------TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE--CCCCS-----
T ss_pred eEEEECCCCCcEeECCCCCCcccceeEEEE------CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE--CCCCC-----
Confidence 588999887653221 1111111112222 2267777776 2 356777776552111 11111
Q ss_pred ccCCCCcceEEEEECCCCceEEEeeCCc-----eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC---
Q psy6522 341 RIRPGNAHILCSSFSPGGLFLATGSGDH-----HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD--- 412 (1407)
Q Consensus 341 ~~~~h~~~I~~vafSpdg~~Lasgs~DG-----~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D--- 412 (1407)
.......++.+ ++.+++.|+.++ .+.+||+.. .....+..+... ..-.+++. -++.+++.|+.+
T Consensus 185 ---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~-r~~~~~~~-~~~~l~v~GG~~~~~ 256 (315)
T 4asc_A 185 ---TARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD-NKWAPFEAFPQE-RSSLSLVS-LVGTLYAIGGFATLE 256 (315)
T ss_dssp ---SCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT-TEEEEECCCSSC-CBSCEEEE-ETTEEEEEEEEEEEE
T ss_pred ---CchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC-CeEEECCCCCCc-ccceeEEE-ECCEEEEECCccccC
Confidence 11112223333 667777777543 577888742 222222111111 11112222 255677777653
Q ss_pred -----------CeEEEEEccCCceEEe
Q psy6522 413 -----------GTALIWYYKCSQWRFI 428 (1407)
Q Consensus 413 -----------GtI~IWDl~t~~~~~~ 428 (1407)
..+.+||+.+.+|..+
T Consensus 257 ~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 257 TESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp CTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred cCCccccccccCcEEEecCCCChhhhh
Confidence 2477889998888765
No 335
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=94.11 E-value=0.034 Score=51.45 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=38.2
Q ss_pred hhhHHHHhcCChHHHHHHHHHHHHhcCCCCcccCCCCCcccchhhhhhccCCCCCCCcHHHHHHHh
Q psy6522 2 LLIIKYLEKGPCHEAAKVLTDLVEAKNLLPERYDWEGATHSQTLAEVASSHPNVTASFLPKICQRL 67 (1407)
Q Consensus 2 ~LI~r~L~~g~~~~Aa~~L~~El~~~~llp~r~d~~G~~~~~t~~~l~~~~~~i~~~~L~~l~q~l 67 (1407)
|||||||++.||..||-+|.+|..-.+.- ....+|+|..|..++|+.
T Consensus 10 ~LI~RYLqEsGf~hsAf~f~~Es~i~~~~-------------------~~~~~VppgaLVsllQKG 56 (90)
T 2xtc_A 10 FLVYRYLQESGFSHSAFTFGIESHISQSN-------------------INGTLVPPAALISILQKG 56 (90)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTGGGSC-------------------CCGGGSCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCCccc-------------------cccccCCcchHHHHHHHH
Confidence 89999999999999999999997644321 011369999999999985
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.03 E-value=1.3 Score=50.23 Aligned_cols=106 Identities=13% Similarity=0.262 Sum_probs=57.1
Q ss_pred CCCEEEEEeCC-------CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec----
Q psy6522 402 SHLRFVSGSRD-------GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF---- 470 (1407)
Q Consensus 402 dg~~LaSgs~D-------GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~---- 470 (1407)
++.+++.|+.+ ..+.+||+.+.+|..... .+. ....+ .++. .+++.++.++..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~-----~r~~~----~~~~--~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-----LPI-----KVYGH----NVIS--HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-----CSS-----CEESC----EEEE--ETTEEEEECCEESSSC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-----CCC-----ccccc----EEEE--ECCEEEEEcCCCCCCC
Confidence 56667777654 358889999988876421 110 00111 1222 356666665531
Q ss_pred -CCeEEEEECCCCceEEEEecCCC-CeEEEEEecCCCCEEEEEeCCC-----cEEEEECCCC
Q psy6522 471 -NFQIKIWDAFNGDLVQVLKGHTN-EVFVLESHPFDSRVLLSAGHDG-----LIIIWDILSS 525 (1407)
Q Consensus 471 -DG~I~IWDl~tg~~l~~l~gH~~-~V~sLafsP~dg~~LaSgs~DG-----~V~IWDi~sg 525 (1407)
-..+.+||..+.+-...-..... .-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 23589999887653322111111 11122222 567888887543 5778888776
No 337
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.91 E-value=1.6 Score=49.33 Aligned_cols=191 Identities=11% Similarity=0.048 Sum_probs=95.2
Q ss_pred CCCEEEEEEC----C-----CeEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEeCCCC
Q psy6522 215 LGEVIVTGAD----D-----LLIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-----KTIRIWNLQTL 278 (1407)
Q Consensus 215 dG~~LaTGS~----D-----G~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~D-----GtIrVWDl~tg 278 (1407)
++.+++.|+. + ..+.+||+.+.+-... +......-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666666665 2 4688899887653221 1111112222222 56777776643 46888998776
Q ss_pred ceEEE--EeccCCceEEEEeccCCCCCceEEEEEecC-----CceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 279 APISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTD-----GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 279 ~~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~D-----GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
+-... +......-..+.+ + +.+++.|+.+ ..+.+||+.+..-.. ....+ .......+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~--~----~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~~~~p--------~~r~~~~~ 211 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVL--N----RLLYAVGGFDGTNRLNSAECYYPERNEWRM--ITAMN--------TIRSGAGV 211 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE--T----TEEEEECCBCSSCBCCCEEEEETTTTEEEE--CCCCS--------SCCBSCEE
T ss_pred eEeECCCCCccccceEEEEE--C----CEEEEEeCCCCCCcCceEEEEeCCCCeEee--CCCCC--------CccccceE
Confidence 53322 1111111122222 2 2677777755 346777766542111 11101 11112223
Q ss_pred EEECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC-----CeEEEEEcc
Q psy6522 352 SSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD-----GTALIWYYK 421 (1407)
Q Consensus 352 vafSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D-----GtI~IWDl~ 421 (1407)
+.+ ++.+++.|+.+ ..+.+||+.. .....+..+..... -.+++. -++.+++.|+.+ ..+.+||+.
T Consensus 212 ~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 212 CVL--HNCIYAAGGYDGQDQLNSVERYDVET-ETWTFVAPMKHRRS-ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTT-TEEEECCCCSSCCB-SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEE--CCEEEEEeCCCCCCccceEEEEeCCC-CcEEECCCCCCCcc-ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 333 67777777654 4588888843 22222211111111 112222 256677777644 458899999
Q ss_pred CCceEEe
Q psy6522 422 CSQWRFI 428 (1407)
Q Consensus 422 t~~~~~~ 428 (1407)
+.+|..+
T Consensus 287 ~~~W~~~ 293 (308)
T 1zgk_A 287 TDTWSEV 293 (308)
T ss_dssp TTEEEEE
T ss_pred CCEEeec
Confidence 9888764
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.58 E-value=1.3 Score=51.51 Aligned_cols=200 Identities=9% Similarity=-0.044 Sum_probs=104.2
Q ss_pred CEEEEEECCCeEEEEEcCCCcEEEEEeCC-CCCeEEEEE--cC-CCCEEEEE-ECCCeEEEEeCCCCceEEEEecc----
Q psy6522 217 EVIVTGADDLLIKLWRARDGKLLATLRGC-SGEISDIAI--DN-RNILLAAG-TVDKTIRIWNLQTLAPISVLVGH---- 287 (1407)
Q Consensus 217 ~~LaTGS~DG~V~IWDl~tg~~l~tl~gH-~~~ItsLaf--Sp-Dg~lLaSg-s~DGtIrVWDl~tg~~v~~l~~H---- 287 (1407)
.+++.++.||.|.-+|..+|+.+.++... ..++....- .+ ++..++.. +.||.|..++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999998754 123322110 01 23333333 57999999999888655444311
Q ss_pred CCceEEEEeccCC-----CCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC-----CC
Q psy6522 288 QGIITGVNFCPLE-----VNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-----PG 357 (1407)
Q Consensus 288 ~~~VtsLafspd~-----~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS-----pd 357 (1407)
..++.. .=.|-- ......+++|+.+|.+...|+.+++.+.......+...... ....|.... ..
T Consensus 91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-----~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGS-----QSVDCSPEEKIKLQEC 164 (339)
T ss_dssp TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------------
T ss_pred cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccc-----cccccccccccccccC
Confidence 111211 000000 00237889999999999999999866555433221100000 000111110 12
Q ss_pred CceEEEeeCCceEEEEeccCCCCCcee--EEEeecCCC--c-ceEEEcCCCCEEEEEeCCCeEEEEEccCCce
Q psy6522 358 GLFLATGSGDHHVRVYKMDGVDSPLGI--LEVEEHSDK--V-DSIQWSHSHLRFVSGSRDGTALIWYYKCSQW 425 (1407)
Q Consensus 358 g~~Lasgs~DG~I~IwDl~~~~~~~~i--~~l~~h~~~--V-~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~ 425 (1407)
+..|+.|..+..+.+.+- .. ..... .....+... + .+..++.++.+ +.++.||.|.-+|..++..
T Consensus 165 ~~~v~ig~~~y~v~~~~~-sG-~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHSY-DG-ASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp CCEEEEEEEEEECEECCT-TS-CCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred CCeEEEecceEEEEEECC-CC-CeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 346777776666666663 21 11111 111111000 0 00011234555 5578899999998887763
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.50 E-value=3.5 Score=55.85 Aligned_cols=264 Identities=8% Similarity=0.051 Sum_probs=141.6
Q ss_pred CeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCc
Q psy6522 268 KTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNA 347 (1407)
Q Consensus 268 GtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~ 347 (1407)
..|.|.|+.++..+..- .-.--+...+|.. +.|+.-. ..++.+||+.+.......... .
T Consensus 48 ~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~----~iiALra-g~~lQiFnl~~k~klks~~~~-------------e 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRR---PISADSAIMNPAS----KVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------D 106 (1630)
T ss_pred ceEEEEECCCCCCcccc---cccchhhccCCCc----ceEEEec-CCeEEEeehHHhhhhcccccC-------------C
Confidence 47888888775543211 1111233456643 4555544 778999999887555444433 2
Q ss_pred ceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEee--cCCCcceEEEcCCCCEEEEEe-------CCCeEEEE
Q psy6522 348 HILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEE--HSDKVDSIQWSHSHLRFVSGS-------RDGTALIW 418 (1407)
Q Consensus 348 ~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~--h~~~V~sIafSpdg~~LaSgs-------~DGtI~IW 418 (1407)
.|.--.|-... .|+..+ +..|..|++.+...+..++...+ ....|.+-..+++.++++..+ -.|.+.+|
T Consensus 107 ~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 33334444333 333332 34799999966555544443221 135677777788888776543 34778888
Q ss_pred EccCCceEEeeeccCcCCCCCccccccccccccEEEEEEC--CCCCEEEEEEe---cCCeEEEEECCCC---ce------
Q psy6522 419 YYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWD--ASDRWVITAIN---FNFQIKIWDAFNG---DL------ 484 (1407)
Q Consensus 419 Dl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafS--pdg~~Lasgs~---~DG~I~IWDl~tg---~~------ 484 (1407)
.+..+....+ .+|......+... +....|++-.. ..+.++|.++... ..
T Consensus 185 S~er~~sQ~i-----------------egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~ 247 (1630)
T 1xi4_A 185 SVDRKVSQPI-----------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA 247 (1630)
T ss_pred ecccccchhh-----------------hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccc
Confidence 7765432111 1111111111111 11111222111 1367888887542 11
Q ss_pred EEEEec---CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccceeeeeeeecCCCCCceeEEEECCCCCEEEEEe
Q psy6522 485 VQVLKG---HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTD 561 (1407)
Q Consensus 485 l~~l~g---H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs 561 (1407)
+..+-. -.+--.++..++ ...++...+.-|.|.++|+.++ .++..-. .....|+..+-+....-+++..
T Consensus 248 ~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~--~~i~~~r-----is~~~iF~~~~~~~~~g~~~vn 319 (1630)
T 1xi4_A 248 VDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETG--TCIYMNR-----ISGETIFVTAPHEATAGIIGVN 319 (1630)
T ss_pred ccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccc--hhhhhcc-----ccCCceEEeccCCCCCceEEEc
Confidence 111111 122334667777 6678888889999999999999 5544322 2234566555555444455555
Q ss_pred CCCeEEEEEcCCCccccc
Q psy6522 562 SYGHLLVYGLGGFKRPQN 579 (1407)
Q Consensus 562 ~DG~I~Iwdl~sg~~~~~ 579 (1407)
..|.|.-..+.....+.-
T Consensus 320 r~G~vl~v~v~~~~iv~y 337 (1630)
T 1xi4_A 320 RKGQVLSVCVEEENIIPY 337 (1630)
T ss_pred CCceEEEEEEccchhhhh
Confidence 778887777776655433
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=92.92 E-value=6 Score=44.59 Aligned_cols=196 Identities=8% Similarity=-0.019 Sum_probs=94.1
Q ss_pred EEcCCCCEEEEEEC----CC-------eEEEEEcCCCcEEEE--EeCCCCCeEEEEEcCCCCEEEEEECC-------CeE
Q psy6522 211 LFDKLGEVIVTGAD----DL-------LIKLWRARDGKLLAT--LRGCSGEISDIAIDNRNILLAAGTVD-------KTI 270 (1407)
Q Consensus 211 afSpdG~~LaTGS~----DG-------~V~IWDl~tg~~l~t--l~gH~~~ItsLafSpDg~lLaSgs~D-------GtI 270 (1407)
+...++.+++.|+. ++ .+.+||..+.+-... +......-..+.+ ++++++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34456778888873 12 277888877653321 1111111122222 56777777754 357
Q ss_pred EEEeCCCCceEEEEeccCCc-eEEEEeccCCCCCceEEEEEecC------CceeEEeeccccccceeeeccccccccccC
Q psy6522 271 RIWNLQTLAPISVLVGHQGI-ITGVNFCPLEVNGFNYLASTSTD------GCIGFWKYKLDIDISKTVFHEPVMFNERIR 343 (1407)
Q Consensus 271 rVWDl~tg~~v~~l~~H~~~-VtsLafspd~~~~~~~LaSgs~D------GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~ 343 (1407)
.+||+.+.+-...-...... -.+++.. ++.+++.|+.+ ..+.+||+.+..-.. ....+
T Consensus 130 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~p-------- 194 (318)
T 2woz_A 130 LCYDPVAAKWSEVKNLPIKVYGHNVISH-----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD--LAPMK-------- 194 (318)
T ss_dssp EEEETTTTEEEEECCCSSCEESCEEEEE-----TTEEEEECCEESSSCBCCCEEEEETTTTEEEE--ECCCS--------
T ss_pred EEEeCCCCCEeECCCCCCcccccEEEEE-----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEE--CCCCC--------
Confidence 88888776533221111000 0112221 22666777642 347777776652111 11111
Q ss_pred CCCcceEEEEECCCCceEEEeeCC-----ceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCC------
Q psy6522 344 PGNAHILCSSFSPGGLFLATGSGD-----HHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRD------ 412 (1407)
Q Consensus 344 ~h~~~I~~vafSpdg~~Lasgs~D-----G~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~D------ 412 (1407)
.......++.+ ++.+++.|+.+ ..+.+||+.. .....+..+..... -.+++ ..++.+++.|+.+
T Consensus 195 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~-~~~~~-~~~~~i~v~GG~~~~~~~~ 269 (318)
T 2woz_A 195 TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT-NKWEVMTEFPQERS-SISLV-SLAGSLYAIGGFAMIQLES 269 (318)
T ss_dssp SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT-CCEEECCCCSSCCB-SCEEE-EETTEEEEECCBCCBC---
T ss_pred CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC-CeEEECCCCCCccc-ceEEE-EECCEEEEECCeeccCCCC
Confidence 11111222333 56777777643 3567888743 22222221111111 11222 2355667776653
Q ss_pred --------CeEEEEEccCCceEEe
Q psy6522 413 --------GTALIWYYKCSQWRFI 428 (1407)
Q Consensus 413 --------GtI~IWDl~t~~~~~~ 428 (1407)
..+.+||+.+.+|..+
T Consensus 270 ~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 270 KEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp -CCBCCBCCCEEEEETTTTEEEEE
T ss_pred ceeccceeeeEEEEeCCCCEehhh
Confidence 3588899999888765
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.73 E-value=22 Score=42.92 Aligned_cols=120 Identities=11% Similarity=0.105 Sum_probs=61.5
Q ss_pred CceEEEEeccCCCCCce-EEEEEecCCceeEEeeccccccceeeeccccccccc-cCCCCcceEEEEECCC----CceEE
Q psy6522 289 GIITGVNFCPLEVNGFN-YLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNER-IRPGNAHILCSSFSPG----GLFLA 362 (1407)
Q Consensus 289 ~~VtsLafspd~~~~~~-~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~-~~~h~~~I~~vafSpd----g~~La 362 (1407)
..-+.|+|.|++ . .|+++...|.|++++..... ....+...+..+... ..........|+|+|+ +.+.+
T Consensus 14 ~~P~~~a~~pdG----~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 14 RQPVGALHSGDG----SQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp SSEEEEECCSSS----SCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred CCceEEEECCCC----CeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 345799999975 3 45666778999998643221 111111111111110 0112456789999996 44333
Q ss_pred EeeC--C----------ceEEEEeccCC--C-----CCceeEEEe--ecCCCcceEEEcCCCCEEEEEeCCC
Q psy6522 363 TGSG--D----------HHVRVYKMDGV--D-----SPLGILEVE--EHSDKVDSIQWSHSHLRFVSGSRDG 413 (1407)
Q Consensus 363 sgs~--D----------G~I~IwDl~~~--~-----~~~~i~~l~--~h~~~V~sIafSpdg~~LaSgs~DG 413 (1407)
+-+. + ..|.-|.+... . ....+..+. ........|+|.|||.++++.+..+
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 3221 1 13444555321 1 122333332 1123457899999998776665443
No 342
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=92.59 E-value=0.044 Score=53.68 Aligned_cols=42 Identities=24% Similarity=0.203 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
+..++++...|++|+..+.+.||..|||...||+|..+|..-
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~P 56 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAP 56 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCC
Confidence 446888899999999999999999999999999999999753
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=92.19 E-value=2 Score=49.37 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCEEEEEECC-CeEEEEEcCC--CcE--EEEEe-CCCCCeEEEEEcCCCCEEEEEEC-C---------CeEEEEeCCCC
Q psy6522 215 LGEVIVTGADD-LLIKLWRARD--GKL--LATLR-GCSGEISDIAIDNRNILLAAGTV-D---------KTIRIWNLQTL 278 (1407)
Q Consensus 215 dG~~LaTGS~D-G~V~IWDl~t--g~~--l~tl~-gH~~~ItsLafSpDg~lLaSgs~-D---------GtIrVWDl~tg 278 (1407)
++++++.|+.+ ..+.++|+.+ .+- +..+. .....-.++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 55666666543 4688888864 221 11122 11111122222 5667777765 2 46888998876
Q ss_pred ce
Q psy6522 279 AP 280 (1407)
Q Consensus 279 ~~ 280 (1407)
+-
T Consensus 97 ~W 98 (357)
T 2uvk_A 97 SW 98 (357)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.91 E-value=0.94 Score=52.18 Aligned_cols=145 Identities=9% Similarity=-0.040 Sum_probs=68.0
Q ss_pred CeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEec-----CCeEEEEEC--CCCceE
Q psy6522 413 GTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINF-----NFQIKIWDA--FNGDLV 485 (1407)
Q Consensus 413 GtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~-----DG~I~IWDl--~tg~~l 485 (1407)
..+.+||+.+.+|..... .+. .......++.+ ++++++.++.. ...+.+||+ .+.+-.
T Consensus 168 ~~v~~yd~~~~~W~~~~~-----~p~--------~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGE-----SPW--------YGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp CEEEEEETTTTEEEEEEE-----CSS--------CCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred ccEEEEeCCCCcEEECCC-----CCC--------CCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 578999999999877521 100 00011112222 45555555431 235777876 333221
Q ss_pred E--EEecCCCCeE-EEEEecCCCCEEEEEeCC----------------------CcEEEEECCCCCccceeeeeeeecCC
Q psy6522 486 Q--VLKGHTNEVF-VLESHPFDSRVLLSAGHD----------------------GLIIIWDILSSKQRGYKWFHNIVEGQ 540 (1407)
Q Consensus 486 ~--~l~gH~~~V~-sLafsP~dg~~LaSgs~D----------------------G~V~IWDi~sgk~~~l~~~~~~~~g~ 540 (1407)
. .+........ +++. . ++.+++.||.+ ..+.+||+.+.+=..+..+. ..
