Query psy6523
Match_columns 713
No_of_seqs 452 out of 3518
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:16:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 5.2E-67 1.1E-71 559.6 19.9 331 95-713 186-533 (802)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1E-56 2.2E-61 457.8 16.6 253 90-616 142-397 (406)
3 KOG0730|consensus 100.0 5.9E-54 1.3E-58 467.1 8.3 443 111-655 199-688 (693)
4 KOG0733|consensus 100.0 4.4E-52 9.5E-57 445.1 13.3 276 90-656 502-784 (802)
5 KOG0734|consensus 100.0 3.6E-48 7.8E-53 409.1 14.9 266 94-636 299-571 (752)
6 KOG0736|consensus 100.0 6.1E-48 1.3E-52 422.9 13.7 274 93-656 666-947 (953)
7 KOG0738|consensus 100.0 4.7E-47 1E-51 388.7 11.9 277 89-657 202-485 (491)
8 KOG0731|consensus 100.0 1.1E-45 2.5E-50 414.6 15.2 287 93-652 305-599 (774)
9 KOG0727|consensus 100.0 2.8E-44 6E-49 348.7 15.0 125 489-613 274-398 (408)
10 KOG0729|consensus 100.0 2.9E-44 6.2E-49 351.0 11.0 133 489-621 296-428 (435)
11 KOG0728|consensus 100.0 2E-43 4.4E-48 342.4 13.3 251 90-614 138-391 (404)
12 COG0465 HflB ATP-dependent Zn 100.0 5.2E-43 1.1E-47 387.8 16.3 284 94-651 145-435 (596)
13 KOG0726|consensus 100.0 1.6E-43 3.4E-48 349.8 7.7 251 91-615 177-430 (440)
14 KOG0652|consensus 100.0 4.1E-43 8.9E-48 342.0 8.9 250 90-613 162-414 (424)
15 KOG0739|consensus 100.0 2.1E-42 4.6E-47 342.9 3.0 283 90-655 124-430 (439)
16 TIGR01243 CDC48 AAA family ATP 100.0 2.6E-41 5.6E-46 398.7 12.8 480 92-656 171-725 (733)
17 COG1223 Predicted ATPase (AAA+ 100.0 8.3E-41 1.8E-45 326.2 12.3 239 91-610 113-354 (368)
18 KOG0735|consensus 100.0 4.1E-40 8.8E-45 358.1 13.7 226 94-597 662-891 (952)
19 KOG0737|consensus 100.0 1E-39 2.3E-44 335.7 14.5 156 486-646 206-364 (386)
20 PTZ00454 26S protease regulato 100.0 1.4E-39 2.9E-44 354.2 15.1 125 490-614 265-389 (398)
21 COG0464 SpoVK ATPases of the A 100.0 1.9E-38 4E-43 359.8 16.2 246 92-614 235-486 (494)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.5E-37 3.3E-42 344.8 16.7 322 4-614 141-466 (489)
23 PTZ00361 26 proteosome regulat 100.0 1.6E-37 3.4E-42 339.8 14.0 125 490-614 303-427 (438)
24 PRK03992 proteasome-activating 100.0 2.3E-37 5.1E-42 338.5 15.3 128 490-617 251-378 (389)
25 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.8E-37 8.2E-42 366.3 16.2 156 493-650 1753-1918(2281)
26 TIGR01241 FtsH_fam ATP-depende 100.0 6.2E-37 1.3E-41 346.4 15.3 274 93-640 49-325 (495)
27 KOG0651|consensus 100.0 4.4E-37 9.5E-42 307.5 6.3 127 488-614 250-376 (388)
28 CHL00176 ftsH cell division pr 100.0 4.8E-36 1E-40 342.6 15.6 160 491-650 303-466 (638)
29 KOG0741|consensus 100.0 8E-36 1.7E-40 315.5 6.3 124 492-615 352-494 (744)
30 KOG0730|consensus 100.0 2.3E-34 5E-39 314.2 14.7 233 367-713 218-456 (693)
31 PRK10733 hflB ATP-dependent me 100.0 3.4E-34 7.4E-39 331.3 15.9 150 491-640 272-422 (644)
32 TIGR01242 26Sp45 26S proteasom 100.0 4.3E-34 9.4E-39 311.5 14.8 121 491-611 243-363 (364)
33 KOG0740|consensus 100.0 4.7E-35 1E-39 312.4 6.2 271 89-656 143-419 (428)
34 TIGR03689 pup_AAA proteasome A 100.0 6.5E-34 1.4E-38 315.1 15.1 124 491-614 315-481 (512)
35 KOG0732|consensus 100.0 4.7E-33 1E-37 320.3 14.9 244 96-616 262-530 (1080)
36 PLN00020 ribulose bisphosphate 100.0 2.9E-31 6.4E-36 276.2 11.1 100 492-594 239-354 (413)
37 KOG0736|consensus 99.9 2.6E-27 5.7E-32 261.0 13.7 177 492-713 516-694 (953)
38 COG0464 SpoVK ATPases of the A 99.9 2.7E-26 5.7E-31 260.5 14.4 165 490-713 100-264 (494)
39 TIGR01243 CDC48 AAA family ATP 99.9 6.9E-24 1.5E-28 250.8 17.2 180 491-713 296-475 (733)
40 KOG0743|consensus 99.9 1.1E-21 2.3E-26 208.4 13.0 89 493-583 320-412 (457)
41 KOG0735|consensus 99.8 4.7E-21 1E-25 210.0 13.0 150 506-713 538-689 (952)
42 cd00190 Tryp_SPc Trypsin-like 99.8 7E-19 1.5E-23 178.7 13.0 182 194-380 1-184 (232)
43 KOG3627|consensus 99.8 6.3E-19 1.4E-23 183.0 12.1 185 192-380 11-204 (256)
44 KOG0742|consensus 99.8 9.5E-18 2.1E-22 174.0 14.2 96 488-587 466-588 (630)
45 KOG0729|consensus 99.7 7.4E-18 1.6E-22 166.1 11.6 174 381-713 26-199 (435)
46 KOG0744|consensus 99.7 1.5E-18 3.2E-23 175.6 6.8 114 492-609 280-412 (423)
47 smart00020 Tryp_SPc Trypsin-li 99.7 1.6E-17 3.5E-22 168.8 12.3 182 193-380 1-185 (229)
48 PF00089 Trypsin: Trypsin; In 99.7 1.9E-16 4E-21 159.6 9.7 176 194-380 1-178 (220)
49 PF00004 AAA: ATPase family as 99.6 5.8E-17 1.3E-21 150.1 2.1 49 491-540 83-132 (132)
50 CHL00181 cbbX CbbX; Provisiona 99.6 6.8E-16 1.5E-20 162.1 10.0 99 492-595 146-258 (287)
51 TIGR02880 cbbX_cfxQ probable R 99.6 7.8E-15 1.7E-19 154.2 9.2 100 492-595 145-257 (284)
52 TIGR02639 ClpA ATP-dependent C 99.5 1.1E-14 2.5E-19 172.1 9.1 110 78-216 164-285 (731)
53 TIGR02881 spore_V_K stage V sp 99.5 1.3E-13 2.8E-18 143.7 12.1 99 492-594 128-241 (261)
54 TIGR00763 lon ATP-dependent pr 99.4 2.4E-13 5.3E-18 161.7 11.6 44 508-554 462-505 (775)
55 PRK00080 ruvB Holliday junctio 99.4 2.9E-12 6.3E-17 138.1 15.7 100 509-611 150-250 (328)
56 TIGR00635 ruvB Holliday juncti 99.4 3.7E-12 8E-17 135.9 14.7 99 509-610 129-228 (305)
57 PRK11034 clpA ATP-dependent Cl 99.3 3E-12 6.5E-17 149.9 10.1 103 507-612 313-434 (758)
58 TIGR02902 spore_lonB ATP-depen 99.3 6.2E-11 1.3E-15 135.1 17.5 96 510-610 235-331 (531)
59 PF05496 RuvB_N: Holliday junc 99.3 4.5E-11 9.8E-16 118.3 14.0 65 509-575 149-214 (233)
60 PRK14962 DNA polymerase III su 99.2 4.1E-10 8.9E-15 126.0 17.0 107 493-609 133-240 (472)
61 PRK10865 protein disaggregatio 99.2 6.5E-11 1.4E-15 141.8 9.6 85 78-175 160-256 (857)
62 TIGR03345 VI_ClpV1 type VI sec 99.1 1.2E-10 2.6E-15 139.2 11.1 68 507-577 314-391 (852)
63 PRK04195 replication factor C 99.1 1E-09 2.2E-14 124.3 16.2 89 511-607 132-221 (482)
64 PRK14961 DNA polymerase III su 99.1 2.3E-09 5E-14 117.0 17.9 107 493-609 135-242 (363)
65 PRK06645 DNA polymerase III su 99.1 2.1E-09 4.5E-14 120.8 17.0 109 492-607 143-252 (507)
66 PRK07940 DNA polymerase III su 99.1 8.3E-10 1.8E-14 120.7 12.8 85 492-585 132-216 (394)
67 PRK14960 DNA polymerase III su 99.1 1.3E-09 2.7E-14 123.5 14.1 106 492-607 133-239 (702)
68 PRK13342 recombination factor 99.1 2.6E-09 5.7E-14 118.7 16.1 101 496-610 111-218 (413)
69 TIGR00362 DnaA chromosomal rep 99.1 1.1E-09 2.4E-14 121.5 12.9 128 509-651 233-366 (405)
70 PRK14956 DNA polymerase III su 99.1 2.8E-09 6E-14 117.7 15.7 91 492-588 136-227 (484)
71 PRK12323 DNA polymerase III su 99.0 2.1E-09 4.6E-14 121.4 14.3 91 492-588 139-230 (700)
72 TIGR03346 chaperone_ClpB ATP-d 99.0 3.2E-10 7E-15 136.4 7.8 68 507-577 300-377 (852)
73 PRK00149 dnaA chromosomal repl 99.0 1.1E-09 2.4E-14 123.1 11.5 99 510-612 246-350 (450)
74 PRK07003 DNA polymerase III su 99.0 6.2E-09 1.3E-13 119.2 16.9 91 492-588 134-225 (830)
75 TIGR02928 orc1/cdc6 family rep 99.0 1.1E-08 2.4E-13 112.0 16.9 101 508-612 164-275 (365)
76 CHL00095 clpC Clp protease ATP 99.0 3E-10 6.4E-15 136.3 4.8 85 78-175 161-257 (821)
77 PRK14958 DNA polymerase III su 99.0 6.9E-09 1.5E-13 117.4 15.2 107 492-608 134-241 (509)
78 COG5640 Secreted trypsin-like 99.0 1.5E-09 3.2E-14 111.9 8.4 216 192-419 31-277 (413)
79 PRK14951 DNA polymerase III su 99.0 1.4E-08 3E-13 116.4 17.2 91 492-588 139-230 (618)
80 TIGR02397 dnaX_nterm DNA polym 99.0 1.3E-08 2.7E-13 111.1 16.3 106 493-608 133-239 (355)
81 PRK05563 DNA polymerase III su 98.9 2E-08 4.3E-13 115.2 18.0 92 492-589 134-226 (559)
82 COG2255 RuvB Holliday junction 98.9 4.1E-08 8.8E-13 99.3 17.8 99 510-611 152-251 (332)
83 PRK14964 DNA polymerase III su 98.9 1.5E-08 3.2E-13 113.2 16.2 105 492-606 131-236 (491)
84 COG1224 TIP49 DNA helicase TIP 98.9 6.9E-09 1.5E-13 107.5 12.4 113 492-611 306-432 (450)
85 PRK12402 replication factor C 98.9 1.8E-08 4E-13 108.9 16.3 91 510-609 156-247 (337)
86 PRK07994 DNA polymerase III su 98.9 1.8E-08 3.9E-13 115.7 16.6 90 492-587 134-224 (647)
87 PRK00411 cdc6 cell division co 98.9 5.3E-09 1.1E-13 115.8 11.7 117 493-612 158-283 (394)
88 TIGR02640 gas_vesic_GvpN gas v 98.9 4.4E-09 9.6E-14 109.6 10.4 95 509-611 151-257 (262)
89 PRK14949 DNA polymerase III su 98.9 2.7E-08 5.9E-13 116.1 16.7 91 492-588 134-225 (944)
90 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.1E-08 2.3E-13 104.3 11.9 95 510-608 125-225 (226)
91 PRK14963 DNA polymerase III su 98.9 3.4E-08 7.3E-13 111.6 17.0 90 492-587 131-221 (504)
92 PRK10787 DNA-binding ATP-depen 98.9 7.1E-09 1.5E-13 122.8 11.9 99 507-609 463-580 (784)
93 PRK06893 DNA replication initi 98.9 1.9E-08 4E-13 102.8 13.4 98 509-608 126-227 (229)
94 PRK08691 DNA polymerase III su 98.9 2E-08 4.3E-13 115.0 14.4 107 492-608 134-241 (709)
95 PRK08903 DnaA regulatory inact 98.9 4.5E-08 9.7E-13 99.9 15.2 97 509-609 122-224 (227)
96 PRK05896 DNA polymerase III su 98.9 2.6E-08 5.5E-13 113.0 14.3 89 493-587 135-224 (605)
97 PRK07764 DNA polymerase III su 98.8 5.4E-08 1.2E-12 115.3 17.0 91 492-588 135-226 (824)
98 PRK13407 bchI magnesium chelat 98.8 5.2E-08 1.1E-12 104.2 15.0 98 508-609 170-304 (334)
99 PRK14965 DNA polymerase III su 98.8 4.6E-08 1E-12 112.7 15.4 90 492-587 134-224 (576)
100 PRK14957 DNA polymerase III su 98.8 7E-08 1.5E-12 109.3 16.6 91 492-588 134-225 (546)
101 PHA02544 44 clamp loader, smal 98.8 5E-08 1.1E-12 104.7 14.8 66 91-165 13-78 (316)
102 COG1222 RPT1 ATP-dependent 26S 98.8 1.7E-09 3.7E-14 112.4 3.0 87 627-713 87-173 (406)
103 PRK14959 DNA polymerase III su 98.8 5.3E-08 1.2E-12 111.0 15.3 88 492-585 134-222 (624)
104 TIGR01650 PD_CobS cobaltochela 98.8 4.6E-08 1E-12 103.2 13.7 47 127-173 61-109 (327)
105 PRK14953 DNA polymerase III su 98.8 9.4E-08 2E-12 107.6 17.0 107 492-608 134-241 (486)
106 PRK13341 recombination factor 98.8 4.6E-08 1E-12 114.6 14.9 66 89-163 18-85 (725)
107 PLN03025 replication factor C 98.8 8.4E-08 1.8E-12 103.0 15.6 88 510-606 130-218 (319)
108 PRK08451 DNA polymerase III su 98.8 1.5E-07 3.2E-12 106.2 18.0 94 492-591 132-226 (535)
109 PRK06647 DNA polymerase III su 98.8 1.1E-07 2.4E-12 108.7 17.1 91 492-588 134-225 (563)
110 PRK14952 DNA polymerase III su 98.8 1.3E-07 2.7E-12 108.2 16.8 90 492-587 133-223 (584)
111 PRK14969 DNA polymerase III su 98.8 7.9E-08 1.7E-12 109.5 15.1 91 492-588 134-225 (527)
112 PRK09111 DNA polymerase III su 98.8 1.4E-07 3E-12 108.5 17.2 91 492-588 147-238 (598)
113 PRK14088 dnaA chromosomal repl 98.8 2.6E-08 5.6E-13 111.2 10.7 131 509-652 228-364 (440)
114 PRK06305 DNA polymerase III su 98.8 1.5E-07 3.2E-12 105.4 16.5 88 493-586 137-225 (451)
115 PRK14970 DNA polymerase III su 98.8 2.1E-07 4.5E-12 102.1 17.4 90 493-588 124-214 (367)
116 KOG2004|consensus 98.8 3.3E-08 7.3E-13 110.4 10.7 66 97-165 408-473 (906)
117 PF05673 DUF815: Protein of un 98.8 8.1E-08 1.7E-12 96.6 12.5 73 90-168 18-93 (249)
118 PRK14955 DNA polymerase III su 98.8 6.7E-08 1.5E-12 106.8 13.1 110 493-608 143-254 (397)
119 PRK11034 clpA ATP-dependent Cl 98.7 8E-08 1.7E-12 113.1 14.1 37 131-167 489-525 (758)
120 PRK14086 dnaA chromosomal repl 98.7 1.3E-07 2.8E-12 107.4 14.6 98 512-613 413-517 (617)
121 PRK05342 clpX ATP-dependent pr 98.7 4.9E-08 1.1E-12 107.4 11.1 46 129-174 107-153 (412)
122 TIGR02903 spore_lon_C ATP-depe 98.7 3.5E-07 7.5E-12 106.2 18.2 97 509-610 323-429 (615)
123 PRK07133 DNA polymerase III su 98.7 4E-07 8.7E-12 105.4 18.4 91 492-588 133-224 (725)
124 PRK00440 rfc replication facto 98.7 4.8E-07 1E-11 97.0 17.7 91 510-609 133-224 (319)
125 COG2256 MGS1 ATPase related to 98.7 1.3E-07 2.8E-12 100.1 11.7 68 88-164 13-82 (436)
126 COG0466 Lon ATP-dependent Lon 98.7 1.6E-07 3.5E-12 105.6 12.9 65 98-165 321-385 (782)
127 PRK14954 DNA polymerase III su 98.7 3.8E-07 8.3E-12 105.0 16.1 89 493-587 143-232 (620)
128 PRK14950 DNA polymerase III su 98.6 6.2E-07 1.3E-11 103.9 17.2 90 492-587 135-225 (585)
129 PRK12422 chromosomal replicati 98.6 2.8E-07 6.1E-12 102.8 13.8 100 510-612 237-344 (445)
130 TIGR00382 clpX endopeptidase C 98.6 1.8E-07 4E-12 102.4 10.9 44 130-173 116-160 (413)
131 COG0714 MoxR-like ATPases [Gen 98.6 2.9E-07 6.3E-12 99.3 12.1 38 130-167 43-80 (329)
132 PRK08084 DNA replication initi 98.6 5.1E-07 1.1E-11 92.6 12.8 94 511-608 134-233 (235)
133 CHL00081 chlI Mg-protoporyphyr 98.5 1.2E-06 2.6E-11 94.0 14.9 102 508-611 186-322 (350)
134 PRK14948 DNA polymerase III su 98.5 3.1E-06 6.6E-11 98.1 19.3 88 492-585 136-224 (620)
135 TIGR02639 ClpA ATP-dependent C 98.5 7.8E-07 1.7E-11 105.9 14.8 70 522-593 632-713 (731)
136 PRK11331 5-methylcytosine-spec 98.5 5.2E-07 1.1E-11 98.8 11.7 26 130-155 194-219 (459)
137 PTZ00112 origin recognition co 98.5 1.6E-06 3.4E-11 100.3 15.8 101 507-613 900-1008(1164)
138 TIGR02030 BchI-ChlI magnesium 98.5 1.9E-06 4.2E-11 92.4 14.5 102 508-611 173-309 (337)
139 PRK14971 DNA polymerase III su 98.5 3.1E-06 6.8E-11 98.0 16.8 90 492-587 136-226 (614)
140 PF07728 AAA_5: AAA domain (dy 98.5 2E-07 4.4E-12 87.2 5.5 36 132-167 1-36 (139)
141 PRK08727 hypothetical protein; 98.4 3E-06 6.4E-11 86.8 13.8 95 511-609 129-229 (233)
142 PRK06620 hypothetical protein; 98.4 1.5E-06 3.2E-11 87.7 11.1 96 508-608 113-213 (214)
143 PHA02244 ATPase-like protein 98.4 1.9E-06 4.2E-11 92.1 12.3 34 129-162 118-151 (383)
144 PRK05642 DNA replication initi 98.4 2.8E-06 6E-11 87.1 13.0 97 508-608 130-232 (234)
145 PRK14087 dnaA chromosomal repl 98.4 4.8E-06 1E-10 93.3 15.7 126 512-651 242-377 (450)
146 TIGR02442 Cob-chelat-sub cobal 98.4 2.6E-06 5.7E-11 99.6 14.1 102 508-612 168-305 (633)
147 KOG0989|consensus 98.4 1.7E-06 3.7E-11 88.7 10.4 79 495-582 147-226 (346)
148 KOG1942|consensus 98.3 4.6E-06 1E-10 84.5 12.2 58 110-174 51-110 (456)
149 TIGR00390 hslU ATP-dependent p 98.3 6.3E-07 1.4E-11 97.0 6.3 45 129-173 46-91 (441)
150 TIGR00678 holB DNA polymerase 98.3 4.6E-06 1E-10 82.4 11.6 72 493-574 112-183 (188)
151 TIGR03346 chaperone_ClpB ATP-d 98.3 4.5E-06 9.8E-11 100.9 13.8 85 508-594 707-828 (852)
152 PF09342 DUF1986: Domain of un 98.3 1.3E-06 2.8E-11 86.3 7.2 115 203-327 14-131 (267)
153 TIGR03345 VI_ClpV1 type VI sec 98.3 7.4E-06 1.6E-10 98.5 14.9 69 522-593 751-832 (852)
154 KOG2028|consensus 98.3 6.9E-06 1.5E-10 85.7 12.5 100 508-610 249-367 (554)
155 cd00009 AAA The AAA+ (ATPases 98.2 5.9E-06 1.3E-10 76.7 9.6 40 129-168 18-60 (151)
156 COG2812 DnaX DNA polymerase II 98.2 3.1E-05 6.6E-10 86.7 16.4 98 487-590 129-227 (515)
157 PRK09112 DNA polymerase III su 98.2 1.2E-05 2.5E-10 87.1 12.4 81 492-578 156-236 (351)
158 PRK09087 hypothetical protein; 98.2 7.9E-06 1.7E-10 83.2 10.3 98 509-610 118-221 (226)
159 PRK13531 regulatory ATPase Rav 98.2 2E-05 4.4E-10 87.2 14.2 101 510-613 148-285 (498)
160 smart00350 MCM minichromosome 98.2 6.5E-05 1.4E-09 85.8 18.4 101 509-611 343-504 (509)
161 TIGR03015 pepcterm_ATPase puta 98.2 7.9E-05 1.7E-09 77.8 17.6 84 525-611 178-266 (269)
162 TIGR02031 BchD-ChlD magnesium 98.1 3E-05 6.6E-10 89.7 14.9 101 509-612 127-259 (589)
163 COG1474 CDC6 Cdc6-related prot 98.1 2.6E-05 5.7E-10 84.8 13.2 101 507-611 154-265 (366)
164 CHL00095 clpC Clp protease ATP 98.1 2.7E-05 5.8E-10 94.0 14.4 67 524-592 704-782 (821)
165 TIGR00764 lon_rel lon-related 98.1 1.2E-05 2.5E-10 93.3 10.7 102 509-612 268-392 (608)
166 PRK05564 DNA polymerase III su 98.1 5.2E-05 1.1E-09 81.3 14.9 78 492-577 108-185 (313)
167 COG0542 clpA ATP-binding subun 98.1 2.5E-05 5.4E-10 90.7 13.0 42 129-170 520-564 (786)
168 PRK05201 hslU ATP-dependent pr 98.1 3.9E-06 8.5E-11 91.1 5.5 44 130-173 50-94 (443)
169 PRK07471 DNA polymerase III su 98.1 9.7E-05 2.1E-09 80.5 15.9 78 492-577 156-233 (365)
170 KOG0728|consensus 98.0 1.1E-06 2.4E-11 87.1 0.6 82 632-713 88-169 (404)
171 PRK06964 DNA polymerase III su 98.0 1.8E-05 3.8E-10 85.1 9.2 57 492-553 147-203 (342)
172 PRK10865 protein disaggregatio 98.0 4E-05 8.6E-10 92.5 12.9 67 522-592 749-829 (857)
173 PRK05707 DNA polymerase III su 98.0 2.9E-05 6.2E-10 83.4 10.3 78 492-577 121-198 (328)
174 KOG2680|consensus 98.0 2.8E-05 6.1E-10 79.3 8.9 100 511-613 319-431 (454)
175 KOG0726|consensus 97.9 5.1E-06 1.1E-10 84.2 3.3 67 60-126 237-323 (440)
176 PF06068 TIP49: TIP49 C-termin 97.9 6.8E-06 1.5E-10 87.1 3.9 59 110-175 37-97 (398)
177 KOG1969|consensus 97.9 5.7E-05 1.2E-09 85.5 10.8 78 512-594 441-518 (877)
178 COG2607 Predicted ATPase (AAA+ 97.9 8.2E-05 1.8E-09 74.0 10.6 54 507-560 172-245 (287)
179 KOG0727|consensus 97.9 1.9E-05 4.2E-10 78.5 5.6 92 13-124 180-291 (408)
180 PRK08058 DNA polymerase III su 97.9 3.7E-05 8.1E-10 82.8 8.3 56 492-552 125-180 (329)
181 PTZ00454 26S protease regulato 97.8 6.9E-06 1.5E-10 90.4 1.8 76 638-713 92-167 (398)
182 PF00308 Bac_DnaA: Bacterial d 97.8 0.00012 2.6E-09 74.3 10.3 77 508-587 130-212 (219)
183 smart00763 AAA_PrkA PrkA AAA d 97.8 3E-05 6.6E-10 83.0 5.5 66 98-168 49-123 (361)
184 COG0470 HolB ATPase involved i 97.7 0.00021 4.6E-09 76.6 11.3 55 492-551 124-178 (325)
185 KOG0652|consensus 97.6 3.2E-05 6.9E-10 77.4 3.2 78 636-713 116-193 (424)
186 PRK07399 DNA polymerase III su 97.6 0.0007 1.5E-08 72.3 13.0 82 492-581 139-220 (314)
187 CHL00195 ycf46 Ycf46; Provisio 97.5 0.00055 1.2E-08 77.2 11.0 74 509-587 115-189 (489)
188 smart00382 AAA ATPases associa 97.4 0.00012 2.6E-09 67.1 4.2 39 130-168 2-43 (148)
189 PRK09862 putative ATP-dependen 97.4 0.0036 7.9E-08 70.7 16.7 38 572-609 453-490 (506)
190 PRK04132 replication factor C 97.4 0.0018 3.8E-08 77.2 14.6 77 494-575 647-724 (846)
191 PRK08939 primosomal protein Dn 97.4 9.9E-05 2.1E-09 78.5 3.7 42 129-170 155-199 (306)
192 PTZ00361 26 proteosome regulat 97.4 7.2E-05 1.6E-09 83.0 2.5 77 637-713 129-205 (438)
193 KOG0741|consensus 97.4 7.3E-05 1.6E-09 81.6 2.3 74 128-216 536-609 (744)
194 PRK08116 hypothetical protein; 97.4 0.00013 2.7E-09 76.4 3.7 42 129-170 113-157 (268)
195 PRK07952 DNA replication prote 97.4 0.00015 3.3E-09 74.4 4.1 41 130-170 99-142 (244)
196 PRK00131 aroK shikimate kinase 97.3 0.00018 3.8E-09 69.8 3.8 35 128-162 2-36 (175)
197 COG0593 DnaA ATPase involved i 97.3 0.00088 1.9E-08 73.1 9.4 101 510-614 210-316 (408)
198 PF01078 Mg_chelatase: Magnesi 97.3 0.00031 6.8E-09 69.5 5.4 44 98-153 2-45 (206)
199 PF13207 AAA_17: AAA domain; P 97.3 0.00016 3.4E-09 65.7 3.1 31 133-163 2-32 (121)
200 PRK12377 putative replication 97.3 0.00022 4.8E-09 73.4 4.4 40 130-169 101-143 (248)
201 PF07724 AAA_2: AAA domain (Cd 97.3 0.0002 4.4E-09 69.5 3.8 40 129-168 2-45 (171)
202 COG0542 clpA ATP-binding subun 97.3 0.00023 5.1E-09 82.9 4.9 94 97-216 168-273 (786)
203 COG1219 ClpX ATP-dependent pro 97.3 0.00019 4E-09 74.2 3.5 46 130-175 97-143 (408)
204 TIGR00368 Mg chelatase-related 97.3 0.0049 1.1E-07 69.9 15.2 37 573-609 461-497 (499)
205 PF05621 TniB: Bacterial TniB 97.3 0.011 2.4E-07 61.8 16.6 94 510-606 183-284 (302)
206 PF07726 AAA_3: ATPase family 97.3 0.00016 3.4E-09 65.9 2.5 31 133-163 2-32 (131)
207 COG1484 DnaC DNA replication p 97.3 0.00027 5.8E-09 73.2 4.4 43 129-171 104-149 (254)
208 PRK03992 proteasome-activating 97.2 0.00018 3.9E-09 79.4 2.5 75 639-713 79-153 (389)
209 KOG0739|consensus 97.2 0.00016 3.6E-09 73.8 1.7 34 680-713 122-155 (439)
210 PRK13406 bchD magnesium chelat 97.1 0.0027 5.9E-08 73.2 11.6 100 509-611 136-250 (584)
211 PRK05022 anaerobic nitric oxid 97.1 0.0043 9.2E-08 71.1 13.1 63 97-167 185-250 (509)
212 PF01695 IstB_IS21: IstB-like 97.1 0.00024 5.1E-09 69.6 2.1 43 128-170 45-90 (178)
213 PRK08118 topology modulation p 97.1 0.00042 9E-09 67.1 3.3 33 131-163 2-34 (167)
214 PRK08769 DNA polymerase III su 97.0 0.0045 9.8E-08 66.1 11.1 80 492-581 128-207 (319)
215 PF03215 Rad17: Rad17 cell cyc 97.0 0.00088 1.9E-08 76.1 5.7 70 90-164 10-79 (519)
216 PRK08699 DNA polymerase III su 97.0 0.0016 3.5E-08 69.9 7.3 56 492-552 128-183 (325)
217 PRK06090 DNA polymerase III su 97.0 0.003 6.4E-08 67.5 9.2 56 492-552 123-178 (319)
218 PRK06871 DNA polymerase III su 97.0 0.0065 1.4E-07 65.1 11.5 77 492-577 122-198 (325)
219 PRK08181 transposase; Validate 96.9 0.00036 7.8E-09 72.7 1.8 42 129-170 105-149 (269)
220 PRK06835 DNA replication prote 96.9 0.00042 9.1E-09 74.4 2.3 41 130-170 183-226 (329)
221 PRK07993 DNA polymerase III su 96.9 0.0033 7.3E-08 67.7 9.3 78 492-578 123-200 (334)
222 COG1220 HslU ATP-dependent pro 96.9 0.00077 1.7E-08 70.3 3.9 46 129-174 49-95 (444)
223 KOG3347|consensus 96.9 0.00064 1.4E-08 62.9 2.9 33 130-162 7-39 (176)
224 TIGR00602 rad24 checkpoint pro 96.9 0.00072 1.6E-08 78.3 4.1 67 89-160 74-140 (637)
225 cd00464 SK Shikimate kinase (S 96.9 0.00078 1.7E-08 63.8 3.3 31 132-162 1-31 (154)
226 PRK13947 shikimate kinase; Pro 96.8 0.00089 1.9E-08 64.9 3.6 31 132-162 3-33 (171)
227 PRK03839 putative kinase; Prov 96.8 0.00085 1.8E-08 65.7 3.2 30 133-162 3-32 (180)
228 PF13671 AAA_33: AAA domain; P 96.8 0.00087 1.9E-08 62.6 3.1 36 133-170 2-37 (143)
229 PRK06921 hypothetical protein; 96.8 0.00084 1.8E-08 70.1 3.2 40 129-168 116-159 (266)
230 PF00158 Sigma54_activat: Sigm 96.8 0.0027 5.9E-08 61.5 6.5 40 129-168 21-63 (168)
231 PRK00625 shikimate kinase; Pro 96.7 0.001 2.3E-08 64.7 3.2 31 132-162 2-32 (173)
232 PHA02624 large T antigen; Prov 96.7 0.0013 2.8E-08 74.5 4.2 41 126-166 427-467 (647)
233 PRK06526 transposase; Provisio 96.7 0.00083 1.8E-08 69.6 2.4 39 128-166 96-137 (254)
234 PRK14532 adenylate kinase; Pro 96.7 0.0012 2.7E-08 65.0 3.5 35 132-168 2-36 (188)
235 TIGR01242 26Sp45 26S proteasom 96.7 0.00093 2E-08 73.2 2.7 77 637-713 68-144 (364)
236 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0013 2.8E-08 64.4 3.5 34 133-168 2-35 (183)
237 PRK13949 shikimate kinase; Pro 96.7 0.0013 2.8E-08 63.8 3.2 32 131-162 2-33 (169)
238 PRK15455 PrkA family serine pr 96.6 0.0019 4.1E-08 72.9 4.7 64 97-165 74-139 (644)
239 PRK14531 adenylate kinase; Pro 96.6 0.0015 3.3E-08 64.2 3.4 30 131-160 3-32 (183)
240 PRK13948 shikimate kinase; Pro 96.6 0.0021 4.6E-08 63.1 4.0 43 128-172 8-50 (182)
241 cd01428 ADK Adenylate kinase ( 96.6 0.0018 3.9E-08 64.0 3.5 33 133-167 2-34 (194)
242 COG1102 Cmk Cytidylate kinase 96.5 0.0018 3.9E-08 60.9 3.1 28 133-160 3-30 (179)
243 KOG0745|consensus 96.5 0.002 4.3E-08 69.3 3.8 46 130-175 226-272 (564)
244 PRK09183 transposase/IS protei 96.5 0.0018 3.8E-08 67.4 3.2 43 127-169 99-144 (259)
245 PRK07261 topology modulation p 96.5 0.0019 4.2E-08 62.7 3.3 31 133-163 3-33 (171)
246 PRK06762 hypothetical protein; 96.5 0.0015 3.1E-08 63.1 2.4 39 130-168 2-40 (166)
247 cd00227 CPT Chloramphenicol (C 96.5 0.0019 4.2E-08 62.9 3.1 38 130-167 2-39 (175)
248 cd02021 GntK Gluconate kinase 96.5 0.0023 5.1E-08 60.5 3.6 28 133-160 2-29 (150)
249 cd02020 CMPK Cytidine monophos 96.5 0.0021 4.5E-08 60.3 3.1 30 133-162 2-31 (147)
250 TIGR01313 therm_gnt_kin carboh 96.4 0.0023 4.9E-08 61.5 3.2 28 133-160 1-28 (163)