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~- 306 (357)
T 2uvk_A 233 KLAPVSSPDGVAGGFAGI-S-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS---QG- 306 (357)
T ss_dssp ECCCSSTTTCCBSCEEEE-E-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS---SC-
T ss_pred ecCCCCCCcccccceEEE-E-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC---CC-
Confidence 1 1111111111 1222 2 56788888742 25778998876322222221 11
Q ss_pred CCCceeEEEECCCCCEEEEEeCCC------eEEEEEcCCCccccccC
Q psy6522 541 GEGALFDGKWSPDGTTCALTDSYG------HLLVYGLGGFKRPQNIP 581 (1407)
Q Consensus 541 ~~~~I~slafSpDG~~LAsgs~DG------~I~Iwdl~sg~~~~~lp 581 (1407)
... ..+...++++++.|+.++ .|.++++.+++.+...+
T Consensus 307 -r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 307 -RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp -CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred -ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 111 122334778888887543 46667888877655443
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.54 E-value=3.6 Score=52.53 Aligned_cols=202 Identities=13% Similarity=0.036 Sum_probs=102.7
Q ss_pred CCCCEEEEEECC----CeEEEEEcCCCcEEEEE-e-------CCCCCeEEEEEcCCCCEEEEEECC------CeEEEEeC
Q psy6522 214 KLGEVIVTGADD----LLIKLWRARDGKLLATL-R-------GCSGEISDIAIDNRNILLAAGTVD------KTIRIWNL 275 (1407)
Q Consensus 214 pdG~~LaTGS~D----G~V~IWDl~tg~~l~tl-~-------gH~~~ItsLafSpDg~lLaSgs~D------GtIrVWDl 275 (1407)
-++.+++.|+.+ ..+.+||..+++-...- . .....-.++.+..++++++.|+.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46889998887543322 1 111122233332277788888754 35788898
Q ss_pred CCCceEEE--EeccCCceEEEEeccCCCCCceEEEEEecCC--ceeEEeeccccccceeeeccccccccccCCCCcceEE
Q psy6522 276 QTLAPISV--LVGHQGIITGVNFCPLEVNGFNYLASTSTDG--CIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILC 351 (1407)
Q Consensus 276 ~tg~~v~~--l~~H~~~VtsLafspd~~~~~~~LaSgs~DG--tI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 351 (1407)
.+.+-... +...... .+++...+ +.+++.|+.++ .+.+||+.+..-....... . .........+
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~----~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g---~----~p~~r~~~~a 543 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPD----GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKD---E----FFQNSLVSAG 543 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTT----SCEEEECCBCSSCSEEEEETTTTEEEECCCSS---G----GGGSCCBSCE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcC----CEEEEECCCCCCCCEEEEECCCCceEEccCCC---C----CCCcccceeE
Confidence 87543221 1111111 12222122 27788887655 5777877665211111000 0 0001112233
Q ss_pred EEECCC-CceEEEeeC--C-----ceEEEEeccCCCC-----CceeEEEeecCCCcceEEEcCCCCEEEEEeC-------
Q psy6522 352 SSFSPG-GLFLATGSG--D-----HHVRVYKMDGVDS-----PLGILEVEEHSDKVDSIQWSHSHLRFVSGSR------- 411 (1407)
Q Consensus 352 vafSpd-g~~Lasgs~--D-----G~I~IwDl~~~~~-----~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~------- 411 (1407)
+.+..+ +.+++.|+. + ..+.+||+....- ...+.........-.+++...++.+++.|+.
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 555554 677777765 2 4588899854331 1112111111111123333333667777774
Q ss_pred -CCeEEEEEccCCceEE
Q psy6522 412 -DGTALIWYYKCSQWRF 427 (1407)
Q Consensus 412 -DGtI~IWDl~t~~~~~ 427 (1407)
...|.+||+.+..|..
T Consensus 624 ~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 624 RTNSIISLDPLSETLTS 640 (695)
T ss_dssp TTTSEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCeEEE
Confidence 3469999999999874
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.53 E-value=0.92 Score=49.37 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=82.9
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCce------EEEEe--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDL------VQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 451 ~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~------l~~l~--gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
.+..++|+|+|.+.++ . +|.|+-.+..+... -..+- +-.. -.++.|.| ++.+.++ .||.|+-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~-~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--L-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--E-TTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--e-CCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 5668999998885555 4 88888877655221 11111 1111 36788888 8877777 6699988876
Q ss_pred CCCCccceeeee--eeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCCcccc------c-------cCCceEec
Q psy6522 523 LSSKQRGYKWFH--NIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGFKRPQ------N-------IPRELFFH 587 (1407)
Q Consensus 523 ~sgk~~~l~~~~--~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg~~~~------~-------lp~~v~Fs 587 (1407)
.+. ....++. ..+...+-..+..+.|.|+|.+.|+. +|.++-..-.++.... . .-..++|.
T Consensus 115 P~~--~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQS--DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCS--TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcC--CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 443 2222211 11112233578899999999988888 6776543333222110 0 11246688
Q ss_pred CCCcEEEecCCCeeeE
Q psy6522 588 TDYRTLNRPNGLFEPT 603 (1407)
Q Consensus 588 ~D~~~Lv~~~~~~~~v 603 (1407)
+++.........+|..
T Consensus 191 ~~G~l~~v~~g~~Y~~ 206 (236)
T 1tl2_A 191 SVGTLFGVQGGKFYED 206 (236)
T ss_dssp TTSCEEEEETTEEEEE
T ss_pred CCCcEEEEeCCeEEec
Confidence 8888777663334333
No 347
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.79 E-value=28 Score=40.81 Aligned_cols=172 Identities=9% Similarity=0.088 Sum_probs=103.4
Q ss_pred CCCCEEEEEEcCCCCEEEE--EEC-------------CCeEEEEEcCCC--cEEEEEeCC------CCCeEEEEEc---C
Q psy6522 203 HLSAVFCVLFDKLGEVIVT--GAD-------------DLLIKLWRARDG--KLLATLRGC------SGEISDIAID---N 256 (1407)
Q Consensus 203 H~~~V~~vafSpdG~~LaT--GS~-------------DG~V~IWDl~tg--~~l~tl~gH------~~~ItsLafS---p 256 (1407)
+--+|+.+...+.+++-+. |-. --.|.+||+.++ ++++++.-. .+.+..|++. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 3457888888887765553 211 126889999999 999887632 3468888887 2
Q ss_pred C----CCEEEEEE-CCCeEEEEeCCCCceEEEEec--------------c----CCceEEEEeccCCCCCceEEEEEecC
Q psy6522 257 R----NILLAAGT-VDKTIRIWNLQTLAPISVLVG--------------H----QGIITGVNFCPLEVNGFNYLASTSTD 313 (1407)
Q Consensus 257 D----g~lLaSgs-~DGtIrVWDl~tg~~v~~l~~--------------H----~~~VtsLafspd~~~~~~~LaSgs~D 313 (1407)
+ +.++..+. ..+-|.|+|+.+++....+.. . ...|..|+.+|+..+++..|+.....
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pls 244 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGS 244 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESS
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECC
Confidence 2 33444433 467899999998876555421 0 13678888888744445677776665
Q ss_pred CceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC-CCCceEEEeeCCceEEEEeccC
Q psy6522 314 GCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS-PGGLFLATGSGDHHVRVYKMDG 377 (1407)
Q Consensus 314 GtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS-pdg~~Lasgs~DG~I~IwDl~~ 377 (1407)
+ -++|.+.+........ ...+..... ++.......+++. .+|.++++--....|..|+..+
T Consensus 245 s-~~ly~V~T~~L~~~~~-~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 245 A-IKVYSVNTKELKQKGG-KLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp C-SEEEEEEHHHHSSTTC-CCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred C-CcEEEEEHHHhhCcch-hhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 4 3555554331111100 111111111 1112344566775 6788788878888999999843
No 348
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.75 E-value=0.12 Score=51.09 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1103 CEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1103 c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
+.++...|++|+..+.+.||..|||...||+|..+|..-
T Consensus 9 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~P 47 (121)
T 2d9e_A 9 LILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKP 47 (121)
T ss_dssp HHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCC
Confidence 345566677788889999999999999999999999653
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.59 E-value=21 Score=40.47 Aligned_cols=175 Identities=3% Similarity=-0.070 Sum_probs=91.9
Q ss_pred EEEEcCCCCEEEEEECC--------------CeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEE----CCCeE
Q psy6522 209 CVLFDKLGEVIVTGADD--------------LLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGT----VDKTI 270 (1407)
Q Consensus 209 ~vafSpdG~~LaTGS~D--------------G~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs----~DGtI 270 (1407)
+--++++|.+|+-.... ..|+..++..++... +... .+..|++++++|+-.. ....|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence 34457788888766542 367777877665333 3211 1236788888888776 23456
Q ss_pred EEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEec-CCceeEEeeccccccceeeeccccccccccCCCCcce
Q psy6522 271 RIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTST-DGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHI 349 (1407)
Q Consensus 271 rVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~-DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I 349 (1407)
...++.. .....+..+.. ..|++++ ..|+..+. ...|...++.... ...... +..
T Consensus 132 y~~~~dG-s~~~~lt~~~~----~~~~~~g----~~iy~t~~g~~~Iy~~~l~g~~--~~~l~~-------------~~~ 187 (302)
T 3s25_A 132 YRIRIDG-EEKKKIKNHYL----FTCNTSD----RYFYYNNPKNGQLYRYDTASQS--EALFYD-------------CNC 187 (302)
T ss_dssp EEEETTS-CCCEEEESSCC----CCSEEET----TEEEEECTTTCCEEEEETTTTE--EEEEEC-------------SCE
T ss_pred EEEECCC-CCeEEEeCCCc----eEeeEEC----CEEEEEeCCCceEEEEECCCCC--EEEEeC-------------CCc
Confidence 6666653 34445544433 4556654 55555544 4556555554432 111111 111
Q ss_pred EEEEECCCCceEEEeeCCc--eEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeC--CCeEEEEEcc
Q psy6522 350 LCSSFSPGGLFLATGSGDH--HVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSR--DGTALIWYYK 421 (1407)
Q Consensus 350 ~~vafSpdg~~Lasgs~DG--~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~--DGtI~IWDl~ 421 (1407)
...++|++.+|+-....+ .|..-++++.. ..+ +. ...+ ..|+|++.+|+-++. .+.|..-++.
T Consensus 188 -~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~--Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 188 -YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVV--LT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -EEEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEE--CS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -cceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEE--Ee--CCCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 123568888887765433 45555554332 111 11 1222 347788888776533 2444444444
No 350
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=89.11 E-value=34 Score=38.66 Aligned_cols=212 Identities=5% Similarity=-0.010 Sum_probs=107.6
Q ss_pred CCCCEEEEEE--CCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEeCCC
Q psy6522 214 KLGEVIVTGA--DDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVD--------------KTIRIWNLQT 277 (1407)
Q Consensus 214 pdG~~LaTGS--~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~D--------------GtIrVWDl~t 277 (1407)
.+|..|+... .++.|...+..... ...+... .+--|+++|.+|+-+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566666554 24556666654333 3333321 234557888888776543 4677777776
Q ss_pred CceEEEEeccCCceEEEEeccCCCCCceEEEEEe--cCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEEC
Q psy6522 278 LAPISVLVGHQGIITGVNFCPLEVNGFNYLASTS--TDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFS 355 (1407)
Q Consensus 278 g~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs--~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafS 355 (1407)
..... +.... +..|++++ ..|+... .++.-.||-+............. .+ .+|+
T Consensus 98 ~~~~~-l~~~~----~~~~s~~g----~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-------------~~--~~~~ 153 (302)
T 3s25_A 98 HGSTV-LDPDP----CIYASLIG----NYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-------------YL--FTCN 153 (302)
T ss_dssp CCCEE-EECSC----EEEEEEET----TEEEEEEESSSSCEEEEEEETTSCCCEEEESS-------------CC--CCSE
T ss_pred CcceE-eecCC----ccEEEEeC----CEEEEEeecCCCCceEEEEECCCCCeEEEeCC-------------Cc--eEee
Confidence 65333 32221 23566654 5666554 34555555544332111111111 11 3456
Q ss_pred CCCceEEEeeC-CceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCC--eEEEEEccCCceEEeeecc
Q psy6522 356 PGGLFLATGSG-DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDG--TALIWYYKCSQWRFIRLDM 432 (1407)
Q Consensus 356 pdg~~Lasgs~-DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DG--tI~IWDl~t~~~~~~~l~~ 432 (1407)
+++..|+..+. ...|.+.++.+.. ...+ +. +.. .+.++|++.+|+-....+ .|..-++.......+
T Consensus 154 ~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l--~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L---- 222 (302)
T 3s25_A 154 TSDRYFYYNNPKNGQLYRYDTASQS-EALF--YD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL---- 222 (302)
T ss_dssp EETTEEEEECTTTCCEEEEETTTTE-EEEE--EC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC----
T ss_pred EECCEEEEEeCCCceEEEEECCCCC-EEEE--eC---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE----
Confidence 67777776554 5677777774322 1212 21 222 234668888877665443 444444444332111
Q ss_pred CcCCCCCccccccccccccEEEEEECCCCCEEEEEEe-cCCeEEEEECCCC
Q psy6522 433 NTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN-FNFQIKIWDAFNG 482 (1407)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~-~DG~I~IWDl~tg 482 (1407)
....+ ..|+|++..|+.+.. ..+.|..-++...
T Consensus 223 ---------------t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 223 ---------------TEANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ---------------SCSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred ---------------eCCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 01112 237788988887643 2456777776543
No 351
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=88.97 E-value=0.08 Score=52.11 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhHhCccccccccccCCccc--cCCcccccCCC
Q psy6522 1102 TCEKIITGLEEVMGLSVAEPFLVPVDISS--LSEENSHSDSS 1141 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~~~~~~~f~~pv~l~~--yp~y~~~~~~~ 1141 (1407)
.|.+||..|.+.-..++|.||..|||... ||+|..+|..-
T Consensus 13 ~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~P 54 (120)
T 3jvl_A 13 CCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHP 54 (120)
T ss_dssp HHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSC
T ss_pred HHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCC
Confidence 58777766665554456999999999999 99999999653
No 352
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=88.94 E-value=0.091 Score=61.86 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=4.9
Q ss_pred ccccccCCC
Q psy6522 1233 SYNKFSGRG 1241 (1407)
Q Consensus 1233 ~~~~~~~~~ 1241 (1407)
++|+|++.+
T Consensus 311 ~~N~l~~~~ 319 (386)
T 2ca6_A 311 NGNRFSEED 319 (386)
T ss_dssp TTSBSCTTS
T ss_pred cCCcCCcch
Confidence 456665554
No 353
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=88.74 E-value=0.27 Score=48.20 Aligned_cols=39 Identities=10% Similarity=-0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHhHhCccccccccccCCccccCCcccccCCCC
Q psy6522 1104 EKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1104 ~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
.++...|++|+..+.+.||..|||...||+|..+|..--
T Consensus 11 ~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PM 49 (117)
T 2i7k_A 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPM 49 (117)
T ss_dssp HHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCC
T ss_pred HHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCC
Confidence 455566788888999999999999999999999997543
No 354
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.62 E-value=0.24 Score=48.91 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1102 TCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
.|..|+..|-+.-. -+++.||..|||...||+|..+|..-
T Consensus 17 ~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~P 59 (123)
T 2dat_A 17 QMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKP 59 (123)
T ss_dssp HHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSC
T ss_pred HHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCC
Confidence 46666665555432 35899999999999999999999754
No 355
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=88.40 E-value=0.21 Score=51.55 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHH--hHhCccccccccccCCccccCCcccccCCC
Q psy6522 1099 RDATCEKIITGLE--EVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1099 ~~~~c~r~~~~~~--~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
....|.+|+..|- .|+..+.+.||..|||...||+|..+|..-
T Consensus 26 ~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~P 70 (158)
T 3uv4_A 26 DQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNP 70 (158)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCc
Confidence 4567889998874 488899999999999999999999999754
No 356
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=88.11 E-value=0.21 Score=48.46 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1104 EKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1104 ~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..+...|++|+..+.+.||..|||...||+|..+|..-
T Consensus 10 ~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~P 47 (112)
T 3d7c_A 10 TTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFP 47 (112)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCC
Confidence 44455667778889999999999999999999999753
No 357
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=87.90 E-value=0.33 Score=47.43 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1101 ATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..|..| |++|+..+.+.||..|||...||+|..+|..-
T Consensus 16 ~~c~~i---l~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~P 53 (117)
T 3g0l_A 16 ALCSMI---LTEMETHEDAWPFLLPVNLKLVPGYKKVIKKP 53 (117)
T ss_dssp HHHHHH---HHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHH---HHHHHhCCCchhhcCcCChhhcCChHHHcCCC
Confidence 356555 56677889999999999999999999999653
No 358
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=87.51 E-value=0.26 Score=48.66 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.3
Q ss_pred HHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1107 ITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1107 ~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
...|++|+..+.+.||..|||...||+|..+|.--
T Consensus 16 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~P 50 (123)
T 3q2e_A 16 KELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTP 50 (123)
T ss_dssp HHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSC
T ss_pred HHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCC
Confidence 45567778889999999999999999999999753
No 359
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=87.29 E-value=0.23 Score=48.96 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
-..|..|+ ++|+..+.+.||..|||...||+|..+|..-
T Consensus 15 ~~~~~~il---~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~P 53 (121)
T 1e6i_A 15 DAAIQNIL---TELQNHAAAWPFLQPVNKEEVPDYYDFIKEP 53 (121)
T ss_dssp HHHHHHHH---HHHHHSTTCGGGSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHHHH---HHHHcCCCchhhCCCCChhhCcCHHHHcCCC
Confidence 35676665 6667789999999999999999999999653
No 360
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=86.80 E-value=0.32 Score=48.07 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
...|+ ..|++|+..+.+.||..|||...||+|..+|..-
T Consensus 15 ~~~l~---~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~P 53 (123)
T 3hme_A 15 QQLLE---HFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHP 53 (123)
T ss_dssp HHHHH---HHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHH---HHHHHHHhCCccHhhcCCCChhhccCHHHHCCCC
Confidence 44454 4466777789999999999999999999999643
No 361
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=86.38 E-value=0.23 Score=49.19 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
...|..|+..|..+.+ -+++.||..|||...||+|..+|..-
T Consensus 17 ~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~P 61 (124)
T 3mb4_A 17 QQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKP 61 (124)
T ss_dssp HHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSC
T ss_pred HHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCC
Confidence 4568888888877665 68999999999999999999999753
No 362
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=86.18 E-value=0.31 Score=48.96 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1103 CEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1103 c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
+..+...|++|+..+.+.||..|||...||+|..+|..-
T Consensus 15 ~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~P 53 (135)
T 3rcw_A 15 TVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHP 53 (135)
T ss_dssp HHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSC
T ss_pred HHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCC
Confidence 344455667788889999999999999999999999753
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.10 E-value=61 Score=39.92 Aligned_cols=256 Identities=9% Similarity=0.071 Sum_probs=129.4
Q ss_pred eEEEEEecCCceeEEeeccccccceeeeccccc-------------cc--cccCCCCcceEEEEECC---CCceEEEeeC
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKTVFHEPVM-------------FN--ERIRPGNAHILCSSFSP---GGLFLATGSG 366 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~-------------~~--~~~~~h~~~I~~vafSp---dg~~Lasgs~ 366 (1407)
-.|.+|+..|.|+++-+.+++.+..+....+.. +. ..+..+...-..+++.. ||++|+....
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 457788889999999888776554432211100 00 01122222333455543 6778877764
Q ss_pred -CceEEEEeccCCCCCceeEEEeecCCCcceEEEc--CCCCEEEEEeCC-------CeEEEEEccCC-ce-EEeeeccCc
Q psy6522 367 -DHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWS--HSHLRFVSGSRD-------GTALIWYYKCS-QW-RFIRLDMNT 434 (1407)
Q Consensus 367 -DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafS--pdg~~LaSgs~D-------GtI~IWDl~t~-~~-~~~~l~~~~ 434 (1407)
+..|...+++... ...+..+ .....+..+.|- |+..++++++.. |.. ..+... +. .....+..
T Consensus 151 an~RvAri~l~~~~-~d~Ii~i-Pn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~- 225 (638)
T 3sbq_A 151 ANSRVARIRLDIMK-CDKMITV-PNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAE- 225 (638)
T ss_dssp TTTEEEEEETTTTE-EEEEEEC-TTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETT-
T ss_pred CCcceEEEECCcEe-eceeEeC-CCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCC-
Confidence 5667777774322 2233332 234567777776 677788887753 221 100111 00 00000100
Q ss_pred CCCCCccccccccccccEEEEEECCCCCEEEEEEecCC---------------eEEEEE---------------------
Q psy6522 435 CLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF---------------QIKIWD--------------------- 478 (1407)
Q Consensus 435 ~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG---------------~I~IWD--------------------- 478 (1407)
.+ .... ..........+..+++|++.++.+. +. .|.++|
T Consensus 226 tm---~v~~-Qv~v~gnld~~~~~~~g~~af~t~y-NsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv 300 (638)
T 3sbq_A 226 TM---EMAF-QVIVDGNLDNTDADYTGRFAAATCY-NSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKT 300 (638)
T ss_dssp TC---SEEE-EEEESSCCCCEEECSSSSEEEEEES-CTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred cc---EEEE-EEEcCCChhhcCCCCCCCEEEEeee-ccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCe
Confidence 00 0000 0000112223455677777776664 11 234444
Q ss_pred ----CCC----CceEEEEecCCCCeEEEEEecCCCCEEEEEeC-CCcEEEEECCCCCc-------cceeeeeeeecCCCC
Q psy6522 479 ----AFN----GDLVQVLKGHTNEVFVLESHPFDSRVLLSAGH-DGLIIIWDILSSKQ-------RGYKWFHNIVEGQGE 542 (1407)
Q Consensus 479 ----l~t----g~~l~~l~gH~~~V~sLafsP~dg~~LaSgs~-DG~V~IWDi~sgk~-------~~l~~~~~~~~g~~~ 542 (1407)
.+. +..+..+-.-......+.++| ||++++.++. +.+|.++|+..... ..-..+.. .-.-.
T Consensus 301 ~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a--e~e~G 377 (638)
T 3sbq_A 301 PVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG--EPELG 377 (638)
T ss_dssp CEEECSCBTTBCCSSEEEEEESSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE--CCBCC
T ss_pred eEEccccccccCCceEEEEeCCCCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe--eccCC
Confidence 332 111111111112345677889 9998877765 78999999974210 00011110 01112
Q ss_pred CceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 543 GALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 543 ~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
-.....+|.++|.-..+.--|..|.-|++..
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 3577899999996556666899999999864
No 364
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=85.77 E-value=0.41 Score=48.05 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhHhCccccccccccCCccccCCcccccCCCC
Q psy6522 1102 TCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
.|.+|| ++|+..+.+.||..|||. .||+|..+|..--
T Consensus 24 ~c~~il---~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~Pm 60 (135)
T 2yyn_A 24 KCERLL---LFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPM 60 (135)
T ss_dssp HHHHHH---HHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCC
T ss_pred HHHHHH---HHHHhCccchhhcCCCcc-cCCCHHHHcCCCC
Confidence 576665 566788999999999999 6999999987543
No 365
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=85.37 E-value=0.36 Score=47.34 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=37.1
Q ss_pred CchhhHHHHHHHHHhHhCc-cccccccccCCcc--ccCCcccccCCC
Q psy6522 1098 DRDATCEKIITGLEEVMGL-SVAEPFLVPVDIS--SLSEENSHSDSS 1141 (1407)
Q Consensus 1098 ~~~~~c~r~~~~~~~~~~~-~~~~~f~~pv~l~--~yp~y~~~~~~~ 1141 (1407)
+.++-++.+...|++|+.. +.+.||..|||-. .||+|..+|..-
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~P 54 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNP 54 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSC
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCC
Confidence 3466788889999999885 6999999999988 699999999643
No 366
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=85.34 E-value=0.46 Score=47.38 Aligned_cols=38 Identities=11% Similarity=-0.044 Sum_probs=32.5
Q ss_pred HHHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1104 EKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1104 ~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..+...+++|+..+.+.||..|||...||+|..+|..-
T Consensus 13 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~P 50 (130)
T 3dai_A 13 IFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQP 50 (130)
T ss_dssp HHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSC
T ss_pred HHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCC
Confidence 34455678888999999999999999999999999753
No 367
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.30 E-value=13 Score=47.41 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=81.4
Q ss_pred CCCceEEEeeCC----ceEEEEeccCCCCCceeE-EEe----ecCCCcceEEEcC-CCCEEEEEeCC------CeEEEEE
Q psy6522 356 PGGLFLATGSGD----HHVRVYKMDGVDSPLGIL-EVE----EHSDKVDSIQWSH-SHLRFVSGSRD------GTALIWY 419 (1407)
Q Consensus 356 pdg~~Lasgs~D----G~I~IwDl~~~~~~~~i~-~l~----~h~~~V~sIafSp-dg~~LaSgs~D------GtI~IWD 419 (1407)
-++.+++.|+.+ ..+.+||+.. .....+. .+. .....-.+++... ++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~-~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHY-DKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECS-SCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCC-CeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777753 3578888742 2222222 100 0111112333333 67777777754 3588999
Q ss_pred ccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCceEEEEe-----cCC
Q psy6522 420 YKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGDLVQVLK-----GHT 492 (1407)
Q Consensus 420 l~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG--~I~IWDl~tg~~l~~l~-----gH~ 492 (1407)
+.+..|..... .+ . ...... ++.-.++..++.|+. ++ .+.+||..+..-...-. ...
T Consensus 475 ~~t~~W~~~~~-----~p-----~----~R~~h~-~~~~~~~~iyv~GG~-~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 538 (695)
T 2zwa_A 475 MKTREWSMIKS-----LS-----H----TRFRHS-ACSLPDGNVLILGGV-TEGPAMLLYNVTEEIFKDVTPKDEFFQNS 538 (695)
T ss_dssp TTTTEEEECCC-----CS-----B----CCBSCE-EEECTTSCEEEECCB-CSSCSEEEEETTTTEEEECCCSSGGGGSC
T ss_pred CCCCcEEECCC-----CC-----C----Ccccce-EEEEcCCEEEEECCC-CCCCCEEEEECCCCceEEccCCCCCCCcc
Confidence 99988876421 00 0 111112 222236777777765 33 68999988765332211 011
Q ss_pred CCeEEEEEecCCCCEEEEEeC--C-----CcEEEEECCCC
Q psy6522 493 NEVFVLESHPFDSRVLLSAGH--D-----GLIIIWDILSS 525 (1407)
Q Consensus 493 ~~V~sLafsP~dg~~LaSgs~--D-----G~V~IWDi~sg 525 (1407)
....++.+...++.+++.||. + ..|.+||+.+.
T Consensus 539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 112334455523678888876 2 35889998877
No 368
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=84.98 E-value=0.61 Score=48.55 Aligned_cols=41 Identities=7% Similarity=-0.152 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhHhCccccccccccCCcc--ccCCcccccCCCC
Q psy6522 1102 TCEKIITGLEEVMGLSVAEPFLVPVDIS--SLSEENSHSDSSS 1142 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~~~~~~~f~~pv~l~--~yp~y~~~~~~~~ 1142 (1407)
-.......|.+|+..+.+.||..|||.. .||+|+.+|..--
T Consensus 22 ~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~Pm 64 (166)
T 3fkm_X 22 WYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPM 64 (166)
T ss_dssp HHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCC
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCC
Confidence 3444566678889999999999999987 5999999998644
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.70 E-value=64 Score=37.29 Aligned_cols=157 Identities=10% Similarity=-0.002 Sum_probs=72.3
Q ss_pred cceEEEEECCC--CceEEEeeCCceEEEEeccCCCCCceeEEEe----------------ecCCCcceEEEcCC-CCEEE
Q psy6522 347 AHILCSSFSPG--GLFLATGSGDHHVRVYKMDGVDSPLGILEVE----------------EHSDKVDSIQWSHS-HLRFV 407 (1407)
Q Consensus 347 ~~I~~vafSpd--g~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~----------------~h~~~V~sIafSpd-g~~La 407 (1407)
..|.++++.|. ...|.+++..+.|...+- .......+..+. .....|.+|.++|. ...|+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 35788999872 455666655554443321 222222221110 01235778999874 34455
Q ss_pred EEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCC-CEEEEEEecCCeEEEEECCCCceEE
Q psy6522 408 SGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASD-RWVITAINFNFQIKIWDAFNGDLVQ 486 (1407)
Q Consensus 408 Sgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg-~~Lasgs~~DG~I~IWDl~tg~~l~ 486 (1407)
.+..++.|...+-....|.......... ............+.++++++.. ..|+++. .+.|...+- .++.-.
T Consensus 194 vg~~~ggl~~s~DgG~tW~~~~~~~~~~----~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~~s~D-~G~tW~ 266 (394)
T 3b7f_A 194 IGMSSGGVFESTDAGTDWKPLNRGCAAN----FLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIYRMDR-REGVWK 266 (394)
T ss_dssp EEEETBEEEEESSTTSSCEECCTTCCCT----TSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEEEEET-TTTEEE
T ss_pred EEECCCCEEEECCCCCCceECCCCcccc----ccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEEEeCC-CCCcce
Confidence 5555555544433333343321100000 0000000012358889999863 5566655 344555442 233333
Q ss_pred EEec--CC---CCeEEEEEecCCCCEEEEE
Q psy6522 487 VLKG--HT---NEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 487 ~l~g--H~---~~V~sLafsP~dg~~LaSg 511 (1407)
.+.. .. ..+.+++++|.+...|+.+
T Consensus 267 ~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 267 RIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp CGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 2221 11 3457788887444545544
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=84.57 E-value=67 Score=37.44 Aligned_cols=161 Identities=6% Similarity=0.028 Sum_probs=85.9
Q ss_pred cCCCCEEEEEECCCeEEEEeCCC-------CceEEEEe-ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 255 DNRNILLAAGTVDKTIRIWNLQT-------LAPISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 255 SpDg~lLaSgs~DGtIrVWDl~t-------g~~v~~l~-~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
-++..++++.+.+|.|+--.+.. ++-+..+. ...+.+..+...... ..|+..+..|.+..+....-..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~----d~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTH----DTLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTT----CEEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCC----CEEEEEeCCCeEEEEEHHHCcC
Confidence 46778999999999999765422 11122222 223455555554433 6677777777665554332111
Q ss_pred cceeeeccccccccccCCCCcceEEEE-EC--CCCceEEEeeCCceEEEEeccCCC----CCceeEEEeecCCCcceEEE
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSS-FS--PGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQW 399 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~va-fS--pdg~~Lasgs~DG~I~IwDl~~~~----~~~~i~~l~~h~~~V~sIaf 399 (1407)
........+......+... ..|.++. +. .++.+|+.++..|.++...+.... .......+.. .+.+..+..
T Consensus 80 ~~r~a~G~~i~~ll~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~ 157 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLESG-ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVAL 157 (370)
T ss_dssp CCTTSCCEEGGGSCCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEE
T ss_pred CCcccCCcCHhhccCCCCC-CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEE
Confidence 1111111111111112222 4455443 33 245689999999999998874221 1222223332 345555555
Q ss_pred cCCCCEEEEEeCCCeEEEEEcc
Q psy6522 400 SHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 400 Spdg~~LaSgs~DGtI~IWDl~ 421 (1407)
......|+..+..|.+..+...
T Consensus 158 ~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 158 TDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp ECSCCEEEEEETTSEEEEEEGG
T ss_pred eCCCceEEEEeCCCeEEEEEcc
Confidence 5555677788888888877654
No 371
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=84.45 E-value=0.38 Score=48.28 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1107 ITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1107 ~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
...|++|+..+.+.||..|||...||+|..+|.--
T Consensus 27 ~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~P 61 (135)
T 3mb3_A 27 EELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTP 61 (135)
T ss_dssp HHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCC
Confidence 45566667788999999999999999999999753
No 372
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=84.25 E-value=0.28 Score=48.96 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhHhCcc---ccccccccCCccc--cCCcccccCCC
Q psy6522 1102 TCEKIITGLEEVMGLS---VAEPFLVPVDISS--LSEENSHSDSS 1141 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~~~---~~~~f~~pv~l~~--yp~y~~~~~~~ 1141 (1407)
.|..|+. .|+... ++.||..|||... ||+|..+|..-
T Consensus 26 ~c~~il~---~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~P 67 (130)
T 2ouo_A 26 CCSGILK---EMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHP 67 (130)
T ss_dssp HHHHHHH---HHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSC
T ss_pred HHHHHHH---HHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCC
Confidence 4766655 455443 6899999999985 99999998653
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=83.52 E-value=1.2e+02 Score=39.81 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=47.6
Q ss_pred cccEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEecC-----CCCeEEEEEecCCCCEEEEE---eCCCcEEEE
Q psy6522 449 KIKVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLKGH-----TNEVFVLESHPFDSRVLLSA---GHDGLIIIW 520 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~gH-----~~~V~sLafsP~dg~~LaSg---s~DG~V~IW 520 (1407)
...+.+++..++..++++-+. |++++||++.+++++.+..-. ..........+..+.+++.. ..+|..++|
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~-D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~ 313 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIY 313 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEET-TCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEE
T ss_pred cceEEEEeecCCCcEEEEEEC-CCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEE
Confidence 346777888888899999998 999999999999998875421 11111122233233433332 235677777
Q ss_pred ECC
Q psy6522 521 DIL 523 (1407)
Q Consensus 521 Di~ 523 (1407)
.+.
T Consensus 314 ~~~ 316 (950)
T 4gq2_M 314 KLN 316 (950)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 374
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=83.52 E-value=0.36 Score=47.12 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
-..|..|+..|....+ -+++.||..|||...||.|..+|..-
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~P 51 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQP 51 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCC
Confidence 3568888888887753 37899999999999999999999643
No 375
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.31 E-value=23 Score=40.99 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=61.4
Q ss_pred CEEEEEECCCeEEEEeCCCCceEEEEecc-CCceEEEEeccCCCCCceEEEEE-ecCCceeEEeeccccccceeeecccc
Q psy6522 259 ILLAAGTVDKTIRIWNLQTLAPISVLVGH-QGIITGVNFCPLEVNGFNYLAST-STDGCIGFWKYKLDIDISKTVFHEPV 336 (1407)
Q Consensus 259 ~lLaSgs~DGtIrVWDl~tg~~v~~l~~H-~~~VtsLafspd~~~~~~~LaSg-s~DGtI~vWDl~t~~~~~~~~~~~~~ 336 (1407)
.+++.++.||.|.-+|..+|+.+..+... ..++....- +....++..++.. +.||.|..++..++..........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~-- 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ-- 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-CccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc--
Confidence 37888999999999999999999988754 122222111 1110122333333 689999998877662221111110
Q ss_pred ccccccCCCCcceEE---EEE-----CCCCceEEEeeCCceEEEEeccC
Q psy6522 337 MFNERIRPGNAHILC---SSF-----SPGGLFLATGSGDHHVRVYKMDG 377 (1407)
Q Consensus 337 ~~~~~~~~h~~~I~~---vaf-----Spdg~~Lasgs~DG~I~IwDl~~ 377 (1407)
.. ...++.. ..+ +..+..+++|+.+|.+...|+.+
T Consensus 88 -lv-----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t 130 (339)
T 2be1_A 88 -LV-----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN 130 (339)
T ss_dssp -HH-----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTT
T ss_pred -ce-----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC
Confidence 00 0011111 001 01355788999999999998843
No 376
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=82.75 E-value=47 Score=36.96 Aligned_cols=223 Identities=14% Similarity=0.089 Sum_probs=112.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
..|..|+....- .++. . ||.|..|-....-.+..-......|..|+.... ..++. . ||.|..|-......
T Consensus 24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-----hs~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-----HSLAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-----EEEEE-E-TTEEEEEECCTTST
T ss_pred CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-----EEEEE-E-CCEEEEeeCCCCCC
Confidence 357777765442 2333 4 899999976542211111112235666666542 34444 4 89999997654322
Q ss_pred cceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEE
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRF 406 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~L 406 (1407)
+. .|... ...|..++.... +.++-. +|.|+.|-.+.....- + .......|..|+..... .
T Consensus 94 lg-----~P~~~-------~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~--~~~~~~~i~~i~~G~~~--~ 153 (282)
T 3qhy_B 94 TT-----VPAEA-------RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-V--PAEAQSGVTALDGGVYT--A 153 (282)
T ss_dssp TC-----CCGGG-------SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-C--CGGGGSSEEEEEECSSE--E
T ss_pred CC-----CCccc-------CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-C--CccCCCCeEEEEcccCE--E
Confidence 21 11111 135666666543 333334 8899999764322211 0 01123446666554433 2
Q ss_pred EEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-CceE
Q psy6522 407 VSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDLV 485 (1407)
Q Consensus 407 aSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t-g~~l 485 (1407)
+.-. ||.|..|-...... +.. .......|..++...+ +.++- . +|.|+.|-... +++
T Consensus 154 ~~l~-~G~v~~wG~n~~gq----------lg~------p~~~~~~v~~i~~G~~--hs~al-~-~G~v~~wG~n~~gql- 211 (282)
T 3qhy_B 154 LAVK-NGGVIAWGDNYFGQ----------TTV------PAEAQSGVDDVAGGIF--HSLAL-K-DGKVIAWGDNRYKQT- 211 (282)
T ss_dssp EEEE-TTEEEEEECCTTST----------TSC------CGGGGSSEEEEEECSS--EEEEE-E-TTEEEEEECCTTSTT-
T ss_pred EEEE-CCEEEEecCCCCCC----------CCC------ceecCCCeEEEEecCC--EEEEE-E-CCeEEEEECCCCCCC-
Confidence 2233 79999996543210 000 0011345666765433 33333 5 89999997654 222
Q ss_pred EEEecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q psy6522 486 QVLKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSS 525 (1407)
Q Consensus 486 ~~l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sg 525 (1407)
..-......|..|+... ...++.. ||.|+.|-....
T Consensus 212 g~p~~~~~~v~~i~~G~--~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGE--WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp CCCGGGGSSCCEEEECS--SCEEEEE--TTEEEEESTTCC
T ss_pred CCCcccCCCceEEEcCC--CEEEEEE--CCEEEEecCCCC
Confidence 11011123567776654 2333333 999999986654
No 377
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=82.40 E-value=0.61 Score=46.20 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1101 ATCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..|..|+..|....+ -+++.||..|||...||+|..+|..-
T Consensus 12 ~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~P 55 (126)
T 3mqm_A 12 QIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDP 55 (126)
T ss_dssp HHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSC
T ss_pred HHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCC
Confidence 357777777776653 47899999999999999999999743
No 378
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=82.25 E-value=1.2e+02 Score=38.57 Aligned_cols=242 Identities=8% Similarity=0.026 Sum_probs=115.5
Q ss_pred EEE-EcCCCCEEEEEEC-----CCeEEEEEcCCCcEEE-EEe-CCCC------CeEEEEEcCCCCEEEEEE---------
Q psy6522 209 CVL-FDKLGEVIVTGAD-----DLLIKLWRARDGKLLA-TLR-GCSG------EISDIAIDNRNILLAAGT--------- 265 (1407)
Q Consensus 209 ~va-fSpdG~~LaTGS~-----DG~V~IWDl~tg~~l~-tl~-gH~~------~ItsLafSpDg~lLaSgs--------- 265 (1407)
.+. ++|++++++.+-. -..|+++|+.+++.+. .|. .... ....++|..++.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 344 8899988776522 2379999999998763 122 0000 113447764444544321
Q ss_pred -CCCeEEEEeCCCCc--eEEEEeccCCce-EEEEeccCCCCCce---EEEEEecCC---ceeEEeeccccccceeeeccc
Q psy6522 266 -VDKTIRIWNLQTLA--PISVLVGHQGII-TGVNFCPLEVNGFN---YLASTSTDG---CIGFWKYKLDIDISKTVFHEP 335 (1407)
Q Consensus 266 -~DGtIrVWDl~tg~--~v~~l~~H~~~V-tsLafspd~~~~~~---~LaSgs~DG---tI~vWDl~t~~~~~~~~~~~~ 335 (1407)
....|+.|.+-+.. -...+.+....+ .+...+.++ ... .+++.+.+. .+.+.+........ ....