251 COG1239 ChlI Mg-chelatase subu 96.4 0.048 1E-06 59.2 13.4 47 507-555 185-233 (423)
252 PF00910 RNA_helicase: RNA hel 96.4 0.0017 3.6E-08 58.0 2.1 23 133-155 1-23 (107)
253 PRK06547 hypothetical protein; 96.4 0.0025 5.3E-08 62.0 3.4 35 128-162 13-47 (172)
254 PRK06217 hypothetical protein; 96.4 0.0025 5.5E-08 62.6 3.5 31 132-162 3-33 (183)
255 PF03761 DUF316: Domain of unk 96.4 0.0044 9.5E-08 65.3 5.5 131 183-315 29-188 (282)
256 PTZ00088 adenylate kinase 1; P 96.4 0.0032 7E-08 64.1 4.1 32 131-162 7-38 (229)
257 PLN02200 adenylate kinase fami 96.3 0.0033 7.1E-08 64.4 4.0 40 127-168 40-79 (234)
258 PF06309 Torsin: Torsin; Inte 96.3 0.0049 1.1E-07 56.1 4.6 38 110-153 39-76 (127)
259 PHA00729 NTP-binding motif con 96.3 0.002 4.3E-08 64.9 2.3 29 132-160 19-47 (226)
260 PRK14528 adenylate kinase; Pro 96.3 0.0031 6.8E-08 62.2 3.5 31 131-161 2-32 (186)
261 PRK13946 shikimate kinase; Pro 96.3 0.0034 7.4E-08 61.8 3.5 33 130-162 10-42 (184)
262 PRK14530 adenylate kinase; Pro 96.3 0.0033 7.1E-08 63.5 3.4 30 132-161 5-34 (215)
263 PRK02496 adk adenylate kinase; 96.2 0.0034 7.3E-08 61.7 3.3 29 133-161 4-32 (184)
264 COG1936 Predicted nucleotide k 96.2 0.003 6.5E-08 60.3 2.6 30 132-162 2-31 (180)
265 PRK05057 aroK shikimate kinase 96.2 0.0046 9.9E-08 60.2 4.0 33 130-162 4-36 (172)
266 PF13401 AAA_22: AAA domain; P 96.2 0.003 6.5E-08 57.9 2.6 38 130-167 4-49 (131)
267 PF13245 AAA_19: Part of AAA d 96.2 0.0057 1.2E-07 50.9 3.9 23 132-154 12-35 (76)
268 PRK03731 aroL shikimate kinase 96.2 0.004 8.6E-08 60.3 3.5 32 131-162 3-34 (171)
269 PRK04040 adenylate kinase; Pro 96.2 0.0041 8.8E-08 61.5 3.5 30 130-159 2-33 (188)
270 TIGR01351 adk adenylate kinase 96.1 0.0039 8.4E-08 62.8 3.2 29 133-161 2-30 (210)
271 PRK08154 anaerobic benzoate ca 96.1 0.0067 1.4E-07 64.9 5.2 36 127-162 130-165 (309)
272 PRK14527 adenylate kinase; Pro 96.1 0.0041 8.9E-08 61.6 3.3 33 128-160 4-36 (191)
273 PRK00279 adk adenylate kinase; 96.1 0.0042 9E-08 62.8 3.4 29 133-161 3-31 (215)
274 KOG0991|consensus 96.1 0.0045 9.8E-08 61.5 3.4 55 90-154 18-72 (333)
275 KOG0738|consensus 96.1 0.0019 4.1E-08 68.6 0.9 37 677-713 198-234 (491)
276 KOG0737|consensus 96.1 0.003 6.4E-08 67.0 2.1 27 687-713 88-114 (386)
277 COG0703 AroK Shikimate kinase 96.1 0.0042 9.2E-08 59.7 3.0 42 130-173 2-43 (172)
278 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0053 1.1E-07 56.8 3.5 30 128-157 20-49 (133)
279 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0046 1E-07 60.6 3.3 30 131-160 4-33 (188)
280 COG0606 Predicted ATPase with 95.9 0.0036 7.8E-08 68.7 2.0 24 129-152 197-220 (490)
281 cd01120 RecA-like_NTPases RecA 95.9 0.0076 1.6E-07 57.1 3.8 31 133-163 2-35 (165)
282 PF00406 ADK: Adenylate kinase 95.9 0.0048 1E-07 58.5 2.4 33 135-169 1-33 (151)
283 PLN02674 adenylate kinase 95.9 0.0069 1.5E-07 62.1 3.6 39 128-168 29-67 (244)
284 PF13191 AAA_16: AAA ATPase do 95.8 0.0076 1.6E-07 58.7 3.8 36 128-163 22-60 (185)
285 TIGR01817 nifA Nif-specific re 95.8 0.012 2.6E-07 67.9 6.0 65 96-168 193-260 (534)
286 PRK14526 adenylate kinase; Pro 95.8 0.0066 1.4E-07 61.1 3.3 33 133-167 3-35 (211)
287 PRK11361 acetoacetate metaboli 95.8 0.035 7.7E-07 62.7 9.7 39 130-168 166-207 (457)
288 TIGR01618 phage_P_loop phage n 95.8 0.0049 1.1E-07 62.2 2.3 22 130-151 12-33 (220)
289 TIGR02915 PEP_resp_reg putativ 95.8 0.045 9.7E-07 61.7 10.2 39 129-167 161-202 (445)
290 PF01745 IPT: Isopentenyl tran 95.8 0.0078 1.7E-07 59.5 3.4 35 132-166 3-37 (233)
291 PRK15424 propionate catabolism 95.8 0.013 2.9E-07 66.9 5.8 63 97-167 217-290 (538)
292 cd02019 NK Nucleoside/nucleoti 95.7 0.01 2.2E-07 48.3 3.5 30 133-162 2-32 (69)
293 PRK01184 hypothetical protein; 95.7 0.0078 1.7E-07 59.0 3.2 29 132-161 3-31 (184)
294 PRK04182 cytidylate kinase; Pr 95.7 0.0083 1.8E-07 58.3 3.3 28 133-160 3-30 (180)
295 PF13521 AAA_28: AAA domain; P 95.7 0.0078 1.7E-07 57.9 2.9 26 133-159 2-27 (163)
296 PRK11608 pspF phage shock prot 95.6 0.02 4.3E-07 61.8 5.9 62 97-166 4-68 (326)
297 PHA02774 E1; Provisional 95.5 0.012 2.6E-07 66.6 4.2 34 126-159 430-463 (613)
298 TIGR02173 cyt_kin_arch cytidyl 95.5 0.011 2.3E-07 57.1 3.3 29 133-161 3-31 (171)
299 COG0563 Adk Adenylate kinase a 95.5 0.0088 1.9E-07 58.5 2.5 35 132-168 2-36 (178)
300 KOG1970|consensus 95.5 0.014 3E-07 64.9 4.2 72 90-164 73-144 (634)
301 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.015 3.3E-07 59.6 4.4 40 126-165 17-59 (237)
302 PRK13765 ATP-dependent proteas 95.4 0.015 3.2E-07 67.8 4.7 99 509-609 277-398 (637)
303 PF13238 AAA_18: AAA domain; P 95.4 0.0083 1.8E-07 54.6 2.1 22 133-154 1-22 (129)
304 PLN02459 probable adenylate ki 95.4 0.014 3.1E-07 60.2 4.0 34 132-167 31-64 (261)
305 PRK05818 DNA polymerase III su 95.4 0.069 1.5E-06 55.0 8.9 45 492-541 103-147 (261)
306 PRK12338 hypothetical protein; 95.4 0.013 2.9E-07 62.2 3.7 30 129-158 3-32 (319)
307 TIGR02237 recomb_radB DNA repa 95.4 0.019 4.1E-07 57.6 4.7 39 126-164 8-49 (209)
308 cd02027 APSK Adenosine 5'-phos 95.4 0.012 2.7E-07 55.7 3.2 34 133-166 2-38 (149)
309 TIGR03689 pup_AAA proteasome A 95.3 0.0086 1.9E-07 67.8 2.3 32 682-713 173-204 (512)
310 PHA02530 pseT polynucleotide k 95.3 0.013 2.9E-07 62.2 3.5 36 131-167 3-38 (300)
311 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.016 3.5E-07 60.3 4.0 38 126-163 32-72 (259)
312 PRK12339 2-phosphoglycerate ki 95.3 0.016 3.5E-07 57.6 3.9 29 130-158 3-31 (197)
313 PF06745 KaiC: KaiC; InterPro 95.3 0.014 3E-07 59.3 3.5 40 126-165 15-58 (226)
314 cd01124 KaiC KaiC is a circadi 95.3 0.016 3.4E-07 56.8 3.7 32 133-164 2-36 (187)
315 cd01394 radB RadB. The archaea 95.3 0.019 4.1E-07 58.0 4.4 37 126-162 15-54 (218)
316 PRK11388 DNA-binding transcrip 95.3 0.026 5.7E-07 66.6 6.1 64 96-167 322-388 (638)
317 PRK10078 ribose 1,5-bisphospho 95.2 0.017 3.6E-07 57.0 3.6 27 132-158 4-30 (186)
318 PRK05973 replicative DNA helic 95.2 0.02 4.2E-07 58.5 4.2 38 126-163 60-100 (237)
319 PRK06067 flagellar accessory p 95.2 0.021 4.6E-07 58.4 4.6 38 126-163 21-61 (234)
320 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.014 3.1E-07 63.4 3.5 30 127-156 59-88 (362)
321 KOG0651|consensus 95.2 0.015 3.1E-07 60.4 3.2 66 61-126 185-270 (388)
322 TIGR02329 propionate_PrpR prop 95.2 0.026 5.6E-07 64.6 5.5 64 96-167 209-275 (526)
323 PF13086 AAA_11: AAA domain; P 95.2 0.019 4.1E-07 57.9 4.1 22 133-154 20-41 (236)
324 PF12774 AAA_6: Hydrolytic ATP 95.2 0.021 4.6E-07 58.2 4.3 40 129-168 31-70 (231)
325 PF13177 DNA_pol3_delta2: DNA 95.1 0.029 6.2E-07 54.0 4.8 37 492-532 117-153 (162)
326 PRK15429 formate hydrogenlyase 95.1 0.03 6.5E-07 66.7 6.0 63 97-167 374-439 (686)
327 PRK06696 uridine kinase; Valid 95.1 0.021 4.5E-07 58.0 4.0 40 128-167 20-62 (223)
328 PRK14529 adenylate kinase; Pro 95.1 0.014 3E-07 59.1 2.6 33 133-167 3-35 (223)
329 PF13173 AAA_14: AAA domain 95.1 0.021 4.6E-07 52.5 3.6 35 131-165 3-39 (128)
330 PRK05541 adenylylsulfate kinas 95.1 0.017 3.8E-07 56.2 3.2 28 128-155 5-32 (176)
331 PF06414 Zeta_toxin: Zeta toxi 95.0 0.019 4.2E-07 57.2 3.6 43 128-170 13-56 (199)
332 COG1221 PspF Transcriptional r 95.0 0.031 6.8E-07 61.0 5.2 66 95-168 74-143 (403)
333 PRK09361 radB DNA repair and r 94.9 0.028 6.1E-07 57.1 4.5 38 126-163 19-59 (225)
334 PRK08233 hypothetical protein; 94.9 0.024 5.2E-07 55.2 3.8 25 131-155 4-28 (182)
335 PLN02199 shikimate kinase 94.9 0.022 4.9E-07 59.6 3.6 34 129-162 101-134 (303)
336 PRK08533 flagellar accessory p 94.9 0.031 6.7E-07 57.1 4.5 37 126-162 20-59 (230)
337 TIGR03574 selen_PSTK L-seryl-t 94.8 0.02 4.3E-07 59.3 3.1 31 133-163 2-35 (249)
338 COG4619 ABC-type uncharacteriz 94.8 0.02 4.4E-07 54.4 2.8 28 125-152 24-51 (223)
339 COG0467 RAD55 RecA-superfamily 94.8 0.03 6.6E-07 58.2 4.5 41 125-165 18-61 (260)
340 PRK09825 idnK D-gluconate kina 94.8 0.027 5.8E-07 55.0 3.8 27 131-157 4-30 (176)
341 PRK13808 adenylate kinase; Pro 94.8 0.021 4.6E-07 61.1 3.1 34 133-168 3-36 (333)
342 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.032 6.9E-07 56.8 4.4 38 126-163 16-56 (229)
343 COG3829 RocR Transcriptional r 94.8 0.064 1.4E-06 60.0 6.9 69 92-168 238-309 (560)
344 PRK10536 hypothetical protein; 94.7 0.032 6.8E-07 57.4 4.1 22 132-153 76-97 (262)
345 PRK11545 gntK gluconate kinase 94.7 0.021 4.5E-07 55.1 2.7 24 136-159 1-24 (163)
346 PRK10820 DNA-binding transcrip 94.7 0.045 9.8E-07 62.9 5.8 66 94-167 199-267 (520)
347 PRK10365 transcriptional regul 94.6 0.13 2.8E-06 57.7 9.4 40 129-168 161-203 (441)
348 KOG1514|consensus 94.6 0.26 5.6E-06 56.7 11.4 108 507-614 539-658 (767)
349 KOG3354|consensus 94.6 0.028 6.1E-07 52.5 3.1 35 128-162 9-44 (191)
350 PRK14738 gmk guanylate kinase; 94.6 0.027 5.8E-07 56.5 3.3 34 118-153 3-36 (206)
351 TIGR02974 phageshock_pspF psp 94.6 0.036 7.8E-07 59.8 4.4 39 129-167 21-62 (329)
352 PRK04328 hypothetical protein; 94.6 0.038 8.2E-07 57.2 4.4 39 126-164 19-60 (249)
353 PF07931 CPT: Chloramphenicol 94.6 0.02 4.4E-07 55.6 2.2 39 132-170 3-41 (174)
354 PF05729 NACHT: NACHT domain 94.6 0.023 4.9E-07 54.1 2.5 24 131-154 1-24 (166)
355 TIGR02012 tigrfam_recA protein 94.6 0.034 7.4E-07 59.4 4.0 39 126-164 51-92 (321)
356 PRK00889 adenylylsulfate kinas 94.5 0.036 7.9E-07 53.8 3.9 35 129-163 3-40 (175)
357 PF14532 Sigma54_activ_2: Sigm 94.5 0.019 4.1E-07 53.6 1.7 35 129-163 20-57 (138)
358 PF02367 UPF0079: Uncharacteri 94.4 0.023 5E-07 51.8 2.2 43 128-171 13-57 (123)
359 COG3842 PotA ABC-type spermidi 94.4 0.027 5.8E-07 60.7 2.9 25 128-152 27-53 (352)
360 PRK05800 cobU adenosylcobinami 94.4 0.032 6.9E-07 54.2 3.1 32 132-163 3-34 (170)
361 COG4088 Predicted nucleotide k 94.4 0.024 5.2E-07 55.6 2.2 32 132-163 3-37 (261)
362 TIGR02655 circ_KaiC circadian 94.4 0.039 8.5E-07 62.8 4.3 40 126-165 17-60 (484)
363 PF13555 AAA_29: P-loop contai 94.3 0.037 7.9E-07 43.9 2.8 21 132-152 25-45 (62)
364 PF03266 NTPase_1: NTPase; In 94.3 0.029 6.3E-07 54.3 2.7 22 133-154 2-23 (168)
365 cd01123 Rad51_DMC1_radA Rad51_ 94.3 0.049 1.1E-06 55.5 4.5 28 126-153 15-42 (235)
366 cd02022 DPCK Dephospho-coenzym 94.2 0.04 8.8E-07 53.9 3.6 28 133-161 2-29 (179)
367 PLN02165 adenylate isopentenyl 94.2 0.041 8.8E-07 58.8 3.8 33 130-162 43-75 (334)
368 cd02024 NRK1 Nicotinamide ribo 94.2 0.039 8.4E-07 54.4 3.4 30 133-162 2-32 (187)
369 TIGR03880 KaiC_arch_3 KaiC dom 94.2 0.051 1.1E-06 55.1 4.4 40 126-165 12-54 (224)
370 cd00820 PEPCK_HprK Phosphoenol 94.2 0.031 6.6E-07 49.7 2.4 26 126-151 11-36 (107)
371 PRK11823 DNA repair protein Ra 94.2 0.044 9.5E-07 61.6 4.2 40 126-165 76-118 (446)
372 TIGR02322 phosphon_PhnN phosph 94.2 0.033 7.2E-07 54.3 2.9 25 132-156 3-27 (179)
373 TIGR03263 guanyl_kin guanylate 94.2 0.033 7.3E-07 54.2 2.9 26 132-157 3-28 (180)
374 cd00983 recA RecA is a bacter 94.2 0.045 9.7E-07 58.5 4.0 39 126-164 51-92 (325)
375 PRK00300 gmk guanylate kinase; 94.2 0.044 9.5E-07 54.7 3.7 28 128-155 3-30 (205)
376 PRK06761 hypothetical protein; 94.2 0.041 8.9E-07 57.6 3.6 32 131-162 4-35 (282)
377 PRK08356 hypothetical protein; 94.1 0.046 1E-06 54.2 3.7 31 131-164 6-36 (195)
378 PRK05480 uridine/cytidine kina 94.0 0.058 1.3E-06 54.1 4.2 27 129-155 5-31 (209)
379 TIGR00017 cmk cytidylate kinas 93.9 0.045 9.7E-07 55.4 3.2 29 132-160 4-32 (217)
380 PLN03210 Resistant to P. syrin 93.9 0.064 1.4E-06 67.8 5.2 75 75-157 160-234 (1153)
381 PRK00091 miaA tRNA delta(2)-is 93.8 0.055 1.2E-06 57.6 3.9 34 130-163 4-37 (307)
382 PRK00771 signal recognition pa 93.8 0.1 2.2E-06 58.2 6.1 36 128-163 93-131 (437)
383 PRK04220 2-phosphoglycerate ki 93.8 0.051 1.1E-06 57.3 3.5 30 128-157 90-119 (301)
384 PTZ00202 tuzin; Provisional 93.8 0.12 2.6E-06 56.9 6.3 58 100-164 263-320 (550)
385 cd00984 DnaB_C DnaB helicase C 93.8 0.064 1.4E-06 55.0 4.1 38 126-163 9-50 (242)
386 COG4525 TauB ABC-type taurine 93.8 0.048 1E-06 53.2 2.9 28 125-152 26-53 (259)
387 COG3839 MalK ABC-type sugar tr 93.8 0.041 8.9E-07 58.9 2.7 25 128-152 27-51 (338)
388 COG4178 ABC-type uncharacteriz 93.7 0.043 9.3E-07 62.8 2.9 29 125-153 414-442 (604)
389 cd02028 UMPK_like Uridine mono 93.7 0.055 1.2E-06 53.0 3.4 34 133-166 2-38 (179)
390 COG3267 ExeA Type II secretory 93.7 1.9 4.1E-05 44.2 14.1 73 531-604 190-266 (269)
391 COG3265 GntK Gluconate kinase 93.7 0.043 9.3E-07 51.1 2.3 24 137-160 2-25 (161)
392 TIGR02236 recomb_radA DNA repa 93.6 0.077 1.7E-06 56.8 4.6 29 126-154 91-119 (310)
393 PF13479 AAA_24: AAA domain 93.6 0.048 1E-06 55.0 2.8 21 130-150 3-23 (213)
394 PF01583 APS_kinase: Adenylyls 93.6 0.054 1.2E-06 51.6 2.9 40 131-170 3-45 (156)
395 PRK14737 gmk guanylate kinase; 93.6 0.055 1.2E-06 53.4 3.1 27 129-155 3-29 (186)
396 TIGR00235 udk uridine kinase. 93.6 0.056 1.2E-06 54.2 3.2 27 129-155 3-31 (207)
397 PF13604 AAA_30: AAA domain; P 93.5 0.094 2E-06 52.1 4.7 35 131-165 19-56 (196)
398 cd01393 recA_like RecA is a b 93.5 0.055 1.2E-06 54.8 3.1 29 126-154 15-43 (226)
399 cd00071 GMPK Guanosine monopho 93.5 0.066 1.4E-06 50.0 3.3 26 133-158 2-27 (137)
400 PRK13975 thymidylate kinase; P 93.4 0.053 1.2E-06 53.6 2.8 28 131-158 3-30 (196)
401 PRK12726 flagellar biosynthesi 93.4 0.098 2.1E-06 56.8 4.9 50 105-154 180-230 (407)
402 PF00005 ABC_tran: ABC transpo 93.4 0.044 9.6E-07 50.7 2.0 30 126-155 7-36 (137)
403 cd01128 rho_factor Transcripti 93.4 0.089 1.9E-06 54.3 4.4 30 128-157 14-43 (249)
404 PRK00023 cmk cytidylate kinase 93.4 0.053 1.2E-06 55.2 2.7 30 131-160 5-34 (225)
405 PRK10646 ADP-binding protein; 93.3 0.077 1.7E-06 50.3 3.5 42 128-170 26-69 (153)
406 PRK03846 adenylylsulfate kinas 93.3 0.078 1.7E-06 52.7 3.8 39 129-167 23-64 (198)
407 PRK08099 bifunctional DNA-bind 93.3 0.068 1.5E-06 59.1 3.6 31 130-160 219-249 (399)
408 TIGR00064 ftsY signal recognit 93.3 0.16 3.5E-06 53.2 6.2 27 128-154 70-96 (272)
409 PRK14730 coaE dephospho-CoA ki 93.3 0.071 1.5E-06 53.0 3.4 29 132-160 3-31 (195)
410 cd02023 UMPK Uridine monophosp 93.3 0.074 1.6E-06 52.8 3.6 22 133-154 2-23 (198)
411 KOG0060|consensus 93.3 0.056 1.2E-06 60.7 2.8 28 125-152 456-483 (659)
412 PRK04301 radA DNA repair and r 93.2 0.095 2.1E-06 56.3 4.5 29 126-154 98-126 (317)
413 COG1618 Predicted nucleotide k 93.2 0.064 1.4E-06 50.7 2.7 35 128-162 3-37 (179)
414 TIGR01526 nadR_NMN_Atrans nico 93.2 0.061 1.3E-06 57.9 3.0 35 130-164 162-196 (325)
415 cd01672 TMPK Thymidine monopho 93.2 0.086 1.9E-06 51.9 3.9 32 133-164 3-37 (200)
416 TIGR00455 apsK adenylylsulfate 93.2 0.086 1.9E-06 51.7 3.8 39 128-166 16-57 (184)
417 COG1116 TauB ABC-type nitrate/ 93.1 0.065 1.4E-06 54.4 2.8 27 127-153 26-52 (248)
418 cd03115 SRP The signal recogni 93.1 0.09 1.9E-06 50.9 3.7 31 133-163 3-36 (173)
419 TIGR00174 miaA tRNA isopenteny 93.1 0.091 2E-06 55.3 4.0 35 133-167 2-36 (287)
420 COG3604 FhlA Transcriptional r 93.1 0.12 2.7E-06 57.1 5.0 65 97-169 221-288 (550)
421 PLN02840 tRNA dimethylallyltra 93.0 0.094 2E-06 57.8 4.2 37 130-166 21-57 (421)
422 COG0324 MiaA tRNA delta(2)-iso 93.0 0.09 1.9E-06 55.5 3.8 82 509-594 190-273 (308)
423 PRK09518 bifunctional cytidyla 93.0 0.069 1.5E-06 63.8 3.3 31 132-162 3-33 (712)
424 PRK00081 coaE dephospho-CoA ki 93.0 0.098 2.1E-06 51.9 3.9 30 131-161 3-32 (194)
425 PRK05537 bifunctional sulfate 93.0 0.12 2.7E-06 59.7 5.2 44 129-172 391-438 (568)
426 PRK12337 2-phosphoglycerate ki 92.9 0.084 1.8E-06 58.7 3.6 31 128-158 253-283 (475)
427 cd01130 VirB11-like_ATPase Typ 92.9 0.075 1.6E-06 52.3 3.0 29 127-155 22-50 (186)
428 PRK13951 bifunctional shikimat 92.9 0.081 1.8E-06 60.1 3.6 31 132-162 2-32 (488)
429 cd01918 HprK_C HprK/P, the bif 92.9 0.095 2.1E-06 49.5 3.5 24 130-153 14-37 (149)
430 PRK10416 signal recognition pa 92.9 0.14 3.1E-06 54.8 5.3 27 128-154 112-138 (318)
431 PF00485 PRK: Phosphoribulokin 92.9 0.06 1.3E-06 53.4 2.2 24 133-156 2-25 (194)
432 cd01131 PilT Pilus retraction 92.9 0.067 1.5E-06 53.3 2.6 23 133-155 4-26 (198)
433 PF00931 NB-ARC: NB-ARC domain 92.9 0.11 2.4E-06 54.6 4.4 62 510-575 130-195 (287)
434 PF00519 PPV_E1_C: Papillomavi 92.9 0.086 1.9E-06 56.8 3.4 35 126-160 258-292 (432)
435 cd01121 Sms Sms (bacterial rad 92.9 0.11 2.3E-06 57.0 4.3 40 126-165 78-120 (372)
436 cd00046 DEXDc DEAD-like helica 92.8 0.072 1.6E-06 48.3 2.5 25 131-155 1-25 (144)
437 PRK09354 recA recombinase A; P 92.8 0.11 2.3E-06 56.2 4.1 40 126-165 56-98 (349)
438 PRK11889 flhF flagellar biosyn 92.8 0.14 3.1E-06 55.8 5.0 26 129-154 240-265 (436)
439 cd03283 ABC_MutS-like MutS-lik 92.8 0.086 1.9E-06 52.6 3.1 27 126-152 21-47 (199)
440 PRK13477 bifunctional pantoate 92.7 0.094 2E-06 59.5 3.7 31 129-159 283-313 (512)
441 COG1855 ATPase (PilT family) [ 92.7 0.075 1.6E-06 57.8 2.7 27 128-154 261-287 (604)
442 TIGR02655 circ_KaiC circadian 92.7 0.11 2.4E-06 59.2 4.3 43 126-168 259-304 (484)
443 cd01122 GP4d_helicase GP4d_hel 92.7 0.11 2.4E-06 54.3 4.0 38 126-163 26-67 (271)
444 PRK13764 ATPase; Provisional 92.7 0.064 1.4E-06 61.9 2.3 28 128-155 255-282 (602)
445 PF08298 AAA_PrkA: PrkA AAA do 92.7 0.13 2.8E-06 55.1 4.4 57 100-161 62-120 (358)
446 cd03247 ABCC_cytochrome_bd The 92.5 0.088 1.9E-06 51.4 2.8 30 125-154 23-52 (178)
447 PRK14021 bifunctional shikimat 92.5 0.087 1.9E-06 60.8 3.2 42 131-174 7-48 (542)
448 TIGR02782 TrbB_P P-type conjug 92.5 0.11 2.4E-06 55.2 3.7 27 128-154 130-156 (299)
449 COG5271 MDN1 AAA ATPase contai 92.5 0.1 2.2E-06 64.7 3.5 37 129-165 1542-1578(4600)
450 TIGR03575 selen_PSTK_euk L-ser 92.4 0.12 2.7E-06 55.6 3.9 35 133-167 2-40 (340)
451 PRK07276 DNA polymerase III su 92.4 1.7 3.8E-05 45.8 12.4 81 492-585 119-199 (290)
452 PRK09376 rho transcription ter 92.4 0.093 2E-06 57.1 3.0 24 133-156 172-195 (416)
453 PF02562 PhoH: PhoH-like prote 92.4 0.076 1.6E-06 53.0 2.1 23 132-154 21-43 (205)
454 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.3 0.092 2E-06 52.9 2.7 29 126-154 26-54 (218)
455 KOG0990|consensus 92.3 0.081 1.7E-06 55.4 2.2 26 132-157 64-89 (360)
456 PF12775 AAA_7: P-loop contain 92.3 0.08 1.7E-06 55.5 2.2 45 509-556 148-195 (272)
457 KOG0740|consensus 92.2 0.068 1.5E-06 58.7 1.7 35 678-712 140-174 (428)
458 cd00544 CobU Adenosylcobinamid 92.2 0.15 3.2E-06 49.5 3.9 31 133-163 2-32 (169)
459 COG1124 DppF ABC-type dipeptid 92.2 0.097 2.1E-06 52.9 2.7 26 127-152 30-55 (252)
460 cd03269 ABC_putative_ATPase Th 92.2 0.1 2.2E-06 52.3 2.8 29 126-154 22-50 (210)
461 PLN03187 meiotic recombination 92.1 0.1 2.2E-06 56.4 2.9 29 126-154 122-150 (344)
462 TIGR00152 dephospho-CoA kinase 92.1 0.13 2.9E-06 50.6 3.5 29 133-161 2-30 (188)
463 PRK13833 conjugal transfer pro 92.1 0.13 2.9E-06 55.0 3.7 27 128-154 142-168 (323)
464 COG0645 Predicted kinase [Gene 92.0 0.14 3.1E-06 48.9 3.4 30 131-160 2-31 (170)
465 TIGR00376 DNA helicase, putati 92.0 0.11 2.5E-06 60.9 3.4 32 131-162 174-208 (637)
466 cd03262 ABC_HisP_GlnQ_permease 92.0 0.11 2.4E-06 52.1 2.8 29 126-154 22-50 (213)
467 PRK13851 type IV secretion sys 92.0 0.1 2.2E-06 56.5 2.7 30 126-155 158-187 (344)
468 PRK12608 transcription termina 92.0 0.13 2.9E-06 55.8 3.5 27 15-41 38-64 (380)
469 TIGR03410 urea_trans_UrtE urea 92.0 0.11 2.3E-06 52.9 2.8 29 126-154 22-50 (230)
470 TIGR02238 recomb_DMC1 meiotic 92.0 0.11 2.3E-06 55.7 2.8 28 126-153 92-119 (313)
471 cd03238 ABC_UvrA The excision 91.9 0.16 3.4E-06 49.7 3.6 27 126-152 17-43 (176)
472 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.9 0.12 2.5E-06 48.7 2.7 29 126-154 22-50 (144)
473 PF01202 SKI: Shikimate kinase 91.9 0.091 2E-06 50.2 2.0 33 139-173 1-33 (158)
474 PRK14722 flhF flagellar biosyn 91.8 0.12 2.5E-06 56.5 2.9 28 127-154 134-161 (374)
475 PRK14733 coaE dephospho-CoA ki 91.8 0.18 3.8E-06 50.4 4.0 31 130-160 6-36 (204)
476 cd03228 ABCC_MRP_Like The MRP 91.8 0.12 2.7E-06 50.0 2.9 30 126-155 24-53 (171)
477 KOG2383|consensus 91.8 0.096 2.1E-06 56.4 2.2 26 127-152 111-136 (467)
478 TIGR03499 FlhF flagellar biosy 91.8 0.23 4.9E-06 52.4 5.0 27 128-154 192-218 (282)
479 cd01673 dNK Deoxyribonucleosid 91.8 0.12 2.5E-06 51.1 2.7 27 133-159 2-28 (193)
480 COG1428 Deoxynucleoside kinase 91.8 0.13 2.9E-06 50.9 3.0 30 131-160 5-34 (216)
481 PRK07667 uridine kinase; Provi 91.7 0.18 4E-06 49.9 4.0 36 131-166 18-56 (193)
482 TIGR02688 conserved hypothetic 91.7 0.11 2.4E-06 57.0 2.6 27 127-153 206-232 (449)
483 TIGR02315 ABC_phnC phosphonate 91.7 0.12 2.6E-06 53.0 2.8 29 126-154 24-52 (243)
484 PRK09302 circadian clock prote 91.7 0.17 3.6E-06 58.2 4.2 40 126-165 27-70 (509)
485 PRK10247 putative ABC transpor 91.7 0.12 2.7E-06 52.4 2.8 29 126-154 29-57 (225)
486 PTZ00035 Rad51 protein; Provis 91.6 0.13 2.9E-06 55.6 3.1 30 126-155 114-143 (337)
487 cd03216 ABC_Carb_Monos_I This 91.6 0.12 2.7E-06 49.6 2.6 29 126-154 22-50 (163)
488 PF01637 Arch_ATPase: Archaeal 91.6 0.12 2.6E-06 52.1 2.6 82 492-576 139-228 (234)
489 PF08477 Miro: Miro-like prote 91.6 0.14 3E-06 45.9 2.8 24 133-156 2-25 (119)
490 TIGR00416 sms DNA repair prote 91.6 0.19 4.1E-06 56.7 4.4 40 126-165 90-132 (454)
491 cd03258 ABC_MetN_methionine_tr 91.6 0.13 2.8E-06 52.5 2.8 29 126-154 27-55 (233)
492 PRK07132 DNA polymerase III su 91.6 1.4 3E-05 46.8 10.7 56 492-552 105-160 (299)
493 cd03256 ABC_PhnC_transporter A 91.5 0.13 2.8E-06 52.7 2.8 29 126-154 23-51 (241)
494 cd03226 ABC_cobalt_CbiO_domain 91.5 0.13 2.7E-06 51.4 2.7 28 127-154 23-50 (205)
495 TIGR03608 L_ocin_972_ABC putat 91.5 0.13 2.8E-06 51.3 2.7 28 127-154 21-48 (206)
496 TIGR01166 cbiO cobalt transpor 91.5 0.13 2.9E-06 50.6 2.8 29 126-154 14-42 (190)
497 cd03292 ABC_FtsE_transporter F 91.5 0.13 2.8E-06 51.7 2.7 29 126-154 23-51 (214)
498 PF13476 AAA_23: AAA domain; P 91.5 0.08 1.7E-06 52.1 1.2 29 127-155 15-44 (202)
499 PRK04296 thymidine kinase; Pro 91.5 0.18 3.9E-06 49.9 3.6 30 132-161 4-36 (190)
500 TIGR02858 spore_III_AA stage I 91.4 0.13 2.9E-06 53.7 2.8 25 131-155 112-136 (270)
No 1
>KOG0733|consensus
Probab=100.00 E-value=5.2e-67 Score=559.62 Aligned_cols=331 Identities=28% Similarity=0.472 Sum_probs=270.9
Q ss_pred CccccCCCCCcHHHHH--HHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeec
Q psy6523 95 GARFDDGAGGDNEVQR--TMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 172 (713)
Q Consensus 95 ~~r~~d~iG~~~~~~~--~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~G 172 (713)
.+.|.|++|.++.+.+ .+..++++|+.|..+|+.||||||||||||||||+||+|+|+|+++||++|++++++|+++|
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 5678899998887663 44555899999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccc
Q psy6523 173 ERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252 (713)
Q Consensus 173 es~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~ 252 (713)
||| .+|+..|+.+.+..||++||||++.+-..
T Consensus 266 ESE----------------kkiRelF~~A~~~aPcivFiDeIDAI~pk-------------------------------- 297 (802)
T KOG0733|consen 266 ESE----------------KKIRELFDQAKSNAPCIVFIDEIDAITPK-------------------------------- 297 (802)
T ss_pred ccH----------------HHHHHHHHHHhccCCeEEEeecccccccc--------------------------------
Confidence 998 89999999999999999999998652100
Q ss_pred cCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCC
Q psy6523 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG 332 (713)
Q Consensus 253 ~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~ 332 (713)
T Consensus 298 -------------------------------------------------------------------------------- 297 (802)
T KOG0733|consen 298 -------------------------------------------------------------------------------- 297 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHHHHH
Q psy6523 333 QIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDIQAV 412 (713)
Q Consensus 333 ~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (713)
|
T Consensus 298 -----------------------------------------------------------R-------------------- 298 (802)
T KOG0733|consen 298 -----------------------------------------------------------R-------------------- 298 (802)
T ss_pred -----------------------------------------------------------h--------------------
Confidence 0
Q ss_pred HHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHHHH
Q psy6523 413 IKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLRE 492 (713)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 492 (713)
-..+++..+|
T Consensus 299 ----------------------------------------------------------------------e~aqreMErR 308 (802)
T KOG0733|consen 299 ----------------------------------------------------------------------EEAQREMERR 308 (802)
T ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Confidence 0014566789
Q ss_pred HHHhhhhcccCCCCC----CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHH
Q psy6523 493 VVETPLLHLDGFDPR----GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELL 568 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~----~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 568 (713)
+|.|||+.||++... +.|+|||||||||.|||||+|+||||++|.+++|++.+|.+||+..++++.++.++|+..|
T Consensus 309 iVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~ql 388 (802)
T KOG0733|consen 309 IVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQL 388 (802)
T ss_pred HHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHH
Confidence 999999999999544 5699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc----cccc------CCCCchhhhhHH-HHHHH
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK----IINA------DSENPKYIINVK-QFAKF 637 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~----~~~~------~~~~~~~~i~~~-~~~~~ 637 (713)
|+.|+||+||||.+||.+|++.|++|..+..+. -...+..+.. ..+. ...+...+.... -..++
T Consensus 389 A~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~-----p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~ 463 (802)
T KOG0733|consen 389 AKLTPGFVGADLMALCREAAFVAIKRILDQSSS-----PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDA 463 (802)
T ss_pred HhcCCCccchhHHHHHHHHHHHHHHHHhhcccC-----ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHH
Confidence 999999999999999999999999984332110 0000000000 0000 000111111111 12456
Q ss_pred HhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 638 VVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 638 ~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+.....+.+++.+ ..++|+.+||..|++ .+|||++||+|.+||+|+|+|||||++||.||+++|+||+||
T Consensus 464 i~~~~d~~S~E~~---~~L~i~~eDF~~Al~---~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~ 533 (802)
T KOG0733|consen 464 ILNNPDPLSKELL---EGLSIKFEDFEEALS---KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKR 533 (802)
T ss_pred HHhCCCCcChHHh---ccceecHHHHHHHHH---hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccC
Confidence 6666666664433 346799999999998 899999999999999999999999999999999999999997
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-56 Score=457.85 Aligned_cols=253 Identities=49% Similarity=0.833 Sum_probs=222.6
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++.-|.++++|++|.++.++ +.+.-.|++|+.|.++||.||+|||||||||||||+||||+|+++++.|+.|.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 46668889999888777544 344445899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+.||+||.. .=++..|+-+...+|+|+|+||++.+-..
T Consensus 222 VqKYiGEGa----------------RlVRelF~lArekaPsIIFiDEIDAIg~k-------------------------- 259 (406)
T COG1222 222 VQKYIGEGA----------------RLVRELFELAREKAPSIIFIDEIDAIGAK-------------------------- 259 (406)
T ss_pred HHHHhccch----------------HHHHHHHHHHhhcCCeEEEEechhhhhcc--------------------------
Confidence 999999964 34677899999999999999998662100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
+|+
T Consensus 260 ----------------------------R~d------------------------------------------------- 262 (406)
T COG1222 260 ----------------------------RFD------------------------------------------------- 262 (406)
T ss_pred ----------------------------ccc-------------------------------------------------
Confidence 000
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
T Consensus 263 -------------------------------------------------------------------------------- 262 (406)
T COG1222 263 -------------------------------------------------------------------------------- 262 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
+..||
T Consensus 263 -----------------------------------------------------------------------~~t~g---- 267 (406)
T COG1222 263 -----------------------------------------------------------------------SGTSG---- 267 (406)
T ss_pred -----------------------------------------------------------------------CCCCc----
Confidence 00011
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
..+.+|.+-+||++||||++.++|=||+||||||.|||||+||||||+.|+||+||.+.|.+||+.|.+++.+..++||+
T Consensus 268 DrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e 347 (406)
T COG1222 268 DREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE 347 (406)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH
Confidence 13556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~ 616 (713)
.||+.|+|+|||||+++|.+|.|.|+|+.+..|+++||..|++++.....
T Consensus 348 ~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 348 LLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999876543
No 3
>KOG0730|consensus
Probab=100.00 E-value=5.9e-54 Score=467.09 Aligned_cols=443 Identities=25% Similarity=0.402 Sum_probs=332.0
Q ss_pred HHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeecceeecccCCCCCCCCCcc
Q psy6523 111 TMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNR 190 (713)
Q Consensus 111 ~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~Ges~~~~~~~~~~~~~~~~ 190 (713)
.+...+.+|..|..+|+.+|+|+|+|||||||||++++|+|+|.++.++.+++++++++|.||++
T Consensus 199 ~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte--------------- 263 (693)
T KOG0730|consen 199 LVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE--------------- 263 (693)
T ss_pred HHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH---------------
Confidence 33334899999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccccccCcCC-chhhhhhccCceeeeeee---echhhHHhhcccccCCCCCCceEEEEccccCCcccccceEE--
Q psy6523 191 MDRIVGGWTTEVNEY-PWVVALEQAGKFFCGGTL---ISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIET-- 264 (713)
Q Consensus 191 ~~rI~~g~~~~~~~~-P~~~~l~e~~~~~cggsl---I~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~-- 264 (713)
..++..|+.+...+ |.+++++|.+....+..- +..|.+.+-...++. -.....+|+++++++++++|+.+.+
T Consensus 264 -~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg-~~~~~~vivl~atnrp~sld~alRRgR 341 (693)
T KOG0730|consen 264 -SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDG-LKPDAKVIVLAATNRPDSLDPALRRGR 341 (693)
T ss_pred -HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhh-CcCcCcEEEEEecCCccccChhhhcCC
Confidence 56666777777777 999999999886543322 344554444444433 3367789999999999999988873
Q ss_pred EEeeEEeeCCCCCc---------CCCCCCccceEEE--ecCCCCCCCCCc----ccccCCC-------------------
Q psy6523 265 RRVVKVLTHPKYNA---------QGAKSHDHDIALL--KLDTPLEFKPTV----SPVCLPQ------------------- 310 (713)
Q Consensus 265 ~~v~~ii~h~~~~~---------~~~~~~~~diall--~L~~p~~~~~~i----~~icl~~------------------- 310 (713)
..-.--|.-|+-.. ...+. ..|.-+. ...++-.....+ +...+..
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~-~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa 420 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNL-LSDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSA 420 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCC-cchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchh
Confidence 22222233332110 00000 0011111 111111111111 1111111
Q ss_pred CCCccCCCceEEEeeccccCCCCcchhccc-ccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccc------c
Q psy6523 311 LGEKFTQRTGTVVGWGRVEESGQIASDLRA-TQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTL------D 383 (713)
Q Consensus 311 ~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~-~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l------~ 383 (713)
.++.+ -...-++|.+.+..+++...|++ ..+|+-......++. -..-.|.+.+|+++|.+++ +
T Consensus 421 ~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G--------i~ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 421 LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG--------ISPPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc--------CCCCceEEEECCCCcchHHHHHHHhh
Confidence 11111 11222789998888888888874 445555555555432 1234688899999999966 8
Q ss_pred HhhHHHHHHhcCCccchhhhhHHHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCcc
Q psy6523 384 EADIALLKSYGQGQYTKSIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPT 463 (713)
Q Consensus 384 e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s 463 (713)
++.++|+.-.|++.+.+++++.|+.++++|++.+ .+.||
T Consensus 491 e~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR-----------------------------------------~~aP~ 529 (693)
T KOG0730|consen 491 EAGMNFLSVKGPELFSKYVGESERAIREVFRKAR-----------------------------------------QVAPC 529 (693)
T ss_pred hhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh-----------------------------------------hcCCe
Confidence 9999999999999999999999999999999977 35677
Q ss_pred chhcccccCCCcccccccccHHHHHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCH
Q psy6523 464 VTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDL 543 (713)
Q Consensus 464 ~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~ 543 (713)
+++.+.++......+..++ +...|++++||++|||+...++|+|||||||||.||+||+||||||+.||||+||.
T Consensus 530 IiFfDEiDsi~~~R~g~~~-----~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 530 IIFFDEIDALAGSRGGSSS-----GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred EEehhhHHhHhhccCCCcc-----chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 8877777766665542222 66679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCC
Q psy6523 544 EGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSE 623 (713)
Q Consensus 544 ~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~ 623 (713)
++|.+||+.+++++++.+++|+..||+.|+|||||||.++|++|++.|+++...
T Consensus 605 ~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------------------------- 658 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------------------------- 658 (693)
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 999999999999999999999999999999999999999999999999987532
Q ss_pred CchhhhhHHHHHHHHhhcCCCCCccccccccc
Q psy6523 624 NPKYIINVKQFAKFVVDLADSVAPTDIEEGMR 655 (713)
Q Consensus 624 ~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~ 655 (713)
...|...||.+++...+++++..+++.|..
T Consensus 659 --a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~ 688 (693)
T KOG0730|consen 659 --ATEITWQHFEEALKAVRPSLTSELLEKYED 688 (693)
T ss_pred --cccccHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 223456677777788888888888877653
No 4
>KOG0733|consensus
Probab=100.00 E-value=4.4e-52 Score=445.14 Aligned_cols=276 Identities=33% Similarity=0.524 Sum_probs=230.9
Q ss_pred hhhcCCccccCCCCCcH---HHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDN---EVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~---~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
+-.+|.++|+|++++.+ ++...|.+.+++|+.|+.+|+.+|.||||+||||||||+||+|+|+|.|++|+.|.++|+
T Consensus 502 F~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred ceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 45678889999766554 344566777899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+|||| ..|+..|..+...+||++|+||.+..+..+
T Consensus 582 lNkYVGESE----------------rAVR~vFqRAR~saPCVIFFDEiDaL~p~R------------------------- 620 (802)
T KOG0733|consen 582 LNKYVGESE----------------RAVRQVFQRARASAPCVIFFDEIDALVPRR------------------------- 620 (802)
T ss_pred HHHHhhhHH----------------HHHHHHHHHhhcCCCeEEEecchhhcCccc-------------------------
Confidence 999999998 789999999999999999999986622100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 621 -------------------------------------------------------------------------------- 620 (802)
T KOG0733|consen 621 -------------------------------------------------------------------------------- 620 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
+.+
T Consensus 621 -------------------------------------------------------------------~~~---------- 623 (802)
T KOG0733|consen 621 -------------------------------------------------------------------SDE---------- 623 (802)
T ss_pred -------------------------------------------------------------------CCC----------
Confidence 000
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
+
T Consensus 624 ---------------------------------------------------------------------------~---- 624 (802)
T KOG0733|consen 624 ---------------------------------------------------------------------------G---- 624 (802)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhc--cCCCccccc
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHAR--SMSVERDIR 564 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~--~~~~~~~~~ 564 (713)
.....|+|||||++|||++.+.+|+|||||||||.||||++||||||+.+||++|+.++|.+||+.+++ +.++++|+|
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVd 704 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVD 704 (802)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccC
Confidence 011239999999999999999999999999999999999999999999999999999999999999999 778889999
Q ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcC
Q psy6523 565 FELLARLCP--NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLA 642 (713)
Q Consensus 565 ~~~la~~t~--g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 642 (713)
++.||+.+. |||||||.+||++|++.|+++....+.. +..+... ......++.+||..++..++
T Consensus 705 l~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~------------~~~~~~~--~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 705 LDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS------------SEDDVTV--RSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc------------cCcccce--eeeeeeecHHHHHHHHHhcC
Confidence 999999877 9999999999999999999874321111 1111100 01134578899999999999
Q ss_pred CCCCcccccccccc
Q psy6523 643 DSVAPTDIEEGMRV 656 (713)
Q Consensus 643 ~sv~~~d~~~~~~~ 656 (713)
|||++.|=..|.++
T Consensus 771 pSv~~~dr~~Yd~l 784 (802)
T KOG0733|consen 771 PSVSERDRKKYDRL 784 (802)
T ss_pred CCccHHHHHHHHHH
Confidence 99999988777654
No 5
>KOG0734|consensus
Probab=100.00 E-value=3.6e-48 Score=409.05 Aligned_cols=266 Identities=30% Similarity=0.473 Sum_probs=236.4
Q ss_pred CCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeee
Q psy6523 94 GGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV 171 (713)
Q Consensus 94 ~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~ 171 (713)
-.++|+|+-|.++..+ ++|.+||++|..|.++|-.-|+||||.||||||||+||||+|+|.++|||..+++++-..|+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 3678999999998776 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEcc
Q psy6523 172 GERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISE 251 (713)
Q Consensus 172 Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~ 251 (713)
|.-. .||+..|..+...+||||||||++.+-..
T Consensus 379 GvGA----------------rRVRdLF~aAk~~APcIIFIDEiDavG~k------------------------------- 411 (752)
T KOG0734|consen 379 GVGA----------------RRVRDLFAAAKARAPCIIFIDEIDAVGGK------------------------------- 411 (752)
T ss_pred cccH----------------HHHHHHHHHHHhcCCeEEEEechhhhccc-------------------------------
Confidence 9854 79999999999999999999998651100
Q ss_pred ccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC
Q psy6523 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES 331 (713)
Q Consensus 252 ~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~ 331 (713)
+
T Consensus 412 ---------------------------------------------------------------------------R---- 412 (752)
T KOG0734|consen 412 ---------------------------------------------------------------------------R---- 412 (752)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHHHH
Q psy6523 332 GQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDIQA 411 (713)
Q Consensus 332 ~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (713)
T Consensus 413 -------------------------------------------------------------------------------- 412 (752)
T KOG0734|consen 413 -------------------------------------------------------------------------------- 412 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHHH
Q psy6523 412 VIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLR 491 (713)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 491 (713)
... .....+
T Consensus 413 ----------------------------------------------------------------------~~~-~~~y~k 421 (752)
T KOG0734|consen 413 ----------------------------------------------------------------------NPS-DQHYAK 421 (752)
T ss_pred ----------------------------------------------------------------------Ccc-HHHHHH
Confidence 000 112667
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
+.+||||.+|||+....+|+||+|||+|+.||+||.||||||++|.+|.||...|.+||+.|+++.+++.++|+..||+-
T Consensus 422 qTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARG 501 (752)
T KOG0734|consen 422 QTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARG 501 (752)
T ss_pred HHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCC-----chhhhhHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSEN-----PKYIINVKQFAK 636 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~ 636 (713)
|.|||||||+++++.||+.|...+...|++++++.|-+++..+....+..-.. ..||+..|.+..
T Consensus 502 T~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA 571 (752)
T KOG0734|consen 502 TPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA 571 (752)
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE
Confidence 99999999999999999999999999999999999999998887766543322 235666655543
No 6
>KOG0736|consensus
Probab=100.00 E-value=6.1e-48 Score=422.87 Aligned_cols=274 Identities=32% Similarity=0.546 Sum_probs=231.7
Q ss_pred cCCccccCCCCCcHHHHHHH----HHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 93 IGGARFDDGAGGDNEVQRTM----LELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 93 i~~~r~~d~iG~~~~~~~~i----~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
+|.++|+|++|.+ ++|..| .-.|+||++|.. |+++..|||||||||||||++|+|+|.|+.++|++|.+||+++
T Consensus 666 IPnV~WdDVGGLe-evK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 666 IPNVSWDDVGGLE-EVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCccchhcccCHH-HHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 7889999976654 455444 444788898877 8999999999999999999999999999999999999999999
Q ss_pred eeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEE
Q psy6523 169 KYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVV 248 (713)
Q Consensus 169 ~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ 248 (713)
+|+|||| ..++..|..+.+..||++|+||.|+.-..
T Consensus 744 MYVGqSE----------------~NVR~VFerAR~A~PCVIFFDELDSlAP~---------------------------- 779 (953)
T KOG0736|consen 744 MYVGQSE----------------ENVREVFERARSAAPCVIFFDELDSLAPN---------------------------- 779 (953)
T ss_pred HHhcchH----------------HHHHHHHHHhhccCCeEEEeccccccCcc----------------------------
Confidence 9999998 78999999999999999999998661100
Q ss_pred EccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 249 ISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 249 ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
+ |+
T Consensus 780 --------------------------------R--------------------------------------------G~- 782 (953)
T KOG0736|consen 780 --------------------------------R--------------------------------------------GR- 782 (953)
T ss_pred --------------------------------C--------------------------------------------CC-
Confidence 0 00
Q ss_pred cCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHH
Q psy6523 329 EESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDD 408 (713)
Q Consensus 329 ~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~ 408 (713)
T Consensus 783 -------------------------------------------------------------------------------- 782 (953)
T KOG0736|consen 783 -------------------------------------------------------------------------------- 782 (953)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHH
Q psy6523 409 IQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIE 488 (713)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~ 488 (713)
-.|+||.
T Consensus 783 --------------------------------------------------------------------sGDSGGV----- 789 (953)
T KOG0736|consen 783 --------------------------------------------------------------------SGDSGGV----- 789 (953)
T ss_pred --------------------------------------------------------------------CCCcccc-----
Confidence 0133443
Q ss_pred HHHHHHHhhhhcccCCC--CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCC-CHHHHHHHHHHhhccCCCcccccH
Q psy6523 489 KLREVVETPLLHLDGFD--PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLP-DLEGRTHIFKIHARSMSVERDIRF 565 (713)
Q Consensus 489 ~~~~~v~~lL~~~d~~~--~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P-~~~~R~~il~~~~~~~~~~~~~~~ 565 (713)
|.|+|+|||.+|||+. +...|+|||||||||.|||||+||||||+.+|++++ |.+.+..||+...+++.++.++|+
T Consensus 790 -MDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL 868 (953)
T KOG0736|consen 790 -MDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL 868 (953)
T ss_pred -HHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH
Confidence 3599999999999997 577899999999999999999999999999999999 779999999999999999999999
Q ss_pred HHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCC
Q psy6523 566 ELLARLCP-NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADS 644 (713)
Q Consensus 566 ~~la~~t~-g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 644 (713)
.++|++++ .|||||+.+||.+|.+.|++|....+...++ .....+.....+++.||.+++.+..||
T Consensus 869 ~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~-------------~~~e~~~~~v~V~~eDflks~~~l~PS 935 (953)
T KOG0736|consen 869 VEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTI-------------SEEEQESSSVRVTMEDFLKSAKRLQPS 935 (953)
T ss_pred HHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccc-------------cccccCCceEEEEHHHHHHHHHhcCCc
Confidence 99999998 8999999999999999999885443221111 112334455778999999999999999
Q ss_pred CCcccccccccc
Q psy6523 645 VAPTDIEEGMRV 656 (713)
Q Consensus 645 v~~~d~~~~~~~ 656 (713)
++.+++..|..+
T Consensus 936 vS~~EL~~ye~v 947 (953)
T KOG0736|consen 936 VSEQELLRYEMV 947 (953)
T ss_pred ccHHHHHHHHHH
Confidence 999999998764
No 7
>KOG0738|consensus
Probab=100.00 E-value=4.7e-47 Score=388.71 Aligned_cols=277 Identities=30% Similarity=0.440 Sum_probs=237.0
Q ss_pred hhhhcCCccccCCCCCcHHH---HHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 89 MIDAIGGARFDDGAGGDNEV---QRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 89 lid~i~~~r~~d~iG~~~~~---~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
++..-+.++|+|+.|..+.+ ++.+...+..|+.|+.+ .+|.||||++|||||||||||+|+|.|++..||.|+.+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 46777889999999988753 36677778899999874 589999999999999999999999999999999999999
Q ss_pred ceeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCce
Q psy6523 166 LVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDL 245 (713)
Q Consensus 166 i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~ 245 (713)
++|||.|||| .=|+=.|+-+.-.+|++|||||++.+. +
T Consensus 281 ltSKwRGeSE----------------KlvRlLFemARfyAPStIFiDEIDslc-s------------------------- 318 (491)
T KOG0738|consen 281 LTSKWRGESE----------------KLVRLLFEMARFYAPSTIFIDEIDSLC-S------------------------- 318 (491)
T ss_pred hhhhhccchH----------------HHHHHHHHHHHHhCCceeehhhHHHHH-h-------------------------
Confidence 9999999997 234455777888889999998885511 0
Q ss_pred EEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEee
Q psy6523 246 IVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGW 325 (713)
Q Consensus 246 vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~Gw 325 (713)
T Consensus 319 -------------------------------------------------------------------------------- 318 (491)
T KOG0738|consen 319 -------------------------------------------------------------------------------- 318 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhH
Q psy6523 326 GRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAV 405 (713)
Q Consensus 326 G~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~ 405 (713)
T Consensus 319 -------------------------------------------------------------------------------- 318 (491)
T KOG0738|consen 319 -------------------------------------------------------------------------------- 318 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHH
Q psy6523 406 EDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKE 485 (713)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~ 485 (713)
..|+ +.
T Consensus 319 -------------------------------------------------------------------------~RG~-s~ 324 (491)
T KOG0738|consen 319 -------------------------------------------------------------------------QRGG-SS 324 (491)
T ss_pred -------------------------------------------------------------------------cCCC-cc
Confidence 0111 23
Q ss_pred HHHHHHHHHHhhhhcccCCCCC----CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcc
Q psy6523 486 QIEKLREVVETPLLHLDGFDPR----GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVER 561 (713)
Q Consensus 486 ~~~~~~~~v~~lL~~~d~~~~~----~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~ 561 (713)
+|+..||+.+.||.+|||+... +.|+|+||||.||+||.||+| ||+++||||+||.++|..+|+..++...+++
T Consensus 325 EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~ 402 (491)
T KOG0738|consen 325 EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDD 402 (491)
T ss_pred chhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCC
Confidence 6888899999999999999532 339999999999999999999 9999999999999999999999999999999
Q ss_pred cccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhc
Q psy6523 562 DIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDL 641 (713)
Q Consensus 562 ~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 641 (713)
+++++.||++++||||+||.++|++|+|+++||....++.+.+..... +....++...||++++..+
T Consensus 403 ~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lak-------------E~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 403 PVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAK-------------EEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred CccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhh-------------hccccccchhhHHHHHHHc
Confidence 999999999999999999999999999999999887777666554322 2233678999999999999
Q ss_pred CCCCCccccccccccc
Q psy6523 642 ADSVAPTDIEEGMRVG 657 (713)
Q Consensus 642 ~~sv~~~d~~~~~~~~ 657 (713)
++|+++.++..+..+.
T Consensus 470 ~pSvs~~d~~k~ekW~ 485 (491)
T KOG0738|consen 470 RPSVSAADLEKYEKWM 485 (491)
T ss_pred CcCCCHHHHHHHHHHH
Confidence 9999999999887754
No 8
>KOG0731|consensus
Probab=100.00 E-value=1.1e-45 Score=414.61 Aligned_cols=287 Identities=33% Similarity=0.579 Sum_probs=245.5
Q ss_pred cCCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeee
Q psy6523 93 IGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 170 (713)
Q Consensus 93 i~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~ 170 (713)
-.++.|.|+.|.++..+ .++..||+||+.|.++|+..|||+||+||||||||+||+|+|+|.|+||+.++++|++..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34589999999888665 5778889999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEc
Q psy6523 171 VGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250 (713)
Q Consensus 171 ~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig 250 (713)
.|... .||+..|..+..++|+++|+||++.+--
T Consensus 385 ~g~~a----------------srvr~lf~~ar~~aP~iifideida~~~------------------------------- 417 (774)
T KOG0731|consen 385 VGVGA----------------SRVRDLFPLARKNAPSIIFIDEIDAVGR------------------------------- 417 (774)
T ss_pred cccch----------------HHHHHHHHHhhccCCeEEEecccccccc-------------------------------
Confidence 98732 6899999999999999999999865100
Q ss_pred cccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccC
Q psy6523 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE 330 (713)
Q Consensus 251 ~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~ 330 (713)
T Consensus 418 -------------------------------------------------------------------------------- 417 (774)
T KOG0731|consen 418 -------------------------------------------------------------------------------- 417 (774)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHHH
Q psy6523 331 SGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDIQ 410 (713)
Q Consensus 331 ~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 410 (713)
.|.|.+
T Consensus 418 ------------------------------------------------------------~r~G~~-------------- 423 (774)
T KOG0731|consen 418 ------------------------------------------------------------KRGGKG-------------- 423 (774)
T ss_pred ------------------------------------------------------------cccccc--------------
Confidence 000000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHH
Q psy6523 411 AVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKL 490 (713)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~ 490 (713)
.+|. .++-
T Consensus 424 ---------------------------------------------------------------------~~~~---~~e~ 431 (774)
T KOG0731|consen 424 ---------------------------------------------------------------------TGGG---QDER 431 (774)
T ss_pred ---------------------------------------------------------------------cCCC---ChHH
Confidence 0000 0122
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLA 569 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la 569 (713)
...+||||.+|||+...++|+|+++|||||.||+||+||||||++|++++||...|.+||+.|+++.+++ +++|+..||
T Consensus 432 e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 432 EQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 3679999999999999999999999999999999999999999999999999999999999999999996 899999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccC-----CCCchhhhhHHHHHHHHhhcCCC
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINAD-----SENPKYIINVKQFAKFVVDLADS 644 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~s 644 (713)
.+|+|||||||+++|++|++.|+|+....|+.+||+.|++++..+....+.. .....++...|+...++.+..+.
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dp 591 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADP 591 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCc
Confidence 9999999999999999999999999999999999999999888775543322 22345788888888877788777
Q ss_pred CCcccccc
Q psy6523 645 VAPTDIEE 652 (713)
Q Consensus 645 v~~~d~~~ 652 (713)
+.+-+|.+
T Consensus 592 l~kvsIiP 599 (774)
T KOG0731|consen 592 LLKVSIIP 599 (774)
T ss_pred ceeEEecc
Confidence 77777765
No 9
>KOG0727|consensus
Probab=100.00 E-value=2.8e-44 Score=348.70 Aligned_cols=125 Identities=43% Similarity=0.728 Sum_probs=120.0
Q ss_pred HHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHH
Q psy6523 489 KLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELL 568 (713)
Q Consensus 489 ~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 568 (713)
+..|++-.||++|||++...+|-||+||||.|.|||||+||||+|++|+||+||..+++-+|.....++.+.+++|++.+
T Consensus 274 evqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~ 353 (408)
T KOG0727|consen 274 EVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDL 353 (408)
T ss_pred HHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
..+-+..|||||.++|++|.|.|+|+++..+..+||++|...+..
T Consensus 354 v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 354 VARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred hcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999987643
No 10
>KOG0729|consensus
Probab=100.00 E-value=2.9e-44 Score=351.02 Aligned_cols=133 Identities=81% Similarity=1.226 Sum_probs=125.8
Q ss_pred HHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHH
Q psy6523 489 KLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELL 568 (713)
Q Consensus 489 ~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 568 (713)
+.+|..-.++++|||+++++++-|++|||||+.|||||+||||+|++++|.+||.+.|..||+.|.+.+.+..|+-++-|
T Consensus 296 evqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ell 375 (435)
T KOG0729|consen 296 EVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELL 375 (435)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHH
Confidence 44577778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccC
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINAD 621 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~ 621 (713)
|+.|..-|||||+.+|.+|.|.|+|..++..+.+||.+|++++..+..+.+..
T Consensus 376 arlcpnstgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~kfsat 428 (435)
T KOG0729|consen 376 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYAKFSAT 428 (435)
T ss_pred HhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999998887766543
No 11
>KOG0728|consensus
Probab=100.00 E-value=2e-43 Score=342.37 Aligned_cols=251 Identities=43% Similarity=0.698 Sum_probs=213.2
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++.+|..+++-++|.+..++ +.|.-..+||+.|..+||..|+|+|||||||||||+||+|+|..+.+.|+.|+++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 56777777777777776554 333444799999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+.+|+||.. .-++..|--+...+|+++|.||+++
T Consensus 218 vqk~igegs----------------rmvrelfvmarehapsiifmdeids------------------------------ 251 (404)
T KOG0728|consen 218 VQKYIGEGS----------------RMVRELFVMAREHAPSIIFMDEIDS------------------------------ 251 (404)
T ss_pred HHHHhhhhH----------------HHHHHHHHHHHhcCCceEeeecccc------------------------------
Confidence 999999942 2244556666667777777776644
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 252 -------------------------------------------------------------------------------- 251 (404)
T KOG0728|consen 252 -------------------------------------------------------------------------------- 251 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
T Consensus 252 -------------------------------------------------------------------------------- 251 (404)
T KOG0728|consen 252 -------------------------------------------------------------------------------- 251 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
.+.+..+.++. -
T Consensus 252 ------------------------------------------------------------------igs~r~e~~~g--g 263 (404)
T KOG0728|consen 252 ------------------------------------------------------------------IGSSRVESGSG--G 263 (404)
T ss_pred ------------------------------------------------------------------cccccccCCCC--c
Confidence 22222111111 1
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
..+.+|..-.||+++||++..+++-||+||||.|.|||||+||||+|++|+||.|++++|.+||+.+.+++.+...+++.
T Consensus 264 dsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~ 343 (404)
T KOG0728|consen 264 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLR 343 (404)
T ss_pred cHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHH
Confidence 13456788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
.+|+...|.|||+++.+|.+|.|.|+|+.+-.++++||+-|..++...
T Consensus 344 kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 344 KIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999887554
No 12
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-43 Score=387.80 Aligned_cols=284 Identities=32% Similarity=0.570 Sum_probs=248.7
Q ss_pred CCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeee
Q psy6523 94 GGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV 171 (713)
Q Consensus 94 ~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~ 171 (713)
..++|.|+.|.++... ..+.++|++|..|..+|..-|+||||+||||||||+||+|+|+|+++||+.+++++++..|+
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 4589999999887665 58889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEcc
Q psy6523 172 GERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISE 251 (713)
Q Consensus 172 Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~ 251 (713)
|--. .|++..|..+..++|||+||||++..-
T Consensus 225 GvGA----------------sRVRdLF~qAkk~aP~IIFIDEiDAvG--------------------------------- 255 (596)
T COG0465 225 GVGA----------------SRVRDLFEQAKKNAPCIIFIDEIDAVG--------------------------------- 255 (596)
T ss_pred CCCc----------------HHHHHHHHHhhccCCCeEEEehhhhcc---------------------------------
Confidence 9643 789999999999999999999986510
Q ss_pred ccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC
Q psy6523 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES 331 (713)
Q Consensus 252 ~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~ 331 (713)
+.
T Consensus 256 ---------------------------------------------------------------------------r~--- 257 (596)
T COG0465 256 ---------------------------------------------------------------------------RQ--- 257 (596)
T ss_pred ---------------------------------------------------------------------------cc---
Confidence 00
Q ss_pred CCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHHHH
Q psy6523 332 GQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDIQA 411 (713)
Q Consensus 332 ~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (713)
.|.+
T Consensus 258 -------------------------------------------------------------Rg~g--------------- 261 (596)
T COG0465 258 -------------------------------------------------------------RGAG--------------- 261 (596)
T ss_pred -------------------------------------------------------------cCCC---------------
Confidence 0000
Q ss_pred HHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHHH
Q psy6523 412 VIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLR 491 (713)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 491 (713)
.||. +.+..
T Consensus 262 --------------------------------------------------------------------~Ggg---nderE 270 (596)
T COG0465 262 --------------------------------------------------------------------LGGG---NDERE 270 (596)
T ss_pred --------------------------------------------------------------------CCCC---chHHH
Confidence 1111 12334
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
+.+||+|.+|||+.....|+||++|||||-+||||+||||||+.|.+++||...|++|++.|+++.+++.++|+..+|+.
T Consensus 271 QTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~ 350 (596)
T COG0465 271 QTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARG 350 (596)
T ss_pred HHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhh
Confidence 78999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccccccc-----CCCCchhhhhHHHHHHHHhhcCCCCC
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINA-----DSENPKYIINVKQFAKFVVDLADSVA 646 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~sv~ 646 (713)
|.||||||+++++++|++.|.|++...+++.||.+|.+++..+....+. ......||+..|.+...+......|.