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~-- 287 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSD--TISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKIN-- 287 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCT--TTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECC--
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCC--CceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEee--
Confidence 12578888886642 233444433333 233344433 221 344444232 23333333211100 0000
Q ss_pred cccccccCCCCcceEEEEECCCCceEEEe----------eCCceEEEEeccCCCC----CceeEE-E-eecCCCcceEEE
Q psy6522 336 VMFNERIRPGNAHILCSSFSPGGLFLATG----------SGDHHVRVYKMDGVDS----PLGILE-V-EEHSDKVDSIQW 399 (1407)
Q Consensus 336 ~~~~~~~~~h~~~I~~vafSpdg~~Lasg----------s~DG~I~IwDl~~~~~----~~~i~~-l-~~h~~~V~sIaf 399 (1407)
.+.... +..+.++.+++.. ...+.|.+.++..... ...... + ......+..+.+
T Consensus 288 -------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (711)
T 4hvt_A 288 -------MPSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFIST 357 (711)
T ss_dssp -------SCTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEE
T ss_pred -------cCCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEE
Confidence 011111 1233355554432 2456788888854211 111111 2 222345678888
Q ss_pred cCCCCEEEEEeCCCe--EEEEEccCCceEEee-eccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEe---cCCe
Q psy6522 400 SHSHLRFVSGSRDGT--ALIWYYKCSQWRFIR-LDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAIN---FNFQ 473 (1407)
Q Consensus 400 Spdg~~LaSgs~DGt--I~IWDl~t~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~---~DG~ 473 (1407)
..+ .++++...++. |.++++.++.+.... +. ......+..+.+++++..++.... .-+.
T Consensus 358 ~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~--------------lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~ 422 (711)
T 4hvt_A 358 TKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK--------------LPYQNAIFGMSSYEEEEEALITIENSIVPPT 422 (711)
T ss_dssp CSS-CEEEEEEETTEEEEEEECEETTEECCCEEEC--------------CCSTTCEEEEECCTTCSCEEEEEECSSSCCE
T ss_pred ECC-EEEEEEEECCEEEEEEEECCCCceEEEeccC--------------CCCCeEEEEEeecCcCCEEEEEEecCCCCCE
Confidence 865 46777777775 566666555421100 00 001234555666677765554433 2356
Q ss_pred EEEEECC
Q psy6522 474 IKIWDAF 480 (1407)
Q Consensus 474 I~IWDl~ 480 (1407)
+..+|+.
T Consensus 423 ~~~~d~~ 429 (711)
T 4hvt_A 423 IYLWVKT 429 (711)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 8888876
No 379
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=82.20 E-value=0.44 Score=47.44 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhHh----CccccccccccCCccccCCcccccCCCC
Q psy6522 1101 ATCEKIITGLEEVM----GLSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~----~~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
..|.+|+..|-+.- +-+++.||..|||...||+|..+|..--
T Consensus 14 ~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~Pm 59 (129)
T 2grc_A 14 KKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV 59 (129)
T ss_dssp HHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCC
T ss_pred HHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCC
Confidence 46888888877664 3468999999999999999999997543
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.19 E-value=81 Score=36.61 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=122.5
Q ss_pred eEEEEEecCCceeEEeecccccccee---eeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCC-
Q psy6522 305 NYLASTSTDGCIGFWKYKLDIDISKT---VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS- 380 (1407)
Q Consensus 305 ~~LaSgs~DGtI~vWDl~t~~~~~~~---~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~- 380 (1407)
...+....||.|..|-......+-.- ....|... .. .....+..++++....+.++-..+|.|+.|-.+....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v-~~--~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLL-ES--IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEEC-GG--GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEc-cc--ccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 45666678899999865433211100 00001000 01 1123455567777777777778899999996431110
Q ss_pred ------Ccee-EEEeecC-CCcceEEEcCCCCEEEEEeCCCeEEEEEccC-CceEEeeeccCcCCCCCcccccccccccc
Q psy6522 381 ------PLGI-LEVEEHS-DKVDSIQWSHSHLRFVSGSRDGTALIWYYKC-SQWRFIRLDMNTCLPHTKETSDETNKKIK 451 (1407)
Q Consensus 381 ------~~~i-~~l~~h~-~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 451 (1407)
.... ..+.... ..|..|+.. ....++-..+|.|+.|-... +++- ....................
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG-----~~~~~~~~~p~~v~~~~~~~ 212 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLG-----HSDSEDQLKPKLVEALQGHR 212 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTC-----SSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcC-----CCCCcccccceEecccCCCe
Confidence 0001 1111111 245555443 34556667899999996432 1100 00000000000001112345
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECCC-Cc---------e-EEEEecC-CCCeEEEEEecCCCCEEEEEeCCCcEEE
Q psy6522 452 VTMVAWDASDRWVITAINFNFQIKIWDAFN-GD---------L-VQVLKGH-TNEVFVLESHPFDSRVLLSAGHDGLIII 519 (1407)
Q Consensus 452 VtslafSpdg~~Lasgs~~DG~I~IWDl~t-g~---------~-l~~l~gH-~~~V~sLafsP~dg~~LaSgs~DG~V~I 519 (1407)
|..++......+.++... +|.|+.|-... ++ . ...+... ...|..|+... ...+.-..||.|+.
T Consensus 213 v~~ia~G~g~~~t~~l~~-~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~---~hs~alt~~G~v~~ 288 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTD-DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS---QFSVALTKSGAVYT 288 (389)
T ss_dssp EEEEEECCSSCEEEEEET-TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET---TEEEEEETTSCEEE
T ss_pred EEEEEEcCCCcEEEEEcc-CCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC---CEEEEEeCCCeEEE
Confidence 666666543345555555 89999997542 11 1 1111111 22466666643 45555578999999
Q ss_pred EECCCCC------ccceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 520 WDILSSK------QRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 520 WDi~sgk------~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
|-..... ..... ....+.......|..++. -..+.++.+.+|.|+.|.....
T Consensus 289 wG~n~~GqLG~g~~~~~~-~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVR-RPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp EECCGGGTTCSSSCCCEE-EEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTT
T ss_pred EeCCCCCCCCCCCCcccc-CCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCCC
Confidence 9764321 01111 111112112234555544 3445566688899999987653
No 381
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=81.98 E-value=1.1 Score=39.30 Aligned_cols=54 Identities=6% Similarity=0.169 Sum_probs=43.7
Q ss_pred hCCCCCCCeEEEEecC-eEEEEEEcccCCCCCCCceeEEEEECCCCCCCCCCCCCCCCCC
Q psy6522 1006 AREWNVGDRFCSMIDD-AWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPPKE 1064 (1407)
Q Consensus 1006 ~~~~~~g~rf~~~~~~-~~~~G~i~~~~~~p~s~w~~~~V~wd~~~~~~~SpW~~e~~~~ 1064 (1407)
--.|++|+++-.+|.| .||-++|.++..= ..|.|.++.+..+.+.+=+|-|+..
T Consensus 4 ~~~~~vGd~vmArW~D~~yYpA~I~si~~~-----~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp -CCCCTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEcCCCCEeeEEEEEECCC-----CeEEEEEeCCceEEEeHHHcccCCc
Confidence 3589999999999944 4999999998321 4599999999889999888888843
No 382
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=80.74 E-value=0.54 Score=48.04 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHhHhC----ccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGLEEVMG----LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~~~~~~----~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
.+.|+.|+..|-+++. -+++.||..||+...||+|..+|..-
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~P 71 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEP 71 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCC
Confidence 6789999999988875 46899999999999999999999753
No 383
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.64 E-value=82 Score=35.66 Aligned_cols=251 Identities=11% Similarity=0.019 Sum_probs=125.3
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCc-------eEEEEec-cCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccccc
Q psy6522 256 NRNILLAAGTVDKTIRIWNLQTLA-------PISVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDI 327 (1407)
Q Consensus 256 pDg~lLaSgs~DGtIrVWDl~tg~-------~v~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~ 327 (1407)
++..++++.+.+|.|+--.+.... -+..+.- ..+.+..+..+... ..++..+..|.+.-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~----~~ll~~T~~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTH----DYLFMISNEGKLYLINAYEIKDS 81 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETT----CEEEEEETTSEEEEEEGGGSCC-
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCC----CEEEEEECCCeEEEEEHHHCCCC
Confidence 456688889999999887664322 1111111 12334444444332 67777888887766654422111
Q ss_pred ceeeeccccccccccCCCCcceEEEEECC---CCceEEEeeCCceEEEEeccCCC----CCceeEEEeecCCCcceEEEc
Q psy6522 328 SKTVFHEPVMFNERIRPGNAHILCSSFSP---GGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWS 400 (1407)
Q Consensus 328 ~~~~~~~~~~~~~~~~~h~~~I~~vafSp---dg~~Lasgs~DG~I~IwDl~~~~----~~~~i~~l~~h~~~V~sIafS 400 (1407)
.......+......+... ..|.++...+ +..+|+..+..|.++...+.... .......+.. .+.+..+...
T Consensus 82 ~r~~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 82 SRASKGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIV 159 (312)
T ss_dssp ------CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEE
T ss_pred CccCCCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEe
Confidence 111111111111122233 3344443322 45678888999999988874221 1222223333 4556666555
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECC
Q psy6522 401 HSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAF 480 (1407)
Q Consensus 401 pdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~ 480 (1407)
..+..|+..+.+|.+..+....-. .+.....+.... . ......|..+..-.++..|++.+. .|.++..++.
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~------~~gR~~~Gv~~i-~-L~~~d~vv~~~~v~~~~~l~~vt~-~G~~kr~~~~ 230 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVR------LTNRGTQGVCGM-K-LKEGDLFVKVLSVKENPYLLIVSE-NGYGKRLNMS 230 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSC------BCCTTBCCEECC-C-CCTTCCEEEEEECTTCSEEEEEET-TSEEEEEEGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHcc------ccCCCCCCeEeE-E-eCCCCEEEEEEEECCCCeEEEEEC-CCceEEEEHH
Confidence 555678888899998888765311 000000111111 1 112345555555455666777777 8888888864
Q ss_pred C-------CceEEEEe---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q psy6522 481 N-------GDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDI 522 (1407)
Q Consensus 481 t-------g~~l~~l~---gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi 522 (1407)
. ++-+..+. ...+.+..+.... +...++..+..|.+.-..+
T Consensus 231 e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~-~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 231 KISELKRGATGYTSYKKSDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp GSCBCCTTCCCEECSCTTCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEG
T ss_pred HhcccCCCCCCEEeeEccCCCCCeEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence 2 12222222 2223444433333 3455555566675544444
No 384
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=80.19 E-value=84 Score=35.49 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=126.2
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCceEE---------EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccc
Q psy6522 256 NRNILLAAGTVDKTIRIWNLQTLAPIS---------VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDID 326 (1407)
Q Consensus 256 pDg~lLaSgs~DGtIrVWDl~tg~~v~---------~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~ 326 (1407)
|+..++++.+.+|.|+--.+.+.+... .+..+ +.+..+..+... ..|+..+..|.+..+....-..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~----~~ll~fT~~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTH----DHILCFSSRGRVYSMKVYQLPE 75 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETT----CEEEEEETTSEEEEEEGGGSCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCC----CEEEEEECCCEEEEEEhhHCcC
Confidence 345678888999999877665422111 12222 233333333322 6777777778765554432111
Q ss_pred cceeeeccccccccccCCCCcceEEEEE-C--CCCceEEEeeCCceEEEEeccCCC----CCceeEEEeecCCCcceEEE
Q psy6522 327 ISKTVFHEPVMFNERIRPGNAHILCSSF-S--PGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQW 399 (1407)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~h~~~I~~vaf-S--pdg~~Lasgs~DG~I~IwDl~~~~----~~~~i~~l~~h~~~V~sIaf 399 (1407)
........+......+.. ...|.++.. . .++.+++..+.+|.++-..+.... .......+..+ +.+..+..
T Consensus 76 ~~~~a~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 76 ATRGARGRPIVNLLPLEQ-DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp CCSSSCCEEGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred CCCCCCCeEhhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 111111111111111222 244555533 2 345678889999999998774211 12122223333 55555555
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEEC
Q psy6522 400 SHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDA 479 (1407)
Q Consensus 400 Spdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl 479 (1407)
......|+..+.+|.+..+....-. .+.....+... ........|..+....++..|++.+. .|.++-.++
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~------~~gr~a~Gv~~--i~L~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Kr~~~ 224 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVR------AMGCNTTGVRG--IRLGEGDKVVSLIVPRGDGAILTATQ-NGYGKRTAV 224 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSC------BCCTTCCCEEC--CCCCTTCCEEEEECCCSSCEEEEEET-TSEEEEECG
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcC------ccCCCCCCeEe--EEeCCCCEEEEEEEecCCCEEEEEEc-CCceEEEEH
Confidence 5555677788888888877665311 00000001111 11123445666655555667777777 888888876
Q ss_pred CC-------CceEEE--EecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 480 FN-------GDLVQV--LKGHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 480 ~t-------g~~l~~--l~gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
.. ++-+.. +....+.+..+.... +...|+..+.+|.+.-+.+..
T Consensus 225 ~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 225 AEYPTKSRATKGVISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GGSCCCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred HHhccCCCCCCCEEeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 32 111222 222234555544443 445566777788877777644
No 385
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=79.61 E-value=1.2 Score=44.24 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHhHhCccccccccccCCcc--ccCCcccccCCC
Q psy6522 1109 GLEEVMGLSVAEPFLVPVDIS--SLSEENSHSDSS 1141 (1407)
Q Consensus 1109 ~~~~~~~~~~~~~f~~pv~l~--~yp~y~~~~~~~ 1141 (1407)
.|++|+..+.+.||..|||.. .||+|..+|..-
T Consensus 29 il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~P 63 (127)
T 2oss_A 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTP 63 (127)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSC
T ss_pred HHHHHHhCccchhhcCCCChhhccCccHHHHcCCC
Confidence 467788899999999999986 899999998754
No 386
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=79.02 E-value=0.92 Score=50.87 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCCC
Q psy6522 1101 ATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
+-+..+...|++|+..+.+.||..|||...||+|+.+|..--
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~Pm 55 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPM 55 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCC
Confidence 334455666778888999999999999999999999998643
No 387
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.95 E-value=1.6 Score=39.10 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=42.7
Q ss_pred hCCCCCCCeEEEEe-cCeEEEEEEcccCCCCCCCceeEEEEECCCCCCCCCCCCCCCCC
Q psy6522 1006 AREWNVGDRFCSMI-DDAWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPPK 1063 (1407)
Q Consensus 1006 ~~~~~~g~rf~~~~-~~~~~~G~i~~~~~~p~s~w~~~~V~wd~~~~~~~SpW~~e~~~ 1063 (1407)
...|++||++..+| ||.||.++|.++.. + ..|.|.++....|.+.+=.|-|++
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~--~---~~~~V~f~Dyn~e~v~~~~lrplp 60 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINK--E---GTFTVQFYDGVIRCLKRMHIKAMP 60 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEEST--T---SSEEEEETTSCEEEECGGGEECCC
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECC--C---CEEEEEEecCCeEEecHHHCeeCC
Confidence 35899999999999 66799999999842 2 468999988877777776777773
No 388
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=78.54 E-value=0.72 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=29.0
Q ss_pred HHHhHhCccccccccccCCcc--ccCCcccccCCC
Q psy6522 1109 GLEEVMGLSVAEPFLVPVDIS--SLSEENSHSDSS 1141 (1407)
Q Consensus 1109 ~~~~~~~~~~~~~f~~pv~l~--~yp~y~~~~~~~ 1141 (1407)
.|+.|+..+.+.||..|||.. .||+|..+|..-
T Consensus 40 il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~P 74 (154)
T 4alg_A 40 VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQP 74 (154)
T ss_dssp HHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSC
T ss_pred HHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCC
Confidence 367888889999999999998 699999999754
No 389
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=78.03 E-value=0.69 Score=46.09 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1101 ATCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..|..|+..|..+.+ -+++.||..|||...||+|..+|..-
T Consensus 20 ~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~P 63 (130)
T 3k2j_A 20 FQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMP 63 (130)
T ss_dssp HHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCC
Confidence 456666666666654 36799999999999999999999753
No 390
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=77.95 E-value=1.5 Score=39.95 Aligned_cols=55 Identities=5% Similarity=0.138 Sum_probs=43.6
Q ss_pred HhCCCCCCCeEEEEecC-eEEEEEEcccCCCCCCCceeEEEEECCCCCCCCCCCCCCCCCC
Q psy6522 1005 IAREWNVGDRFCSMIDD-AWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPPKE 1064 (1407)
Q Consensus 1005 ~~~~~~~g~rf~~~~~~-~~~~G~i~~~~~~p~s~w~~~~V~wd~~~~~~~SpW~~e~~~~ 1064 (1407)
-...|++|+++-.+|.| .||-++|+++..= ..|+|+++.+-.+.+.+=+|-|+..
T Consensus 18 ~~~~f~vGd~VlArW~D~~yYPAkI~sV~~~-----~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 18 GSSEFQINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp ---CCCTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCEEEEEGGGEEECC-
T ss_pred CCcccccCCEEEEEeCCCCEeeEEEEEECCC-----CeEEEEEeCCCeEEecHHHcccCCh
Confidence 34689999999999944 5999999999322 3699999999899999999988844
No 391
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.95 E-value=97 Score=34.42 Aligned_cols=206 Identities=11% Similarity=0.023 Sum_probs=110.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEE---EEcCCCcEEEEEeCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEeCCCCc-
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKL---WRARDGKLLATLRGCSGEISDIAIDN-RNILLAAGTVDKTIRIWNLQTLA- 279 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~I---WDl~tg~~l~tl~gH~~~ItsLafSp-Dg~lLaSgs~DGtIrVWDl~tg~- 279 (1407)
+.|.++....+..+|+.-+..|.++- |++..+.....+. ....|..+.... +..+++..+.+|.|+-..+....
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 45666555555556666667776553 3333221111132 345566664421 56799999999999998875432
Q ss_pred ---eEE--EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEE
Q psy6522 280 ---PIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSF 354 (1407)
Q Consensus 280 ---~v~--~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vaf 354 (1407)
-+. .+.. .+.+..+..... ...|+..+..|.+..+....-......... ... ..+.. ...|..+..
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~----~~~ill~T~~G~~~r~~~~eip~~gR~a~G--v~~-i~L~~-~d~vv~~~~ 173 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVD----ETHILLFTKKGRVARFSVREVPPSTPGARG--VQG-IKLEK-NDETSGLRI 173 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCS----SCEEEEEETTSEEEEEEGGGSCBCCTTCCC--EEC-CCCCT-TCCEEEEEE
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCC----CCEEEEEECCCEEEEEEhhhCCCcCCCCCC--EEE-EccCC-CCEEEEEEE
Confidence 111 2222 234555544432 267888888998877765432111111011 111 12222 255666555
Q ss_pred CCCCceEEEeeCCceEEEEeccCCC----CCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEE--EEcc
Q psy6522 355 SPGGLFLATGSGDHHVRVYKMDGVD----SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALI--WYYK 421 (1407)
Q Consensus 355 Spdg~~Lasgs~DG~I~IwDl~~~~----~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~I--WDl~ 421 (1407)
.+++..|+..+..|.++...+..-. ...-+..+ ...+.+..+........++..+.+|.+.. ++..
T Consensus 174 ~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 174 WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp ESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred eCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5566788888999999988874211 11112222 22344444433333445666677777766 6554
No 392
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.90 E-value=1.3e+02 Score=39.51 Aligned_cols=37 Identities=14% Similarity=-0.107 Sum_probs=31.1
Q ss_pred CcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEee
Q psy6522 393 KVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIR 429 (1407)
Q Consensus 393 ~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~ 429 (1407)
.+.+++..++..++++-+.|+++++|++.++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4566777778889999999999999999999887653
No 393
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.89 E-value=0.96 Score=47.28 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHhHhCccccccccccCCccccCCcccccCC
Q psy6522 1104 EKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDS 1140 (1407)
Q Consensus 1104 ~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~ 1140 (1407)
+.+...|++|+..+.+.||..|||...||+|..+|..
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~ 111 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKE 111 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSS
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCC
Confidence 3445566778889999999999999999999999964
No 394
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.40 E-value=1.4e+02 Score=35.87 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCeEEEEeCCCC---ceEEEEe-----c----cCCceEEEEeccC
Q psy6522 247 GEISDIAIDNRNI-LLAAGTVDKTIRIWNLQTL---APISVLV-----G----HQGIITGVNFCPL 299 (1407)
Q Consensus 247 ~~ItsLafSpDg~-lLaSgs~DGtIrVWDl~tg---~~v~~l~-----~----H~~~VtsLafspd 299 (1407)
..-+.|+|.|||. .|+++...|.|++++.... ..+..+. + .......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 4445567899999975432 1222221 1 1356789999995
No 395
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.97 E-value=1e+02 Score=34.19 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 285 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~ 285 (1407)
.|..|+..... .++. . ||.|..|-....-.+..-......|..|+....-.+ +. . ||.|..|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~-~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSL-AL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEE-EE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEE-EE-E-CCEEEEeeCCCCCCCCCCc
Confidence 35555554332 2222 4 788888865432211111112346777776554333 33 4 8999999765422111111
Q ss_pred ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEee
Q psy6522 286 GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGS 365 (1407)
Q Consensus 286 ~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs 365 (1407)
.-...|..|+.... ..++ -. ||.|..|-......+.. +.. ....|..++...... ++-.