T Consensus 351 tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~ 430 (596)
T COG0465 351 TPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVH 430 (596)
T ss_pred CCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccc
Confidence 9999999999999999999999999999999999999999988777664 22334589999999998888877776
Q ss_pred ccccc
Q psy6523 647 PTDIE 651 (713)
Q Consensus 647 ~~d~~ 651 (713)
+..+-
T Consensus 431 KvtIi 435 (596)
T COG0465 431 KVTII 435 (596)
T ss_pred eeeec
Confidence 66553
No 13
>KOG0726|consensus
Probab=100.00 E-value=1.6e-43 Score=349.81 Aligned_cols=251 Identities=41% Similarity=0.710 Sum_probs=216.7
Q ss_pred hhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 91 DAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
+.-+.-++.|++|.+..++ +.+.-.|.||+.|..+|+.||+||+|||+||||||+||+|+||.+.+.|+.|-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 4445557888777766443 4555558999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEE
Q psy6523 168 QKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247 (713)
Q Consensus 168 s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv 247 (713)
.+|.|+-. .=+++.|+.+...+|+|+|+||++.+-.
T Consensus 257 QkylGdGp----------------klvRqlF~vA~e~apSIvFiDEIdAiGt---------------------------- 292 (440)
T KOG0726|consen 257 QKYLGDGP----------------KLVRELFRVAEEHAPSIVFIDEIDAIGT---------------------------- 292 (440)
T ss_pred HHHhccch----------------HHHHHHHHHHHhcCCceEEeehhhhhcc----------------------------
Confidence 99999854 3466778889999999999999865210
Q ss_pred EEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 248 ~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
-+|+.
T Consensus 293 --------------------------KRyds------------------------------------------------- 297 (440)
T KOG0726|consen 293 --------------------------KRYDS------------------------------------------------- 297 (440)
T ss_pred --------------------------ccccC-------------------------------------------------
Confidence 01111
Q ss_pred ccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHH
Q psy6523 328 VEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVED 407 (713)
Q Consensus 328 ~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~ 407 (713)
T Consensus 298 -------------------------------------------------------------------------------- 297 (440)
T KOG0726|consen 298 -------------------------------------------------------------------------------- 297 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHH
Q psy6523 408 DIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQI 487 (713)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~ 487 (713)
.+|| .
T Consensus 298 -----------------------------------------------------------------------~Sgg----e 302 (440)
T KOG0726|consen 298 -----------------------------------------------------------------------NSGG----E 302 (440)
T ss_pred -----------------------------------------------------------------------CCcc----H
Confidence 0111 1
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHH
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFEL 567 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 567 (713)
.+++|..-.||+++|||++++.|-||+|||+.+.|||||+||||+|++|+|++||+..++.||..|..++.+..+++++.
T Consensus 303 rEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~ 382 (440)
T KOG0726|consen 303 REIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEE 382 (440)
T ss_pred HHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHH
Confidence 34457777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCT 615 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~ 615 (713)
+.-.-+-+|||||+++|.+|.+.|+|+.+..++++||..|.+++....
T Consensus 383 li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 383 LIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred HhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 998889999999999999999999999999999999999999886554
No 14
>KOG0652|consensus
Probab=100.00 E-value=4.1e-43 Score=341.99 Aligned_cols=250 Identities=38% Similarity=0.683 Sum_probs=216.0
Q ss_pred hhhcCCccccCCCCCcHHHHH---HHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQR---TMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~---~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
+|.-|+-.++|++|.+..+++ .+.-.+.|++.|..+||.||+|+|+|||||||||++|||.|..++..|+++.+|.+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 466667788898888876664 33444689999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+..|+|+.. .=++..|.-+...+|+++||||.+.+-..
T Consensus 242 VQMfIGdGA----------------kLVRDAFaLAKEkaP~IIFIDElDAIGtK-------------------------- 279 (424)
T KOG0652|consen 242 VQMFIGDGA----------------KLVRDAFALAKEKAPTIIFIDELDAIGTK-------------------------- 279 (424)
T ss_pred HhhhhcchH----------------HHHHHHHHHhhccCCeEEEEechhhhccc--------------------------
Confidence 999999853 34677888899999999999987551100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
+|+.
T Consensus 280 ----------------------------RfDS------------------------------------------------ 283 (424)
T KOG0652|consen 280 ----------------------------RFDS------------------------------------------------ 283 (424)
T ss_pred ----------------------------cccc------------------------------------------------
Confidence 0000
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
T Consensus 284 -------------------------------------------------------------------------------- 283 (424)
T KOG0652|consen 284 -------------------------------------------------------------------------------- 283 (424)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
+..|
T Consensus 284 ------------------------------------------------------------------------ek~G---- 287 (424)
T KOG0652|consen 284 ------------------------------------------------------------------------EKAG---- 287 (424)
T ss_pred ------------------------------------------------------------------------cccc----
Confidence 0000
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
..+..|..-.||+++||+++..+|-||+||||.|.|||||+|+||+|++|+||.|+++.|..|++.+.+++.+.+|++++
T Consensus 288 DREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfe 367 (424)
T KOG0652|consen 288 DREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFE 367 (424)
T ss_pred cHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHH
Confidence 12345777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
+||+-|++|.||+.+++|.+|.|.|+|+....++.+||.+++..+..
T Consensus 368 ELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 368 ELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred HHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987644
No 15
>KOG0739|consensus
Probab=100.00 E-value=2.1e-42 Score=342.87 Aligned_cols=283 Identities=25% Similarity=0.427 Sum_probs=229.2
Q ss_pred hhhcCCccccCCCCCcH---HHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDN---EVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~---~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
+.--|.++|+|+.|++. .+++.++-.++.|..|.. +-.|.+||||||||||||+.||+|+|.|.+-.||+|+.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 34457899999999875 456777777899999877 45789999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+|||.|||+ .=+.+.|+-+..+.|+|+|+||++. +||.
T Consensus 203 vSKWmGESE----------------kLVknLFemARe~kPSIIFiDEiDs-lcg~------------------------- 240 (439)
T KOG0739|consen 203 VSKWMGESE----------------KLVKNLFEMARENKPSIIFIDEIDS-LCGS------------------------- 240 (439)
T ss_pred HHHHhccHH----------------HHHHHHHHHHHhcCCcEEEeehhhh-hccC-------------------------
Confidence 999999997 4466788899999999999999873 4430
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 241 -------------------------------------------------------------------------------- 240 (439)
T KOG0739|consen 241 -------------------------------------------------------------------------------- 240 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
T Consensus 241 -------------------------------------------------------------------------------- 240 (439)
T KOG0739|consen 241 -------------------------------------------------------------------------------- 240 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
+.+.+
T Consensus 241 ---------------------------------------------------------------------------r~enE 245 (439)
T KOG0739|consen 241 ---------------------------------------------------------------------------RSENE 245 (439)
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 00013
Q ss_pred HHHHHHHHHhhhhcccCCCC-CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-cccc
Q psy6523 487 IEKLREVVETPLLHLDGFDP-RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIR 564 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~-~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~ 564 (713)
.+..||+...||.+|.|+.. .++|+|++|||-||.||.|++| ||+++||||+|+..+|..+|+.++.+.++. .+.|
T Consensus 246 seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d 323 (439)
T KOG0739|consen 246 SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQD 323 (439)
T ss_pred hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhh
Confidence 34567999999999999954 5679999999999999999999 999999999999999999999999999876 7789
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhH---------hhhccc-ccc---------cCCCCc
Q psy6523 565 FELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNK---------VARCTK-IIN---------ADSENP 625 (713)
Q Consensus 565 ~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~---------~~~~~~-~~~---------~~~~~~ 625 (713)
+.+|+++|+||||+||.-+++.|.|.++|... +..+|...... ..++.. +.. ...+..
T Consensus 324 ~~eL~~kTeGySGsDisivVrDalmePvRkvq---sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~ 400 (439)
T KOG0739|consen 324 FKELARKTEGYSGSDISIVVRDALMEPVRKVQ---SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLL 400 (439)
T ss_pred HHHHHhhcCCCCcCceEEEehhhhhhhHHHhh---hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhcc
Confidence 99999999999999999999999999998743 22333322210 011100 000 111234
Q ss_pred hhhhhHHHHHHHHhhcCCCCCccccccccc
Q psy6523 626 KYIINVKQFAKFVVDLADSVAPTDIEEGMR 655 (713)
Q Consensus 626 ~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~ 655 (713)
++++++.||.+++...+|.|...|+..-.+
T Consensus 401 eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~ 430 (439)
T KOG0739|consen 401 EPPVTMRDFLKSLSRTKPTVNEDDLLKHEK 430 (439)
T ss_pred CCCccHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 578999999999999999999999876543
No 16
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.6e-41 Score=398.72 Aligned_cols=480 Identities=27% Similarity=0.434 Sum_probs=314.5
Q ss_pred hcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 92 AIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 92 ~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
..+.++|+|++|.++.++ +.+...+.+|+.|..+|+.+|+|+|||||||||||++|+++|++++.+|+.|+++++.+
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 346788999877766544 33444478999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeee----eechhhHHhhcccccCCCCCCc
Q psy6523 169 KYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGT----LISDRYVLTAAHCVRSSKRQKD 244 (713)
Q Consensus 169 ~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggs----lI~~r~vltaa~c~~~~~~~~~ 244 (713)
+|.|+++ .++...|..+....|+++++||++.+...+. -+..+.+-+-..++... .+..
T Consensus 251 ~~~g~~~----------------~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l-~~~~ 313 (733)
T TIGR01243 251 KYYGESE----------------ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-KGRG 313 (733)
T ss_pred ccccHHH----------------HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc-ccCC
Confidence 9999865 4677777778888999999999887654321 12334443333444333 3345
Q ss_pred eEEEEccccCCcccccceEEE-EeeE--EeeCCCCCc---------CCCC-CCccceEEE-ecCC---------------
Q psy6523 245 LIVVISEHNRATVYETQIETR-RVVK--VLTHPKYNA---------QGAK-SHDHDIALL-KLDT--------------- 295 (713)
Q Consensus 245 ~vv~ig~~~~~~~~d~~~~~~-~v~~--ii~h~~~~~---------~~~~-~~~~diall-~L~~--------------- 295 (713)
.+++|+++|++..+|+.+.+. +..+ .+..|+... .+.. ..+.++.-+ +...
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 678899999998888776531 1222 222332210 0000 000000000 0000
Q ss_pred -----------CCC--------------------CCCCcccccCCCC-CCccCCCceEEEeeccccCCCCcchhcccc-c
Q psy6523 296 -----------PLE--------------------FKPTVSPVCLPQL-GEKFTQRTGTVVGWGRVEESGQIASDLRAT-Q 342 (713)
Q Consensus 296 -----------p~~--------------------~~~~i~~icl~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~-~ 342 (713)
..+ +..+++.+- |+. .+.+.. ..-..|.+..........|++. .
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~-ps~~~~~~~~--~~~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVE-PSAIREVLVE--VPNVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcc-ccccchhhcc--ccccchhhcccHHHHHHHHHHHHH
Confidence 000 000000000 000 000000 0113444444433444444332 2
Q ss_pred ccccChhhhhcCCCccccccCcccccCCCCCCCCCccccc------cHhhHHHHHHhcCCccchhhhhHHHHHHHHHHHh
Q psy6523 343 VPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTL------DEADIALLKSYGQGQYTKSIKAVEDDIQAVIKRV 416 (713)
Q Consensus 343 ~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l------~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (713)
+|+........+ + .....|.+.+|+++|.++. .+....++.-.++..+.+++++.+..++.++..+
T Consensus 471 ~~~~~~~~~~~~-g-------~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A 542 (733)
T TIGR01243 471 WPLKHPEIFEKM-G-------IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 542 (733)
T ss_pred hhhhCHHHHHhc-C-------CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH
Confidence 233222222221 1 1112355667788888754 2333344444555566667777778888887765
Q ss_pred hhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHHHHHHHh
Q psy6523 417 NELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVET 496 (713)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~v~~ 496 (713)
.. ..|++++++.++..... .|+. ......++++++
T Consensus 543 ~~-----------------------------------------~~p~iifiDEid~l~~~---r~~~-~~~~~~~~~~~~ 577 (733)
T TIGR01243 543 RQ-----------------------------------------AAPAIIFFDEIDAIAPA---RGAR-FDTSVTDRIVNQ 577 (733)
T ss_pred Hh-----------------------------------------cCCEEEEEEChhhhhcc---CCCC-CCccHHHHHHHH
Confidence 52 34566666555543322 2211 112345799999
Q ss_pred hhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCC
Q psy6523 497 PLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNST 576 (713)
Q Consensus 497 lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~s 576 (713)
||++|||+...++|+||+|||+|+.||||++||||||+.|+|++||.++|.+||+.++++.++..++|++.||+.|+|||
T Consensus 578 lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 578 LLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred HHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccccccccc
Q psy6523 577 GAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRV 656 (713)
Q Consensus 577 gadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~ 656 (713)
||||.++|++|++.|+++.......+++.... ........++.+||.+++..++|+++++++..+..+
T Consensus 658 gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~ 725 (733)
T TIGR01243 658 GADIEAVCREAAMAALRESIGSPAKEKLEVGE------------EEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERL 725 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhccc------------ccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999998764433222221100 001123578999999999999999999998887653
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.3e-41 Score=326.17 Aligned_cols=239 Identities=31% Similarity=0.501 Sum_probs=210.7
Q ss_pred hhcCCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 91 DAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
..+...+++|++|..+..+ +.|.++|.+|+.|..| .|++||+|||||||||++|+|+|+|+.+||+.|.+.++++
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3456679999999988755 7999999999999875 4999999999999999999999999999999999999999
Q ss_pred eeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEE
Q psy6523 169 KYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVV 248 (713)
Q Consensus 169 ~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ 248 (713)
.|+|+.. .+|+..+..+...+||++|+||.+.+
T Consensus 190 ehVGdga----------------r~Ihely~rA~~~aPcivFiDE~DAi------------------------------- 222 (368)
T COG1223 190 EHVGDGA----------------RRIHELYERARKAAPCIVFIDELDAI------------------------------- 222 (368)
T ss_pred HHhhhHH----------------HHHHHHHHHHHhcCCeEEEehhhhhh-------------------------------
Confidence 9999854 68998899999999999999987541
Q ss_pred EccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 249 ISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 249 ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
T Consensus 223 -------------------------------------------------------------------------------- 222 (368)
T COG1223 223 -------------------------------------------------------------------------------- 222 (368)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHH
Q psy6523 329 EESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDD 408 (713)
Q Consensus 329 ~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~ 408 (713)
.+.|.
T Consensus 223 ------------------------------------------------------------aLdRr--------------- 227 (368)
T COG1223 223 ------------------------------------------------------------ALDRR--------------- 227 (368)
T ss_pred ------------------------------------------------------------hhhhh---------------
Confidence 00000
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHH
Q psy6523 409 IQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIE 488 (713)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~ 488 (713)
-. +...
T Consensus 228 -------yQ-------------------------------------------------------------------elRG 233 (368)
T COG1223 228 -------YQ-------------------------------------------------------------------ELRG 233 (368)
T ss_pred -------HH-------------------------------------------------------------------Hhcc
Confidence 00 0001
Q ss_pred HHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHH
Q psy6523 489 KLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELL 568 (713)
Q Consensus 489 ~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~l 568 (713)
...++||.||++|||+....+|+.|+|||+|+.||||++. ||+.+|+|.+|+.++|.+|++.+.+++++.-+.+++.+
T Consensus 234 DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~ 311 (368)
T COG1223 234 DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYL 311 (368)
T ss_pred cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHH
Confidence 1238999999999999999999999999999999999999 99999999999999999999999999999989999999
Q ss_pred HHhCCCCCHHHHHH-HHHHHHHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 569 ARLCPNSTGAEIRS-VCTEAGMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 569 a~~t~g~sgadi~~-l~~~A~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
+.+|.||||.||+. +++.|.+.|+.+++..|+.+|++.|+++
T Consensus 312 ~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 312 AAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 99999999999987 7889999999999999999999999986
No 18
>KOG0735|consensus
Probab=100.00 E-value=4.1e-40 Score=358.12 Aligned_cols=226 Identities=33% Similarity=0.520 Sum_probs=197.1
Q ss_pred CCccccCCCCCcHHHHHHHHHH----HhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceee
Q psy6523 94 GGARFDDGAGGDNEVQRTMLEL----INQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 169 (713)
Q Consensus 94 ~~~r~~d~iG~~~~~~~~i~~~----l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~ 169 (713)
.+.+|+|++|..+ ++..+.+. -+.|..|...+++-+.|||||||||||||+||-|+|...+..||.|.+||+++|
T Consensus 662 tgi~w~digg~~~-~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 662 TGIRWEDIGGLFE-AKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred CCCCceecccHHH-HHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 3478888766554 44444444 567788889999999999999999999999999999999999999999999999
Q ss_pred eecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEE
Q psy6523 170 YVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249 (713)
Q Consensus 170 ~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~i 249 (713)
|+|.|| +.++..|..+....||++|+||.+++-..
T Consensus 741 yIGaSE----------------q~vR~lF~rA~~a~PCiLFFDEfdSiAPk----------------------------- 775 (952)
T KOG0735|consen 741 YIGASE----------------QNVRDLFERAQSAKPCILFFDEFDSIAPK----------------------------- 775 (952)
T ss_pred HhcccH----------------HHHHHHHHHhhccCCeEEEeccccccCcc-----------------------------
Confidence 999988 78999999999999999999998651100
Q ss_pred ccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 250 g~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
T Consensus 776 -------------------------------------------------------------------------------- 775 (952)
T KOG0735|consen 776 -------------------------------------------------------------------------------- 775 (952)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHH
Q psy6523 330 ESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDI 409 (713)
Q Consensus 330 ~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~ 409 (713)
.|+
T Consensus 776 ---------------------------------------------------------------RGh-------------- 778 (952)
T KOG0735|consen 776 ---------------------------------------------------------------RGH-------------- 778 (952)
T ss_pred ---------------------------------------------------------------cCC--------------
Confidence 000
Q ss_pred HHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHH
Q psy6523 410 QAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEK 489 (713)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~ 489 (713)
+..|.
T Consensus 779 --------------------------------------------------------------------DsTGV------- 783 (952)
T KOG0735|consen 779 --------------------------------------------------------------------DSTGV------- 783 (952)
T ss_pred --------------------------------------------------------------------CCCCc-------
Confidence 00111
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
..|+|||||++|||.++.++|+|+|||.|||.|||||+||||||+.++.++|++.+|.+||+.+..++..+.++|++.+|
T Consensus 784 TDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 784 TDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred hHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 13999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRK 597 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~ 597 (713)
.+|+|||||||..|+..|.+.|+++.-.
T Consensus 864 ~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 864 QKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543
No 19
>KOG0737|consensus
Probab=100.00 E-value=1e-39 Score=335.67 Aligned_cols=156 Identities=26% Similarity=0.391 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCC--eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccc
Q psy6523 486 QIEKLREVVETPLLHLDGFDPRGN--IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDI 563 (713)
Q Consensus 486 ~~~~~~~~v~~lL~~~d~~~~~~~--v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~ 563 (713)
+|+.++.+.++|....||+.+.++ |+|+||||||.+||.|++| |+.+.++|++|+..+|++||+.++++-++++++
T Consensus 206 dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~v 283 (386)
T KOG0737|consen 206 DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDV 283 (386)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCccc
Confidence 678888999999999999976655 9999999999999999999 999999999999999999999999999999999
Q ss_pred cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhh-cCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcC
Q psy6523 564 RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV-ASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLA 642 (713)
Q Consensus 564 ~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~-v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 642 (713)
|+..+|.+|+||||+||.++|+.|++.++|+.... ....|...++....+.... ......+++++.||.++...+.
T Consensus 284 D~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~---~~~~~~r~l~~eDf~~a~~~v~ 360 (386)
T KOG0737|consen 284 DLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAA---ASSCLLRPLEQEDFPKAINRVS 360 (386)
T ss_pred CHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCccc---ccccccCcccHHHHHHHHHhhh
Confidence 99999999999999999999999999999986443 3334444444433222111 2233457888888888888776
Q ss_pred CCCC
Q psy6523 643 DSVA 646 (713)
Q Consensus 643 ~sv~ 646 (713)
++++
T Consensus 361 ~~~~ 364 (386)
T KOG0737|consen 361 ASVA 364 (386)
T ss_pred hHHH
Confidence 6643
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=354.18 Aligned_cols=125 Identities=42% Similarity=0.682 Sum_probs=119.5
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
..+++.+||++||++....+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.++.++++..++++..+|
T Consensus 265 ~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la 344 (398)
T PTZ00454 265 VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFV 344 (398)
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHH
Confidence 45889999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
..|+|||||||+++|++|++.|+++++..++.+||..|++++...
T Consensus 345 ~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 345 SRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987554
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=359.81 Aligned_cols=246 Identities=39% Similarity=0.619 Sum_probs=213.0
Q ss_pred hcCCccccCCCCCcHH---HHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 92 AIGGARFDDGAGGDNE---VQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 92 ~i~~~r~~d~iG~~~~---~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
..+.++|.|++|.... +++.+..++.+|+.|..+|+++|+|+|||||||||||++|+|+|++++.+|+.|..+++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 4556788888775543 3356666688999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEE
Q psy6523 169 KYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVV 248 (713)
Q Consensus 169 ~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ 248 (713)
+|+||++ .+|...|..+...+|+++|+||.+++..+.+
T Consensus 315 k~vGese----------------k~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~-------------------------- 352 (494)
T COG0464 315 KWVGESE----------------KNIRELFEKARKLAPSIIFIDEIDSLASGRG-------------------------- 352 (494)
T ss_pred cccchHH----------------HHHHHHHHHHHcCCCcEEEEEchhhhhccCC--------------------------
Confidence 9999998 7899999999999999999999866221000
Q ss_pred EccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 249 ISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 249 ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
T Consensus 353 -------------------------------------------------------------------------------- 352 (494)
T COG0464 353 -------------------------------------------------------------------------------- 352 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHH
Q psy6523 329 EESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDD 408 (713)
Q Consensus 329 ~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~ 408 (713)
.
T Consensus 353 -----------------------------------------------------------------~-------------- 353 (494)
T COG0464 353 -----------------------------------------------------------------P-------------- 353 (494)
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred HHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHH
Q psy6523 409 IQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIE 488 (713)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~ 488 (713)
. ...
T Consensus 354 ----------------------------------------------------------------------~------~~~ 357 (494)
T COG0464 354 ----------------------------------------------------------------------S------EDG 357 (494)
T ss_pred ----------------------------------------------------------------------C------Cch
Confidence 0 000
Q ss_pred HHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC--CcccccHH
Q psy6523 489 KLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS--VERDIRFE 566 (713)
Q Consensus 489 ~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~~~ 566 (713)
..+|++++||++|||++...+|+||+|||+|+.||||++||||||+.|+|++||.++|.+||+.++++.. +..++++.
T Consensus 358 ~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~ 437 (494)
T COG0464 358 SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLE 437 (494)
T ss_pred HHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHH
Confidence 0149999999999999999999999999999999999999999999999999999999999999999654 45799999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hhhcCHHHHHHHHhHhhhc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRAR-RKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~-~~~v~~~d~~~a~~~~~~~ 614 (713)
.+++.|+||||+||..+|++|++.++++. ...++.+||.+|+..+.++
T Consensus 438 ~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 438 ELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988 6778888888888775443
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.5e-37 Score=344.78 Aligned_cols=322 Identities=22% Similarity=0.291 Sum_probs=232.7
Q ss_pred chhhhHHHHHHhhhccCccccccchhhhhhhhcccCcchhHHHHhhhhhhHhhhccccccCCCCcceeeecchhhhHhhh
Q psy6523 4 LINQIHISQTFNNISVKPLDIFNGHKNIARGAVANRTDACFIRVIGSELVQKYVGEGAVANRTDACFIRVIGSELVQKYV 83 (713)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aia~~~~~~~i~~~~s~li~~~~ 83 (713)
+++..+|.+.+.++... ..+ .-.......+...+.|+.+..++..+...+...+.+..+ .. ...-++..+..
T Consensus 141 lP~~~ei~~~l~~~~~~-~~~--~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~-~~---~~i~~~k~q~~- 212 (489)
T CHL00195 141 LPTESEIKKELTRLIKS-LNI--KIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDEN-SI---PLILEEKKQII- 212 (489)
T ss_pred CcCHHHHHHHHHHHHHh-cCC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChh-hH---HHHHHHHHHHH-
Confidence 45556777776666532 000 011222345555566788888888888766655443221 11 11111111111
Q ss_pred cCchhhhhhc-CCccccCCCCCcHHHHHHHHHHH-hCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 84 GEGARMIDAI-GGARFDDGAGGDNEVQRTMLELI-NQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 84 ge~~~lid~i-~~~r~~d~iG~~~~~~~~i~~~l-~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.. ..+++.. +..+|+|++| .+.+|+.+.+.. ..+..+..+|+.+|+|+|||||||||||++|+|+|++++.+|+.+
T Consensus 213 ~~-~~~le~~~~~~~~~dvgG-l~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 213 SQ-TEILEFYSVNEKISDIGG-LDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred hh-hccccccCCCCCHHHhcC-HHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 00 1123333 2456777766 455665555432 234556778999999999999999999999999999999999999
Q ss_pred ecccceeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCC
Q psy6523 162 IGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKR 241 (713)
Q Consensus 162 ~~~~i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~ 241 (713)
+.+.+.++|+|+++ .++...|+.+...+|++++|||+++++.+.
T Consensus 291 ~~~~l~~~~vGese----------------~~l~~~f~~A~~~~P~IL~IDEID~~~~~~-------------------- 334 (489)
T CHL00195 291 DVGKLFGGIVGESE----------------SRMRQMIRIAEALSPCILWIDEIDKAFSNS-------------------- 334 (489)
T ss_pred EhHHhcccccChHH----------------HHHHHHHHHHHhcCCcEEEehhhhhhhccc--------------------
Confidence 99999999999976 566666777777788888888876522100
Q ss_pred CCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceE
Q psy6523 242 QKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGT 321 (713)
Q Consensus 242 ~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~ 321 (713)
T Consensus 335 -------------------------------------------------------------------------------- 334 (489)
T CHL00195 335 -------------------------------------------------------------------------------- 334 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchh
Q psy6523 322 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKS 401 (713)
Q Consensus 322 v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~ 401 (713)
.+.
T Consensus 335 -----------------------------------------------------------------------~~~------ 337 (489)
T CHL00195 335 -----------------------------------------------------------------------ESK------ 337 (489)
T ss_pred -----------------------------------------------------------------------cCC------
Confidence 000
Q ss_pred hhhHHHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCccccccc
Q psy6523 402 IKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIG 481 (713)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~g 481 (713)
+
T Consensus 338 -------------------------------------------------------------------------------~ 338 (489)
T CHL00195 338 -------------------------------------------------------------------------------G 338 (489)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred ccHHHHHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-
Q psy6523 482 GCKEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE- 560 (713)
Q Consensus 482 g~~~~~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~- 560 (713)
.....++++++||++|+. ...+|+||+|||+|+.||||++|+||||+.|+|++|+.++|.+||+.++.+....
T Consensus 339 ----d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~ 412 (489)
T CHL00195 339 ----DSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS 412 (489)
T ss_pred ----CchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc
Confidence 001235899999999985 3457999999999999999999999999999999999999999999999987543
Q ss_pred -ccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 561 -RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 561 -~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
.+++++.||+.|+|||||||+++|++|+..|..++ ..++.+||..|+.++.|.
T Consensus 413 ~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 413 WKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred ccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCC
Confidence 58899999999999999999999999999998765 458999999999887664
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=339.80 Aligned_cols=125 Identities=44% Similarity=0.760 Sum_probs=118.3
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
..+.+.+||++||++....+|.||+|||+++.||||++||||||++|+|++||.++|.+||+.+++++.+..++++..++
T Consensus 303 ~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la 382 (438)
T PTZ00361 303 IQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFI 382 (438)
T ss_pred HHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHH
Confidence 34778899999999988889999999999999999999999999999999999999999999999999998999999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
..|+|||||||+++|++|++.|+++++..|+.+||..|++++...
T Consensus 383 ~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 383 MAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999987443
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=2.3e-37 Score=338.46 Aligned_cols=128 Identities=48% Similarity=0.837 Sum_probs=120.4
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
..+.+.++|.+||++...++|+||+|||+++.||+|++||||||+.|+|++|+.++|.+||+.+++++++..++++..||
T Consensus 251 ~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la 330 (389)
T PRK03992 251 VQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA 330 (389)
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence 35778899999999988889999999999999999999999999999999999999999999999999998889999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccc
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKI 617 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~ 617 (713)
..|+||||+||+++|++|++.|++++...|+.+||.+|++++.++...
T Consensus 331 ~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 331 ELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 999999999999999999999999998999999999999998765443
No 25
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.8e-37 Score=366.31 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=125.1
Q ss_pred HHHhhhhcccCCC---CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHh--hccCCCcc-cccHH
Q psy6523 493 VVETPLLHLDGFD---PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIH--ARSMSVER-DIRFE 566 (713)
Q Consensus 493 ~v~~lL~~~d~~~---~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~--~~~~~~~~-~~~~~ 566 (713)
.+++||++|||.. +.++|+||||||||+.|||||+||||||++|+|++|+..+|+++|..+ .+++++.. .+|++
T Consensus 1753 tL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~ 1832 (2281)
T CHL00206 1753 SLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTN 1832 (2281)
T ss_pred hHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHH
Confidence 3789999999874 456899999999999999999999999999999999999999999865 45566653 47899
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhh----cC
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVD----LA 642 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~ 642 (713)
.+|+.|.|||||||++||++|++.|+++++..|+.+++..|+.++..+...... ......+..++.++|+.+ ..
T Consensus 1833 ~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~~ia~yEiGhAvvq~~L~~~ 1910 (2281)
T CHL00206 1833 GFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDHGILFYQIGRAVAQNVLLSN 1910 (2281)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc--CcchhhhhhhHHhHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999887654321 112223444555554443 34
Q ss_pred CCCCcccc
Q psy6523 643 DSVAPTDI 650 (713)
Q Consensus 643 ~sv~~~d~ 650 (713)
.+|.+-.|
T Consensus 1911 ~pv~kISI 1918 (2281)
T CHL00206 1911 CPIDPISI 1918 (2281)
T ss_pred CCcceEEE
Confidence 44444443
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.2e-37 Score=346.38 Aligned_cols=274 Identities=32% Similarity=0.565 Sum_probs=222.9
Q ss_pred cCCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeee
Q psy6523 93 IGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 170 (713)
Q Consensus 93 i~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~ 170 (713)
.+.++|+|++|.++... +.+.+++++|+.|..+|..+|+|+|||||||||||++|+++|++++++|+.++++++.+.|
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 34678999888766443 3556678999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEc
Q psy6523 171 VGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250 (713)
Q Consensus 171 ~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig 250 (713)
.|+++ .++...|+.+....|+++++||++.+...
T Consensus 129 ~g~~~----------------~~l~~~f~~a~~~~p~Il~iDEid~l~~~------------------------------ 162 (495)
T TIGR01241 129 VGVGA----------------SRVRDLFEQAKKNAPCIIFIDEIDAVGRQ------------------------------ 162 (495)
T ss_pred hcccH----------------HHHHHHHHHHHhcCCCEEEEechhhhhhc------------------------------
Confidence 98865 45666677777778888888887552110
Q ss_pred cccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccC
Q psy6523 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE 330 (713)
Q Consensus 251 ~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~ 330 (713)
T Consensus 163 -------------------------------------------------------------------------------- 162 (495)
T TIGR01241 163 -------------------------------------------------------------------------------- 162 (495)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHHHHH
Q psy6523 331 SGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVEDDIQ 410 (713)
Q Consensus 331 ~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 410 (713)
+..
T Consensus 163 -------------------------------------------------------------r~~---------------- 165 (495)
T TIGR01241 163 -------------------------------------------------------------RGA---------------- 165 (495)
T ss_pred -------------------------------------------------------------ccc----------------
Confidence 000
Q ss_pred HHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHH
Q psy6523 411 AVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKL 490 (713)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~ 490 (713)
..++ ..+..
T Consensus 166 --------------------------------------------------------------------~~~~---~~~~~ 174 (495)
T TIGR01241 166 --------------------------------------------------------------------GLGG---GNDER 174 (495)
T ss_pred --------------------------------------------------------------------CcCC---ccHHH
Confidence 0000 01223
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+++++||.+||++...++|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.++++.++..++++..+|+
T Consensus 175 ~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 175 EQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred HHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 47899999999999888899999999999999999999999999999999999999999999999988888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccC-CCCchhhhhHHHHHHHHhh
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINAD-SENPKYIINVKQFAKFVVD 640 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 640 (713)
.|.||||+||+++|++|++.|++++...++.+|+++|++++.......... +......+..|+..+++..
T Consensus 255 ~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~ 325 (495)
T TIGR01241 255 RTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVG 325 (495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999998888999999999999987664433222 2233344555555555544
No 27
>KOG0651|consensus
Probab=100.00 E-value=4.4e-37 Score=307.50 Aligned_cols=127 Identities=46% Similarity=0.745 Sum_probs=119.6
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHH
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFEL 567 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 567 (713)
++..|.+-.||++|||++..++|=+|+|||+|+.|||||+||||+|+.+++|+|++..|..|++.+...+.....+|.+.
T Consensus 250 reiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~ea 329 (388)
T KOG0651|consen 250 REIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEA 329 (388)
T ss_pred HHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999888778899999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
+.+.++||.|+|+++.|++|.+.|+++.+..+-.+|+..+++++...
T Consensus 330 ivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 330 ILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred HHHHHhccChHHHhhhcccccccccchhhHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876543
No 28
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.8e-36 Score=342.63 Aligned_cols=160 Identities=31% Similarity=0.506 Sum_probs=134.3
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+++++||.+||++....+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.++++..+..++++..+|+
T Consensus 303 ~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~ 382 (638)
T CHL00176 303 EQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIAR 382 (638)
T ss_pred HHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHh
Confidence 47899999999999888899999999999999999999999999999999999999999999999988888999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCch----hhhhHHHHHHHHhhcCCCCC
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPK----YIINVKQFAKFVVDLADSVA 646 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~sv~ 646 (713)
.|.||||+||+++|++|++.|.+++...++.+||++|++++..+........+... +|+..|.+...+....++|.