T Consensus 99 ~~~~~v~~ia~G~~-----hs~a-l~-~G~v~~wG~n~~gqlg~-----~~~-------~~~~i~~i~~G~~~~--~~l~ 157 (282)
T 3qhy_B 99 EARSGVDAIAAGAW-----ASYA-LK-DGKVIAWGDDSDGQTTV-----PAE-------AQSGVTALDGGVYTA--LAVK 157 (282)
T ss_dssp GGSSSEEEEEEETT-----EEEE-EE-TTEEEEEECCTTSTTSC-----CGG-------GGSSEEEEEECSSEE--EEEE
T ss_pred ccCCCeEEEECcCC-----EEEE-Ee-CCeEEEecCCCCCcCCC-----Ccc-------CCCCeEEEEcccCEE--EEEE
Confidence 11235777776552 3333 34 99999997654322211 110 113466665543332 2223
Q ss_pred CCceEEEEeccCCCCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEcc
Q psy6522 366 GDHHVRVYKMDGVDSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 366 ~DG~I~IwDl~~~~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~ 421 (1407)
+|.|..|-........ +. ......|..|+...... ++. .||.|+.|=..
T Consensus 158 -~G~v~~wG~n~~gqlg-~p--~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 158 -NGGVIAWGDNYFGQTT-VP--AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDN 206 (282)
T ss_dssp -TTEEEEEECCTTSTTS-CC--GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECC
T ss_pred -CCEEEEecCCCCCCCC-Cc--eecCCCeEEEEecCCEE-EEE--ECCeEEEEECC
Confidence 6888888764322211 00 01134566666544432 333 59999999544
No 396
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=75.36 E-value=1.8e+02 Score=36.83 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=42.9
Q ss_pred ccccEEEEEECCCCCEEEEEEecCC--eEEEEECCCCc-eEEE-EecC-CCCeEEEEEecCCCCEEEEEeC---CCcEEE
Q psy6522 448 KKIKVTMVAWDASDRWVITAINFNF--QIKIWDAFNGD-LVQV-LKGH-TNEVFVLESHPFDSRVLLSAGH---DGLIII 519 (1407)
Q Consensus 448 ~~~~VtslafSpdg~~Lasgs~~DG--~I~IWDl~tg~-~l~~-l~gH-~~~V~sLafsP~dg~~LaSgs~---DG~V~I 519 (1407)
....+..+.|..+ .++++... ++ .|.++++.++. .+.. +... .+.|..+.+.+..+.++++.+. -+.+..
T Consensus 348 ~~~~l~~~~~~~~-~l~~~~~~-~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 348 ANEVFNFISTTKD-RVFLATYD-NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp TTEEEEEEEECSS-CEEEEEEE-TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred CCCeEEEEEEECC-EEEEEEEE-CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 3456778888865 44444444 66 46777776664 2222 3222 2456666666634456665554 367888
Q ss_pred EECC
Q psy6522 520 WDIL 523 (1407)
Q Consensus 520 WDi~ 523 (1407)
+|+.
T Consensus 426 ~d~~ 429 (711)
T 4hvt_A 426 WVKT 429 (711)
T ss_dssp ECTT
T ss_pred EeCC
Confidence 8876
No 397
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=74.70 E-value=1.3e+02 Score=34.68 Aligned_cols=48 Identities=10% Similarity=-0.017 Sum_probs=26.9
Q ss_pred CEEEEEECCCeEEEEEcCC-CcEEEEE--eCCCCCeEEEEEcC--CCCEEEEEE
Q psy6522 217 EVIVTGADDLLIKLWRARD-GKLLATL--RGCSGEISDIAIDN--RNILLAAGT 265 (1407)
Q Consensus 217 ~~LaTGS~DG~V~IWDl~t-g~~l~tl--~gH~~~ItsLafSp--Dg~lLaSgs 265 (1407)
..|.+|+..| +.+++... +..-..+ ......|.+|++.| .+.+++.+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~ 75 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR 75 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec
Confidence 4677787777 44454432 2222211 12345799999998 555555443
No 398
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=74.07 E-value=1.1 Score=43.97 Aligned_cols=41 Identities=7% Similarity=0.031 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhHhC---ccccccccccCCccccCCcccccCCC
Q psy6522 1101 ATCEKIITGLEEVMG---LSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1101 ~~c~r~~~~~~~~~~---~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
..|+.|+..|....+ -+++.||..||+...||+|..+|..-
T Consensus 11 ~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~P 54 (120)
T 3ljw_A 11 EILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEP 54 (120)
T ss_dssp HHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSC
T ss_pred HHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCC
Confidence 457777777766554 35699999999999999999999753
No 399
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=73.39 E-value=1.6 Score=49.67 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHhHhCccccccccccCCccccCCcccccCCCCC
Q psy6522 1107 ITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSSE 1143 (1407)
Q Consensus 1107 ~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~~ 1143 (1407)
...|++|+..+.+.||..|||...||+|..+|..--+
T Consensus 53 ~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmD 89 (292)
T 3aad_A 53 ESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMD 89 (292)
T ss_dssp HHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCC
T ss_pred HHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCC
Confidence 4456788899999999999999999999999976543
No 400
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=70.50 E-value=2.1 Score=45.09 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHHHHHhHhCccccccccccCCccccCCcccccCC
Q psy6522 1105 KIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDS 1140 (1407)
Q Consensus 1105 r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~ 1140 (1407)
++...|.+|+..+.+.||..|||++ ||.|..+|..
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~ 119 (184)
T 3o36_A 85 KCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKN 119 (184)
T ss_dssp HHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSS
T ss_pred HHHHHHHHHHhchhhhhhccccccC-CCchhhhcCC
Confidence 3444556777789999999999986 8999999874
No 401
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=72.70 E-value=0.93 Score=41.15 Aligned_cols=56 Identities=5% Similarity=0.176 Sum_probs=44.7
Q ss_pred hCCCCCCCeEEEEe-cCeEEEEEEcccCCCCCCCceeEEEEECCCCCCCCCCCCCCCCCCCC
Q psy6522 1006 AREWNVGDRFCSMI-DDAWWWGTIEGKPSPTKSPFLGYKILWDNNERENLSPWDLEPPKEGK 1066 (1407)
Q Consensus 1006 ~~~~~~g~rf~~~~-~~~~~~G~i~~~~~~p~s~w~~~~V~wd~~~~~~~SpW~~e~~~~~~ 1066 (1407)
--.|++||++-.+| |+.||-++|+++.. + ..|.|.++.+..|.+.+=+|-|++...
T Consensus 4 ~~~~kvGd~clAkwsDg~wY~A~I~~v~~--~---~~y~V~F~DGn~E~V~~s~LrPl~~~~ 60 (81)
T 2ldm_A 4 SSEFQINEQVLASWSDSRFYPAKVTAVNK--D---GTYTVKFYDGVVQTVKHIHVKAFSKDQ 60 (81)
Confidence 34799999999989 66799999999842 1 268999987888888888888885433
No 402
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=69.50 E-value=4 Score=33.90 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCC
Q psy6522 1008 EWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDL 1059 (1407)
Q Consensus 1008 ~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~ 1059 (1407)
.|++|+.+...| ||.||.++|.++.. +. ..+.|.+.. |..|.++.=+|
T Consensus 1 ~wk~G~~c~A~~s~Dg~wYrA~I~~i~~--~~--~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 1 MWKPGDECFALYWEDNKFYRAEVEALHS--SG--MTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEC----CC--SEEEEEETTTCCEEEEEGGGE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEeC--CC--CEEEEEEEccCCeEEEeHHHE
Confidence 499999999999 67899999998731 11 457788864 55555544333
No 403
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=67.87 E-value=3.3 Score=44.55 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=29.3
Q ss_pred HHHHHHHhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1105 KIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1105 r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
+....|.+|+..+.+.||..|||. .||.|..+|..-
T Consensus 85 ~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~P 120 (207)
T 3u5n_A 85 KCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKP 120 (207)
T ss_dssp HHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSC
T ss_pred HHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCc
Confidence 344556677788999999999998 799999998743
No 404
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=66.47 E-value=2.6 Score=47.18 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.4
Q ss_pred hhhHHHHHHHH--HhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1100 DATCEKIITGL--EEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1100 ~~~c~r~~~~~--~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
...|..|+..| ..|+..+.+.||..|||...||+|..+|.--
T Consensus 134 ~~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~P 177 (265)
T 3uv5_A 134 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNP 177 (265)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSC
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCc
Confidence 34566666553 3488889999999999999999999999743
No 405
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.78 E-value=1.9e+02 Score=33.00 Aligned_cols=250 Identities=11% Similarity=-0.009 Sum_probs=124.3
Q ss_pred ceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEec---cCC--
Q psy6522 304 FNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKM---DGV-- 378 (1407)
Q Consensus 304 ~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl---~~~-- 378 (1407)
...+++.+.+|.|+--.+..-.....-... .....+. ....+..+........|+.-+..|.++-... ...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g---~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r 78 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKG---VQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR 78 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC-----------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCC---ccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 367888899998886654332110000000 0000011 1133444444444555666666776555443 211
Q ss_pred -CCCce---eEEEeecCCCcceEEEcC---CCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCcccccccccccc
Q psy6522 379 -DSPLG---ILEVEEHSDKVDSIQWSH---SHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIK 451 (1407)
Q Consensus 379 -~~~~~---i~~l~~h~~~V~sIafSp---dg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 451 (1407)
..... +..+. ....|.++..-. +..+++..+.+|.++...+..-.... .......... ....
T Consensus 79 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~---------r~G~~~i~lk-e~D~ 147 (327)
T 3uc1_A 79 TARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR---------SGGIVAVNLR-DNDE 147 (327)
T ss_dssp SSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC---------SSCEESCBCC-TTCC
T ss_pred cCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc---------cCceEEEEEC-CCCE
Confidence 11111 11122 233455543333 46789999999999988765422100 0000111111 2334
Q ss_pred EEEEEECCCCCEEEEEEecCCeEEEEECC--C----Cc---eEEEEe-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q psy6522 452 VTMVAWDASDRWVITAINFNFQIKIWDAF--N----GD---LVQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWD 521 (1407)
Q Consensus 452 VtslafSpdg~~Lasgs~~DG~I~IWDl~--t----g~---~l~~l~-gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWD 521 (1407)
+..+........|+..+. .|.+..+... . +. -+..+. .....|.++...+ .+..|+.++..|.++.-.
T Consensus 148 lv~~~~~~~~d~ill~T~-~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~-~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 148 LVGAVLCSAGDDLLLVSA-NGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR-EGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp EEEEEEECTTCEEEEEET-TSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC-TTCEEEEEETTSEEEEEE
T ss_pred EEEEEEecCCCEEEEEEC-CCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC-CCCEEEEEeCCCcEEEEE
Confidence 444444445566777777 8988888776 2 11 111111 1234577766655 567899999999999988
Q ss_pred CCCCCc-----cceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCC
Q psy6522 522 ILSSKQ-----RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGG 573 (1407)
Q Consensus 522 i~sgk~-----~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~s 573 (1407)
+..-.. .-+..+. + ....+.+..+....+...|+..+..|.+.-+.+..
T Consensus 226 l~e~~~~~R~~~G~~~~~--l-~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 226 IEEYPVQGRGGKGVLTVM--Y-DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp GGGSCBCCTTSCCEESSC--C-CTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred HHHccccCcCCCcEEEEE--e-cCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 754311 1111111 0 01123354444444555666677778777777644
No 406
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.99 E-value=2e+02 Score=33.15 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCc--------e---EEEEecc-CCceEEEEeccCCCCCceEEEEEecCCc
Q psy6522 248 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLA--------P---ISVLVGH-QGIITGVNFCPLEVNGFNYLASTSTDGC 315 (1407)
Q Consensus 248 ~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~--------~---v~~l~~H-~~~VtsLafspd~~~~~~~LaSgs~DGt 315 (1407)
.+..++++.-....+.-..||.|..|-....- . ...+... ...|..|+... ...++...+|.
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~------~hs~alt~~G~ 179 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG------AHSACVTAAGD 179 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS------SEEEEEETTSC
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc------CeEEEEeCCCe
Confidence 45556777666677777889999999653210 0 1111111 12566666543 45566677999
Q ss_pred eeEEeecccccccee---eeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCC-------CceeE
Q psy6522 316 IGFWKYKLDIDISKT---VFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDS-------PLGIL 385 (1407)
Q Consensus 316 I~vWDl~t~~~~~~~---~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~-------~~~i~ 385 (1407)
|..|-......+... ....|.. ...+ ....|..++......+.++-..+|.|..|-...... .....
T Consensus 180 v~~wG~n~~GqLG~~~~~~~~~p~~-v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p 256 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSEDQLKPKL-VEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEE-CGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE
T ss_pred EEEeCCCCCCCcCCCCCcccccceE-eccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc
Confidence 999965432111100 0000100 0011 123466666654335566667888888886431111 00111
Q ss_pred -EEeec-CCCcceEEEcCCCCEEEEEeCCCeEEEEEcc
Q psy6522 386 -EVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 386 -~l~~h-~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~ 421 (1407)
.+... ...|..|+... ...++-..+|.|+.|=..
T Consensus 257 ~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 257 MKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp EECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred EEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 11111 11344554433 344555789999999543
No 407
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=64.83 E-value=2.9 Score=47.47 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=32.8
Q ss_pred hHHHHHHHH--HhHhCccccccccccCCccccCCcccccCCC
Q psy6522 1102 TCEKIITGL--EEVMGLSVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1102 ~c~r~~~~~--~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
.|..|+..+ .+|+..+.+.||..|||...||+|..+|..-
T Consensus 169 ~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~P 210 (292)
T 3aad_A 169 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNP 210 (292)
T ss_dssp HHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSC
T ss_pred HHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCc
Confidence 455666554 4588889999999999999999999999754
No 408
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=63.62 E-value=2e+02 Score=32.68 Aligned_cols=252 Identities=12% Similarity=0.014 Sum_probs=126.0
Q ss_pred CEEEEEECCCeEEEEeCCCC-------ceEEEEe-ccCCceEEEEeccCCCCCceEEEEEecCCceeEEeecccccccee
Q psy6522 259 ILLAAGTVDKTIRIWNLQTL-------APISVLV-GHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKT 330 (1407)
Q Consensus 259 ~lLaSgs~DGtIrVWDl~tg-------~~v~~l~-~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~ 330 (1407)
..+++.+.+|.|+--.+.+. +-+..+. ...+.+..+...... ..|+.-+..|.+.......-......
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~----d~ll~fT~~Gr~y~~~~~~lp~~~r~ 79 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTH----DLILFFTTQGRVYRAKAYDLPEASRT 79 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETT----SEEEEEETTSEEEEEEGGGSCBCCSS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCC----CEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 46777788888886554321 1111111 112334444333322 56666666675544332211111111
Q ss_pred eeccccccccccCCCCcceEEE-EECC--CCceEEEeeCCceEEEEeccCCCC----CceeEEEeecCCCcceEEEcCCC
Q psy6522 331 VFHEPVMFNERIRPGNAHILCS-SFSP--GGLFLATGSGDHHVRVYKMDGVDS----PLGILEVEEHSDKVDSIQWSHSH 403 (1407)
Q Consensus 331 ~~~~~~~~~~~~~~h~~~I~~v-afSp--dg~~Lasgs~DG~I~IwDl~~~~~----~~~i~~l~~h~~~V~sIafSpdg 403 (1407)
....+......+... ..|..+ .+.. +..++++.+.+|.|+-..+..... ......+.. .+.+..+......
T Consensus 80 ~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 80 ARGQHVANLLAFQPE-ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAG 157 (327)
T ss_dssp SCCEEHHHHTTCCTT-CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTT
T ss_pred CCCEEHHHccCCCCC-CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCC
Confidence 111111111122222 445444 4442 577899999999999988743221 111222333 3445555555555
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCCC-
Q psy6522 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFNG- 482 (1407)
Q Consensus 404 ~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg- 482 (1407)
..|+..+..|.+..+.....+... +.....+... ........|..+.....+.+|+..+. .|.++.-.+...
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~----~gr~a~Gv~~--i~L~~~d~Vv~~~~~~~~~~ll~~T~-~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRP----MGRATSGVQG--MRFNIDDRLLSLNVVREGTYLLVATS-GGYAKRTAIEEYP 230 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCC----CCTTSBCEES--SCCCTTCCEEEEEECCTTCEEEEEET-TSEEEEEEGGGSC
T ss_pred CEEEEEECCCeEEEEECcccccCc----CCcCCCCeee--ecCCCCCEEEEEEEECCCCEEEEEeC-CCcEEEEEHHHcc
Confidence 678888888988877665211100 0000011111 11123445666666566678888887 899988875421
Q ss_pred ------ceEEEEe--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 483 ------DLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 483 ------~~l~~l~--gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
+-+..++ .-.+.+..+.... +...++..+.+|.+.-+++..
T Consensus 231 ~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 231 VQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp BCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred ccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 2222222 2134455554444 455677778888888887754
No 409
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.74 E-value=2.2e+02 Score=32.08 Aligned_cols=199 Identities=13% Similarity=0.022 Sum_probs=110.2
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCcEE-------E--EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-------
Q psy6522 214 KLGEVIVTGADDLLIKLWRARDGKLL-------A--TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNLQT------- 277 (1407)
Q Consensus 214 pdG~~LaTGS~DG~V~IWDl~tg~~l-------~--tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t------- 277 (1407)
++..++++.+.+|.|+--.+...... . .++ -...+..+........|+..+..|.++-.....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45678899999999998877544221 1 122 223455555544555677777888876665421
Q ss_pred --CceE---EEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEE
Q psy6522 278 --LAPI---SVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 352 (1407)
Q Consensus 278 --g~~v---~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~v 352 (1407)
|.++ ..+. ....|.++...+.. ....+|+..+.+|.++...+..-.... ..... ...+.. ...+..+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~-~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~-~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDL-TDDAYLLLTTASGKIARFESTDFKAVK----SRGVI-VIKLND-KDFVTSA 156 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGCC--------CEE-CBCCCT-TCCEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccC-CCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEE-EEecCC-CCEEEEE
Confidence 1110 0111 12344444333210 123678888999999888765432111 01111 112222 3555555
Q ss_pred EECCCCceEEEeeCCceEEEEeccCC------CCCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEccC
Q psy6522 353 SFSPGGLFLATGSGDHHVRVYKMDGV------DSPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 353 afSpdg~~Lasgs~DG~I~IwDl~~~------~~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t 422 (1407)
....+...++..+.+|.+..+.+..- ........+.. ...|.++....++..|++.+..|.++...+..
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 55555667888889999998887421 11222223332 34566665555566788888999988887753
No 410
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=60.72 E-value=6.4 Score=33.35 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCCCCC
Q psy6522 1007 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1062 (1407)
Q Consensus 1007 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~e~~ 1062 (1407)
+.|++|+.+...| ||.||.++|+++.. + =..+.|.+.. |..|.|..=+|-|+
T Consensus 2 ~~~~~G~~c~A~~s~Dg~wYrA~I~~i~~--~--~~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDGCIYPATIASIDF--K--RETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCCTTCEEEEECTTTSCEEEEEEEEEET--T--TTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CcCCcCCEEEEEECCCCCEEEEEEEEEcC--C--CCEEEEEEEcCCCEEEEcHHHeeCC
Confidence 5799999999999 56799999998831 1 1468899875 66677766666665
No 411
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=60.27 E-value=2.3e+02 Score=32.17 Aligned_cols=252 Identities=11% Similarity=0.037 Sum_probs=125.4
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCc----eEEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceee
Q psy6522 256 NRNILLAAGTVDKTIRIWNLQTLA----PISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV 331 (1407)
Q Consensus 256 pDg~lLaSgs~DGtIrVWDl~tg~----~v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~ 331 (1407)
++..++++.+.+|.|+--.+...+ ....+..+ +.+..+..+... ..|+..+..|.+..+....-.......
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~----d~ll~fT~~Gr~~~~~~~elp~~~r~a 77 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTK----DVLLLFTNKGNYLYCPVHELPDIRWKD 77 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETT----SEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCC----CEEEEEECCCEEEEEEHHHCcCCCCCC
Confidence 556678888999999876553211 11112222 234344443322 677777777876554433211111111
Q ss_pred eccccccccccCCCCcceEEE-EECC--CCceEEEeeCCceEEEEeccCCC-----CCceeEEEeecCCCcceEEEcCCC
Q psy6522 332 FHEPVMFNERIRPGNAHILCS-SFSP--GGLFLATGSGDHHVRVYKMDGVD-----SPLGILEVEEHSDKVDSIQWSHSH 403 (1407)
Q Consensus 332 ~~~~~~~~~~~~~h~~~I~~v-afSp--dg~~Lasgs~DG~I~IwDl~~~~-----~~~~i~~l~~h~~~V~sIafSpdg 403 (1407)
...+......+... ..|.++ .+.. ++.+|+..+.+|.++-..+.... .......+.. .+.+..+......
T Consensus 78 ~G~~i~~~i~L~~~-e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~ 155 (323)
T 1wp5_A 78 LGQHIANIIPIDRD-EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGM 155 (323)
T ss_dssp CCEEGGGTSCCCTT-CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSC
T ss_pred CCcChhhccCCCCC-CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCC
Confidence 11111111122222 345544 4432 25678899999999998874221 1122222332 2455555555555
Q ss_pred CEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCC-EEEEEEecCCeEEEEECCC-
Q psy6522 404 LRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDR-WVITAINFNFQIKIWDAFN- 481 (1407)
Q Consensus 404 ~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~-~Lasgs~~DG~I~IWDl~t- 481 (1407)
..|+..+.+|.+..+....-. .+.....+... .. ......|..+..-.++. .|++.+. .|..+..++..
T Consensus 156 ~~i~l~T~~G~~irf~~~ev~------~~gR~a~GV~~-i~-L~~~d~Vv~~~~~~~~~~~ll~vt~-~G~gKr~~~~e~ 226 (323)
T 1wp5_A 156 NELFLVTHNGYALWFDESEVS------IVGVRAAGVKG-MN-LKEGDYIVSGQLITSKDESIVVATQ-RGAVKKMKLTEF 226 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSC------BCCSSCCCEEC-CC-CCTTCCEEEEEEECCTTCEEEEEET-TSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHCc------ccCCCCcCEEE-EE-eCCCCEEEEEEEEcCCCcEEEEEEC-CCceEEEEHHHc
Confidence 678888889988888765311 01110111111 11 12234455554333344 6777776 88888777643
Q ss_pred ------CceEEEEe---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 482 ------GDLVQVLK---GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 482 ------g~~l~~l~---gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
++-+..++ .....+..+.... +...++..+..|.+....+..
T Consensus 227 ~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 227 EKATRAKRGVVILRELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCCTTSCCEECSCCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGGG
T ss_pred cccCCCCCCEECeeecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhhh
Confidence 22222222 2222454333333 345667777888877777643
No 412
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=58.92 E-value=3.6e+02 Score=34.06 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=32.1
Q ss_pred CEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcCC
Q psy6522 206 AVFCVLFDKLG-EVIVTGADDLLIKLWRARDGKLLATLRGC-------SGEISDIAIDNR 257 (1407)
Q Consensus 206 ~V~~vafSpdG-~~LaTGS~DG~V~IWDl~tg~~l~tl~gH-------~~~ItsLafSpD 257 (1407)
.|.+|+|+|.. ..|+++...+.|..++ +.|+.-..+..+ ...|.+|+++|.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~ 82 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPV 82 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCC
Confidence 78999999973 4566676566655554 334433333322 246999999983
No 413
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=58.86 E-value=2.2e+02 Score=31.50 Aligned_cols=206 Identities=11% Similarity=-0.050 Sum_probs=108.1
Q ss_pred cceEEEEECCCCceEEEeeCCceEEEE---eccCCCCCceeEEEeecCCCcceEEEcC-CCCEEEEEeCCCeEEEEEccC
Q psy6522 347 AHILCSSFSPGGLFLATGSGDHHVRVY---KMDGVDSPLGILEVEEHSDKVDSIQWSH-SHLRFVSGSRDGTALIWYYKC 422 (1407)
Q Consensus 347 ~~I~~vafSpdg~~Lasgs~DG~I~Iw---Dl~~~~~~~~i~~l~~h~~~V~sIafSp-dg~~LaSgs~DGtI~IWDl~t 422 (1407)
..+..+........|+.-++.|.++-. ++.... ...+ +. ....|..+.... +..+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~-~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS-KVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE-ECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc-cccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 344444444444556666677766543 332111 0111 22 244565554321 456899999999999987654
Q ss_pred CceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC---------CceEEEEecCCC
Q psy6522 423 SQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN---------GDLVQVLKGHTN 493 (1407)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t---------g~~l~~l~gH~~ 493 (1407)
-. .. ..+ ..... ......+..+........|+..+. .|.+..+.... |.....|.. ..
T Consensus 100 ~~-~~--------~~G-~~~i~-lkegD~l~~~~~~~~~~~ill~T~-~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d 166 (276)
T 3no0_A 100 FE-YK--------AQG-MPIIK-LTEGDEVVSIASSVDETHILLFTK-KGRVARFSVREVPPSTPGARGVQGIKLEK-ND 166 (276)
T ss_dssp TT-TC--------STT-EECSC-CCTTCCEEEEEECCSSCEEEEEET-TSEEEEEEGGGSCBCCTTCCCEECCCCCT-TC
T ss_pred hh-hh--------cCC-eEEEe-cCCCCEEEEEEEeCCCCEEEEEEC-CCEEEEEEhhhCCCcCCCCCCEEEEccCC-CC
Confidence 32 00 000 00111 112345555555555667777777 89888887532 212112222 34
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCccce--eeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEE--E
Q psy6522 494 EVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQRGY--KWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLV--Y 569 (1407)
Q Consensus 494 ~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~~~l--~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~I--w 569 (1407)
.|..+.... ++..|+..+..|.++...+..-....- .-...+ ...+.+..+....+...|+..+.+|.+.. +
T Consensus 167 ~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~ 242 (276)
T 3no0_A 167 ETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKI 242 (276)
T ss_dssp CEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeee
Confidence 566665555 567899999999999998754311100 001111 12234444433334456666777777777 7
Q ss_pred EcCC
Q psy6522 570 GLGG 573 (1407)
Q Consensus 570 dl~s 573 (1407)
++..
T Consensus 243 ~~~~ 246 (276)
T 3no0_A 243 NQKD 246 (276)
T ss_dssp EGGG
T ss_pred CHHH
Confidence 6543
No 414
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=58.60 E-value=6.9 Score=33.76 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=40.2
Q ss_pred hCCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCCCCCC
Q psy6522 1006 AREWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPPK 1063 (1407)
Q Consensus 1006 ~~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~e~~~ 1063 (1407)
...|++||.|...| ||.||.++|.++.. +. ..+.|.+.. |..|.++.=+|-|++
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~--~~--~~~~V~fvdYGn~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDE--EN--GTAAITFAGYGNAEVTPLLNLKPVE 62 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEET--TT--TEEEEEETTTTEEEEEEGGGEECCS
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcC--CC--CEEEEEEEecCCEEEEeHHHcEeCC
Confidence 46899999999999 56799999999841 11 257899875 566777666666663
No 415
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}
Probab=58.48 E-value=4.6 Score=48.88 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=49.1
Q ss_pred CeeeEeeCCCCCCCCcC--CCCcccC-CCCccCCCCCceEEeCCCCCCC-----------CCccccccCCCCCcEEEeec
Q psy6522 599 LFEPTYDEVTNLPPHLM--PPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPDITTNDDGHVEIVEG 664 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~~~~~--p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~~~l~~dg~v~liEg 664 (1407)
++++|+|+.... ..|. .+||... .+|..| |||++|+ ..|......-.+ +.|++++
T Consensus 93 ~l~~H~D~vp~~-~~w~~~~~Pf~~~~~~g~~~---------grG~~D~K~~~a~~l~a~~~l~~~~~~~~~-v~~~~~~ 161 (472)
T 3pfe_A 93 LLYGHLDKQPEM-SGWSDDLHPWKPVLKNGLLY---------GRGGADDGYSAYASLTAIRALEQQGLPYPR-CILIIEA 161 (472)
T ss_dssp EEEEECCBCCCC-SCCCTTCBTTBCEEETTEEE---------STTCCCCCHHHHHHHHHHHHHHHTTCCCEE-EEEEEES
T ss_pred EEEccccCCCCc-CCCCcCCCCCceEEECCEEE---------EeCcccCcHHHHHHHHHHHHHHHcCCCCCc-EEEEEEe
Confidence 456688877653 4566 6777765 677777 9999997 122222111124 8899999
Q ss_pred ccccCCCchHHHhhhhhc
Q psy6522 665 SERNGERPVEVEGQRHYN 682 (1407)
Q Consensus 665 ~ee~gs~gf~~~~~~~~~ 682 (1407)
.||.|+.|....+.++++
T Consensus 162 ~EE~g~~g~~~~~~~~~~ 179 (472)
T 3pfe_A 162 CEESGSYDLPFYIELLKE 179 (472)
T ss_dssp CGGGTSTTHHHHHHHHHH
T ss_pred CCCCCChhHHHHHHHhHh
Confidence 999999997766665543
No 416
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=57.42 E-value=4.3 Score=47.51 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=40.3
Q ss_pred CCCCCCCchhhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCCCC
Q psy6522 1092 DEWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSSE 1143 (1407)
Q Consensus 1092 ~~w~~~~~~~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~~ 1143 (1407)
.+|.-..-..-|+.|+..|..-. -+++.||..||+...||+|..+|..--+
T Consensus 72 ~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~F~~p~~~~~~PdY~~iIk~Pmd 122 (361)
T 2r10_A 72 DDWHIPKFNRFISFTLDVLIDKY-KDIFKDFIKLPSRKFHPQYYYKIQQPMS 122 (361)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHT-HHHHGGGSSCCCTTTCTTHHHHCSSCCC
T ss_pred hhhcchHHHHHHHHHHHHHHHcC-CcccHHhcCCCCcccCCChHhhcCCCcC
Confidence 37766666778988887664432 3689999999999999999999986554
No 417
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=56.82 E-value=8.8 Score=34.47 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=40.3
Q ss_pred CCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCCCCC
Q psy6522 1007 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPP 1062 (1407)
Q Consensus 1007 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~e~~ 1062 (1407)
..|++|+.+...| ||.||.++|.++.. .. ..+.|.+.. |..+.+..=+|-|+
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~--~~--~~~~V~fvDYGN~e~V~~~~Lr~l 70 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHS--SG--MTAVVKFIDYGNYEEVLLSNIKPI 70 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECT--TS--SEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeC--CC--CEEEEEEEcCCCeEEEeHHHeEEC
Confidence 4899999999999 77899999998831 11 467899865 66777776677666
No 418
>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A
Probab=56.32 E-value=5.9 Score=48.24 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=50.4
Q ss_pred CeeeEeeCCCCCCCCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC----------CCccccc--cCCCCCcEEEeecc
Q psy6522 599 LFEPTYDEVTNLPPHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD----------TELLPDI--TTNDDGHVEIVEGS 665 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn----------~~L~~~~--~l~~dg~v~liEg~ 665 (1407)
++++|+|+..... .|..+||... .+|..| |||.+|+ ...+.+. .+..+ +.|++...
T Consensus 103 ~l~~H~D~vp~~~-~w~~~Pf~~~~~~g~l~---------GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~-i~~~~~~~ 171 (492)
T 3khx_A 103 GILCHVDVVPAGD-GWDSNPFEPVVTEDAII---------ARGTLDDKGPTIAAYYAIKILEDMNVDWKKR-IHMIIGTD 171 (492)
T ss_dssp EEEEECCCCCCCS-CCSSCTTSCEECSSEEE---------STTTTTTHHHHHHHHHHHHHHHHTTCCCSSE-EEEEEECC
T ss_pred EEEEeccCCCCCC-CcccCCCceEEECCEEE---------ecCCccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEEECC
Confidence 3567999876633 6888888765 677777 9999998 1112222 23334 78999999
Q ss_pred cccCCCchHHHhhhhh
Q psy6522 666 ERNGERPVEVEGQRHY 681 (1407)
Q Consensus 666 ee~gs~gf~~~~~~~~ 681 (1407)
||.|+.|....+.++.
T Consensus 172 EE~g~~g~~~~~~~~~ 187 (492)
T 3khx_A 172 EESDWKCTDRYFKTEE 187 (492)
T ss_dssp TTCCCCTTSHHHHHSC
T ss_pred ccCCCcCHHHHHHhCc
Confidence 9999999876665554
No 419
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.48 E-value=2.9e+02 Score=31.95 Aligned_cols=156 Identities=12% Similarity=-0.021 Sum_probs=88.8
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCC---------CcEEEEEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEe---CCC--
Q psy6522 212 FDKLGEVIVTGADDLLIKLWRARD---------GKLLATLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWN---LQT-- 277 (1407)
Q Consensus 212 fSpdG~~LaTGS~DG~V~IWDl~t---------g~~l~tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWD---l~t-- 277 (1407)
+-|+..++++.+.+|.|+=-.+.+ |.....++ ....+..+........|+..+..|.+.-+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999866532 22223333 345666666655666677677788766554 321
Q ss_pred ----CceEEE---EeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceE
Q psy6522 278 ----LAPISV---LVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHIL 350 (1407)
Q Consensus 278 ----g~~v~~---l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~ 350 (1407)
|.++.. +. ....|.++....+. ....+|+.++..|.++-..+..-..... ... ....+.. ...+.
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~-~~~~~ll~~T~~G~vKrt~l~e~~~~~~----~G~-~ai~L~~-~d~lv 153 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREY-ADNRYVFMATRNGTVKKTPLSEFAFRLA----RGK-IAINLDE-GDALV 153 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGCSCCT----TCE-ESSCCCT-TCCEE
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccC-CCCcEEEEEeCCCeEEEeEHHHhhcccC----Cce-EEEEeCC-CCEEE
Confidence 222211 22 23455555443211 1236899999999999887654422110 111 1112222 24455
Q ss_pred EEEECCCCceEEEeeCCceEEEEecc
Q psy6522 351 CSSFSPGGLFLATGSGDHHVRVYKMD 376 (1407)
Q Consensus 351 ~vafSpdg~~Lasgs~DG~I~IwDl~ 376 (1407)
.+....+...|+..+.+|.+..+...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 55555555677788888888888763
No 420
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.95 E-value=97 Score=41.66 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=31.7
Q ss_pred cEEEEEECCCCCEEEEEEecCCeEEEEECCCCceEEEEe
Q psy6522 451 KVTMVAWDASDRWVITAINFNFQIKIWDAFNGDLVQVLK 489 (1407)
Q Consensus 451 ~VtslafSpdg~~Lasgs~~DG~I~IWDl~tg~~l~~l~ 489 (1407)
.+.+++...+..++++-+. |++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~-D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSL-DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBT-TCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeC-CCEEEEEECCCCCeEEeec
Confidence 4455666778889999988 9999999999999988754
No 421
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=54.68 E-value=8.6 Score=35.50 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=41.6
Q ss_pred HhCCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCCCCCC
Q psy6522 1005 IAREWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPPK 1063 (1407)
Q Consensus 1005 ~~~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~e~~~ 1063 (1407)
-...|++||.|...| ||.||.++|.++..- . ..+.|.+.. |..|.|..=+|-|++
T Consensus 7 ~~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~--~--~~~~V~fiDYGN~E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 7 SLQQWKVGDKCSAIWSEDGCIYPATIASIDFK--R--ETCVVVYTGYGNREEQNLSDLLSPI 64 (88)
T ss_dssp --CCCCSSCEEEEECTTTCCEEEEEEEEEETT--T--TEEEEEETTTCCEEEEEGGGCBCCC
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEEEEecCC--C--CEEEEEEecCCCEEEEcHHHcccCC
Confidence 346899999999999 667999999998321 1 467899875 677778777787773
No 422
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=54.31 E-value=2.8 Score=41.98 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=1.9
Q ss_pred chhhHhhccchhhHhhhcCCC
Q psy6522 1265 SEEEEVEENSEEEEEEEAVPR 1285 (1407)
Q Consensus 1265 ~~~~~~~~~~~~~~~~~~~~~ 1285 (1407)
+++++++|++||||||+.|-.
T Consensus 56 ~eeeeeeeeeeeeeEEE~vDP 76 (146)
T 3cx5_F 56 DEDDDDDDDEDEEEEEEVTDQ 76 (146)
T ss_dssp -----------------CCCH
T ss_pred cccccccccccccccccccCh
Confidence 333444444444555555543
No 423
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=53.96 E-value=4.8 Score=46.04 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.5
Q ss_pred ccccccccccCCccccCCcccccCCCC
Q psy6522 1116 LSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1116 ~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
.+++.||..|||...||+|..+|..--
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PM 204 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPM 204 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCC
T ss_pred CccHHHHhCCCChhhcccHHHHhCCcc
Confidence 358999999999999999999997543
No 424
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=52.86 E-value=5.1 Score=46.88 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.8
Q ss_pred cccccccccCCccccCCcccccCCC
Q psy6522 1117 SVAEPFLVPVDISSLSEENSHSDSS 1141 (1407)
Q Consensus 1117 ~~~~~f~~pv~l~~yp~y~~~~~~~ 1141 (1407)
+++.||..|||...||+|..+|..-
T Consensus 229 ~~s~~F~~pvd~~~~PdY~~iIk~P 253 (361)
T 2r10_A 229 KLSEPFMELVDKDELPEYYEIVHSP 253 (361)
T ss_dssp CTTGGGSSCCCTTTCTHHHHHCSSC
T ss_pred cchhcccCCCChhhcccHHHHhcCc
Confidence 6899999999999999999999754
No 425
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4
Probab=47.31 E-value=13 Score=39.29 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=44.0
Q ss_pred eeeEeeCCCCCCCCcCCCCcccCC--CCccCCCCCceEEeCCCCCCC-----------CCccccc-cCCCCCcEEEeecc
Q psy6522 600 FEPTYDEVTNLPPHLMPPPFLVDL--NGTPYPPEVQRLVPGRENADD-----------TELLPDI-TTNDDGHVEIVEGS 665 (1407)
Q Consensus 600 ~~~v~Dv~T~~~~~~~p~pfl~d~--~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~~-~l~~dg~v~liEg~ 665 (1407)
+++|+|+.......|..+||...+ +|..| |||..|+ ..|.... .+..+ +.+++...
T Consensus 77 l~aH~DtVp~~~~~w~~~pf~~~~~~~g~l~---------GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~-v~~~~~~~ 146 (198)
T 1q7l_A 77 LNSHTDVVPVFKEHWSHDPFEAFKDSEGYIY---------ARGAQDMKCVSIQYLEAVRRLKVEGHRFPRT-IHMTFVPD 146 (198)
T ss_dssp EEEECCBCCCCGGGCSSCTTTCCBCTTSEEE---------CTTTTTTHHHHHHHHHHHHHHHHTTCCCSSC-EEEEEESC
T ss_pred EEeeecccCCCcccCccCCCeeeEccCCEEE---------eCcchhchHHHHHHHHHHHHHHHcCCCCCCC-EEEEEEcc
Confidence 456888876543357666765443 55555 9999998 1222221 23344 88999999
Q ss_pred cccC-CCchHHHhhh
Q psy6522 666 ERNG-ERPVEVEGQR 679 (1407)
Q Consensus 666 ee~g-s~gf~~~~~~ 679 (1407)
||.| ..|....+.+
T Consensus 147 EE~g~~~Ga~~~~~~ 161 (198)
T 1q7l_A 147 EEVGGHQGMELFVQR 161 (198)
T ss_dssp GGGTSTTTHHHHTTS
T ss_pred cccCccccHHHHHHh
Confidence 9998 5786555443
No 426
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=46.35 E-value=4.1e+02 Score=30.93 Aligned_cols=164 Identities=9% Similarity=-0.003 Sum_probs=85.1
Q ss_pred CCcceEEEc---CC----CCEEEEE-eCCCeEEEEEccCCceEEeeeccCcCCCCCccccccc----cccccEEEEEECC
Q psy6522 392 DKVDSIQWS---HS----HLRFVSG-SRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDET----NKKIKVTMVAWDA 459 (1407)
Q Consensus 392 ~~V~sIafS---pd----g~~LaSg-s~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~VtslafSp 459 (1407)
..+..|.+. +. +.+++.+ +..+.|.++|+.+++...+.... ..+......... .....+..++++|
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--FKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--GSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--CccccCcceEECCEEeEeccCceEEEecC
Confidence 346667776 22 2333333 35678999999998765544211 111100000001 1235789999999
Q ss_pred C----CCEEEEEEecCCeEEEEE---CCCC---ceEEEEe--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC-C-
Q psy6522 460 S----DRWVITAINFNFQIKIWD---AFNG---DLVQVLK--GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS-S- 525 (1407)
Q Consensus 460 d----g~~Lasgs~~DG~I~IWD---l~tg---~~l~~l~--gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s-g- 525 (1407)
+ ++.|+........++-.. +++. ..+..+- +....-..+++.+.+|.++++--....|..|+..+ .