T Consensus 383 ~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~ 462 (638)
T CHL00176 383 RTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQ 462 (638)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceE
Confidence 99999999999999999999999999999999999999998665443332223333 44445555444444444554
Q ss_pred cccc
Q psy6523 647 PTDI 650 (713)
Q Consensus 647 ~~d~ 650 (713)
+-.|
T Consensus 463 kvtI 466 (638)
T CHL00176 463 KVTL 466 (638)
T ss_pred EEEE
Confidence 4444
No 29
>KOG0741|consensus
Probab=100.00 E-value=8e-36 Score=315.45 Aligned_cols=124 Identities=39% Similarity=0.601 Sum_probs=113.6
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC----CCcccccHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM----SVERDIRFEL 567 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~~~~~~~~ 567 (713)
.+|||||+.|||++..++|+||+.|||.|.||.||+|||||+.+++|.+||++.|.+||+.|+.++ .++.|+|+.+
T Consensus 352 ~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~e 431 (744)
T KOG0741|consen 352 TVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKE 431 (744)
T ss_pred HHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999877 4568999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhh---------------hcCHHHHHHHHhHhhhcc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRK---------------VASEKDFLEAVNKVARCT 615 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~---------------~v~~~d~~~a~~~~~~~~ 615 (713)
||.+|..||||+|+.|++.|...|+.|.-+ .|++.||..|++++.|.-
T Consensus 432 lA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 432 LAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 999999999999999999999999987421 567788888888776653
No 30
>KOG0730|consensus
Probab=100.00 E-value=2.3e-34 Score=314.17 Aligned_cols=233 Identities=30% Similarity=0.455 Sum_probs=190.8
Q ss_pred ccCCCCCCCCCccccc------cHhhHHHHHHhcCCccchhhhhHHHHHHHHHHHhhhccCcccCCCCCCCCCccccccc
Q psy6523 367 CAGYVEGGKDSCQVTL------DEADIALLKSYGQGQYTKSIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTAD 440 (713)
Q Consensus 367 cAG~~~~~~d~c~~~l------~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (713)
--|.+.+|+++|.+++ .|....+....++...++...+.+...+..++......
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~-------------------- 277 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQ-------------------- 277 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccC--------------------
Confidence 3466778888888855 34444455566777777788888888888887755211
Q ss_pred hhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHHHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCC
Q psy6523 441 KQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPD 520 (713)
Q Consensus 441 ~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~ 520 (713)
.|++++++..+..--.....-+ ..+|+++++++.|||+.+..+++||+|||||+
T Consensus 278 --------------------~psii~IdEld~l~p~r~~~~~------~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~ 331 (693)
T KOG0730|consen 278 --------------------VPSIIFIDELDALCPKREGADD------VESRVVSQLLTLLDGLKPDAKVIVLAATNRPD 331 (693)
T ss_pred --------------------CCeeEeHHhHhhhCCcccccch------HHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc
Confidence 1555555444333222222111 46799999999999999999999999999999
Q ss_pred CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q psy6523 521 TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAS 600 (713)
Q Consensus 521 ~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~ 600 (713)
.||||++| ||||++++|+.|+..+|.+|++.+++++++.+++++..+|..|+||+||||.++|++|++.++++ +
T Consensus 332 sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~ 405 (693)
T KOG0730|consen 332 SLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----T 405 (693)
T ss_pred ccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----h
Confidence 99999999 99999999999999999999999999999998899999999999999999999999999999986 3
Q ss_pred HHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccccccccccccccccccccCCCCCCCCcccee
Q psy6523 601 EKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMM 680 (713)
Q Consensus 601 ~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re 680 (713)
+++|..|+ . .++||++|+
T Consensus 406 ~~~~~~A~-----------------------------------------------------------~---~i~psa~Re 423 (693)
T KOG0730|consen 406 LEIFQEAL-----------------------------------------------------------M---GIRPSALRE 423 (693)
T ss_pred HHHHHHHH-----------------------------------------------------------h---cCCchhhhh
Confidence 34444332 2 799999999
Q ss_pred eeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 681 QVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 681 ~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
...++|||+|+|||||+++|++|+++|+||++|
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~ 456 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKH 456 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999998
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.4e-34 Score=331.30 Aligned_cols=150 Identities=35% Similarity=0.606 Sum_probs=131.1
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+++++||.+||++....+|+||+|||+|+.||||++||||||++|+|++||.++|.+||+.++++.++..++|+..+|+
T Consensus 272 ~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~ 351 (644)
T PRK10733 272 EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 351 (644)
T ss_pred HHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHh
Confidence 47899999999999988899999999999999999999999999999999999999999999999999988999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccc-cCCCCchhhhhHHHHHHHHhh
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIIN-ADSENPKYIINVKQFAKFVVD 640 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 640 (713)
.|.|||||||.++|++|+..|++++...++..|+++|++++..+..... .......+.+..|++.+++..
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~ 422 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIG 422 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876644332 122233445555555555543
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.3e-34 Score=311.47 Aligned_cols=121 Identities=53% Similarity=0.949 Sum_probs=115.1
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+.+.++|.+||++...++++||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..+|+
T Consensus 243 ~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 46788899999999888899999999999999999999999999999999999999999999999998888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
.|+||||+||.++|++|++.|+++.+..|+.+||..|++++
T Consensus 323 ~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 323 MTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999864
No 33
>KOG0740|consensus
Probab=100.00 E-value=4.7e-35 Score=312.42 Aligned_cols=271 Identities=28% Similarity=0.452 Sum_probs=223.2
Q ss_pred hhhhcCCccccCCCCCcHHH---HHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 89 MIDAIGGARFDDGAGGDNEV---QRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 89 lid~i~~~r~~d~iG~~~~~---~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
+++....+.|+|+.|..... ++.++.++..|+.|..+- .|++|+||+||||||||||++|||.|.++.|+.|++++
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHH
Confidence 56777789999988865532 245555567889998764 78899999999999999999999999999999999999
Q ss_pred ceeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCce
Q psy6523 166 LVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDL 245 (713)
Q Consensus 166 i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~ 245 (713)
+.++|+||++ .-|+..|..+...+||++|++|++.++|..+
T Consensus 222 LtsK~~Ge~e----------------K~vralf~vAr~~qPsvifidEidslls~Rs----------------------- 262 (428)
T KOG0740|consen 222 LTSKYVGESE----------------KLVRALFKVARSLQPSVIFIDEIDSLLSKRS----------------------- 262 (428)
T ss_pred hhhhccChHH----------------HHHHHHHHHHHhcCCeEEEechhHHHHhhcC-----------------------
Confidence 9999999987 4588889999999999999999877554210
Q ss_pred EEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEee
Q psy6523 246 IVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGW 325 (713)
Q Consensus 246 vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~Gw 325 (713)
T Consensus 263 -------------------------------------------------------------------------------- 262 (428)
T KOG0740|consen 263 -------------------------------------------------------------------------------- 262 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhH
Q psy6523 326 GRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAV 405 (713)
Q Consensus 326 G~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~ 405 (713)
T Consensus 263 -------------------------------------------------------------------------------- 262 (428)
T KOG0740|consen 263 -------------------------------------------------------------------------------- 262 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHH
Q psy6523 406 EDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKE 485 (713)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~ 485 (713)
+.
T Consensus 263 ------------------------------------------------------------------------------~~ 264 (428)
T KOG0740|consen 263 ------------------------------------------------------------------------------DN 264 (428)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred HHHHHHHHHHhhhhcccCC--CCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-cc
Q psy6523 486 QIEKLREVVETPLLHLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RD 562 (713)
Q Consensus 486 ~~~~~~~~v~~lL~~~d~~--~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~ 562 (713)
.++..+|+..+||.++++. .+.++|+||+|||+|+.+|.|++| ||.+++|||+|+.++|..+|+.++.+.+.. .+
T Consensus 265 e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~ 342 (428)
T KOG0740|consen 265 EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSD 342 (428)
T ss_pred ccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccH
Confidence 1122348888999999988 345689999999999999999999 999999999999999999999999988554 67
Q ss_pred ccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcC
Q psy6523 563 IRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLA 642 (713)
Q Consensus 563 ~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 642 (713)
.|++.|++.|+||||+||.++|++|++..++..... + + .........+++...+|..++..++
T Consensus 343 ~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~-~--~--------------~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 343 LDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT-T--D--------------LEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc-h--h--------------hhhcchhccCCCCcchHHHHHHhhc
Confidence 899999999999999999999999999998875442 0 0 1112233457788899999999999
Q ss_pred CCCCcccccccccc
Q psy6523 643 DSVAPTDIEEGMRV 656 (713)
Q Consensus 643 ~sv~~~d~~~~~~~ 656 (713)
++++...++.+..+
T Consensus 406 ~~~s~~~l~~~~~~ 419 (428)
T KOG0740|consen 406 PSVSLEGLEKYEKW 419 (428)
T ss_pred cccCccccchhHHH
Confidence 99999988776543
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.5e-34 Score=315.06 Aligned_cols=124 Identities=31% Similarity=0.401 Sum_probs=96.2
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc-CCCcc--------
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS-MSVER-------- 561 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~-~~~~~-------- 561 (713)
++++++||++||++...++|+||+|||+|+.|||||+||||||++|+|++|+.++|++||+.++.. +++..
T Consensus 315 ~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~ 394 (512)
T TIGR03689 315 TTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGD 394 (512)
T ss_pred HHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCC
Confidence 588999999999999888999999999999999999999999999999999999999999999874 34411
Q ss_pred -cccHHHHHHh-----------------------------CCCCCHHHHHHHHHHHHHHHHHHH----hhhcCHHHHHHH
Q psy6523 562 -DIRFELLARL-----------------------------CPNSTGAEIRSVCTEAGMFAIRAR----RKVASEKDFLEA 607 (713)
Q Consensus 562 -~~~~~~la~~-----------------------------t~g~sgadi~~l~~~A~~~a~~~~----~~~v~~~d~~~a 607 (713)
..++..+++. ++.+|||+|+++|.+|...|+++. ...++.+|+..|
T Consensus 395 ~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a 474 (512)
T TIGR03689 395 REATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAA 474 (512)
T ss_pred CHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHH
Confidence 1122222222 456777777777777777777663 236677777777
Q ss_pred HhHhhhc
Q psy6523 608 VNKVARC 614 (713)
Q Consensus 608 ~~~~~~~ 614 (713)
+.+....
T Consensus 475 ~~~e~~~ 481 (512)
T TIGR03689 475 VLDEFRE 481 (512)
T ss_pred HHHhhcc
Confidence 7655433
No 35
>KOG0732|consensus
Probab=100.00 E-value=4.7e-33 Score=320.34 Aligned_cols=244 Identities=35% Similarity=0.590 Sum_probs=202.6
Q ss_pred ccccCCCCCcH---HHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc-----CceeEEeecccce
Q psy6523 96 ARFDDGAGGDN---EVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT-----DACFIRVIGSELV 167 (713)
Q Consensus 96 ~r~~d~iG~~~---~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~-----~~~~~~V~~~~i~ 167 (713)
+.|++++|... .+|+.+.-+|..|+.|..+++.||||||||||||||||+.|+|+|..+ ...|+.-.+++..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 56777666554 355677777899999999999999999999999999999999999866 4668888899999
Q ss_pred eeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEE
Q psy6523 168 QKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247 (713)
Q Consensus 168 s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv 247 (713)
|+|+||.+ ....-+|+.+...+|.|+|+++++..-
T Consensus 342 skwvgEaE----------------RqlrllFeeA~k~qPSIIffdeIdGla----------------------------- 376 (1080)
T KOG0732|consen 342 SKWVGEAE----------------RQLRLLFEEAQKTQPSIIFFDEIDGLA----------------------------- 376 (1080)
T ss_pred ccccCcHH----------------HHHHHHHHHHhccCceEEecccccccc-----------------------------
Confidence 99999977 567778999999999999999985410
Q ss_pred EEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 248 ~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
| +
T Consensus 377 --------------------------p-------------------------------v--------------------- 378 (1080)
T KOG0732|consen 377 --------------------------P-------------------------------V--------------------- 378 (1080)
T ss_pred --------------------------c-------------------------------c---------------------
Confidence 0 0
Q ss_pred ccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHH
Q psy6523 328 VEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVED 407 (713)
Q Consensus 328 ~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~ 407 (713)
T Consensus 379 -------------------------------------------------------------------------------- 378 (1080)
T KOG0732|consen 379 -------------------------------------------------------------------------------- 378 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHH
Q psy6523 408 DIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQI 487 (713)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~ 487 (713)
.+..+.
T Consensus 379 --------------------------------------------------------------------------rSskqE 384 (1080)
T KOG0732|consen 379 --------------------------------------------------------------------------RSSKQE 384 (1080)
T ss_pred --------------------------------------------------------------------------ccchHH
Confidence 001133
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHH
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFE 566 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 566 (713)
+....+|++||..|||+++++.|+||+|||||+.+||||+||||||+++||++|+.++|.+|+..+.++.... ...-+.
T Consensus 385 qih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~ 464 (1080)
T KOG0732|consen 385 QIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLL 464 (1080)
T ss_pred HhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHH
Confidence 4455899999999999999999999999999999999999999999999999999999999999999988643 344567
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHh----------------hhcCHHHHHHHHhHhhhccc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARR----------------KVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~----------------~~v~~~d~~~a~~~~~~~~~ 616 (713)
.||+.|.||-||||+++|.+|++.++++.. ..|...||..|+.+..++..
T Consensus 465 ~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 465 WLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred HHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCC
Confidence 899999999999999999999999998742 13556677777766655433
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.9e-31 Score=276.21 Aligned_cols=100 Identities=21% Similarity=0.134 Sum_probs=84.2
Q ss_pred HHHHhhhhcccCC------------CCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCC
Q psy6523 492 EVVETPLLHLDGF------------DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSV 559 (713)
Q Consensus 492 ~~v~~lL~~~d~~------------~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~ 559 (713)
.++++||+.||+. +...+|+||+|||+|+.|||||+||||||+.+ .+|+.++|.+||+.++++..+
T Consensus 239 iV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l 316 (413)
T PLN00020 239 MVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV 316 (413)
T ss_pred HHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC
Confidence 3348999998863 34567999999999999999999999999975 589999999999999999887
Q ss_pred cccccHHHHHHhCCC----CCHHHHHHHHHHHHHHHHHH
Q psy6523 560 ERDIRFELLARLCPN----STGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 560 ~~~~~~~~la~~t~g----~sgadi~~l~~~A~~~a~~~ 594 (713)
+ ..|+..|+..++| |.||--..+..++...-+.+
T Consensus 317 ~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 317 S-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred C-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 6 6889999999887 67887777877776655543
No 37
>KOG0736|consensus
Probab=99.94 E-value=2.6e-27 Score=261.01 Aligned_cols=177 Identities=16% Similarity=0.281 Sum_probs=133.3
Q ss_pred HHHHhhhhcccCC-CCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 492 EVVETPLLHLDGF-DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~-~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.++..+|. .|.+ .+..+++||++|++.+.|++.+++ -|-.+|.++.|++++|.+||+.|+....+..++.+..+|+
T Consensus 516 ~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~ 592 (953)
T KOG0736|consen 516 KVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLAR 592 (953)
T ss_pred HHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 33444444 3333 356679999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccc-cCCCCchhhhhHHHHHHHHhhcCCCCCccc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIIN-ADSENPKYIINVKQFAKFVVDLADSVAPTD 649 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d 649 (713)
+|.|||.+|+.+++..+...+..+....-..-++ .... ...-.....++..||.+++-+.
T Consensus 593 ~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~-----------~~~~~~~~~~~~~~l~~edf~kals~~-------- 653 (953)
T KOG0736|consen 593 KTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGL-----------QEEDEGELCAAGFLLTEEDFDKALSRL-------- 653 (953)
T ss_pred hcCCCCHHHHHHHhcCchHHHHHHHHhhcccccc-----------hhccccccccccceecHHHHHHHHHHH--------
Confidence 9999999999999988744443322111000000 0000 0011112455666666655443
Q ss_pred ccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 650 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+..|+.++.+|+ ||||+|||||||+++|+++.++|.+||+|
T Consensus 654 ----------~~~fs~aiGAPK-------------IPnV~WdDVGGLeevK~eIldTIqlPL~h 694 (953)
T KOG0736|consen 654 ----------QKEFSDAIGAPK-------------IPNVSWDDVGGLEEVKTEILDTIQLPLKH 694 (953)
T ss_pred ----------HHhhhhhcCCCC-------------CCccchhcccCHHHHHHHHHHHhcCcccC
Confidence 346888888887 99999999999999999999999999998
No 38
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-26 Score=260.53 Aligned_cols=165 Identities=38% Similarity=0.571 Sum_probs=139.3
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
.++++++++..||+++ ...++++++||+++.+|++++|||||++.+++..|+...|.+|++.....+....+.+...++
T Consensus 100 ~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a 178 (494)
T COG0464 100 ERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLA 178 (494)
T ss_pred hhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 3589999999999999 444999999999999999999999999999999999999999999999999988889999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCccc
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTD 649 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d 649 (713)
..+.||+++|+..+|.+|.+.++++.... ..
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~r~~~~------------------------~~------------------------- 209 (494)
T COG0464 179 ARTVGKSGADLGALAKEAALRELRRAIDL------------------------VG------------------------- 209 (494)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHhhhcc------------------------Cc-------------------------
Confidence 99999999999999999999998764200 00
Q ss_pred ccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 650 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
....++..+|..++. .+.|+ ++...+.|+|+|+|||||+++|++|+++|+||++|
T Consensus 210 ----~~~~~~~~~~~~~l~---~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~ 264 (494)
T COG0464 210 ----EYIGVTEDDFEEALK---KVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKR 264 (494)
T ss_pred ----ccccccHHHHHHHHH---hcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhC
Confidence 001122233333333 56676 77788899999999999999999999999999986
No 39
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=6.9e-24 Score=250.80 Aligned_cols=180 Identities=35% Similarity=0.595 Sum_probs=150.7
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
++++++|++.||++.....|+||+|||+|+.||++++|+||||+.|++++|+.++|.+||+.+.+++++..+++++.+++
T Consensus 296 ~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~ 375 (733)
T TIGR01243 296 KRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAE 375 (733)
T ss_pred HHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHH
Confidence 57889999999999888899999999999999999999999999999999999999999999999999888999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDI 650 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~ 650 (713)
.|+||+|+||..+|++|++.++++....-. .... . . .+ +.+.
T Consensus 376 ~t~G~~gadl~~l~~~a~~~al~r~~~~~~---------------~~~~--~--~------------------~i-~~~~ 417 (733)
T TIGR01243 376 VTHGFVGADLAALAKEAAMAALRRFIREGK---------------INFE--A--E------------------EI-PAEV 417 (733)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhccc---------------cccc--c--c------------------cc-cchh
Confidence 999999999999999999999876422000 0000 0 0 00 0000
Q ss_pred cccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 651 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
. ....++..||..++. .++|+++|+.+.++|+++|+||||++++|++|+++|+||++|
T Consensus 418 ~--~~~~v~~~df~~Al~---~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~ 475 (733)
T TIGR01243 418 L--KELKVTMKDFMEALK---MVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKH 475 (733)
T ss_pred c--ccccccHHHHHHHHh---hccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhC
Confidence 0 112356677777776 799999999999999999999999999999999999999986
No 40
>KOG0743|consensus
Probab=99.86 E-value=1.1e-21 Score=208.40 Aligned_cols=89 Identities=26% Similarity=0.353 Sum_probs=72.0
Q ss_pred HHHhhhhcccCCCCCC--CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 493 VVETPLLHLDGFDPRG--NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~--~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.++.||+.+||+-+.. ..+||.|||+++.|||||+||||.|.+|+++..+.++-+.+++.|+.--. +..-++++.+
T Consensus 320 TlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~ 397 (457)
T KOG0743|consen 320 TLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIER 397 (457)
T ss_pred ehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHH
Confidence 4788999999995443 57799999999999999999999999999999999999999999987543 1223444554
Q ss_pred hCCC--CCHHHHHHH
Q psy6523 571 LCPN--STGAEIRSV 583 (713)
Q Consensus 571 ~t~g--~sgadi~~l 583 (713)
.-+| .|+||+...
T Consensus 398 l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 398 LIEETEVTPAQVAEE 412 (457)
T ss_pred HhhcCccCHHHHHHH
Confidence 4443 599999874
No 41
>KOG0735|consensus
Probab=99.85 E-value=4.7e-21 Score=210.00 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=122.2
Q ss_pred CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 506 PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 506 ~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
....+.||++.+..+.|.|-|..|++|+.++.++.|+..+|.+||+..+++.-.. ..-|++-++..|+||..-|+.-++
T Consensus 538 ~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 538 RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 3445799999999999999999999999999999999999999999999876533 223444499999999999999999
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccccccccccccccccc
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQ 664 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~ 664 (713)
.+|...|..+... +... -++.++|.
T Consensus 618 eRai~~a~leris------------------------------------------------------~~~k-lltke~f~ 642 (952)
T KOG0735|consen 618 ERAIHEAFLERIS------------------------------------------------------NGPK-LLTKELFE 642 (952)
T ss_pred HHHHHHHHHHHhc------------------------------------------------------cCcc-cchHHHHH
Confidence 9998888743211 0000 13444555
Q ss_pred cccCCCCCCCCccceeeeeecCC-cccccccchHHHHHHHHHHHhcccCC
Q psy6523 665 IHIPLPPKIDPTVTMMQVEEKPD-VTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 665 ~~~~~p~~~~Ps~~re~~~~~P~-v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
.++. .+.|+++|..-...+. ..|+|||||+++|+.|+++|+||-||
T Consensus 643 ksL~---~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~ky 689 (952)
T KOG0735|consen 643 KSLK---DFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKY 689 (952)
T ss_pred HHHH---hcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccc
Confidence 5554 7889999998888875 99999999999999999999999987
No 42
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.
Probab=99.79 E-value=7e-19 Score=178.66 Aligned_cols=182 Identities=44% Similarity=0.814 Sum_probs=151.0
Q ss_pred ccccccccCcCCchhhhhhcc-CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~-~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|.||..+...++||++.+... ..+.|+|+||+++||||||||+.... .....|++|..+....- .......|.+++.
T Consensus 1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~-~~~~~~~v~~~~~ 78 (232)
T cd00190 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSA-PSNYTVRLGSHDLSSNE-GGGQVIKVKKVIV 78 (232)
T ss_pred CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCC-CccEEEEeCcccccCCC-CceEEEEEEEEEE
Confidence 568888999999999999866 78999999999999999999998654 45677888877754431 2345678999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCC-CccCCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG-EKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
||+|+.. ...+||||++|..|+.++..++|+|||... ....+..+.+.|||...........++...+.+++...|
T Consensus 79 hp~y~~~---~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C 155 (232)
T cd00190 79 HPNYNPS---TYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAEC 155 (232)
T ss_pred CCCCCCC---CCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHh
Confidence 9999874 568999999999999999999999999876 444568899999999887667788999999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.........+...++|++......+.|.+
T Consensus 156 ~~~~~~~~~~~~~~~C~~~~~~~~~~c~g 184 (232)
T cd00190 156 KRAYSYGGTITDNMLCAGGLEGGKDACQG 184 (232)
T ss_pred hhhccCcccCCCceEeeCCCCCCCccccC
Confidence 87654434578999999987656667775
No 43
>KOG3627|consensus
Probab=99.78 E-value=6.3e-19 Score=183.01 Aligned_cols=185 Identities=41% Similarity=0.762 Sum_probs=152.6
Q ss_pred ccccccccccCcCCchhhhhhccC--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccce--EEEEe
Q psy6523 192 DRIVGGWTTEVNEYPWVVALEQAG--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQI--ETRRV 267 (713)
Q Consensus 192 ~rI~~g~~~~~~~~P~~~~l~e~~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~--~~~~v 267 (713)
.||++|.++..+++||++++.... .+.|||++|+++||+|||||+...... ...|++|+.+.....+... ....+
T Consensus 11 ~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~~v 89 (256)
T KOG3627|consen 11 GRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVGDV 89 (256)
T ss_pred CCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhhcee
Confidence 689999999999999999998655 789999999999999999999886323 7778888876555433332 55567
Q ss_pred eEEeeCCCCCcCCCCCCc-cceEEEecCCCCCCCCCcccccCCCCCC---ccCCCceEEEeeccccCC-CCcchhccccc
Q psy6523 268 VKVLTHPKYNAQGAKSHD-HDIALLKLDTPLEFKPTVSPVCLPQLGE---KFTQRTGTVVGWGRVEES-GQIASDLRATQ 342 (713)
Q Consensus 268 ~~ii~h~~~~~~~~~~~~-~diall~L~~p~~~~~~i~~icl~~~~~---~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~ 342 (713)
.+++.||+|+... .. +||||++|..++.|++.++|||||.... ...+..|.++|||++... ...+..|+++.
T Consensus 90 ~~~i~H~~y~~~~---~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~ 166 (256)
T KOG3627|consen 90 EKIIVHPNYNPRT---LENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVD 166 (256)
T ss_pred eEEEECCCCCCCC---CCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEE
Confidence 7889999999753 33 9999999999999999999999996554 444578889999998764 56688999999
Q ss_pred ccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 343 VPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 343 ~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++++...|+........++..|+|||...++.++|++
T Consensus 167 v~i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 204 (256)
T KOG3627|consen 167 VPIISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQG 204 (256)
T ss_pred EeEcChhHhcccccCccccCCCEEeeCccCCCCccccC
Confidence 99999999998766554667779999998888999996
No 44
>KOG0742|consensus
Probab=99.75 E-value=9.5e-18 Score=173.96 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=76.2
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc----c--
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE----R-- 561 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~----~-- 561 (713)
+..+..+|.||-.-. +.+..++++.|||+|.++|.|+-- |||..|+||+|..++|.++|..|+.++-+. .
T Consensus 466 EaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~ 541 (630)
T KOG0742|consen 466 EAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP 541 (630)
T ss_pred HHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC
Confidence 444567777774433 345678999999999999999999 999999999999999999999998765211 0
Q ss_pred -----------------ccc----HHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 562 -----------------DIR----FELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 562 -----------------~~~----~~~la~~t~g~sgadi~~l~~~A 587 (713)
.++ +.+.|++|+||||.+|..|+..-
T Consensus 542 ~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 542 GKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred chhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 112 46789999999999999998654
No 45
>KOG0729|consensus
Probab=99.74 E-value=7.4e-18 Score=166.05 Aligned_cols=174 Identities=77% Similarity=1.208 Sum_probs=153.1
Q ss_pred cccHhhHHHHHHhcCCccchhhhhHHHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCC
Q psy6523 381 TLDEADIALLKSYGQGQYTKSIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKI 460 (713)
Q Consensus 381 ~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 460 (713)
.++|.|+..+.++|.+.+...+..++.++..+.+++.++.|+++++++++|+..|++..++..+++++++++.
T Consensus 26 ~l~e~di~~lk~yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtglapp~~wdl~~dkq~mq~eqplqva------- 98 (435)
T KOG0729|consen 26 PLDEGDIALLKSYGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGLAPPALWDLAADKQRMQEEQPLQVA------- 98 (435)
T ss_pred ccchhhHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCCCChHHHHHhhhHHHhcccCCceeh-------
Confidence 6789999999999999999999999999999999999999999999999999999999999999988875442
Q ss_pred CccchhcccccCCCcccccccccHHHHHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecC
Q psy6523 461 DPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGL 540 (713)
Q Consensus 461 ~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~ 540 (713)
|.-+.|
T Consensus 99 ----------------------------------------------------------------------rctkii---- 104 (435)
T KOG0729|consen 99 ----------------------------------------------------------------------RCTKII---- 104 (435)
T ss_pred ----------------------------------------------------------------------eeeeec----
Confidence 111111
Q ss_pred CCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccccccc
Q psy6523 541 PDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINA 620 (713)
Q Consensus 541 P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~ 620 (713)
+.
T Consensus 105 ------------------------------------------------------------------------------~~ 106 (435)
T KOG0729|consen 105 ------------------------------------------------------------------------------SG 106 (435)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred CCCCchhhhhHHHHHHHHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHH
Q psy6523 621 DSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQI 700 (713)
Q Consensus 621 ~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk 700 (713)
+++.+.|.|+.++|.+++......|++.||++++++++.+..|+-.+++|++++||..++.+.+.|+|||+||||..+..
T Consensus 107 ~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvty~dvggckeqi 186 (435)
T KOG0729|consen 107 NSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQI 186 (435)
T ss_pred CCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcccccccchHHHH
Confidence 11223466677778888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCC
Q psy6523 701 EKLREVVETPLLH 713 (713)
Q Consensus 701 ~~L~~av~~Pl~~ 713 (713)
++|+|.||.|+.|
T Consensus 187 eklrevve~pll~ 199 (435)
T KOG0729|consen 187 EKLREVVELPLLH 199 (435)
T ss_pred HHHHHHHhccccC
Confidence 9999999999987
No 46
>KOG0744|consensus
Probab=99.74 E-value=1.5e-18 Score=175.63 Aligned_cols=114 Identities=25% Similarity=0.266 Sum_probs=88.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC-------------
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS------------- 558 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~------------- 558 (713)
|+||.+|++||.++...+|++++|+|-.+.||-|+.- |-|-+.|++.|+..+|.+|++..+..+-
T Consensus 280 RvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~ 357 (423)
T KOG0744|consen 280 RVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTG 357 (423)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchh
Confidence 9999999999999999999999999999999999999 9999999999999999999998876431
Q ss_pred Ccc-----cccHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 559 VER-----DIRFELLARL-CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 559 ~~~-----~~~~~~la~~-t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
... +.....++.. +.|.||+-|+.|--.|...-. ....++..+|..|+-
T Consensus 358 ~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~--~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 358 VKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYF--RTFTVDLSNFLLALL 412 (423)
T ss_pred hhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhcc--CCCccChHHHHHHHH
Confidence 111 1112333433 589999999998766632222 123567777766654
No 47
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=99.73 E-value=1.6e-17 Score=168.84 Aligned_cols=182 Identities=44% Similarity=0.806 Sum_probs=148.7
Q ss_pred cccccccccCcCCchhhhhhccC-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 193 RIVGGWTTEVNEYPWVVALEQAG-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 193 rI~~g~~~~~~~~P~~~~l~e~~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
||.+|..+..++|||++.+.... .+.|+|+||+++||||||||+.... ...+.|.++..+.....+ .....|..++
T Consensus 1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~-~~~~~v~~g~~~~~~~~~--~~~~~v~~~~ 77 (229)
T smart00020 1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSD-PSNIRVRLGSHDLSSGEE--GQVIKVSKVI 77 (229)
T ss_pred CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCC-CcceEEEeCcccCCCCCC--ceEEeeEEEE
Confidence 57889999999999999998766 8899999999999999999998766 456788888776544321 2567899999
Q ss_pred eCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCC-CccCCCceEEEeeccccC-CCCcchhcccccccccChh
Q psy6523 272 THPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG-EKFTQRTGTVVGWGRVEE-SGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 272 ~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~-~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~~~~~~~~ 349 (713)
.||+|+. ....+|+||++|.+|+.+...++|+|++... +...+..+.+.|||.... .+.....++...+.+....
T Consensus 78 ~~p~~~~---~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 154 (229)
T smart00020 78 IHPNYNP---STYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNA 154 (229)
T ss_pred ECCCCCC---CCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHH
Confidence 9999986 4568999999999999999999999999863 444567899999998773 4556778889999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.+.......+...++|++......+.|.+
T Consensus 155 ~C~~~~~~~~~~~~~~~C~~~~~~~~~~c~g 185 (229)
T smart00020 155 TCRRAYSGGGAITDNMLCAGGLEGGKDACQG 185 (229)
T ss_pred HhhhhhccccccCCCcEeecCCCCCCcccCC
Confidence 9987654433578899999987655566653
No 48
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....
Probab=99.66 E-value=1.9e-16 Score=159.57 Aligned_cols=176 Identities=44% Similarity=0.824 Sum_probs=144.6
Q ss_pred ccccccccCcCCchhhhhhccC-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|.||......++||++.+...+ .++|+|++|+++||||||||+.. ..+..++++. ......+.......|.+++.
T Consensus 1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~---~~~~~v~~g~-~~~~~~~~~~~~~~v~~~~~ 76 (220)
T PF00089_consen 1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG---ASDIKVRLGT-YSIRNSDGSEQTIKVSKIII 76 (220)
T ss_dssp SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS---GGSEEEEESE-SBTTSTTTTSEEEEEEEEEE
T ss_pred CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc---cccccccccc-cccccccccccccccccccc
Confidence 6788999999999999999877 89999999999999999999988 4456677777 32233333356788999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
||.|+... .++||||++|..++.+...++|+|++..... ..+..+.+.|||.....+ ....++...+.+++...|
T Consensus 77 h~~~~~~~---~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c 152 (220)
T PF00089_consen 77 HPKYDPST---YDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTC 152 (220)
T ss_dssp ETTSBTTT---TTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHH
T ss_pred cccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 99999853 5899999999999999999999999995443 456789999999977666 677888999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
... +...++..++|++.. +..+.|.+
T Consensus 153 ~~~--~~~~~~~~~~c~~~~-~~~~~~~g 178 (220)
T PF00089_consen 153 RSS--YNDNLTPNMICAGSS-GSGDACQG 178 (220)
T ss_dssp HHH--TTTTSTTTEEEEETT-SSSBGGTT
T ss_pred ccc--ccccccccccccccc-cccccccc
Confidence 875 333478899999987 55667765
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.63 E-value=5.8e-17 Score=150.09 Aligned_cols=49 Identities=39% Similarity=0.705 Sum_probs=43.2
Q ss_pred HHHHHhhhhcccCCCCC-CCeEEEEecCCCCCccccccCCCCCCeEEEecC
Q psy6523 491 REVVETPLLHLDGFDPR-GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGL 540 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~-~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~ 540 (713)
++++++|+..|+..... .+++||+|||+++.+||+++| |||+++|++++
T Consensus 83 ~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 83 QRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 47888999999988665 569999999999999999999 99999999985
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.63 E-value=6.8e-16 Score=162.10 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=72.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC--Cccccc
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS--VERDIR 564 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~--~~~~~~ 564 (713)
.++..|+..|+.. .++++||+|++... .++|+|+| ||+..|+|+.++.+++.+|++.++.+.. ++++.