T Consensus 230 ~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~ 309 (381)
T 3q6k_A 230 RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPL 309 (381)
T ss_dssp CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSB
T ss_pred CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcc
Confidence 8 788888776233343333 1122 1122221 11123345566533677777777888999999875 2
Q ss_pred CccceeeeeeeecCCCCCceeEEEECCCCCEEEEE
Q psy6522 526 KQRGYKWFHNIVEGQGEGALFDGKWSPDGTTCALT 560 (1407)
Q Consensus 526 k~~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsg 560 (1407)
+......+ .....-..+.++++..+|.+.+.+
T Consensus 310 ~~~n~~~l---~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 310 RMKNTDVV---YTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CGGGEEEE---EECTTCCSEEEEEECTTSCEEEEE
T ss_pred ccCceEEE---EECCCccccCeEEECCCCeEEEEE
Confidence 00112222 122223356667776666544444
No 427
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.65 E-value=36 Score=45.88 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEe
Q psy6522 248 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLV 285 (1407)
Q Consensus 248 ~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~ 285 (1407)
.|.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 55667777888999999999999999999999988754
No 428
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.73 E-value=12 Score=37.17 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=25.6
Q ss_pred HHHHHhHhCccccccccccCCccccCCcccccCCCC
Q psy6522 1107 ITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSS 1142 (1407)
Q Consensus 1107 ~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~ 1142 (1407)
...|++|+..+.+.||..| ||+|..+|..--
T Consensus 18 ~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~Pm 48 (131)
T 2dkw_A 18 RDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPM 48 (131)
T ss_dssp HHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCC
T ss_pred HHHHHHHHhCccchhhcCc-----CccHHhHcCCCc
Confidence 4456778888999999999 999999997543
No 429
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=42.35 E-value=5.6 Score=47.36 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=2.4
Q ss_pred hhhHhhhcCCCCCcccch
Q psy6522 1275 EEEEEEEAVPRRRPVRRA 1292 (1407)
Q Consensus 1275 ~~~~~~~~~~~~~~~~~~ 1292 (1407)
+-+++....|+|++.||.
T Consensus 386 ~~~~~~~~~~~~~~~~~~ 403 (420)
T 1so2_A 386 EMENNLNPKPPRRKSRRR 403 (420)
T ss_dssp --------------CCSS
T ss_pred hhhcccCcccccccccch
Confidence 334444556667776664
No 430
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.12 E-value=2.4e+02 Score=35.81 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEeCCCCceEEEEec
Q psy6522 248 EISDIAIDNRNILLAAGTVDKTIRIWNLQTLAPISVLVG 286 (1407)
Q Consensus 248 ~ItsLafSpDg~lLaSgs~DGtIrVWDl~tg~~v~~l~~ 286 (1407)
.|.++.+ +..+|++-+.|+++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 467999999999999999999998887654
No 431
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=34.30 E-value=11 Score=39.89 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhHhCccccccccccCCccccCCcccccC
Q psy6522 1102 TCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSD 1139 (1407)
Q Consensus 1102 ~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~ 1139 (1407)
.|++| |++|+..+.+.||..||| |.|..+|.
T Consensus 80 ~c~~i---L~~l~~~~~s~pF~~pV~----~~Yy~iIk 110 (189)
T 2ro1_A 80 KCERV---LLALFCHEPCRPLHQLAT----DSTFSLDQ 110 (189)
T ss_dssp HHHHH---HHHHHHSTTHHHHHSCSC----CTTCSSSC
T ss_pred HHHHH---HhhcccCccchhhcCCCC----hhhhcccc
Confidence 47666 556667889999999999 77777763
No 432
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=32.70 E-value=87 Score=38.90 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=43.6
Q ss_pred CEEEEEEcCCCCEEEEEECC------------CeEEEEEcCCCcEEEEEeCC-CCCeEEEEEcCCCCEEEEE
Q psy6522 206 AVFCVLFDKLGEVIVTGADD------------LLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAG 264 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~D------------G~V~IWDl~tg~~l~tl~gH-~~~ItsLafSpDg~lLaSg 264 (1407)
..--|+|+|.|++++.-..+ ..+.+.+..++++...+.++ .++++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34668999999866654322 24566677788887777765 4689999999999888765
No 433
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=32.12 E-value=33 Score=30.73 Aligned_cols=54 Identities=15% Similarity=0.356 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEECC-CCCCCCCCCCCCCCCC
Q psy6522 1007 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILWDN-NERENLSPWDLEPPKE 1064 (1407)
Q Consensus 1007 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~wd~-~~~~~~SpW~~e~~~~ 1064 (1407)
..|++|+.+...| |+.||-++|+.+.. + =..+.|.+-. |..|.|..=+|-|+++
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~--~--~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS--S--GMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS--S--SSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC--C--CCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 4799999999999 67899999998831 1 1467899864 6667666666766643
No 434
>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}
Probab=30.55 E-value=24 Score=42.61 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=48.3
Q ss_pred CeeeEeeCCCCCC-CCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC----------CCccccc--cCCCCCcEEEeec
Q psy6522 599 LFEPTYDEVTNLP-PHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD----------TELLPDI--TTNDDGHVEIVEG 664 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~-~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn----------~~L~~~~--~l~~dg~v~liEg 664 (1407)
++++|+|+..... ..|..+||... .+|..| |||.+|+ ...+... .+..+ +.|++..
T Consensus 106 ~l~aH~D~vp~~~~~~w~~~Pf~~~~~~g~l~---------grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~-v~~~~~~ 175 (485)
T 3dlj_A 106 CFYGHLDVQPADRGDGWLTDPYVLTEVDGKLY---------GRGATDNKGPVLAWINAVSAFRALEQDLPVN-IKFIIEG 175 (485)
T ss_dssp EEEEECCBCCCCGGGTCSSCTTSCEEETTEEE---------STTTTTTHHHHHHHHHHHHHHHHTTCCCSSE-EEEEEES
T ss_pred EEEeeecCCCCCCcccCCCCCCccEEECCEEE---------ecccccCcHHHHHHHHHHHHHHHhCCCCCcc-EEEEEEc
Confidence 3456889875432 24777888765 577777 9999998 1122222 23334 7889999
Q ss_pred ccccCCCchHHHhhhhh
Q psy6522 665 SERNGERPVEVEGQRHY 681 (1407)
Q Consensus 665 ~ee~gs~gf~~~~~~~~ 681 (1407)
.||.|+.|....+.+..
T Consensus 176 ~EE~g~~g~~~~~~~~~ 192 (485)
T 3dlj_A 176 MEEAGSVALEELVEKEK 192 (485)
T ss_dssp CGGGTTTTHHHHHHHHT
T ss_pred ccccCCccHHHHHHhhh
Confidence 99999988766665543
No 435
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=30.42 E-value=6.3e+02 Score=28.44 Aligned_cols=206 Identities=10% Similarity=0.084 Sum_probs=103.3
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcC---------CCcEEE---EEeCCCCCeEEE-EEcC--CCCEEEEEECCCeE
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRAR---------DGKLLA---TLRGCSGEISDI-AIDN--RNILLAAGTVDKTI 270 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~---------tg~~l~---tl~gH~~~ItsL-afSp--Dg~lLaSgs~DGtI 270 (1407)
.+..+........|+..+..|.+.-+... .|..+. .+. ....|.++ .+.. ++.+|+.++.+|.+
T Consensus 40 ~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 40 RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 34444444445566777778876655542 122111 122 22345554 3332 36688899999999
Q ss_pred EEEeCCCC------ceEE--EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccccc
Q psy6522 271 RIWNLQTL------APIS--VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERI 342 (1407)
Q Consensus 271 rVWDl~tg------~~v~--~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~ 342 (1407)
+-..+... .-+. .+... +.+..+..... ...|+..+.+|.+..+....-...... ..... ...+
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~----~~~i~l~T~~G~~irf~~~ev~~~gR~--a~GV~-~i~L 190 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDG----MNELFLVTHNGYALWFDESEVSIVGVR--AAGVK-GMNL 190 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECS----CSEEEEEETTSEEEEEEGGGSCBCCSS--CCCEE-CCCC
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCC----CCEEEEEeCCCcEEEEEHHHCcccCCC--CcCEE-EEEe
Confidence 99887421 1222 22222 45555554432 256788888898888876542111110 11111 1112
Q ss_pred CCCCcceEEEEECCCCc-eEEEeeCCceEEEEeccCCC----CCceeEE---EeecCCCcceEEEcCCCCEEEEEeCCCe
Q psy6522 343 RPGNAHILCSSFSPGGL-FLATGSGDHHVRVYKMDGVD----SPLGILE---VEEHSDKVDSIQWSHSHLRFVSGSRDGT 414 (1407)
Q Consensus 343 ~~h~~~I~~vafSpdg~-~Lasgs~DG~I~IwDl~~~~----~~~~i~~---l~~h~~~V~sIafSpdg~~LaSgs~DGt 414 (1407)
.. ...|.++...+++. .|++.+..|..+..++..-. ...-+.. +......+..+....++..++..+..|.
T Consensus 191 ~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~ 269 (323)
T 1wp5_A 191 KE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSF 269 (323)
T ss_dssp CT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSC
T ss_pred CC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCe
Confidence 22 24566654444444 68888888888888774211 0111111 1111223443333333445556666776
Q ss_pred EEEEEcc
Q psy6522 415 ALIWYYK 421 (1407)
Q Consensus 415 I~IWDl~ 421 (1407)
+....+.
T Consensus 270 ~ir~~~~ 276 (323)
T 1wp5_A 270 IETIKVG 276 (323)
T ss_dssp EEEEEGG
T ss_pred EEEEEhh
Confidence 6555544
No 436
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=28.25 E-value=18 Score=41.19 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=33.9
Q ss_pred CCCCCCchhhHHHHHHHHHhHhCccccccccccCCccccCCcccccCCCCC
Q psy6522 1093 EWPQGDRDATCEKIITGLEEVMGLSVAEPFLVPVDISSLSEENSHSDSSSE 1143 (1407)
Q Consensus 1093 ~w~~~~~~~~c~r~~~~~~~~~~~~~~~~f~~pv~l~~yp~y~~~~~~~~~ 1143 (1407)
+|-.---...|..+|..+-. -.-+++.||..||+...||+|..+|..--+
T Consensus 23 ~~~~p~~~~~~~~~L~~~~~-~~r~~~~~F~~p~~~~~~PdY~~iIk~PmD 72 (311)
T 2r0y_A 23 DWHIPKFNRFISFTLDVLID-KYKDIFKDFIKLPSRKFHPQYYYKIQQPMS 72 (311)
T ss_dssp CCCCTTHHHHHHHHHHHHHH-HSHHHHGGGSSCCCTTTCHHHHHHCSSCCC
T ss_pred hhhchHHHHHHHHHHHHHHH-cCCchhHHhcCCCCcccCCChHHHcCCCCC
Confidence 45433334455444443333 123689999999999999999999986544
No 437
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.03 E-value=7.4e+02 Score=28.47 Aligned_cols=292 Identities=10% Similarity=0.070 Sum_probs=129.7
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCC-Cc----------EEEEEeC-CCCCeEEEEEcCCCCEEEEEECC-CeEEE
Q psy6522 206 AVFCVLFDKLGEVIVTGADDLLIKLWRARD-GK----------LLATLRG-CSGEISDIAIDNRNILLAAGTVD-KTIRI 272 (1407)
Q Consensus 206 ~V~~vafSpdG~~LaTGS~DG~V~IWDl~t-g~----------~l~tl~g-H~~~ItsLafSpDg~lLaSgs~D-GtIrV 272 (1407)
.|..|+.. +...++-..||.|..|=... ++ ....+.. ....|..++...+ ..+.-..+ +.|..
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEEE
Confidence 45555554 23444455677777775432 11 1111111 1235766665543 33333445 48999
Q ss_pred EeCCCC--------ceEE---EEec-cCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceee---eccccc
Q psy6522 273 WNLQTL--------APIS---VLVG-HQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTV---FHEPVM 337 (1407)
Q Consensus 273 WDl~tg--------~~v~---~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~---~~~~~~ 337 (1407)
|-.... .... .+.. ....|..|+.-. ...+....+|.|..|-......+..-. ...|..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~------~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 166 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD------SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQK 166 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS------SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh------hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceE
Confidence 964321 1111 1111 122566666543 455666788999999655432111000 000100
Q ss_pred cccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC-------ceeE-EEee-cCCCcceEEEcCCCCEEEE
Q psy6522 338 FNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------LGIL-EVEE-HSDKVDSIQWSHSHLRFVS 408 (1407)
Q Consensus 338 ~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~-------~~i~-~l~~-h~~~V~sIafSpdg~~LaS 408 (1407)
. ..+ ....|..++.. ..+.++-..+|.|+.|-....... .... .+.. ....|..|+... ...+.
T Consensus 167 v-~~~--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~ 239 (406)
T 4d9s_A 167 I-QAF--EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTIS 239 (406)
T ss_dssp C-GGG--TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEE
T ss_pred e-ccc--CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEE
Confidence 0 001 11245555553 345555567888888865321110 0011 1111 112344554433 34555
Q ss_pred EeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCCCCEEEEEEecCCeEEEEECCC-Cce---
Q psy6522 409 GSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDASDRWVITAINFNFQIKIWDAFN-GDL--- 484 (1407)
Q Consensus 409 gs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpdg~~Lasgs~~DG~I~IWDl~t-g~~--- 484 (1407)
-..+|.|+.|-....... .....................|..++.. ..+.++-.. +|.|+.|-... +++
T Consensus 240 l~~~G~v~~wG~n~~Gql----G~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~-~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQL----GHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTS-DGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp EETTCCEEEEECCTTSTT----CSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEET-TSCEEEEECCTTSTTCSS
T ss_pred EcCCCCEEEeeCCCCCCC----CCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcC-CCeEEEeeCCCCCCCCCC
Confidence 568899999964322100 0000000000000001112335555543 333344444 88999996543 111
Q ss_pred -------EEEEe-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q psy6522 485 -------VQVLK-GHTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILS 524 (1407)
Q Consensus 485 -------l~~l~-gH~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~s 524 (1407)
...+. .....|..|+... ...+.-..||.|+.|-...
T Consensus 313 ~~~~~~~p~~v~~~~~~~v~~va~G~---~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 313 NNLDQCSPVQVRFPDDQKVVQVSCGW---RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp SSSCEEEEEEECCGGGCCEEEEEECS---SEEEEEETTSCEEEEECCT
T ss_pred CCCCCccCEEEeccCCCcEEEEEeCC---CeEEEEeCCCCEEEecCCC
Confidence 01111 1223455555432 4455556788888887543
No 438
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.94 E-value=1.6e+02 Score=36.44 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCEEEEEEcCCCCEEEEEEC------------CCeEEEEEcCCCcEEEEEeCC-CCCeEEEEEcCCCCEEEEEE
Q psy6522 205 SAVFCVLFDKLGEVIVTGAD------------DLLIKLWRARDGKLLATLRGC-SGEISDIAIDNRNILLAAGT 265 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~------------DG~V~IWDl~tg~~l~tl~gH-~~~ItsLafSpDg~lLaSgs 265 (1407)
+....|+|+++|.+.++... ...|..++..++++...+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 56678999999988774321 125677777788877766654 36799999999999887763
No 439
>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}
Probab=27.89 E-value=38 Score=37.37 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=45.0
Q ss_pred CeeeEeeCCCCCC-CCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC-----------CCcccc-ccCCCCCcEEEeec
Q psy6522 599 LFEPTYDEVTNLP-PHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPD-ITTNDDGHVEIVEG 664 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~-~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~-~~l~~dg~v~liEg 664 (1407)
.+++|+|+..... ..|..+||... .+|..| |||..|+ ..|... ..+..+ +.|+...
T Consensus 66 ~l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~---------grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~-i~~~~~~ 135 (269)
T 4h2k_A 66 AFAGHTDVVPTGDENQWSSPPFSAEIIDGMLY---------GRGAADMKGSLAAMIVAAEEYVKANPNHKGT-IALLITS 135 (269)
T ss_dssp EEEEECCBCCCCCGGGCSSCTTSCCEETTEEE---------STTTTTTHHHHHHHHHHHHHHHHHCTTCSSE-EEEEEES
T ss_pred EEEeeecccCCCCcccccCCCCCeEEECCEEE---------eCCcccChHHHHHHHHHHHHHHHhCCCCCcc-EEEEEEe
Confidence 3456899875433 35788888766 677777 9999999 122211 123334 7888899
Q ss_pred ccccCCC-chHHHh
Q psy6522 665 SERNGER-PVEVEG 677 (1407)
Q Consensus 665 ~ee~gs~-gf~~~~ 677 (1407)
.||.|+. |-...+
T Consensus 136 ~EE~g~~~Ga~~~~ 149 (269)
T 4h2k_A 136 DEEATAKDGTIHVV 149 (269)
T ss_dssp CSSSCCTTSHHHHH
T ss_pred ccccCcccCHHHHH
Confidence 9999884 754433
No 440
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=27.32 E-value=8.3e+02 Score=30.08 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=44.0
Q ss_pred ccEEEEEECCCCCEEEEEEec-----------CCeEEEEECCCCceEEEEecCC-CCeEEEEEecCCCCEEEEE
Q psy6522 450 IKVTMVAWDASDRWVITAINF-----------NFQIKIWDAFNGDLVQVLKGHT-NEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 450 ~~VtslafSpdg~~Lasgs~~-----------DG~I~IWDl~tg~~l~~l~gH~-~~V~sLafsP~dg~~LaSg 511 (1407)
...-.|+|++.|.++++.... +..+.+.+..++++...+.++. ..++.++|+| |++.|+..
T Consensus 476 ~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp-Dg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC-CCCEEEEE
Confidence 345679999999976665431 1346677777888888887764 5899999999 77766544
No 441
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=26.57 E-value=1.1e+03 Score=29.93 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=75.7
Q ss_pred CCCEEEEEEcCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCC-------CCCeEEEEEcCCC-CEEEEEECCCe----E
Q psy6522 204 LSAVFCVLFDKL-GEVIVTGADDLLIKLWRARDGKLLATLRGC-------SGEISDIAIDNRN-ILLAAGTVDKT----I 270 (1407)
Q Consensus 204 ~~~V~~vafSpd-G~~LaTGS~DG~V~IWDl~tg~~l~tl~gH-------~~~ItsLafSpDg-~lLaSgs~DGt----I 270 (1407)
...|.+|+++|. ...+++++..+.|...+ +.|+.-..+..+ ...|.+|++.|.. ..++.+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999996 35667777777665554 344433333322 2469999999843 34444432211 2
Q ss_pred EEEe-CCCCceEEEEecc-------C--CceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccccc
Q psy6522 271 RIWN-LQTLAPISVLVGH-------Q--GIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNE 340 (1407)
Q Consensus 271 rVWD-l~tg~~v~~l~~H-------~--~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~ 340 (1407)
.||- ...|+.-..+... . ..+..|++.|.. ...++.+...+. ||-...+...-......+.
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~---~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~---- 163 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFN---SNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPD---- 163 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTE---EEEEEEECSSSC--EEEESSTTSSCEEETTSCC----
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCC---CCEEEEEeccCC--EEEECCCCcccCCCccCcc----
Confidence 3443 3334332222210 1 135567887743 256666653332 3433332111111111000
Q ss_pred ccCCCCcceEEEEECCC-CceEEEeeCC
Q psy6522 341 RIRPGNAHILCSSFSPG-GLFLATGSGD 367 (1407)
Q Consensus 341 ~~~~h~~~I~~vafSpd-g~~Lasgs~D 367 (1407)
.......+..+.++|. +..|+++..+
T Consensus 164 -~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 164 -AFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp -CCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred -ccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 0011145788899884 4456665544
No 442
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=26.34 E-value=7.1e+02 Score=27.69 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=103.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCcEEE---------EEeCCCCCeEEEEEcCCCCEEEEEECCCeEEEEeC---CC----
Q psy6522 214 KLGEVIVTGADDLLIKLWRARDGKLLA---------TLRGCSGEISDIAIDNRNILLAAGTVDKTIRIWNL---QT---- 277 (1407)
Q Consensus 214 pdG~~LaTGS~DG~V~IWDl~tg~~l~---------tl~gH~~~ItsLafSpDg~lLaSgs~DGtIrVWDl---~t---- 277 (1407)
|+..++++.+.+|.|+--.+.+.+... .++. ...+..+........|+..+..|.+.-... ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678889999999887765543221 1222 234444444444556666677787555443 22
Q ss_pred --CceEE---EEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeeccccccccccCCCCcceEEE
Q psy6522 278 --LAPIS---VLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMFNERIRPGNAHILCS 352 (1407)
Q Consensus 278 --g~~v~---~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~~~~~~~h~~~I~~v 352 (1407)
|.++. .+. ....|.++...+.. .+..+|+..+.+|.++-..+..-..... .. .....+..+ ..+..+
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~r----~G-~~~i~l~~~-d~lv~~ 151 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEF-EEGVKVFMATANGTVKKTVLTEFNRLRT----AG-KVAIKLVDG-DELIGV 151 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCC-CTTCEEEEEETTSEEEEEEGGGGTTCCT----TC-EESSCCCTT-CCEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccC-CCCcEEEEEeCCCeEEEEEHHHhhcccc----CC-eEEEEECCC-CEEEEE
Confidence 22211 122 23345555433211 1236789999999999887653321111 00 011112223 455555
Q ss_pred EECCCCceEEEeeCCceEEEEeccCCC------CCceeEEEeecCCCcceEEEcCCCCEEEEEeCCCeEEEEEcc
Q psy6522 353 SFSPGGLFLATGSGDHHVRVYKMDGVD------SPLGILEVEEHSDKVDSIQWSHSHLRFVSGSRDGTALIWYYK 421 (1407)
Q Consensus 353 afSpdg~~Lasgs~DG~I~IwDl~~~~------~~~~i~~l~~h~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~ 421 (1407)
....+...|+..+.+|.+..+....-. .......+. ....|.++....++..|++.+..|.++-.++.
T Consensus 152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred EEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 554555567788888988888764211 111122222 23456666555555678888888988887664
No 443
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=26.25 E-value=1.1e+03 Score=29.69 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCC-CEEEEEECCCeEEEEeCCCCceEEEEecc-------CCceEEEEeccCC
Q psy6522 247 GEISDIAIDNRN-ILLAAGTVDKTIRIWNLQTLAPISVLVGH-------QGIITGVNFCPLE 300 (1407)
Q Consensus 247 ~~ItsLafSpDg-~lLaSgs~DGtIrVWDl~tg~~v~~l~~H-------~~~VtsLafspd~ 300 (1407)
+.|..|+++|.+ ..|.++...+.|..++- .++.-..+..+ ...|.+|++.|..
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 379999999874 34555655565554442 23332233222 2358999999853
No 444
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
Probab=25.51 E-value=39 Score=40.62 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=44.8
Q ss_pred eeeEeeCCCCCC-CCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC-----------CCcccc-ccCCCCCcEEEeecc
Q psy6522 600 FEPTYDEVTNLP-PHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPD-ITTNDDGHVEIVEGS 665 (1407)
Q Consensus 600 ~~~v~Dv~T~~~-~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~-~~l~~dg~v~liEg~ 665 (1407)
+.+|+|+..... ..|..+||... .+|..| |||.+|+ ..|... ..+..+ +.+++...
T Consensus 111 l~aH~D~vp~~~~~~w~~~pf~~~~~~g~l~---------grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~-v~~~~~~~ 180 (481)
T 2pok_A 111 FYNHYDTVPADGDQVWTEDPFTLSVRNGFMY---------GRGVDDDKGHITARLSALRKYMQHHDDLPVN-ISFIMEGA 180 (481)
T ss_dssp EEEECCCCCSCSSCCCSSCTTSCEEETTEEE---------STTTTTTHHHHHHHHHHHHHHHHTCSSCSSE-EEEEEESC
T ss_pred EEEeccCcCCCCccccccCCCCceeeCCeEE---------ccccccCcHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecc
Confidence 455888764432 24666676654 456666 9999998 223222 233334 78888889
Q ss_pred cccCCCchHHHhhhh
Q psy6522 666 ERNGERPVEVEGQRH 680 (1407)
Q Consensus 666 ee~gs~gf~~~~~~~ 680 (1407)
||.|+.|....+.++
T Consensus 181 EE~g~~g~~~~~~~~ 195 (481)
T 2pok_A 181 EESASTDLDKYLEKH 195 (481)
T ss_dssp GGGTTTTHHHHHHHH
T ss_pred cccCchhHHHHHHHh
Confidence 999998875555443
No 445
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=24.25 E-value=8.5e+02 Score=27.92 Aligned_cols=300 Identities=11% Similarity=0.027 Sum_probs=135.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEeCCC-Cc---------eE-EEEec-cCCceEEEEeccCCCCCceEEEEEecCC
Q psy6522 247 GEISDIAIDNRNILLAAGTVDKTIRIWNLQT-LA---------PI-SVLVG-HQGIITGVNFCPLEVNGFNYLASTSTDG 314 (1407)
Q Consensus 247 ~~ItsLafSpDg~lLaSgs~DGtIrVWDl~t-g~---------~v-~~l~~-H~~~VtsLafspd~~~~~~~LaSgs~DG 314 (1407)
..|..|+.... ..+.-..||.|..|=... ++ .. ..+.. ....|..|+.-.. ..++....++
T Consensus 16 ~~v~~ia~G~~--hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~-----ht~al~~~gg 88 (406)
T 4d9s_A 16 RKVLIISAGAS--HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD-----HTVAYSQSGM 88 (406)
T ss_dssp CCEEEEEECSS--EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-----EEEEEETTTT
T ss_pred cceEEEecCCC--eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc-----eEEEEECCCC
Confidence 45555554433 444455678888885432 11 11 11111 1235666665432 3444444445
Q ss_pred ceeEEeeccccccc-----eeeeccccccccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCCCCC-------c
Q psy6522 315 CIGFWKYKLDIDIS-----KTVFHEPVMFNERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGVDSP-------L 382 (1407)
Q Consensus 315 tI~vWDl~t~~~~~-----~~~~~~~~~~~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~~~~-------~ 382 (1407)
.|..|-......+. ......+.. . .....|..++.. ..+.++-..+|.|+.|-.+..... .
T Consensus 89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~---~--l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~ 161 (406)
T 4d9s_A 89 EVYSWGWGDFGRLGHGNSSDLFTPLPIK---A--LHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 161 (406)
T ss_dssp EEEEEECCGGGTTCSSSCCCEEEEEECG---G--GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCE
T ss_pred EEEEEcCCCCcCCCCCCCCccccceEec---c--cCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCc
Confidence 88888644321111 000010110 0 112346666553 445555678899999965322110 0
Q ss_pred eeE-EEeec-CCCcceEEEcCCCCEEEEEeCCCeEEEEEccCCceEEeeeccCcCCCCCccccccccccccEEEEEECCC
Q psy6522 383 GIL-EVEEH-SDKVDSIQWSHSHLRFVSGSRDGTALIWYYKCSQWRFIRLDMNTCLPHTKETSDETNKKIKVTMVAWDAS 460 (1407)
Q Consensus 383 ~i~-~l~~h-~~~V~sIafSpdg~~LaSgs~DGtI~IWDl~t~~~~~~~l~~~~~~~~~~~~~~~~~~~~~VtslafSpd 460 (1407)
... .+... ...|..|+.. ....+.-..+|.|+.|-....... .....................|..++..
T Consensus 162 ~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~Gql----G~g~~~~~~~p~~v~~~~~~~i~~va~G-- 233 (406)
T 4d9s_A 162 LVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNL----GLGDRTDRLVPERVTSTGGEKMSMVACG-- 233 (406)
T ss_dssp EEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT----CSSSSCCEEEEEECCCSTTCCEEEEEEC--
T ss_pred ccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCC----CCCCCCCcCccEEecccCCceEEEEEEC--
Confidence 011 11111 1245555543 335566678999999954321100 0000000000000001122345555543
Q ss_pred CCEEEEEEecCCeEEEEECCC-Cce----------EEEEec-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCCc-
Q psy6522 461 DRWVITAINFNFQIKIWDAFN-GDL----------VQVLKG-HTNEVFVLESHPFDSRVLLSAGHDGLIIIWDILSSKQ- 527 (1407)
Q Consensus 461 g~~Lasgs~~DG~I~IWDl~t-g~~----------l~~l~g-H~~~V~sLafsP~dg~~LaSgs~DG~V~IWDi~sgk~- 527 (1407)
..+.++... +|.|+.|-... +++ ...+.. ....|..|+.. ....+.-..||.|+.|-......
T Consensus 234 ~~ht~~l~~-~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G---~~hs~alt~~G~v~~wG~n~~GqL 309 (406)
T 4d9s_A 234 WRHTISVSY-SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG---WRHTMALTSDGKLYGWGWNKFGQV 309 (406)
T ss_dssp SSEEEEEET-TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCcEEEEcC-CCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec---CCEEEEEcCCCeEEEeeCCCCCCC
Confidence 333344444 88899987532 111 111111 12346666553 34555667899999997654210
Q ss_pred ----cceeeeeeeecCCCCCceeEEEECCCCCEEEEEeCCCeEEEEEcCCC
Q psy6522 528 ----RGYKWFHNIVEGQGEGALFDGKWSPDGTTCALTDSYGHLLVYGLGGF 574 (1407)
Q Consensus 528 ----~~l~~~~~~~~g~~~~~I~slafSpDG~~LAsgs~DG~I~Iwdl~sg 574 (1407)
.........+.......|..++. -..+.++.+.+|.|+.|.....
T Consensus 310 G~g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n~~ 358 (406)
T 4d9s_A 310 GVGNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRGTN 358 (406)
T ss_dssp CSSSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECCTT
T ss_pred CCCCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCCCC
Confidence 00001111111112234555544 3455566678899999987543
No 446
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=24.24 E-value=38 Score=31.14 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.8
Q ss_pred hhHHHHhcCChHHHHHHHHHHHH
Q psy6522 3 LIIKYLEKGPCHEAAKVLTDLVE 25 (1407)
Q Consensus 3 LI~r~L~~g~~~~Aa~~L~~El~ 25 (1407)
-|+.||...++.+|+++|++|+.
T Consensus 16 aI~~YL~~~~~~~~~~alr~e~~ 38 (88)
T 1uuj_A 16 AIADYLRSNGYEEAYSVFKKEAE 38 (88)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcHHHHHHHHHHhc
Confidence 37899999999999999999974
No 447
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.02 E-value=88 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC
Q psy6522 205 SAVFCVLFDKLGEVIVTGADDLLIKLWRARDGKLLATLRG 244 (1407)
Q Consensus 205 ~~V~~vafSpdG~~LaTGS~DG~V~IWDl~tg~~l~tl~g 244 (1407)
..|.|+.+. ..+|+|-+.|+++|+||+.+++++.+..-
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 356766664 67999999999999999999999988764
No 448
>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A
Probab=23.27 E-value=43 Score=36.91 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=44.7
Q ss_pred CeeeEeeCCCCCC-CCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC-----------CCcccc-ccCCCCCcEEEeec
Q psy6522 599 LFEPTYDEVTNLP-PHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----------TELLPD-ITTNDDGHVEIVEG 664 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~-~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~-~~l~~dg~v~liEg 664 (1407)
.+++|+|+..... ..|..+||... .+|..| |||..|+ ..|... ..+..+ +.|+...
T Consensus 66 ~l~~H~D~vp~~~~~~w~~~pf~~~~~~g~~~---------g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~-v~~~~~~ 135 (268)
T 3t68_A 66 VFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLH---------GRGAADMKGSLACMIVAVERFIAEHPDHQGS-IGFLITS 135 (268)
T ss_dssp EEEEECCBCCCCCGGGCSSCTTSCEEETTEEE---------STTTTTTHHHHHHHHHHHHHHHHHCTTCSSE-EEEEEES
T ss_pred EEEccccccCCCCcccCCCCCCccEEECCEEE---------ecCcccchHHHHHHHHHHHHHHHhCCCCCCc-EEEEEEe
Confidence 3456899875433 35778888755 667777 9999999 122211 123334 7888999
Q ss_pred ccccCCC-chHHHh
Q psy6522 665 SERNGER-PVEVEG 677 (1407)
Q Consensus 665 ~ee~gs~-gf~~~~ 677 (1407)
.||.|+. |-...+
T Consensus 136 ~EE~g~~~Ga~~~~ 149 (268)
T 3t68_A 136 DEEGPFINGTVRVV 149 (268)
T ss_dssp CTTSSSCCHHHHHH
T ss_pred CCccCcccCHHHHH
Confidence 9999884 754333
No 449
>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1
Probab=22.70 E-value=32 Score=41.19 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=45.6
Q ss_pred CeeeEeeCCCCCCCCcCCCCcccCC--CCccCCCCCceEEeCCCCCCC-----------CCcccc-ccCCCCCcEEEeec
Q psy6522 599 LFEPTYDEVTNLPPHLMPPPFLVDL--NGTPYPPEVQRLVPGRENADD-----------TELLPD-ITTNDDGHVEIVEG 664 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~~~~~p~pfl~d~--~G~~yppd~Q~Lv~GR~~sdn-----------~~L~~~-~~l~~dg~v~liEg 664 (1407)
++++|+|+..... .|..+||...+ +|..| |||..|+ ..|... ..+..+ +.+++..
T Consensus 83 ~l~~H~D~vp~~~-~w~~~Pf~~~~~~~g~l~---------grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~-i~~i~~~ 151 (470)
T 1lfw_A 83 GIIGHMDVVPAGE-GWTRDPFKMEIDEEGRIY---------GRGSADDKGPSLTAYYGMLLLKEAGFKPKKK-IDFVLGT 151 (470)
T ss_dssp EEEEECCBCCCCS-CCSSCTTSCEECTTCEEE---------STTSSSSHHHHHHHHHHHHHHHHHTCCCSSE-EEEEEES
T ss_pred EEEEeecccCCCC-CccCCCcceeEeeCCEEE---------CCCcccChHHHHHHHHHHHHHHHcCCCCCCC-EEEEEec
Confidence 3456889875433 57777877663 67777 9999998 122221 123344 7888899
Q ss_pred ccccCCCchHHHhhh
Q psy6522 665 SERNGERPVEVEGQR 679 (1407)
Q Consensus 665 ~ee~gs~gf~~~~~~ 679 (1407)
.||.|+.|....+.+
T Consensus 152 ~EE~g~~G~~~~~~~ 166 (470)
T 1lfw_A 152 NEETNWVGIDYYLKH 166 (470)
T ss_dssp CTTTTCHHHHHHHHH
T ss_pred CcccCCccHHHHHHh
Confidence 999988776544433
No 450
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=22.50 E-value=63 Score=29.65 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=41.1
Q ss_pred CCCCCCCeEEEEe--cCeEEEEEEcccCCCCCCCceeEEEEE-CCCCCCCCCCCCCCCCC
Q psy6522 1007 REWNVGDRFCSMI--DDAWWWGTIEGKPSPTKSPFLGYKILW-DNNERENLSPWDLEPPK 1063 (1407)
Q Consensus 1007 ~~~~~g~rf~~~~--~~~~~~G~i~~~~~~p~s~w~~~~V~w-d~~~~~~~SpW~~e~~~ 1063 (1407)
..|.+|+-+-..| ||.||-++|+++. ++ ..+.|.+ |=|..+.++.=+|-++.
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~--~~---~~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTL--EN---GNLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEEC--TT---SCEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEEC--CC---CeEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4699999998888 7889999999984 22 2567887 45788888888887773
No 451
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=21.34 E-value=53 Score=37.90 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=44.4
Q ss_pred CeeeEeeCCCCCCCCcCCCCcccC-CCCccCCCCCceEEeCCCCCCC-----CCccccccCCCCCcEEEeeccccc-CCC
Q psy6522 599 LFEPTYDEVTNLPPHLMPPPFLVD-LNGTPYPPEVQRLVPGRENADD-----TELLPDITTNDDGHVEIVEGSERN-GER 671 (1407)
Q Consensus 599 ~~~~v~Dv~T~~~~~~~p~pfl~d-~~G~~yppd~Q~Lv~GR~~sdn-----~~L~~~~~l~~dg~v~liEg~ee~-gs~ 671 (1407)
.+++|+|+..... .|..+||... .+|..| |||.+|+ +.|.--..+..+ +.++....||. |+.
T Consensus 71 ~l~~H~D~vp~~~-~w~~~pf~~~~~~g~l~---------grG~~D~k~g~a~~l~a~~~~~~~-v~~~~~~~EE~~g~~ 139 (369)
T 2f7v_A 71 LFNVHLDTVPDSP-HWSADPHVMRRTEDRVI---------GLGVCDIKGAAAALVAAANAGDGD-AAFLFSSDEEANDPR 139 (369)
T ss_dssp EEEEECCBCCCCS-SCSSCTTSCEECSSEEE---------CTTTTTTHHHHHHHHHHHTTCCCC-EEEEEESCTTSSSCC
T ss_pred EEEeeecccCCCC-CCCCCCCCcEEECCEEE---------ecccccccHHHHHHHHHHhcCCCC-EEEEEEeCcccCCCc
Confidence 3456888775433 5777777654 466666 9999999 111110113344 78888888998 788
Q ss_pred chHHHhhh
Q psy6522 672 PVEVEGQR 679 (1407)
Q Consensus 672 gf~~~~~~ 679 (1407)
|....+.+
T Consensus 140 G~~~~~~~ 147 (369)
T 2f7v_A 140 CIAAFLAR 147 (369)
T ss_dssp HHHHHHTT
T ss_pred CHHHHHhc
Confidence 86655544
No 452
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.16 E-value=1.2e+03 Score=28.60 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=44.7
Q ss_pred cccEEEEEECCCCCEEEEEEec-----------CCeEEEEECCCCceEEEEecC-CCCeEEEEEecCCCCEEEEE
Q psy6522 449 KIKVTMVAWDASDRWVITAINF-----------NFQIKIWDAFNGDLVQVLKGH-TNEVFVLESHPFDSRVLLSA 511 (1407)
Q Consensus 449 ~~~VtslafSpdg~~Lasgs~~-----------DG~I~IWDl~tg~~l~~l~gH-~~~V~sLafsP~dg~~LaSg 511 (1407)
-.....|+|+++|.+.++.... ...|..++..++++...+.+. ...++.++|+| |++.|+.+
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP-D~ktLfV~ 548 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP-DQKTLFVG 548 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT-TSSEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC-CCCEEEEE
Confidence 4567789999999877754320 126777888788887777654 35789999999 77766554
No 453
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.22 E-value=8.4e+02 Score=26.35 Aligned_cols=153 Identities=8% Similarity=-0.070 Sum_probs=77.4
Q ss_pred EEEEEECCCeEEEEeCCCCce-EEEEeccCCceEEEEeccCCCCCceEEEEEecCCceeEEeeccccccceeeecccccc
Q psy6522 260 LLAAGTVDKTIRIWNLQTLAP-ISVLVGHQGIITGVNFCPLEVNGFNYLASTSTDGCIGFWKYKLDIDISKTVFHEPVMF 338 (1407)
Q Consensus 260 lLaSgs~DGtIrVWDl~tg~~-v~~l~~H~~~VtsLafspd~~~~~~~LaSgs~DGtI~vWDl~t~~~~~~~~~~~~~~~ 338 (1407)
.+++.+.+|.|+--....... ...+... +.+..+...... ..|+..+..|.+.-+....-.... ....+...
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~----~~ll~~T~~Gr~~~~~~~elp~~r--~~G~~i~~ 76 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSN----QPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTG 76 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETT----SCEEEEETTSEEEEECGGGSCCSS--SCCEEGGG
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCC----CEEEEEeCCCeEEEEEHHHCCCcC--CCCeEeee
Confidence 455566777776544322110 0012222 233333333322 566667777876555443211101 11111111
Q ss_pred ccccCCCCcceEEEEECCCCceEEEeeCCceEEEEeccCC----CCCceeEEEeecCCCcceEEEc-CCCCEEEEEeCCC
Q psy6522 339 NERIRPGNAHILCSSFSPGGLFLATGSGDHHVRVYKMDGV----DSPLGILEVEEHSDKVDSIQWS-HSHLRFVSGSRDG 413 (1407)
Q Consensus 339 ~~~~~~h~~~I~~vafSpdg~~Lasgs~DG~I~IwDl~~~----~~~~~i~~l~~h~~~V~sIafS-pdg~~LaSgs~DG 413 (1407)
...+.. ...|.++....++.+|+.++..|.++...+..- .....+..+.. .+.+..+... ..+..|+..+.+|
T Consensus 77 ~i~L~~-~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G 154 (256)
T 1zvt_A 77 KLTLPP-GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAG 154 (256)
T ss_dssp TCCCCT-TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTS
T ss_pred eecCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCC
Confidence 112222 355666644345667888899999999987421 12223333332 3455555555 3455788888999
Q ss_pred eEEEEEcc
Q psy6522 414 TALIWYYK 421 (1407)
Q Consensus 414 tI~IWDl~ 421 (1407)
.+..+.+.
T Consensus 155 ~~lrf~~~ 162 (256)
T 1zvt_A 155 RMLMFPVS 162 (256)
T ss_dssp EEEEEEGG
T ss_pred eEEEEEHH
Confidence 98888765
Done!