T Consensus 146 e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~- 220 (287)
T CHL00181 146 EAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA- 220 (287)
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-
Confidence 6677888888753 35677888776422 34699999 9999999999999999999999998654 33222
Q ss_pred HHHHHH----h--CCCCC-HHHHHHHHHHHHHHHHHHH
Q psy6523 565 FELLAR----L--CPNST-GAEIRSVCTEAGMFAIRAR 595 (713)
Q Consensus 565 ~~~la~----~--t~g~s-gadi~~l~~~A~~~a~~~~ 595 (713)
...+.. . .+.|. ++++++++..|...-..|.
T Consensus 221 ~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~ 258 (287)
T CHL00181 221 EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRI 258 (287)
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 222222 2 24566 8999999999987776653
No 51
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.55 E-value=7.8e-15 Score=154.20 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=71.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCC--CCC---ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNR--PDT---LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRF 565 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~--p~~---lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 565 (713)
++.+.|+..|+.- ..+++||+|++. ++. ++|+|++ ||+..|+|+.++.+++.+|++.++.+.... ..-.+
T Consensus 145 ~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~ 220 (284)
T TIGR02880 145 EAIEILLQVMENQ--RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAE 220 (284)
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHH
Confidence 5677788888743 356778887664 333 4899999 999999999999999999999999876432 11122
Q ss_pred HHHHHh------CCCC-CHHHHHHHHHHHHHHHHHHH
Q psy6523 566 ELLARL------CPNS-TGAEIRSVCTEAGMFAIRAR 595 (713)
Q Consensus 566 ~~la~~------t~g~-sgadi~~l~~~A~~~a~~~~ 595 (713)
..++.. -+.+ ++.++++++..|.+....|-
T Consensus 221 ~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 221 EAFADYIALRRTQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 333332 1333 48999999999977666553
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=1.1e-14 Score=172.10 Aligned_cols=110 Identities=23% Similarity=0.355 Sum_probs=77.7
Q ss_pred hhHhhhcCchhhhhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---
Q psy6523 78 LVQKYVGEGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT--- 154 (713)
Q Consensus 78 li~~~~ge~~~lid~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~--- 154 (713)
.+++|.-. +.+...+-.+++++|.++++.+.+ +.|... ...++||+||||||||++|+++|...
T Consensus 164 ~l~~~~~~---l~~~~r~~~l~~~igr~~ei~~~~-~~L~~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 164 ALEKYTVD---LTEKAKNGKIDPLIGREDELERTI-QVLCRR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred HHHHHhhh---HHHHHhcCCCCcccCcHHHHHHHH-HHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45555543 444455568889999888887644 555332 35689999999999999999999987
Q ss_pred -------CceeEEeecccce--eeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCc
Q psy6523 155 -------DACFIRVIGSELV--QKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGK 216 (713)
Q Consensus 155 -------~~~~~~V~~~~i~--s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~ 216 (713)
+..++.++...++ .+|.|+.+ .++...++......|+++++||.+.
T Consensus 231 ~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e----------------~~l~~i~~~~~~~~~~ILfiDEih~ 285 (731)
T TIGR02639 231 KVPENLKNAKIYSLDMGSLLAGTKYRGDFE----------------ERLKAVVSEIEKEPNAILFIDEIHT 285 (731)
T ss_pred CCchhhcCCeEEEecHHHHhhhccccchHH----------------HHHHHHHHHHhccCCeEEEEecHHH
Confidence 7889999988888 57888755 3454444444344566777766643
No 53
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.49 E-value=1.3e-13 Score=143.72 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCC-----CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRP-----DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRF 565 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p-----~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 565 (713)
..+..|+..|+.. ..++++|++++.. ..++|+|++ ||+.+|+|+.++.+++.+|++.++...... ++--+
T Consensus 128 ~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~ 203 (261)
T TIGR02881 128 EAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAK 203 (261)
T ss_pred HHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHH
Confidence 5677788888764 3455566655432 237899999 999999999999999999999998866443 12223
Q ss_pred HHHHHh-------CC--CCCHHHHHHHHHHHHHHHHHH
Q psy6523 566 ELLARL-------CP--NSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 566 ~~la~~-------t~--g~sgadi~~l~~~A~~~a~~~ 594 (713)
..|++. +. .-+++.+.+++..|..+...+
T Consensus 204 ~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 204 WKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 344321 11 235778888888876655544
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.45 E-value=2.4e-13 Score=161.69 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhh
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHA 554 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~ 554 (713)
.++++|+|||+++.|||+|++ ||+ .|+|+.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 478999999999999999999 995 78999999999999999886
No 55
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.41 E-value=2.9e-12 Score=138.06 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=83.1
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
.+.+|++||++..++++|++ ||...+.++.|+.+++.+|++.......+. ++--+..|++.+.|.- ..+..+++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 36789999999999999999 999999999999999999999888776554 3444788999998854 7788888887
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 588 GMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 588 ~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
...|..+....++.+++..+++..
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 777766656689999999888654
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.39 E-value=3.7e-12 Score=135.92 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=81.7
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
.+++|++||++..+++++++ ||...+.++.|+.+++.+|++.......+. ++..++.|++.+.|+- ..+..++..+
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~ 205 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRV 205 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHH
Confidence 36899999999999999999 999999999999999999999887765444 3445678999998865 7778888887
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 588 GMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 588 ~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
...|.......++.+++..++..
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHH
Confidence 76666555567899999888876
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.33 E-value=3e-12 Score=149.94 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=73.5
Q ss_pred CCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH-----HHHHhCC---
Q psy6523 507 RGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE-----LLARLCP--- 573 (713)
Q Consensus 507 ~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~-----~la~~t~--- 573 (713)
++.+.+|+|||.++ .+||||.| ||+ .|+|+.|+.+++.+||+.+..++....++++. ..+..+.
T Consensus 313 ~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 46789999999875 58999999 996 79999999999999999887776544444433 3333333
Q ss_pred --CCCHHHHHHHHHHHHHHH----HHHHhhhcCHHHHHHHHhHhh
Q psy6523 574 --NSTGAEIRSVCTEAGMFA----IRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 574 --g~sgadi~~l~~~A~~~a----~~~~~~~v~~~d~~~a~~~~~ 612 (713)
-+-+...-.++.+|+... .......++.+|+.+.+.+..
T Consensus 390 ~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 344557778888887533 122234577888887776543
No 58
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=6.2e-11 Score=135.08 Aligned_cols=96 Identities=22% Similarity=0.212 Sum_probs=79.1
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~ 588 (713)
.++++|||.|+.|+|++++ |+. .|+|+.++.+++.+|++..+++..+. ++.-++.|+..+ .+++++.++++.|+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 4566778889999999999 985 67888888999999999999877654 333456666655 38999999999999
Q ss_pred HHHHHHHhhhcCHHHHHHHHhH
Q psy6523 589 MFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 589 ~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
..|..+++..|+.+|++.++..
T Consensus 310 ~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 310 GIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHhhCCCcEEcHHHHHHHhCC
Confidence 9998888788999999999863
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.28 E-value=4.5e-11 Score=118.27 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCC
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNS 575 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~ 575 (713)
+..+|+||++...|.+.|+- ||-....+.+=+.++-.+|++.....+.+. .+--..+||+++.|-
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 35699999999999999999 999999999999999999999888887776 444567899988874
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=4.1e-10 Score=125.98 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=73.7
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. .+.+++|++||.|..|++++++ |+ ..+.|..|+.++...+++..+....+. ++-.++.|++.
T Consensus 133 a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 133 AFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777753 3467788888889999999999 88 489999999999999999887654433 34457778887
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
+.| +.+++-+.+..+...+ ...|+.+++.+++.
T Consensus 208 s~G-dlR~aln~Le~l~~~~----~~~It~e~V~~~l~ 240 (472)
T PRK14962 208 ASG-GLRDALTMLEQVWKFS----EGKITLETVHEALG 240 (472)
T ss_pred hCC-CHHHHHHHHHHHHHhc----CCCCCHHHHHHHHc
Confidence 654 4445555544433221 22477777776664
No 61
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.16 E-value=6.5e-11 Score=141.83 Aligned_cols=85 Identities=28% Similarity=0.430 Sum_probs=61.4
Q ss_pred hhHhhhcCchhhhhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---
Q psy6523 78 LVQKYVGEGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT--- 154 (713)
Q Consensus 78 li~~~~ge~~~lid~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~--- 154 (713)
.+++|.-. +-+...+-.+++++|.+.++.+.+.-+.+. ...+++|+||||||||++|+++|...
T Consensus 160 ~l~~~~~~---l~~~~r~~~l~~vigr~~ei~~~i~iL~r~----------~~~n~lL~G~pGvGKT~l~~~la~~i~~~ 226 (857)
T PRK10865 160 ALKKYTID---LTERAEQGKLDPVIGRDEEIRRTIQVLQRR----------TKNNPVLIGEPGVGKTAIVEGLAQRIING 226 (857)
T ss_pred HHHHHhhh---HHHHHhcCCCCcCCCCHHHHHHHHHHHhcC----------CcCceEEECCCCCCHHHHHHHHHHHhhcC
Confidence 45555543 444455567888999888766555444332 23578999999999999999999987
Q ss_pred -------CceeEEeecccce--eeeeccee
Q psy6523 155 -------DACFIRVIGSELV--QKYVGERV 175 (713)
Q Consensus 155 -------~~~~~~V~~~~i~--s~~~Ges~ 175 (713)
+.+++.++...++ .+|.|+.+
T Consensus 227 ~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e 256 (857)
T PRK10865 227 EVPEGLKGRRVLALDMGALVAGAKYRGEFE 256 (857)
T ss_pred CCchhhCCCEEEEEehhhhhhccchhhhhH
Confidence 7889998888776 55767643
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=1.2e-10 Score=139.15 Aligned_cols=68 Identities=26% Similarity=0.321 Sum_probs=54.0
Q ss_pred CCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC----Cc-ccccHHHHHHhCCCCC
Q psy6523 507 RGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS----VE-RDIRFELLARLCPNST 576 (713)
Q Consensus 507 ~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~----~~-~~~~~~~la~~t~g~s 576 (713)
++.+.+||||+..+ .+||||.| ||. .|.|+.|+.+++.+||+.+.+.+. +. .+..+..++..+.+|-
T Consensus 314 ~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 314 RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 45788999999754 49999999 995 799999999999999887765543 22 4556778888888875
Q ss_pred H
Q psy6523 577 G 577 (713)
Q Consensus 577 g 577 (713)
+
T Consensus 391 ~ 391 (852)
T TIGR03345 391 P 391 (852)
T ss_pred c
Confidence 4
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.11 E-value=1e-09 Score=124.29 Aligned_cols=89 Identities=16% Similarity=0.160 Sum_probs=61.7
Q ss_pred EEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy6523 511 KVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGM 589 (713)
Q Consensus 511 ~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~~ 589 (713)
.+|+++|.+..+++.-+| +.-..|.|+.|+..+...+++..+...++. ++-.+..|++.+. .||+.+++....
T Consensus 132 ~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~ 205 (482)
T PRK04195 132 PIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA 205 (482)
T ss_pred CEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH
Confidence 467788999999883334 344789999999999999999988766544 3445778887764 588887776644
Q ss_pred HHHHHHhhhcCHHHHHHH
Q psy6523 590 FAIRARRKVASEKDFLEA 607 (713)
Q Consensus 590 ~a~~~~~~~v~~~d~~~a 607 (713)
.+ .+...++.+++...
T Consensus 206 ~a--~~~~~it~~~v~~~ 221 (482)
T PRK04195 206 IA--EGYGKLTLEDVKTL 221 (482)
T ss_pred Hh--cCCCCCcHHHHHHh
Confidence 22 23345666655443
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.3e-09 Score=117.02 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=78.6
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. .+.+.+|++|+.++.|.++++. |+ ..++|+.|+.++..++++..+++.+.. ++..+..++..
T Consensus 135 a~naLLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 135 SFNALLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456677777753 4467778888889999999988 87 678999999999999999888766543 34456778888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
+.| +.+++.+++..+... +...++.+++.+++.
T Consensus 210 s~G-~~R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 210 AHG-SMRDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred cCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 876 677777777766432 345677777766554
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=2.1e-09 Score=120.84 Aligned_cols=109 Identities=11% Similarity=0.193 Sum_probs=80.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
..++.||..|+. +...+++|++|+.++.|+++++. |+ ..++|..++.++..++++..+++.+.. ++..+..|++
T Consensus 143 ~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 143 GAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred HHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456778888874 45577888889999999999998 88 578899999999999999998866554 3345778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a 607 (713)
.+.| +.+++.+++..++..+-.. ...|+.+++.+.
T Consensus 218 ~s~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~l 252 (507)
T PRK06645 218 KSEG-SARDAVSILDQAASMSAKS-DNIISPQVINQM 252 (507)
T ss_pred HcCC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHH
Confidence 8877 8888888888876544211 123555444433
No 66
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=8.3e-10 Score=120.75 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=62.3
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
...|.||+.|+.- .+++++|.+|+.++.|+|++++ |+ ..++|+.|+.++..++|.. ...+. ......++..
T Consensus 132 ~aanaLLk~LEep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~---~~~~~-~~~a~~la~~ 202 (394)
T PRK07940 132 RAANALLKAVEEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR---RDGVD-PETARRAARA 202 (394)
T ss_pred HHHHHHHHHhhcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH---hcCCC-HHHHHHHHHH
Confidence 3457788888753 4455666666669999999999 98 6999999999988777763 22333 3346678999
Q ss_pred CCCCCHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCT 585 (713)
Q Consensus 572 t~g~sgadi~~l~~ 585 (713)
+.|..+..+..+..
T Consensus 203 s~G~~~~A~~l~~~ 216 (394)
T PRK07940 203 SQGHIGRARRLATD 216 (394)
T ss_pred cCCCHHHHHHHhcC
Confidence 99998877665543
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=1.3e-09 Score=123.53 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=77.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. .+.+.+|++||.+..+++.+++ |+ ..+.|..++.++-.+.++..+.+..+. ++..+..||+
T Consensus 133 ~A~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 133 HSFNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred HHHHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567788888753 4567888888999999999987 88 688899999999999998888766544 3455778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a 607 (713)
.+.| +.+++.+++..+... +...|+.+++...
T Consensus 208 ~S~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 208 SAQG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8776 777877777665432 2345666665543
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.06 E-value=2.6e-09 Score=118.70 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=64.8
Q ss_pred hhhhcccCCCCCCCeEEEEecC--CCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-----CCcccccHHHH
Q psy6523 496 TPLLHLDGFDPRGNIKVLMATN--RPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM-----SVERDIRFELL 568 (713)
Q Consensus 496 ~lL~~~d~~~~~~~v~vi~aTN--~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~-----~~~~~~~~~~l 568 (713)
.||..|+. +.+++|++|+ ....+++++++ |+ ..+.+..|+.++..++++..+... .++ +..++.|
T Consensus 111 ~LL~~le~----~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l 182 (413)
T PRK13342 111 ALLPHVED----GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDAL 182 (413)
T ss_pred HHHHHhhc----CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHH
Confidence 34444542 3566777653 34589999999 99 789999999999999999877542 222 3335677
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
++.+.| ....+.+++..++.. ...++.+++.+++..
T Consensus 183 ~~~s~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 183 ARLANG-DARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHhCCC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 777644 455555555555332 334566666555543
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.05 E-value=1.1e-09 Score=121.55 Aligned_cols=128 Identities=22% Similarity=0.277 Sum_probs=87.9
Q ss_pred CeEEEEecCCCCC---ccccccCCCCCCe--EEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 509 NIKVLMATNRPDT---LDPALMRPGRLDR--KVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 509 ~v~vi~aTN~p~~---lD~Al~RpGRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
..+||.+++.|+. +++.++. ||.. .+.|+.||.++|.+|++..+....+. ++--++.||+...| +.++|..
T Consensus 233 ~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~ 309 (405)
T TIGR00362 233 KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEG 309 (405)
T ss_pred CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 3456666666665 5688888 9974 79999999999999999998866554 44557788887654 7788888
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCccccc
Q psy6523 583 VCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIE 651 (713)
Q Consensus 583 l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~ 651 (713)
++......|... ...++.+.+.+++....... ...++...+.+++.+.- .|+.++|.
T Consensus 310 ~l~~l~~~a~~~-~~~it~~~~~~~L~~~~~~~----------~~~it~~~I~~~Va~~~-~v~~~~l~ 366 (405)
T TIGR00362 310 ALNRLLAYASLT-GKPITLELAKEALKDLLRAK----------KKEITIENIQEVVAKYY-NIKVSDLK 366 (405)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHhcccc----------CCCCCHHHHHHHHHHHc-CCCHHHHh
Confidence 888776665443 45688888888887643221 12355566666665543 35555554
No 70
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.8e-09 Score=117.71 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=68.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +..++++|++||.++.|.+++++ |+. .+.|..++.++-.+.++..+.+..+. ++-.+..||+
T Consensus 136 ~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 136 QSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred HHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 567888888874 45678999999999999999999 984 57888888888888888887765543 3455778888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.++|- .+|.-+++..+.
T Consensus 211 ~S~Gd-~RdAL~lLeq~i 227 (484)
T PRK14956 211 KGDGS-VRDMLSFMEQAI 227 (484)
T ss_pred HcCCh-HHHHHHHHHHHH
Confidence 87763 566666665543
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.1e-09 Score=121.41 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||+.|+. +.+++++|++||.++.|.+.++. |+ ..+.|..++.++..+.|+..+.+..+. ++..+..|++
T Consensus 139 ~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~ 213 (700)
T PRK12323 139 HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQ 213 (700)
T ss_pred HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 567889988884 45678999999999999999999 88 788899999999999888877655444 2233567787
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.++| +..+..+++..+.
T Consensus 214 ~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 214 AAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7665 5667777766554
No 72
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.03 E-value=3.2e-10 Score=136.40 Aligned_cols=68 Identities=25% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-----ccccHHHHHHhCCCCC
Q psy6523 507 RGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-----RDIRFELLARLCPNST 576 (713)
Q Consensus 507 ~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~~~~la~~t~g~s 576 (713)
++.+.+|+|||..+ .+|+|+.| ||. .|.++.|+.+++.+||+.+..++... .+..+...+..+.+|-
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 45789999999874 58999999 997 48999999999999999887776543 3345666777787775
Q ss_pred H
Q psy6523 577 G 577 (713)
Q Consensus 577 g 577 (713)
.
T Consensus 377 ~ 377 (852)
T TIGR03346 377 T 377 (852)
T ss_pred c
Confidence 4
No 73
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.02 E-value=1.1e-09 Score=123.05 Aligned_cols=99 Identities=23% Similarity=0.273 Sum_probs=74.1
Q ss_pred eEEEEecCCCCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHH
Q psy6523 510 IKVLMATNRPDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSV 583 (713)
Q Consensus 510 v~vi~aTN~p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l 583 (713)
.+||++++.|.. +++.|+. ||. ..+.|..|+.++|.+||+..+...++. ++.-++.||+.+.| +.++|..+
T Consensus 246 ~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~ 322 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGA 322 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHH
Confidence 356666666655 7799998 997 589999999999999999998765433 33447888887654 77888888
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 584 CTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 584 ~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
+......+... ...++.+.+.+++....
T Consensus 323 l~~l~~~~~~~-~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 323 LNRLIAYASLT-GKPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHhh-CCCCCHHHHHHHHHHhh
Confidence 87776655544 35689998888888653
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=6.2e-09 Score=119.15 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=70.3
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||+.|+. ...++.+|++||.++.|.+.++. |+ .++.|..++.++-.+.|+..+.+..+. ++-.+..|++
T Consensus 134 ~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 134 HAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred HHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457788888874 34578899999999999999999 88 788899999999999998888765543 3455778888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.|- ..|.-+++..+.
T Consensus 209 ~A~Gs-mRdALsLLdQAi 225 (830)
T PRK07003 209 AAQGS-MRDALSLTDQAI 225 (830)
T ss_pred HcCCC-HHHHHHHHHHHH
Confidence 88774 466666665554
No 75
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.98 E-value=1.1e-08 Score=112.04 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=75.1
Q ss_pred CCeEEEEecCCCC---CccccccCCCCCC-eEEEecCCCHHHHHHHHHHhhcc-C---CCcccccHHH---HHHhCCCCC
Q psy6523 508 GNIKVLMATNRPD---TLDPALMRPGRLD-RKVEFGLPDLEGRTHIFKIHARS-M---SVERDIRFEL---LARLCPNST 576 (713)
Q Consensus 508 ~~v~vi~aTN~p~---~lD~Al~RpGRfd-~~i~i~~P~~~~R~~il~~~~~~-~---~~~~~~~~~~---la~~t~g~s 576 (713)
.++.+|++||.++ .+++.+.+ ||. ..|+|++++.++..+|++..+.. . .++ +.-++. ++..+.|.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd- 239 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGD- 239 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCC-
Confidence 4688999999986 58888888 885 78999999999999999988762 1 122 111233 33344453
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 577 GAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 577 gadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
...+-.+|+.|+..|..++...|+.+|+..|++...
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 344455888999999888888899999999988763
No 76
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.98 E-value=3e-10 Score=136.32 Aligned_cols=85 Identities=26% Similarity=0.365 Sum_probs=61.2
Q ss_pred hhHhhhcCchhhhhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---
Q psy6523 78 LVQKYVGEGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT--- 154 (713)
Q Consensus 78 li~~~~ge~~~lid~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~--- 154 (713)
.+++|... +.+....-+++.++|-++++.+.+..+.. +.++++||+||||||||++|+++|...
T Consensus 161 ~l~~~~~~---l~~~a~~~~~~~~igr~~ei~~~~~~L~r----------~~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 161 TLEEFGTN---LTKEAIDGNLDPVIGREKEIERVIQILGR----------RTKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred HHHHHHHH---HHHHHHcCCCCCCCCcHHHHHHHHHHHcc----------cccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45555433 33333344678888888887765544332 356689999999999999999999975
Q ss_pred -------CceeEEeecccce--eeeeccee
Q psy6523 155 -------DACFIRVIGSELV--QKYVGERV 175 (713)
Q Consensus 155 -------~~~~~~V~~~~i~--s~~~Ges~ 175 (713)
+..++.++.+.++ ++|.||.+
T Consensus 228 ~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 228 DVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 4789999988887 57777744
No 77
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=6.9e-09 Score=117.36 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+.. .+.+.+|++|+.+..+.+.++. |. ..++|..++.++-.+.++..+.+.++. ++..+..|++
T Consensus 134 ~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 134 HSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred HHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4577888888854 4567888888999999999988 87 667788888888888887777765544 3445777888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.+.| +..++.+++..+... +...|+.+++.+.+
T Consensus 209 ~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 209 AANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 8765 778888888776432 22345555554433
No 78
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.5e-09 Score=111.86 Aligned_cols=216 Identities=29% Similarity=0.434 Sum_probs=146.0
Q ss_pred ccccccccccCcCCchhhhhhc-c----CceeeeeeeechhhHHhhcccccCCC-CCCce-EEEEccccCCcccccceEE
Q psy6523 192 DRIVGGWTTEVNEYPWVVALEQ-A----GKFFCGGTLISDRYVLTAAHCVRSSK-RQKDL-IVVISEHNRATVYETQIET 264 (713)
Q Consensus 192 ~rI~~g~~~~~~~~P~~~~l~e-~----~~~~cggslI~~r~vltaa~c~~~~~-~~~~~-vv~ig~~~~~~~~d~~~~~ 264 (713)
.||.||..+...+||+++.+-. + ...+||||.+..|||||||||++... ...+. +|+.+-.+.+ +.++
T Consensus 31 ~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~S-----q~~r 105 (413)
T COG5640 31 SRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSS-----QAER 105 (413)
T ss_pred eeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEecccccc-----cccC
Confidence 5899999999999999988763 2 34789999999999999999998765 22333 3444433322 3456
Q ss_pred EEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCC-cccccCCC--CCCccCCCceEEEeeccccCC---CCcc--h
Q psy6523 265 RRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPT-VSPVCLPQ--LGEKFTQRTGTVVGWGRVEES---GQIA--S 336 (713)
Q Consensus 265 ~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~-i~~icl~~--~~~~~~~~~~~v~GwG~~~~~---~~~~--~ 336 (713)
..|.++..|..|-. ...+||+|+++|.++...... +....-+. ..+...-..-.+.+|+-+... ...+ -
T Consensus 106 g~vr~i~~~efY~~---~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt 182 (413)
T COG5640 106 GHVRTIYVHEFYSP---GNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGT 182 (413)
T ss_pred cceEEEeeeccccc---ccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccc
Confidence 78888999988874 577899999999987654321 11111111 222233344455677744432 2222 3
Q ss_pred hcccccccccChhhhhcCCCcc------ccccCcccccCCCCCCCCCccccc------cHhh---HHHHHHhcCC-ccch
Q psy6523 337 DLRATQVPVMSNQECRQFPGFE------AKLTGNMMCAGYVEGGKDSCQVTL------DEAD---IALLKSYGQG-QYTK 400 (713)
Q Consensus 337 ~L~~~~~~~~~~~~c~~~~~~~------~~it~~~~cAG~~~~~~d~c~~~l------~e~d---~~~~~~~~~~-~~~~ 400 (713)
.|.+..+++++.++|.++.+-. ..+|. +|||... +|+|++.. +.++ ..-+.++|.+ |.++
T Consensus 183 ~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~--~cag~~~--~daCqGDSGGPi~~~g~~G~vQ~GVvSwG~~~Cg~t 258 (413)
T COG5640 183 ILHEVAVLFVPLSTCAQYKGCANASDGATGLTG--FCAGRPP--KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGT 258 (413)
T ss_pred eeeeeeeeeechHHhhhhccccccCCCCCCccc--eecCCCC--cccccCCCCCceEEeCCCccEEEeEEEecCCCCCCC
Confidence 7889999999999998766411 13444 9999887 99999933 3332 1234567777 7778
Q ss_pred hhhhHHHHHHHHHHHhhhc
Q psy6523 401 SIKAVEDDIQAVIKRVNEL 419 (713)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~ 419 (713)
....++.++.-+..|+.+.
T Consensus 259 ~~~gVyT~vsny~~WI~a~ 277 (413)
T COG5640 259 LIPGVYTNVSNYQDWIAAM 277 (413)
T ss_pred CcceeEEehhHHHHHHHHH
Confidence 8888877777777777764
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.4e-08 Score=116.41 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=70.3
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+. +.+.+.+|++|+.+..|.+.++. |. ..++|..++.++..+.|+..+.+.++. ++..+..|++
T Consensus 139 ~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~ 213 (618)
T PRK14951 139 TAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR 213 (618)
T ss_pred HHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457778888875 34567888888889999999988 87 788999999999999998887766554 3445778888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +..++.+++..+.
T Consensus 214 ~s~G-slR~al~lLdq~i 230 (618)
T PRK14951 214 AARG-SMRDALSLTDQAI 230 (618)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8776 7778877776554
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.96 E-value=1.3e-08 Score=111.07 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=75.6
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. ...+++|++||.++.+.+++++ |+ ..++++.|+.++..++++..+++.++. ++..+..|+..
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777777653 3467788888999999999998 88 478999999999999999988766543 33446667777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
+.| +...+.+.+..+...+ ...++.+++.+++
T Consensus 208 ~~g-~~~~a~~~lekl~~~~----~~~it~~~v~~~~ 239 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG----NGNITYEDVNELL 239 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 765 6666666666554432 2347777666554
No 81
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=2e-08 Score=115.18 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=70.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. ...+++|.+|+.|+.|++.+++ |+. .+.|..|+.++-...++..+.+.++. ++..+..+++
T Consensus 134 ~a~naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 134 GAFNALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred HHHHHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3577888888753 4567788888899999999998 885 57899999999999999888766544 3445777888
Q ss_pred hCCCCCHHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGM 589 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~ 589 (713)
.+.| +..+..+++..+..
T Consensus 209 ~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 209 AAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 8876 77888777776643
No 82
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.95 E-value=4.1e-08 Score=99.30 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=78.4
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~ 588 (713)
.-+||||.|.-.|-.-|+- ||-....+.+=+.++-.+|++.....+.+. .+-...++|+++.|. +.=-..|+++-.
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHHHH
Confidence 4689999999999999999 999999999999999999999988877766 445567899998874 455555666666
Q ss_pred HHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 589 MFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 589 ~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
-.|.-++...|+.+--..|++..
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHh
Confidence 66666666677766666666644
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.5e-08 Score=113.16 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=78.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
..+|.||..|+.. .+.+.+|++|+.++.|.+.++. |+ ..+.|..++.++..+.++..+.+.+.. ++..+..|++
T Consensus 131 ~A~NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 131 SAFNALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4577888888853 4567888888999999999998 87 568999999999999999888766544 4455778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLE 606 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~ 606 (713)
.+.| +..++.+++..+....- ..|+.+++.+
T Consensus 206 ~s~G-slR~alslLdqli~y~~----~~It~e~V~~ 236 (491)
T PRK14964 206 NSSG-SMRNALFLLEQAAIYSN----NKISEKSVRD 236 (491)
T ss_pred HcCC-CHHHHHHHHHHHHHhcC----CCCCHHHHHH
Confidence 8865 78888888877765431 2455554444
No 84
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.94 E-value=6.9e-09 Score=107.48 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=81.5
Q ss_pred HHHHhhhhcccC-CCCCCCeEEEEecCC------------CCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC
Q psy6523 492 EVVETPLLHLDG-FDPRGNIKVLMATNR------------PDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS 558 (713)
Q Consensus 492 ~~v~~lL~~~d~-~~~~~~v~vi~aTN~------------p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~ 558 (713)
+.++.|-..|+. +.+ ++|.|||| |.-||..|+- |+ ..|...+=+.++-++|++.-...-.
T Consensus 306 E~FsFlnrAlEse~aP----Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~ 378 (450)
T COG1224 306 ECFSFLNRALESELAP----IIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEED 378 (450)
T ss_pred HHHHHHHHHhhcccCc----EEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhc
Confidence 555655556643 333 78889997 5667777665 44 2233333378899999998776554
Q ss_pred Cc-ccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 559 VE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 559 ~~-~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
+. ++-.++.|+....--|-.--.+|+.-|.+.|.+++...|..+|++.|.+-+
T Consensus 379 i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 379 IELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred cccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 44 455678888887777777778888899999999999999999999987654
No 85
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.93 E-value=1.8e-08 Score=108.92 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=64.2
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~ 588 (713)
..+|.+||.+..+.+.|.. |+ ..+.+..|+.++..++++..+.+.++. ++..+..|++.+ +.|++.++....
T Consensus 156 ~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~ 228 (337)
T PRK12402 156 CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQ 228 (337)
T ss_pred CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 3456677777888888887 76 578999999999999999988776654 444567777765 455666665554
Q ss_pred HHHHHHHhhhcCHHHHHHHHh
Q psy6523 589 MFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 589 ~~a~~~~~~~v~~~d~~~a~~ 609 (713)
..+. ....|+.+++.+++.
T Consensus 229 ~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 229 TAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHH--cCCCCCHHHHHHHhC
Confidence 4332 234688888877665
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=1.8e-08 Score=115.71 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=68.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||+.|+. +.+.+.+|++|+.++.|.+.++. |. ..++|..++.++-.+.|+..+....+. ++..+..|++
T Consensus 134 ~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~ 208 (647)
T PRK07994 134 HSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLAR 208 (647)
T ss_pred HHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 567888888884 45678888889999999999999 86 889999999999999998887654443 3445677887
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+.| +.++.-+++..|
T Consensus 209 ~s~G-s~R~Al~lldqa 224 (647)
T PRK07994 209 AADG-SMRDALSLTDQA 224 (647)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7766 455555666554
No 87
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.92 E-value=5.3e-09 Score=115.78 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=83.3
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCC---CccccccCCCCCC-eEEEecCCCHHHHHHHHHHhhccC--C-CcccccH
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPD---TLDPALMRPGRLD-RKVEFGLPDLEGRTHIFKIHARSM--S-VERDIRF 565 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~---~lD~Al~RpGRfd-~~i~i~~P~~~~R~~il~~~~~~~--~-~~~~~~~ 565 (713)
.+..|+..++.... .++.+|+++|.++ .+++.+.+ ||. ..|.|+.++.++..+||+..+..- + .-++..+
T Consensus 158 ~l~~l~~~~~~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l 234 (394)
T PRK00411 158 VLYSLLRAHEEYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVL 234 (394)
T ss_pred HHHHHHHhhhccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHH
Confidence 34555555554432 2688889888764 57787776 664 678999999999999999887532 1 1123345
Q ss_pred HHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 566 ELLARLCPNST--GAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 566 ~~la~~t~g~s--gadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
+.+++.+.+.+ ...+-.+|+.|+..|..++...|+.+|+..|++...
T Consensus 235 ~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 235 DLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 66777775433 344557889999999888888999999999998763
No 88
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.92 E-value=4.4e-09 Score=109.58 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred CeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH---h---CC-CCC
Q psy6523 509 NIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR---L---CP-NST 576 (713)
Q Consensus 509 ~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~---~---t~-g~s 576 (713)
+..||+|+|... .+++||++ || ..+++++|+.++-.+|++.+.. ++ +...+.+.+ . .+ -..
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~ 223 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEIT 223 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccC
Confidence 557899999763 67999999 99 7899999999999999998752 22 111222211 1 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 577 GAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 577 gadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
.+ +++.+.-|...+....+..++.+||.+.+..+
T Consensus 224 ~~-~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 224 SG-LRASLMIAEVATQQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred Cc-HHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 11 44444444444444445567777777666554
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=2.7e-08 Score=116.07 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +.+++.+|++|+.+..|.+.++. |. ..+.|..++.++-.+.|+..+....+. .+-.+..|++
T Consensus 134 eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~ 208 (944)
T PRK14949 134 SSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAK 208 (944)
T ss_pred HHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 577888988884 45567788889999999999998 87 778899999999999888877654433 2334677887
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +.+++-+++..|.
T Consensus 209 ~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 209 AANG-SMRDALSLTDQAI 225 (944)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7766 4566667766554
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.89 E-value=1.1e-08 Score=104.25 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=64.6
Q ss_pred eEEEEecCCCCCcc---ccccCCCCC--CeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHH
Q psy6523 510 IKVLMATNRPDTLD---PALMRPGRL--DRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSV 583 (713)
Q Consensus 510 v~vi~aTN~p~~lD---~Al~RpGRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l 583 (713)
.+|+.++..+..++ +.|.+ || ...|.++.|+.+++..+++.+..+..+. ++--+..|+.. -+-+.+++.++
T Consensus 125 ~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~ 201 (226)
T TIGR03420 125 RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMAL 201 (226)
T ss_pred eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHH
Confidence 34554444555443 77887 66 5789999999999999999887655443 33346677774 56688999999
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 584 CTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 584 ~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
++++...+.. ....|+.+.+.+.+
T Consensus 202 l~~~~~~~~~-~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 202 LDALDRASLA-AKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHH-hCCCCCHHHHHHHh
Confidence 9887654444 34467766555443
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=3.4e-08 Score=111.58 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=66.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
..++.||..|+.. ...+++|.+||.+..+++++.+ |+. .++|..|+.++-.+.++..+.+.++. ++-.+..|++
T Consensus 131 ~a~naLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~ 205 (504)
T PRK14963 131 SAFNALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVAR 205 (504)
T ss_pred HHHHHHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567778777753 3467888889999999999998 875 78999999999999999888766554 3344667777
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+.| +..++.+++..+
T Consensus 206 ~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 206 LADG-AMRDAESLLERL 221 (504)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7654 445555555544
No 92
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.89 E-value=7.1e-09 Score=122.77 Aligned_cols=99 Identities=9% Similarity=0.109 Sum_probs=64.3
Q ss_pred CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc-----CCCc------ccccHHHHHHh-CCC
Q psy6523 507 RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS-----MSVE------RDIRFELLARL-CPN 574 (713)
Q Consensus 507 ~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~-----~~~~------~~~~~~~la~~-t~g 574 (713)
.++|++|+|||.. .|+|||+. ||+ .|.+..++.++..+|.+.++-. ..+. .+--+..|++. +..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 3578999999988 59999999 995 7889999999999999988841 1111 11224445542 223
Q ss_pred CCHHHHHHHHHHHHHHHHHHH----h---hhcCHHHHHHHHh
Q psy6523 575 STGAEIRSVCTEAGMFAIRAR----R---KVASEKDFLEAVN 609 (713)
Q Consensus 575 ~sgadi~~l~~~A~~~a~~~~----~---~~v~~~d~~~a~~ 609 (713)
+-.+.|+.++...+..++.+. . -.++.+++.+-+.
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 344566666655555544432 1 2467777766664
No 93
>PRK06893 DNA replication initiation factor; Validated
Probab=98.89 E-value=1.9e-08 Score=102.80 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=64.7
Q ss_pred CeEEEEecCCCCCcc---ccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLD---PALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD---~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
.++++++++.|..++ |.|++..++...+.++.||.++|.+||+.......+. ++.-++.|+++.+| +.+.+..++
T Consensus 126 ~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l 204 (229)
T PRK06893 126 TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDAL 204 (229)
T ss_pred cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHH
Confidence 355666667788776 8999844456899999999999999999777644433 34446778887764 556666666
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
..-...+..+ .+.+|...+.+++
T Consensus 205 ~~l~~~~~~~-~~~it~~~v~~~L 227 (229)
T PRK06893 205 DLLDKASLQA-QRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHh
Confidence 6543333322 2357766665544
No 94
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=2e-08 Score=114.96 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
..++.||..|+.. .+.+.+|++||.+..+.+.++. |+ ..+.|..++.++-.+.|+..+.+.++. ++-.+..|++
T Consensus 134 ~A~NALLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~ 208 (709)
T PRK08691 134 SAFNAMLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGR 208 (709)
T ss_pred HHHHHHHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 4567788888853 4567888899999999999986 87 667788899999999999888876554 3445778888
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.+. -+.+++.+++..+... +...|+.+++...+
T Consensus 209 ~A~-GslRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 209 AAA-GSMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HhC-CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 774 4678888888776543 23346665555544
No 95
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.86 E-value=4.5e-08 Score=99.88 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=63.2
Q ss_pred CeEEEEecCCCC---CccccccCCCCC--CeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 509 NIKVLMATNRPD---TLDPALMRPGRL--DRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 509 ~v~vi~aTN~p~---~lD~Al~RpGRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
..++|.+++.+. .+.+.|+. || ...++++.|+..++..+++.+.....+. ++--++.|++.. +=+..++..
T Consensus 122 ~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~-~gn~~~l~~ 198 (227)
T PRK08903 122 QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHF-RRDMPSLMA 198 (227)
T ss_pred CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHH
Confidence 333455554432 34566776 77 4799999999999999999887665544 334466777743 347788888
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 583 VCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 583 l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
+++.-...|... ...|+...+.+++.
T Consensus 199 ~l~~l~~~~~~~-~~~i~~~~~~~~l~ 224 (227)
T PRK08903 199 LLDALDRYSLEQ-KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 888754444333 35677777666653
No 96
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=2.6e-08 Score=112.97 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=66.7
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+. +.+.+++|++|+.++.|.+++++ |+. .++|..|+.++....++..+.+.+.. ++-.+..++..
T Consensus 135 A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l 209 (605)
T PRK05896 135 AWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL 209 (605)
T ss_pred HHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45678888875 34567888888999999999999 875 78999999999999998887665433 23446778877
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEA 587 (713)
Q Consensus 572 t~g~sgadi~~l~~~A 587 (713)
+.| +.+++.+++...
T Consensus 210 S~G-dlR~AlnlLekL 224 (605)
T PRK05896 210 ADG-SLRDGLSILDQL 224 (605)
T ss_pred cCC-cHHHHHHHHHHH
Confidence 765 566666666653
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=5.4e-08 Score=115.33 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=67.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||+.|+.. ...+++|++|+.++.|-+.|+. |. .+++|..++.++..++|+..+.+..+. ++..+..|++
T Consensus 135 ~a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 135 QGFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5577888888864 3467888888999999999998 76 678899999999999998888665554 3344566777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +..++.+++....
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7765 6666666665543
No 98
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.83 E-value=5.2e-08 Score=104.23 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCeEEEEecCCCC-CccccccCCCCCCeEEEecCCCH-HHHHHHHHHhhccCC----C------c---------------
Q psy6523 508 GNIKVLMATNRPD-TLDPALMRPGRLDRKVEFGLPDL-EGRTHIFKIHARSMS----V------E--------------- 560 (713)
Q Consensus 508 ~~v~vi~aTN~p~-~lD~Al~RpGRfd~~i~i~~P~~-~~R~~il~~~~~~~~----~------~--------------- 560 (713)
.++++++|+|-.+ .++++++. ||...+.++.|.. ++|.+|++.....-. . .
T Consensus 170 ~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~ 247 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARL 247 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhc
Confidence 4678888888544 69999999 9999999999966 999999987432100 0 0
Q ss_pred -----ccccHH---HHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 561 -----RDIRFE---LLARLCP--NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 561 -----~~~~~~---~la~~t~--g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
++.-+. .++..+. | .=++|. +++.|...|+.+++..|+.+|+..+..
T Consensus 248 ~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 248 PQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred CCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 011112 2333332 3 235555 889999999999999999999987664
No 99
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=4.6e-08 Score=112.68 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=66.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+. +.+.+++|++||.++.|.+.++. |. ..+.|..++.++-...++..+++.++. ++-.+..|++
T Consensus 134 ~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 134 NAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred HHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456888888885 45578888999999999999998 76 478888888888888888877665543 3445677787
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+.| +-.++.+++..+
T Consensus 209 ~a~G-~lr~al~~Ldql 224 (576)
T PRK14965 209 KGDG-SMRDSLSTLDQV 224 (576)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7775 555665555544
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=7e-08 Score=109.29 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=66.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +.+.+++|++|+.+..+.+.++. |. ..++|..++.++-.+.++..+.+..+. ++..+..|+.
T Consensus 134 ~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~ 208 (546)
T PRK14957 134 QSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAY 208 (546)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 467788888885 34567777777889999999888 87 889999999999888888877765544 3445667777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+. -+..++-+++..+.
T Consensus 209 ~s~-GdlR~alnlLek~i 225 (546)
T PRK14957 209 HAK-GSLRDALSLLDQAI 225 (546)
T ss_pred HcC-CCHHHHHHHHHHHH
Confidence 764 45566666665544
No 101
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.83 E-value=5e-08 Score=104.68 Aligned_cols=66 Identities=26% Similarity=0.307 Sum_probs=50.0
Q ss_pred hhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 91 DAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
+...|.+|+|++|.+. +.+.+..++... ..|..+|||||||+|||++|+++|++.+.+++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 13 QKYRPSTIDECILPAA-DKETFKSIVKKG--------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred eccCCCcHHHhcCcHH-HHHHHHHHHhcC--------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 4455678899888765 444666666532 34667888999999999999999999988888777654
No 102
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.7e-09 Score=112.39 Aligned_cols=87 Identities=51% Similarity=0.812 Sum_probs=78.8
Q ss_pred hhhhHHHHHHHHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHH
Q psy6523 627 YIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREV 706 (713)
Q Consensus 627 ~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~a 706 (713)
+.|..+.-.+++..+.+.+.++.+.++.+|.+.+..|+....+|++++|++..+...+.|+|||+|||||++++|||+|+
T Consensus 87 ~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~ 166 (406)
T COG1222 87 AIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREV 166 (406)
T ss_pred EEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHH
Confidence 34444445566677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCC
Q psy6523 707 VETPLLH 713 (713)
Q Consensus 707 v~~Pl~~ 713 (713)
||+||+|
T Consensus 167 VELPL~~ 173 (406)
T COG1222 167 VELPLKN 173 (406)
T ss_pred hcccccC
Confidence 9999997
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=5.3e-08 Score=110.96 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=63.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. ...+++|++||.++.|.+.+++ |+. .|.|..++.++-.++|+..+.+..+. ++-.+..|++
T Consensus 134 ~a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 134 EAFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4467788888753 3568888999999999999998 874 68899999999999998877765543 3344667777
Q ss_pred hCCCCCHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCT 585 (713)
Q Consensus 571 ~t~g~sgadi~~l~~ 585 (713)
.+.| +..++-+++.
T Consensus 209 ~s~G-dlR~Al~lLe 222 (624)
T PRK14959 209 RAAG-SVRDSMSLLG 222 (624)
T ss_pred HcCC-CHHHHHHHHH
Confidence 6654 2333434443
No 104
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.81 E-value=4.6e-08 Score=103.20 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceee--eecc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK--YVGE 173 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~--~~Ge 173 (713)
+...+.|||.||||||||++++.+|..++++++.|+..+-++. +.|.
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~ 109 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGK 109 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCC
Confidence 3456789999999999999999999999999999998777665 4444
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=9.4e-08 Score=107.64 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=74.4
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. ...+++|.+|+.++.|++++++ |+. .+.|..|+.++...+++..++..++. ++-.+..|+.
T Consensus 134 ~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~ 208 (486)
T PRK14953 134 EAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208 (486)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456777777753 3456777778889999999998 875 68999999999999999988876654 3344667777
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.+.| +.+++.+++..+...+ ...++.+++.+.+
T Consensus 209 ~s~G-~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 209 ASEG-GMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HcCC-CHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 7654 4566666666664332 3346666655543
No 106
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.81 E-value=4.6e-08 Score=114.58 Aligned_cols=66 Identities=30% Similarity=0.489 Sum_probs=49.2
Q ss_pred hhhhcCCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 89 MIDAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 89 lid~i~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
+.+...+.+|+|.+|.+..+. ..+..++... ....+|||||||||||++|+++|+..+.+|+.+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 444555678999998777654 3555555432 23468999999999999999999999888877664
No 107
>PLN03025 replication factor C subunit; Provisional
Probab=98.80 E-value=8.4e-08 Score=103.04 Aligned_cols=88 Identities=9% Similarity=0.049 Sum_probs=58.9
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~ 588 (713)
..+|.+||.+..+.++|+. |. ..+.|+.|+.++....++..+++.++. ++..+..++..+. .|++.+++.--
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~----gDlR~aln~Lq 202 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD----GDMRQALNNLQ 202 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHH
Confidence 4567788889999999998 87 578999999999999999887765543 3445777777655 35554444332
Q ss_pred HHHHHHHhhhcCHHHHHH
Q psy6523 589 MFAIRARRKVASEKDFLE 606 (713)
Q Consensus 589 ~~a~~~~~~~v~~~d~~~ 606 (713)
... .+...++.+++..
T Consensus 203 ~~~--~~~~~i~~~~v~~ 218 (319)
T PLN03025 203 ATH--SGFGFVNQENVFK 218 (319)
T ss_pred HHH--hcCCCCCHHHHHH
Confidence 111 1233566655543
No 108
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.5e-07 Score=106.17 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=71.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. ...+.+|.+|+.+..|.++++. |. .+++|..++.++-.+.++..+.+.++. ++-.+..|++
T Consensus 132 ~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 132 EAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred HHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567788888864 3457777888889999999999 85 688999999998888888877765543 3455777888
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFA 591 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a 591 (713)
.+.| +.+++.+++..|...+
T Consensus 207 ~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 207 SGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HcCC-cHHHHHHHHHHHHHhc
Confidence 7776 7888888887766543
No 109
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.1e-07 Score=108.72 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=69.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +...+++|++|+.++.|.++++. |+. .+.|..|+.++..++++..+.+..+. ++..+..||+
T Consensus 134 ~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~ 208 (563)
T PRK06647 134 SAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAY 208 (563)
T ss_pred HHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457788888884 45577888888889999999998 876 58899999999999998887655543 3445677888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +..++.+++..++
T Consensus 209 ~s~G-dlR~alslLdkli 225 (563)
T PRK06647 209 KSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7776 6777777776554
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.3e-07 Score=108.21 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+. ..+.+++|++|+.++.|.++++. |. .+++|..++.++-.+.++..+.+.+.. ++..+..+++
T Consensus 133 ~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 133 AGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 357788888885 45578888999999999999998 84 689999999999898888888765543 2334555665
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+. -+..++.+++...
T Consensus 208 ~s~-GdlR~aln~Ldql 223 (584)
T PRK14952 208 AGG-GSPRDTLSVLDQL 223 (584)
T ss_pred HcC-CCHHHHHHHHHHH
Confidence 544 4556666666554
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=7.9e-08 Score=109.49 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+. +.+.+++|++|+.++.+.+.++. |. ..++|..|+.++-.+.++..+.+-.+. ++..+..|++
T Consensus 134 ~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~ 208 (527)
T PRK14969 134 SAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR 208 (527)
T ss_pred HHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456788888886 34567888888889999988887 76 788999999999888888777654443 2344567777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +..++.+++..|.
T Consensus 209 ~s~G-slr~al~lldqai 225 (527)
T PRK14969 209 AAAG-SMRDALSLLDQAI 225 (527)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7654 5677777776654
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=1.4e-07 Score=108.46 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=69.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...|.||..|+.. .+.+++|++|+.++.+.+.++. |. ..+.|..|+.++-...++..+.+.... ++..+..|++
T Consensus 147 ~a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 147 AAFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578888888854 4467788888888999999988 87 579999999999999999888766544 3345666777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +..++.+++..+.
T Consensus 222 ~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 222 AAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7765 6777777776654
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=2.6e-08 Score=111.23 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=84.2
Q ss_pred CeEEEEecCCCCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 509 NIKVLMATNRPDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 509 ~v~vi~aTN~p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
..+||++.+.|.. +++.++. ||. ..+.|..||.+.|.+|++..+....+. ++--++.||+...| +.++|..
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g 304 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRG 304 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHH
Confidence 3455655566765 5567887 874 678899999999999999988754333 23347788887764 6778888
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccccc
Q psy6523 583 VCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEE 652 (713)
Q Consensus 583 l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~ 652 (713)
++..-...+... ...++.+...+++........ ....++...+.+.+.+.- .++.+++..
T Consensus 305 ~l~~l~~~~~~~-~~~it~~~a~~~L~~~~~~~~--------~~~~i~~~~I~~~V~~~~-~i~~~~l~s 364 (440)
T PRK14088 305 AIIKLLVYKETT-GEEVDLKEAILLLKDFIKPNR--------VKAMDPIDELIEIVAKVT-GVSREEILS 364 (440)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcccc--------ccCCCCHHHHHHHHHHHc-CCcHHHHhC
Confidence 777654444433 356888888888876532111 111245555555555554 466666643
No 114
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.5e-07 Score=105.41 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. .+.+++|++||.+..|.++++. |+. .++|..++.++-.+.++..+.+.+.. ++..+..|+..
T Consensus 137 ~~n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 137 AFNSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHHHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467788888863 4467788888999999999999 884 68999999999988888877665543 34456777877
Q ss_pred CCCCCHHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTE 586 (713)
Q Consensus 572 t~g~sgadi~~l~~~ 586 (713)
+.| +..++.+++..
T Consensus 212 s~g-dlr~a~~~Lek 225 (451)
T PRK06305 212 AQG-SLRDAESLYDY 225 (451)
T ss_pred cCC-CHHHHHHHHHH
Confidence 754 44444444443
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=2.1e-07 Score=102.07 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
.++.||..|+.. ....++|++||.+..+.+++.+ |+. .+.+..|+.++...++...+.+.++. ++-.++.|+..
T Consensus 124 ~~~~ll~~le~~--~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~ 198 (367)
T PRK14970 124 AFNAFLKTLEEP--PAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK 198 (367)
T ss_pred HHHHHHHHHhCC--CCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 356666666652 3345667778888999999998 764 68999999999999998887766543 34557778877
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~ 588 (713)
+.| +.+.+.+.+....
T Consensus 199 ~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 199 ADG-ALRDALSIFDRVV 214 (367)
T ss_pred CCC-CHHHHHHHHHHHH
Confidence 654 5555555555444
No 116
>KOG2004|consensus
Probab=98.76 E-value=3.3e-08 Score=110.40 Aligned_cols=66 Identities=27% Similarity=0.351 Sum_probs=50.0
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
.+++..=+.+.+|+.|.||+.-..+-. -...+=+-|+||||.|||+++++||..+|..|+.++-+.
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrg---s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRG---SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcc---cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 345556666789999999986544321 122344668899999999999999999999999998543
No 117
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.75 E-value=8.1e-08 Score=96.63 Aligned_cols=73 Identities=30% Similarity=0.468 Sum_probs=52.6
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i 166 (713)
|....++.+++.+|.++..+..+ .|-..|.. | .|...+||+|+.|||||++++|+.++ .|+.+|.|...++
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~----~Nt~~Fl~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALI----ENTEQFLQ-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHH----HHHHHHHc-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44455678888888777544333 33344444 3 58899999999999999999999984 4677888876665
Q ss_pred ee
Q psy6523 167 VQ 168 (713)
Q Consensus 167 ~s 168 (713)
.+
T Consensus 92 ~~ 93 (249)
T PF05673_consen 92 GD 93 (249)
T ss_pred cc
Confidence 43
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=6.7e-08 Score=106.80 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=69.6
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. .+..++|.+|+.+..|-+++++ |.. .++|..++.++-.+.++..+...... ++-.++.|+..
T Consensus 143 ~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345667777643 3455667777788899999988 774 68899899888888888877655433 34456777777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHhhhcCHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIR-ARRKVASEKDFLEAV 608 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~-~~~~~v~~~d~~~a~ 608 (713)
+.| +...+.+.+..+...+-. .....|+.+++.+.+
T Consensus 218 s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 218 AQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred cCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 765 555666665554433311 112355555554443
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.74 E-value=8e-08 Score=113.09 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
..+||+||||||||.+|+++|..++.+|+.++.+++.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~ 525 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhc
Confidence 4589999999999999999999999999999876654
No 120
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=1.3e-07 Score=107.45 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=69.5
Q ss_pred EEEecCCC----CCccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 512 VLMATNRP----DTLDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 512 vi~aTN~p----~~lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
+|.|+|++ ..+++.|+. ||. ..+.|..||.+.|.+||+..+....+. ++--++.|+++..+ +.++|..++
T Consensus 413 IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL 489 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGAL 489 (617)
T ss_pred EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHH
Confidence 44577764 467899999 995 556888899999999999998776555 34446778877653 577888877
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
..-...+... .+.++.+...+.++.+..
T Consensus 490 ~rL~a~a~~~-~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 490 IRVTAFASLN-RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhhc
Confidence 7654444433 356888888877776543
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.73 E-value=4.9e-08 Score=107.45 Aligned_cols=46 Identities=39% Similarity=0.593 Sum_probs=40.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeecce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGER 174 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ges 174 (713)
+..++||+||||||||++|+++|..++++|+.+++.++. ..|+|+.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d 153 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGED 153 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccch
Confidence 457899999999999999999999999999999998876 4677763
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.72 E-value=3.5e-07 Score=106.22 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=62.1
Q ss_pred CeEEEE-ecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 509 NIKVLM-ATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 509 ~v~vi~-aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
.+++|+ ||+.++.++++|++ ||. .++++..+.++..+|++..+....+. ++--++.|++.+. .|...-+++..
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~ 397 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILAD 397 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHH
Confidence 345555 56679999999998 997 56888889999999999998876432 2223444555432 45544444444
Q ss_pred HHHHHHHHH--------hhhcCHHHHHHHHhH
Q psy6523 587 AGMFAIRAR--------RKVASEKDFLEAVNK 610 (713)
Q Consensus 587 A~~~a~~~~--------~~~v~~~d~~~a~~~ 610 (713)
+.-.+..+. ...|+.+|+++++..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 398 VYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 433332221 125677888777764
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=4e-07 Score=105.38 Aligned_cols=91 Identities=12% Similarity=0.232 Sum_probs=67.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +.+.+++|++|+.++.|++.+++ |+. .+.|..|+.++..+.|+..+.+.++. .+..+..+|.
T Consensus 133 ~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~ 207 (725)
T PRK07133 133 SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK 207 (725)
T ss_pred HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457788888885 45577888899999999999999 885 89999999999999998877765544 2333667777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~ 588 (713)
.+.| +.+++..++..++
T Consensus 208 lS~G-slR~AlslLekl~ 224 (725)
T PRK07133 208 LSSG-SLRDALSIAEQVS 224 (725)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7654 4466666655543
No 124
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.71 E-value=4.8e-07 Score=97.03 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=63.5
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHH
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAG 588 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~ 588 (713)
..+|.++|.+..+.+++.+ |+. .++++.|+.++...+++.++.+..+. ++-.+..+++.+.| +.+.+.+.++.++
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4566678888888888888 776 58999999999999999998776653 34457778877654 3444444444333
Q ss_pred HHHHHHHhhhcCHHHHHHHHh
Q psy6523 589 MFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 589 ~~a~~~~~~~v~~~d~~~a~~ 609 (713)
.. ...|+.+++..++.
T Consensus 209 ~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 AT-----GKEVTEEAVYKITG 224 (319)
T ss_pred Hc-----CCCCCHHHHHHHhC
Confidence 21 35688888877664
No 125
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.68 E-value=1.3e-07 Score=100.14 Aligned_cols=68 Identities=25% Similarity=0.464 Sum_probs=51.6
Q ss_pred hhhhhcCCccccCCCCCcHHHH--HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 88 RMIDAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 88 ~lid~i~~~r~~d~iG~~~~~~--~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
.+.+.+.+..++|++|...-+- ..+..++.. ......+||||||||||++|+.||+.++.+|..+|+-
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 3566677788899888766432 234444433 2345789999999999999999999999999999863
No 126
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-07 Score=105.65 Aligned_cols=65 Identities=26% Similarity=0.390 Sum_probs=48.7
Q ss_pred ccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 98 FDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 98 ~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
++...=|.+.+|+.|.|||.-...-..+ . ..=+.|.||||+|||+|+++||..+|..|+.++.+-
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~--k-GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKL--K-GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccC--C-CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 4455666778999999998544332221 1 123568899999999999999999999999999643
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.8e-07 Score=105.01 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~ 571 (713)
..+.||..|+.. .+.+++|++|+.++.|-+.++. |. ..++|..++.++-...++..+.+.... ++..++.|+..
T Consensus 143 a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356788888854 3456677777888999999988 76 688999999988888888777654432 34456778877
Q ss_pred CCCCCHHHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCTEA 587 (713)
Q Consensus 572 t~g~sgadi~~l~~~A 587 (713)
+.| +..++.+.+...
T Consensus 218 s~G-dlr~al~eLeKL 232 (620)
T PRK14954 218 AQG-SMRDAQSILDQV 232 (620)
T ss_pred hCC-CHHHHHHHHHHH
Confidence 765 445554544433
No 128
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=6.2e-07 Score=103.89 Aligned_cols=90 Identities=11% Similarity=0.160 Sum_probs=65.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+... ..+++|++|+.++.+.+.++. |+. .++|..++..+...+++..+.+.++. ++-.+..|++
T Consensus 135 ~a~naLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 135 AAFNALLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34667788877643 456777778888889999887 774 58899999999999888887665543 2334677888
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+.| +..++.+.+...
T Consensus 210 ~s~G-dlr~al~~LekL 225 (585)
T PRK14950 210 AATG-SMRDAENLLQQL 225 (585)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7766 777776666653
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.64 E-value=2.8e-07 Score=102.76 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=66.5
Q ss_pred eEEEEecCCCC---CccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHH
Q psy6523 510 IKVLMATNRPD---TLDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSV 583 (713)
Q Consensus 510 v~vi~aTN~p~---~lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l 583 (713)
.+|+.+++.|. .+++.|++ ||. ..+.+..|+.++|.+||+.......+. ++--++.||....+ +..+|...
T Consensus 237 ~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~ 313 (445)
T PRK12422 237 LIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHA 313 (445)
T ss_pred cEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Confidence 34444444454 57799999 996 788899999999999999988776544 33335567776553 45566665
Q ss_pred HHHHHHH-HHHH-HhhhcCHHHHHHHHhHhh
Q psy6523 584 CTEAGMF-AIRA-RRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 584 ~~~A~~~-a~~~-~~~~v~~~d~~~a~~~~~ 612 (713)
+...+.. |..+ ....++.+...+++.+..
T Consensus 314 l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 314 LTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 5555322 2222 234688888888887653
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.61 E-value=1.8e-07 Score=102.44 Aligned_cols=44 Identities=39% Similarity=0.605 Sum_probs=38.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeecc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGE 173 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ge 173 (713)
...+||+||||||||++|+++|..++++|..+++..+. .+|.|+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~ 160 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGE 160 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccc
Confidence 46899999999999999999999999999998887765 356665
No 131
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.60 E-value=2.9e-07 Score=99.30 Aligned_cols=38 Identities=45% Similarity=0.591 Sum_probs=33.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
.+-+||-||||||||++|+++|..++.+|+.|....-+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 45689999999999999999999999999999865433
No 132
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.58 E-value=5.1e-07 Score=92.60 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=63.1
Q ss_pred EEEEecCCCCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 511 KVLMATNRPDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 511 ~vi~aTN~p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
+++.+++.|.. +.|.|+. |+. ..+.+..|+.++|.++++.......+. ++--++.|+++.+| +.+.+..++
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l 210 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTL 210 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHH
Confidence 55555666666 6899999 997 899999999999999999865544333 33446778887764 667777777
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
......+..+ .+.||...+.+++
T Consensus 211 ~~l~~~~l~~-~~~it~~~~k~~l 233 (235)
T PRK08084 211 DQLDRASITA-QRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHH
Confidence 6643233222 3446666555543
No 133
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.55 E-value=1.2e-06 Score=94.03 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=70.3
Q ss_pred CCeEEEEecCCCC-CccccccCCCCCCeEEEecCCC-HHHHHHHHHHhhccC--CCc-----------------------
Q psy6523 508 GNIKVLMATNRPD-TLDPALMRPGRLDRKVEFGLPD-LEGRTHIFKIHARSM--SVE----------------------- 560 (713)
Q Consensus 508 ~~v~vi~aTN~p~-~lD~Al~RpGRfd~~i~i~~P~-~~~R~~il~~~~~~~--~~~----------------------- 560 (713)
.++++|+|.|-.+ .+.++|+. ||...+.++.|+ .+.|.+|++...... +..
T Consensus 186 ~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~ 263 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLL 263 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhc
Confidence 3577888777554 69999999 999999999997 699999998753211 000
Q ss_pred -----cccc---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 561 -----RDIR---FELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 561 -----~~~~---~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
++.- +-.++..+.--|.+---.+++-|...|+-+++..|+.+|+..+..-+
T Consensus 264 ~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 264 PKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred CCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 0111 12233344333555555677777778888889999999999887654
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3.1e-06 Score=98.12 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=60.1
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+. +...+++|++|+.++.|-+.++. |+ ..++|..++.++-...++....+.... ++..+..|++
T Consensus 136 ~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 136 AAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred HHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456788888884 44567888888899999999998 87 557888888877777777666554332 2234667777
Q ss_pred hCCCCCHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCT 585 (713)
Q Consensus 571 ~t~g~sgadi~~l~~ 585 (713)
.+.|- ..++.+++.
T Consensus 211 ~s~G~-lr~A~~lLe 224 (620)
T PRK14948 211 RSQGG-LRDAESLLD 224 (620)
T ss_pred HcCCC-HHHHHHHHH
Confidence 77653 244444433
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.54 E-value=7.8e-07 Score=105.87 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC---------CCc-ccccHHHHHHh--CCCCCHHHHHHHHHHHHH
Q psy6523 522 LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM---------SVE-RDIRFELLARL--CPNSTGAEIRSVCTEAGM 589 (713)
Q Consensus 522 lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~--t~g~sgadi~~l~~~A~~ 589 (713)
+.|.|+- |||..|.|...+.++..+|++..+.++ .+. ++--++.|++. ...|-+..|+.+++.-..
T Consensus 632 f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 632 FSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred cChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 5677776 999999999999999999999887642 121 23334556664 335666778777777665
Q ss_pred HHHH
Q psy6523 590 FAIR 593 (713)
Q Consensus 590 ~a~~ 593 (713)
.++.
T Consensus 710 ~~l~ 713 (731)
T TIGR02639 710 KPLS 713 (731)
T ss_pred HHHH
Confidence 5543
No 136
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.53 E-value=5.2e-07 Score=98.81 Aligned_cols=26 Identities=46% Similarity=0.754 Sum_probs=23.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.++|+||||||||.+|+++|..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999998764
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.53 E-value=1.6e-06 Score=100.27 Aligned_cols=101 Identities=22% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCCeEEEEecCC---CCCccccccCCCCCCe-EEEecCCCHHHHHHHHHHhhccCC-CcccccHHHHHHhCCCCCHHHHH
Q psy6523 507 RGNIKVLMATNR---PDTLDPALMRPGRLDR-KVEFGLPDLEGRTHIFKIHARSMS-VERDIRFELLARLCPNSTGAEIR 581 (713)
Q Consensus 507 ~~~v~vi~aTN~---p~~lD~Al~RpGRfd~-~i~i~~P~~~~R~~il~~~~~~~~-~~~~~~~~~la~~t~g~sgadi~ 581 (713)
..+|+|||.+|. |+.|+|.++. ||.. +|.|++++.++..+||+.-+.... +-++--+..+|+.+.. ..+|++
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDAR 976 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDIR 976 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHHH
Confidence 346889999985 7788899988 7754 488899999999999998887542 1123335666665443 335665
Q ss_pred H---HHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 582 S---VCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 582 ~---l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
. +|+.|+.. +....|+.+|+.+|+..+..
T Consensus 977 KALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 977 KALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 4 55666553 23457899999999876643
No 138
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.48 E-value=1.9e-06 Score=92.43 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=72.4
Q ss_pred CCeEEEEecCCCC-CccccccCCCCCCeEEEecCCCH-HHHHHHHHHhhcc-----------------------------
Q psy6523 508 GNIKVLMATNRPD-TLDPALMRPGRLDRKVEFGLPDL-EGRTHIFKIHARS----------------------------- 556 (713)
Q Consensus 508 ~~v~vi~aTN~p~-~lD~Al~RpGRfd~~i~i~~P~~-~~R~~il~~~~~~----------------------------- 556 (713)
.++++|+|+|-.+ .++++|+. ||..++.++.|+. ++|.+|++.....
T Consensus 173 ~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~ 250 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLL 250 (337)
T ss_pred CCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHh
Confidence 3578888888544 69999999 9999999999975 8999999874321
Q ss_pred --CCCcccc--cHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 557 --MSVERDI--RFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 557 --~~~~~~~--~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
..+++.+ -+..++..+..-|.+---.+++-|...|+.+++..|+.+|+..+..-+
T Consensus 251 ~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 251 PQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred ccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 0111000 122344444433556666778888888889999999999999887644
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.1e-06 Score=98.01 Aligned_cols=90 Identities=11% Similarity=0.147 Sum_probs=64.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLAR 570 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~ 570 (713)
...+.||..|+.. .+..++|++|+.+..|-++++. |. ..++|..++.++-...++..+.+.++. ++..+..|+.
T Consensus 136 ~a~naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~ 210 (614)
T PRK14971 136 AAFNAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ 210 (614)
T ss_pred HHHHHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788888864 3456677777778899999998 87 458999999999888888877766654 3345777888
Q ss_pred hCCCCCHHHHHHHHHHH
Q psy6523 571 LCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A 587 (713)
.+.| +.+++.+++...
T Consensus 211 ~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 211 KADG-GMRDALSIFDQV 226 (614)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7754 556665555443
No 140
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.46 E-value=2e-07 Score=87.25 Aligned_cols=36 Identities=47% Similarity=0.553 Sum_probs=31.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
+|||+||||||||.+|+.+|..++.+++.++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDT 36 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccc
Confidence 589999999999999999999999999998866533
No 141
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=3e-06 Score=86.83 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=59.9
Q ss_pred EEEEecCCCCCc---cccccCCCCC--CeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 511 KVLMATNRPDTL---DPALMRPGRL--DRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 511 ~vi~aTN~p~~l---D~Al~RpGRf--d~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
+|+.+.+.|..+ +|+|++ || -..+.++.|+.++|.+|++.......+. ++--++.|++.+.| +...+.+++
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L 205 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALL 205 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 444455567766 799999 87 5788999999999999999866543333 34457788887663 233333334
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
......+... ...+|...+.+.+.
T Consensus 206 ~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 206 DRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 4443223332 23577666665553
No 142
>PRK06620 hypothetical protein; Validated
Probab=98.42 E-value=1.5e-06 Score=87.70 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=64.3
Q ss_pred CCeEEEEecCCCCC--ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 508 GNIKVLMATNRPDT--LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 508 ~~v~vi~aTN~p~~--lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
++.++|+++..|.. + |+|+. |+. ..+.+..||.+.+.++++.......+. ++--++.|+++.. =+.+.+..
T Consensus 113 g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~-~d~r~l~~ 188 (214)
T PRK06620 113 QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLP-REYSKIIE 188 (214)
T ss_pred CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcc-CCHHHHHH
Confidence 45678888877765 6 78998 986 469999999999999999887654443 3444677887765 35666666
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 583 VCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 583 l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
++......+.. ....||...+.+++
T Consensus 189 ~l~~l~~~~~~-~~~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFALI-SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHh
Confidence 66654322322 22456666555543
No 143
>PHA02244 ATPase-like protein
Probab=98.42 E-value=1.9e-06 Score=92.05 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
....|||+||||||||++|+++|..++.+|+.++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3457999999999999999999999999999987
No 144
>PRK05642 DNA replication initiation factor; Validated
Probab=98.41 E-value=2.8e-06 Score=87.07 Aligned_cols=97 Identities=14% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCeEEEEecCCCCCc---cccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHH
Q psy6523 508 GNIKVLMATNRPDTL---DPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIR 581 (713)
Q Consensus 508 ~~v~vi~aTN~p~~l---D~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~ 581 (713)
++.++|+++..|..+ .|.|+. ||. ..+.+..|+.++|.+|++.......+. ++.-++.|+++.+ -+++.+.
T Consensus 130 g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~ 206 (234)
T PRK05642 130 GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGT-RSMSALF 206 (234)
T ss_pred CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHH
Confidence 456777777667544 688998 985 677789999999999999655544332 3344667777665 4667777
Q ss_pred HHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 582 SVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 582 ~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.++..-...++.. .+.||..-+.+++
T Consensus 207 ~~l~~l~~~~l~~-~~~it~~~~~~~L 232 (234)
T PRK05642 207 DLLERLDQASLQA-QRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHHHHHc-CCcCCHHHHHHHh
Confidence 7666554333332 2446655544443
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.41 E-value=4.8e-06 Score=93.30 Aligned_cols=126 Identities=13% Similarity=0.284 Sum_probs=82.7
Q ss_pred EEEecCC-CCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCC--c-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 512 VLMATNR-PDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSV--E-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 512 vi~aTN~-p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~--~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
+|.|+|+ |.. +++.|+. ||. ..+.+..|+.++|.+||+..+....+ . ++--+..||..+.| +.+.|..
T Consensus 242 iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~g 318 (450)
T PRK14087 242 LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKG 318 (450)
T ss_pred EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHH
Confidence 4555554 433 5788888 885 67778889999999999999876442 1 23346678877765 7888999
Q ss_pred HHHHHHHHHHHHH-hhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCccccc
Q psy6523 583 VCTEAGMFAIRAR-RKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIE 651 (713)
Q Consensus 583 l~~~A~~~a~~~~-~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~ 651 (713)
++......+.... ...++.+.+.+++.+..... ...++...+.+++.+.-. ++.+|+.
T Consensus 319 aL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~----------~~~~t~~~I~~~Va~~~~-i~~~dl~ 377 (450)
T PRK14087 319 SVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSK----------LGILNVKKIKEVVSEKYG-ISVNAID 377 (450)
T ss_pred HHHHHHHHHhcccCCCCCCHHHHHHHHhhccccc----------cCCCCHHHHHHHHHHHcC-CCHHHHh
Confidence 9988876665542 25789888888887642110 113455555555554432 5555553
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.40 E-value=2.6e-06 Score=99.56 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=68.9
Q ss_pred CCeEEEEecCCC-CCccccccCCCCCCeEEEecCCC-HHHHHHHHHHhhcc-----------------------------
Q psy6523 508 GNIKVLMATNRP-DTLDPALMRPGRLDRKVEFGLPD-LEGRTHIFKIHARS----------------------------- 556 (713)
Q Consensus 508 ~~v~vi~aTN~p-~~lD~Al~RpGRfd~~i~i~~P~-~~~R~~il~~~~~~----------------------------- 556 (713)
.++.+|+|+|.. ..+.++|+. ||+.+|.++.|. .++|.+|++..+..
T Consensus 168 ~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~ 245 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLL 245 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 357889999843 368899999 999999999884 57888887653220
Q ss_pred --CCCcccccHHHHHHhCC--CC-CHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 557 --MSVERDIRFELLARLCP--NS-TGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 557 --~~~~~~~~~~~la~~t~--g~-sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
..++ +..+..|+..+. |. +..-...+++-|.-.|.-+++..|+.+|+..|+.-+.
T Consensus 246 ~~V~is-~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 246 PSVRIS-DSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred CCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 0111 111233333322 44 3444455777787788888899999999999987554
No 147
>KOG0989|consensus
Probab=98.39 E-value=1.7e-06 Score=88.67 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=50.7
Q ss_pred HhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCC
Q psy6523 495 ETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCP 573 (713)
Q Consensus 495 ~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~ 573 (713)
+.|..-||.. ...+.+|.-||+++.|..-+.. |..+..+=++++ +.....|+....+-.++ ++--++.|++.++
T Consensus 147 ~aLrr~mE~~--s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d-~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~ 221 (346)
T KOG0989|consen 147 AALRRTMEDF--SRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKD-EDIVDRLEKIASKEGVDIDDDALKLIAKISD 221 (346)
T ss_pred HHHHHHHhcc--ccceEEEEEcCChhhCChHHHh--hHHHhcCCCcch-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 4445556653 3467889999999999999999 887655444554 44455556555555544 3334667777554
Q ss_pred CCCHHHHHH
Q psy6523 574 NSTGAEIRS 582 (713)
Q Consensus 574 g~sgadi~~ 582 (713)
.||+.
T Consensus 222 ----GdLR~ 226 (346)
T KOG0989|consen 222 ----GDLRR 226 (346)
T ss_pred ----CcHHH
Confidence 45554
No 148
>KOG1942|consensus
Probab=98.34 E-value=4.6e-06 Score=84.52 Aligned_cols=58 Identities=34% Similarity=0.533 Sum_probs=47.4
Q ss_pred HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC--ceeEEeecccceeeeecce
Q psy6523 110 RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD--ACFIRVIGSELVQKYVGER 174 (713)
Q Consensus 110 ~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~--~~~~~V~~~~i~s~~~Ges 174 (713)
-.+.++++... ...|++||-||||||||.||-||+.|+| +||..+.+++..|.-+-.+
T Consensus 51 giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKT 110 (456)
T KOG1942|consen 51 GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKT 110 (456)
T ss_pred hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHH
Confidence 46677776544 3478999999999999999999999986 8899999999887655544
No 149
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.33 E-value=6.3e-07 Score=97.04 Aligned_cols=45 Identities=42% Similarity=0.727 Sum_probs=42.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeecc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGE 173 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ge 173 (713)
+|+++||+||||||||++|+++|..++++|+.+++.++. .+|+|.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 579999999999999999999999999999999999888 489984
No 150
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.32 E-value=4.6e-06 Score=82.44 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhC
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLC 572 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t 572 (713)
..+.||..|+.. ....++|.+||.++.|++++++ |+ ..+.+..|+.++..++++.. .++ +..+..++..+
T Consensus 112 ~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~ 181 (188)
T TIGR00678 112 AANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALA 181 (188)
T ss_pred HHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHc
Confidence 456688888763 3456677778888999999999 87 48999999999999988876 233 23456666666
Q ss_pred CC
Q psy6523 573 PN 574 (713)
Q Consensus 573 ~g 574 (713)
.|
T Consensus 182 ~g 183 (188)
T TIGR00678 182 GG 183 (188)
T ss_pred CC
Confidence 54
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.32 E-value=4.5e-06 Score=100.89 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCeEEEEecCCCCC-------------------------ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-----
Q psy6523 508 GNIKVLMATNRPDT-------------------------LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM----- 557 (713)
Q Consensus 508 ~~v~vi~aTN~p~~-------------------------lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~----- 557 (713)
.+.+||+|||.... +.|.|+- |||..+.|.+++.+...+|+...+..+
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 35788999998322 3366776 999999999999999999998877532
Q ss_pred ----CCc-ccccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHH
Q psy6523 558 ----SVE-RDIRFELLARLCP--NSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 558 ----~~~-~~~~~~~la~~t~--g~sgadi~~l~~~A~~~a~~~ 594 (713)
.+. ++--++.|++..- .+....|+.++++....++.+
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 111 2223455666522 566788999888887766643
No 152
>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].
Probab=98.31 E-value=1.3e-06 Score=86.28 Aligned_cols=115 Identities=21% Similarity=0.474 Sum_probs=88.2
Q ss_pred cCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE-EEEccccC-CcccccceEEEEeeEEeeCCCCCcCC
Q psy6523 203 NEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI-VVISEHNR-ATVYETQIETRRVVKVLTHPKYNAQG 280 (713)
Q Consensus 203 ~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v-v~ig~~~~-~~~~d~~~~~~~v~~ii~h~~~~~~~ 280 (713)
-.|||.+.+.-.+.+.|+|.||++.|+|++-.|+.+.....+++ +++|-... ...-++.-+.++|..+-.-
T Consensus 14 y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V------- 86 (267)
T PF09342_consen 14 YHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDV------- 86 (267)
T ss_pred ccCcceeeEEEcCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeec-------
Confidence 46999999999999999999999999999999999988877764 55665543 3333455566666654332
Q ss_pred CCCCccceEEEecCCCCCCCCCcccccCCCC-CCccCCCceEEEeecc
Q psy6523 281 AKSHDHDIALLKLDTPLEFKPTVSPVCLPQL-GEKFTQRTGTVVGWGR 327 (713)
Q Consensus 281 ~~~~~~diall~L~~p~~~~~~i~~icl~~~-~~~~~~~~~~v~GwG~ 327 (713)
...++.|+.|.+|+.|+.+++|.++|.. .+......|..+|-.+
T Consensus 87 ---~~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~ 131 (267)
T PF09342_consen 87 ---PESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD 131 (267)
T ss_pred ---cccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence 2467999999999999999999999963 3334445677777655
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.30 E-value=7.4e-06 Score=98.49 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=46.3
Q ss_pred ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC--------CC--c-ccccHHHHHHhCCC--CCHHHHHHHHHHHH
Q psy6523 522 LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM--------SV--E-RDIRFELLARLCPN--STGAEIRSVCTEAG 588 (713)
Q Consensus 522 lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~--------~~--~-~~~~~~~la~~t~g--~sgadi~~l~~~A~ 588 (713)
+.|+|+. |+| .|.|...+.++..+|++..+..+ ++ . ++--++.|++...+ |-+..|+.+++.-.
T Consensus 751 f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 751 FKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred ccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 5577777 998 88899889999999998877542 22 1 22234567766532 45677777777665
Q ss_pred HHHHH
Q psy6523 589 MFAIR 593 (713)
Q Consensus 589 ~~a~~ 593 (713)
..++.
T Consensus 828 ~~~la 832 (852)
T TIGR03345 828 LPELS 832 (852)
T ss_pred HHHHH
Confidence 55543
No 154
>KOG2028|consensus
Probab=98.30 E-value=6.9e-06 Score=85.67 Aligned_cols=100 Identities=23% Similarity=0.302 Sum_probs=65.9
Q ss_pred CCeEEEEecC-CC-CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhc----------cCCCc----ccccHHHHHHh
Q psy6523 508 GNIKVLMATN-RP-DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHAR----------SMSVE----RDIRFELLARL 571 (713)
Q Consensus 508 ~~v~vi~aTN-~p-~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~----------~~~~~----~~~~~~~la~~ 571 (713)
+.|++|+||. .| -.|-.||+. |. +++.+..-..+.-..||..-.. .++.. ++.-++.|+..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 4578888664 33 578889998 76 3455555667777777776332 12211 23346788999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hhhcCHHHHHHHHhH
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRAR---RKVASEKDFLEAVNK 610 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~---~~~v~~~d~~~a~~~ 610 (713)
++|=.-+-|.+|--.+.|.+.|.+ +..++.+|+.+++.+
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 998877777777666666666654 347788888888764
No 155
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.23 E-value=5.9e-06 Score=76.75 Aligned_cols=40 Identities=55% Similarity=0.927 Sum_probs=33.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
..+.++++||||||||++++.+++.. +.+++.++..+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLE 60 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhh
Confidence 45689999999999999999999988 78888877665544
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.22 E-value=3.1e-05 Score=86.71 Aligned_cols=98 Identities=18% Similarity=0.293 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRF 565 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 565 (713)
|=-.+..+|.||..++ ++..+|++|.||..|+.|++-++. |.. ++.|..-+.++-...|+..+.+-.+. ++--+
T Consensus 129 HMLS~~afNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL 203 (515)
T COG2812 129 HMLSKQAFNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDAL 203 (515)
T ss_pred HhhhHHHHHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHH
Confidence 3345688999999998 567789999999999999999997 653 34566667778888888888877665 34456
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHH
Q psy6523 566 ELLARLCPNSTGAEIRSVCTEAGMF 590 (713)
Q Consensus 566 ~~la~~t~g~sgadi~~l~~~A~~~ 590 (713)
..+|+..+| |.+|...+...|...
T Consensus 204 ~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 204 SLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 777877776 567777777776544
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.2e-05 Score=87.13 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=57.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
...|.||..|+. +..++++|..|+.|+.+.|.++. |+ ..+.++.|+.++-.++|+.......++ +..+..+++.
T Consensus 156 ~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~ 229 (351)
T PRK09112 156 NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQR 229 (351)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHH
Confidence 446778888886 33456777778889999999988 98 699999999999999998743322222 2235567776
Q ss_pred CCCCCHH
Q psy6523 572 CPNSTGA 578 (713)
Q Consensus 572 t~g~sga 578 (713)
+.|--..
T Consensus 230 s~G~pr~ 236 (351)
T PRK09112 230 SKGSVRK 236 (351)
T ss_pred cCCCHHH
Confidence 6654443
No 158
>PRK09087 hypothetical protein; Validated
Probab=98.19 E-value=7.9e-06 Score=83.15 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred CeEEEEecCCCCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHH
Q psy6523 509 NIKVLMATNRPDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRS 582 (713)
Q Consensus 509 ~v~vi~aTN~p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~ 582 (713)
+.+||+++..|.. ..|.|+. ||. ..+.+..|+.+.|.+|++..+....+. ++--++.|+++..| +-+.+..
T Consensus 118 ~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~ 194 (226)
T PRK09087 118 TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQT 194 (226)
T ss_pred CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHH
Confidence 4466666665553 3688998 997 889999999999999999998876554 34457788887762 3334444
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 583 VCTEAGMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 583 l~~~A~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
++..-...+... ...+|...+.++++.
T Consensus 195 ~l~~L~~~~~~~-~~~it~~~~~~~l~~ 221 (226)
T PRK09087 195 IVDRLDRLALER-KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHh
Confidence 333443333332 345777777777654
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.19 E-value=2e-05 Score=87.22 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=64.8
Q ss_pred eEEEEecCCCC---CccccccCCCCCCeEEEecCCC-HHHHHHHHHHhhcc--CCCc--cccc-----------------
Q psy6523 510 IKVLMATNRPD---TLDPALMRPGRLDRKVEFGLPD-LEGRTHIFKIHARS--MSVE--RDIR----------------- 564 (713)
Q Consensus 510 v~vi~aTN~p~---~lD~Al~RpGRfd~~i~i~~P~-~~~R~~il~~~~~~--~~~~--~~~~----------------- 564 (713)
.++++|||... ...+|+.- ||-.+|.+++|+ .++-.+|+...... .+.. .-+.
T Consensus 148 rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~ 225 (498)
T PRK13531 148 RLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLP 225 (498)
T ss_pred cEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCC
Confidence 46677777432 13348998 998899999996 46667777653221 1110 0011
Q ss_pred ------HHHHHHh---CC---CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 565 ------FELLARL---CP---NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 565 ------~~~la~~---t~---g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
+-.|... +. ..|++--.++++-|...|.-.++..|+.+|+. .+..+.+
T Consensus 226 d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~ 285 (498)
T PRK13531 226 DHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLW 285 (498)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhc
Confidence 1123321 22 37888888888999889999999999999998 5554433
No 160
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.17 E-value=6.5e-05 Score=85.77 Aligned_cols=101 Identities=21% Similarity=0.123 Sum_probs=71.6
Q ss_pred CeEEEEecCCCC-------------CccccccCCCCCCeEEEe-cCCCHHHHHHHHHHhhccCC---------Cc-----
Q psy6523 509 NIKVLMATNRPD-------------TLDPALMRPGRLDRKVEF-GLPDLEGRTHIFKIHARSMS---------VE----- 560 (713)
Q Consensus 509 ~v~vi~aTN~p~-------------~lD~Al~RpGRfd~~i~i-~~P~~~~R~~il~~~~~~~~---------~~----- 560 (713)
+..||+|+|-.+ .|+++++. |||..+.+ +.|+.+...+|.+..+.... ..
T Consensus 343 ~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (509)
T smart00350 343 RCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQ 420 (509)
T ss_pred CcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCH
Confidence 467899999542 69999999 99986554 88999999999987543210 00
Q ss_pred ------------------ccccHHHHHH-----h----------CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy6523 561 ------------------RDIRFELLAR-----L----------CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607 (713)
Q Consensus 561 ------------------~~~~~~~la~-----~----------t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a 607 (713)
++...+.|.. + ..+.|.+.+.++++-|...|.-+.+..|+.+|+..|
T Consensus 421 ~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~a 500 (509)
T smart00350 421 EFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEA 500 (509)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 0000111110 1 125688899999999988888889999999999999
Q ss_pred HhHh
Q psy6523 608 VNKV 611 (713)
Q Consensus 608 ~~~~ 611 (713)
++=+
T Consensus 501 i~l~ 504 (509)
T smart00350 501 IRLL 504 (509)
T ss_pred HHHH
Confidence 8744
No 161
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.17 E-value=7.9e-05 Score=77.83 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=69.2
Q ss_pred cccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-----ccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Q psy6523 525 ALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-----RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 599 (713)
Q Consensus 525 Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v 599 (713)
.+.+ |+...++++..+.++-.+++...+...+.. .+-.++.|++.|.|+... |..+|..|...|..++.+.|
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREI 254 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCC
Confidence 3556 888899999999999999999888644321 234578889999999655 99999999999999999999
Q ss_pred CHHHHHHHHhHh
Q psy6523 600 SEKDFLEAVNKV 611 (713)
Q Consensus 600 ~~~d~~~a~~~~ 611 (713)
+.+++..++..+
T Consensus 255 ~~~~v~~~~~~~ 266 (269)
T TIGR03015 255 GGEEVREVIAEI 266 (269)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 162
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.14 E-value=3e-05 Score=89.74 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=70.1
Q ss_pred CeEEEEecCCCC---CccccccCCCCCCeEEEecC-CCHHHHHHHHHHhhccC-------------------------CC
Q psy6523 509 NIKVLMATNRPD---TLDPALMRPGRLDRKVEFGL-PDLEGRTHIFKIHARSM-------------------------SV 559 (713)
Q Consensus 509 ~v~vi~aTN~p~---~lD~Al~RpGRfd~~i~i~~-P~~~~R~~il~~~~~~~-------------------------~~ 559 (713)
++.||+|+|..+ .|+++|+. ||+.+|.+.. |+..+|.+|++..+... .+
T Consensus 127 ~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i 204 (589)
T TIGR02031 127 KFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI 204 (589)
T ss_pred ceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC
Confidence 578888888765 79999999 9999988876 47788999998765221 11
Q ss_pred cccccHHHHHHhC--CCCC-HHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 560 ERDIRFELLARLC--PNST-GAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 560 ~~~~~~~~la~~t--~g~s-gadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
+ +..+..|+..+ .|.+ ..---.+++-|.-.|.-+++..|+.+|+..|+.-+.
T Consensus 205 ~-~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 205 S-AEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred C-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 1 11223333322 2444 333345667777788888999999999999997553
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.6e-05 Score=84.76 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=71.6
Q ss_pred CCCeEEEEecCCC---CCccccccCCCCC-CeEEEecCCCHHHHHHHHHHhhccC----CCcccccHHHHHHh---CCCC
Q psy6523 507 RGNIKVLMATNRP---DTLDPALMRPGRL-DRKVEFGLPDLEGRTHIFKIHARSM----SVERDIRFELLARL---CPNS 575 (713)
Q Consensus 507 ~~~v~vi~aTN~p---~~lD~Al~RpGRf-d~~i~i~~P~~~~R~~il~~~~~~~----~~~~~~~~~~la~~---t~g~ 575 (713)
..+|.+|+.+|.. +.+||-+.. || ..+|.|++=+.++-..|++.-.... .++ +--++-+|.. ..|
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~-~~vl~lia~~~a~~~G- 229 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVID-DDVLKLIAALVAAESG- 229 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcC-ccHHHHHHHHHHHcCc-
Confidence 3468899999976 588998887 66 4558888889999999998776532 222 2223333333 333
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 576 TGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 576 sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
+..---.+|+.|+..|-+++...++.+++..|....
T Consensus 230 DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 230 DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 333334589999999999999999999999995544
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.12 E-value=2.7e-05 Score=94.00 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=43.7
Q ss_pred ccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-------C--Cc-ccccHHHHHHhC--CCCCHHHHHHHHHHHHHHH
Q psy6523 524 PALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM-------S--VE-RDIRFELLARLC--PNSTGAEIRSVCTEAGMFA 591 (713)
Q Consensus 524 ~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~-------~--~~-~~~~~~~la~~t--~g~sgadi~~l~~~A~~~a 591 (713)
|.|+- |+|..|.|...+.++..+|++..+..+ . +. ++--.+.|++.. ..|-++.|+.+++.-...+
T Consensus 704 pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~ 781 (821)
T CHL00095 704 PEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDP 781 (821)
T ss_pred HHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 56666 999999999999999999998887643 1 11 122244566542 1344566776666655444
Q ss_pred H
Q psy6523 592 I 592 (713)
Q Consensus 592 ~ 592 (713)
+
T Consensus 782 l 782 (821)
T CHL00095 782 L 782 (821)
T ss_pred H
Confidence 4
No 165
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.11 E-value=1.2e-05 Score=93.33 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=68.7
Q ss_pred CeEEEEecCCC--CCccccccCCCCCC---eEEEecC--C-CHHHHHHHHHHhhc---cCCCcccccH---HHHH----H
Q psy6523 509 NIKVLMATNRP--DTLDPALMRPGRLD---RKVEFGL--P-DLEGRTHIFKIHAR---SMSVERDIRF---ELLA----R 570 (713)
Q Consensus 509 ~v~vi~aTN~p--~~lD~Al~RpGRfd---~~i~i~~--P-~~~~R~~il~~~~~---~~~~~~~~~~---~~la----~ 570 (713)
++.||+++|.. ..+||+|+. ||+ .+++|+. | +.+.|.++.+...+ +......++- ..|. +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889999974 689999999 999 6666643 5 45666666554432 2211112332 2222 1
Q ss_pred hCC-----CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 571 LCP-----NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 571 ~t~-----g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
.+. -.+.++|..++++|...|..++...|+.+|+++|++...
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 111 245799999999998778777778999999999987543
No 166
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=5.2e-05 Score=81.30 Aligned_cols=78 Identities=6% Similarity=0.107 Sum_probs=55.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
..-|.||..|+. +.+++++|.+|+.|+.|-|.++. |. ..++|..|+.++-...++...... ++..+..++..
T Consensus 108 ~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~ 179 (313)
T PRK05564 108 QAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAF 179 (313)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHH
Confidence 356788888884 45667777788889999999998 77 589999999988877776554322 12335566666
Q ss_pred CCCCCH
Q psy6523 572 CPNSTG 577 (713)
Q Consensus 572 t~g~sg 577 (713)
+.|-.+
T Consensus 180 ~~g~~~ 185 (313)
T PRK05564 180 SDGIPG 185 (313)
T ss_pred cCCCHH
Confidence 666443
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.5e-05 Score=90.73 Aligned_cols=42 Identities=38% Similarity=0.512 Sum_probs=35.9
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC---ceeEEeecccceeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD---ACFIRVIGSELVQKY 170 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~---~~~~~V~~~~i~s~~ 170 (713)
|-..+||-||.|+|||.||++||..+. -+++.++.+|++.+.
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 334577789999999999999999887 899999999888654
No 168
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.07 E-value=3.9e-06 Score=91.06 Aligned_cols=44 Identities=43% Similarity=0.767 Sum_probs=41.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee-eeecc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGE 173 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s-~~~Ge 173 (713)
|+++||+||||||||++|++||..++++|+.++.+++.. +|+|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 689999999999999999999999999999999998885 79995
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=9.7e-05 Score=80.47 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=56.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
...|.||..++. +..++++|.+|+.++.+.|.++. |. ..|.|+.|+.++-.+++....... .+..+..++..
T Consensus 156 ~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~ 227 (365)
T PRK07471 156 NAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAAL 227 (365)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHH
Confidence 567788888884 34567888899999999999888 76 678999999999998888754221 12223566766
Q ss_pred CCCCCH
Q psy6523 572 CPNSTG 577 (713)
Q Consensus 572 t~g~sg 577 (713)
+.|--+
T Consensus 228 s~Gsp~ 233 (365)
T PRK07471 228 AEGSVG 233 (365)
T ss_pred cCCCHH
Confidence 766544
No 170
>KOG0728|consensus
Probab=98.05 E-value=1.1e-06 Score=87.12 Aligned_cols=82 Identities=39% Similarity=0.708 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhccc
Q psy6523 632 KQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPL 711 (713)
Q Consensus 632 ~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl 711 (713)
|--.+.+.++.+++.-.++....++.+..++|....-+|.+++|....+.+..+|+.||+.||||+...+|++|.|++|+
T Consensus 88 hpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPv 167 (404)
T KOG0728|consen 88 HPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPV 167 (404)
T ss_pred cCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccc
Confidence 33345667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy6523 712 LH 713 (713)
Q Consensus 712 ~~ 713 (713)
||
T Consensus 168 KH 169 (404)
T KOG0728|consen 168 KH 169 (404)
T ss_pred cC
Confidence 98
No 171
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=1.8e-05 Score=85.11 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=50.5
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIH 553 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~ 553 (713)
..-|.||+.|+ ++.+++++|.+|++|+.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 147 ~AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 147 AAANALLKTLE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 56788999999 567789999999999999999999 99 78999999999998888764
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.00 E-value=4e-05 Score=92.52 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=44.6
Q ss_pred ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-------CCccccc---HHHHHHhCCCCC----HHHHHHHHHHH
Q psy6523 522 LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM-------SVERDIR---FELLARLCPNST----GAEIRSVCTEA 587 (713)
Q Consensus 522 lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~-------~~~~~~~---~~~la~~t~g~s----gadi~~l~~~A 587 (713)
+.|+|+. |+|..+.|.+++.+...+|++.++..+ .+.-.++ ++.|++ .||+ ...|+.+++.-
T Consensus 749 f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 749 FRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred ccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHH
Confidence 4578888 999999999999999999998887653 1111122 333443 2454 45777777666
Q ss_pred HHHHH
Q psy6523 588 GMFAI 592 (713)
Q Consensus 588 ~~~a~ 592 (713)
...++
T Consensus 825 i~~~l 829 (857)
T PRK10865 825 IENPL 829 (857)
T ss_pred HHHHH
Confidence 55544
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=2.9e-05 Score=83.40 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=58.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
...|.||+.|+. +.+++++|.+|+.|+.|.|.++. |... +.|+.|+.++-.+.|+..... ..+.+...++..
T Consensus 121 ~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~l 192 (328)
T PRK05707 121 NAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELLTL 192 (328)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHH
Confidence 568889999985 45678999999999999999999 9866 899999998888877754321 123334556667
Q ss_pred CCCCCH
Q psy6523 572 CPNSTG 577 (713)
Q Consensus 572 t~g~sg 577 (713)
+.|--+
T Consensus 193 a~Gsp~ 198 (328)
T PRK05707 193 AGGSPL 198 (328)
T ss_pred cCCCHH
Confidence 776544
No 174
>KOG2680|consensus
Probab=97.97 E-value=2.8e-05 Score=79.26 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=68.8
Q ss_pred EEEEecCC------------CCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCH
Q psy6523 511 KVLMATNR------------PDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTG 577 (713)
Q Consensus 511 ~vi~aTN~------------p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sg 577 (713)
++|.|||| |.-||-.|+- |. ..|...+-+.++-++||+.-+..-.+. .+-.++.|.+.....|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 56777775 5566666665 43 223333347888999999887655443 22234455555555566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 578 AEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 578 adi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
.---.|+..|.+.|.+++...+..+|+..++.-+..
T Consensus 396 RYai~Lit~a~~~~~krk~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRKGKVVEVDDIERVYRLFLD 431 (454)
T ss_pred HHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHHhh
Confidence 666778899999999999999999999999876543
No 175
>KOG0726|consensus
Probab=97.95 E-value=5.1e-06 Score=84.21 Aligned_cols=67 Identities=58% Similarity=0.986 Sum_probs=62.4
Q ss_pred ccccCCCCcceeeecchhhhHhhhcCchhh--------------------hhhcCCccccCCCCCcHHHHHHHHHHHhCc
Q psy6523 60 GAVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDDGAGGDNEVQRTMLELINQP 119 (713)
Q Consensus 60 ~aia~~~~~~~i~~~~s~li~~~~ge~~~l--------------------id~i~~~r~~d~iG~~~~~~~~i~~~l~~~ 119 (713)
+|+|+++.++|++++||+++++|.|+++++ ||++++.|++...|+.++++|.+.++|++-
T Consensus 237 KAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 237 KAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316 (440)
T ss_pred HHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999998 699999999999999999999999999999
Q ss_pred ccccccC
Q psy6523 120 EKFVNLG 126 (713)
Q Consensus 120 ~~~~~~g 126 (713)
+.|..-|
T Consensus 317 dGFdsrg 323 (440)
T KOG0726|consen 317 DGFDSRG 323 (440)
T ss_pred cCccccC
Confidence 9887743
No 176
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.92 E-value=6.8e-06 Score=87.10 Aligned_cols=59 Identities=31% Similarity=0.518 Sum_probs=44.5
Q ss_pred HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC--ceeEEeecccceeeeeccee
Q psy6523 110 RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD--ACFIRVIGSELVQKYVGERV 175 (713)
Q Consensus 110 ~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~--~~~~~V~~~~i~s~~~Ges~ 175 (713)
-.+.++++... -..|++||.||||||||.||-|+|.++| .||..++++|+.|.-...+|
T Consensus 37 giiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE 97 (398)
T PF06068_consen 37 GIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE 97 (398)
T ss_dssp HHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH
T ss_pred HHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH
Confidence 35667776644 3468999999999999999999999998 99999999999987666654
No 177
>KOG1969|consensus
Probab=97.90 E-value=5.7e-05 Score=85.47 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=55.8
Q ss_pred EEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy6523 512 VLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 591 (713)
Q Consensus 512 vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a 591 (713)
||+-.| +..-|||+----|-..|+|..|....-.+=|+..+.+-.+. +|...|...|+ ++..||++.++.-...+
T Consensus 441 IICICN--dLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa 515 (877)
T KOG1969|consen 441 IICICN--DLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLA 515 (877)
T ss_pred EEEEec--CccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 566666 55678887433799999999999888888888777655543 34444554444 55689999999887777
Q ss_pred HHH
Q psy6523 592 IRA 594 (713)
Q Consensus 592 ~~~ 594 (713)
.+.
T Consensus 516 ~~~ 518 (877)
T KOG1969|consen 516 SNV 518 (877)
T ss_pred Hhc
Confidence 654
No 178
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.90 E-value=8.2e-05 Score=74.01 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=46.1
Q ss_pred CCCeEEEEecCCCCCcccccc-C-------------------CCCCCeEEEecCCCHHHHHHHHHHhhccCCCc
Q psy6523 507 RGNIKVLMATNRPDTLDPALM-R-------------------PGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE 560 (713)
Q Consensus 507 ~~~v~vi~aTN~p~~lD~Al~-R-------------------pGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~ 560 (713)
..+|++-+|+||-..|+.-+. + +.||-..+.|..|++++-.+|+..|.+...++
T Consensus 172 P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 172 PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 467999999999988885443 2 45899999999999999999999999988876
No 179
>KOG0727|consensus
Probab=97.86 E-value=1.9e-05 Score=78.51 Aligned_cols=92 Identities=48% Similarity=0.743 Sum_probs=76.0
Q ss_pred HHhhhccCccccccchhhhhhhhcccCcchhHHHHhhhhhhHhhhccccccCCCCcceeeecchhhhHhhhcCchhh---
Q psy6523 13 TFNNISVKPLDIFNGHKNIARGAVANRTDACFIRVIGSELVQKYVGEGAVANRTDACFIRVIGSELVQKYVGEGARM--- 89 (713)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aia~~~~~~~i~~~~s~li~~~~ge~~~l--- 89 (713)
.+++|-.||+ ||-+.+|--||--+-+ .+|+|+.+.+.||+++||++++||.|+++++
T Consensus 180 ly~qigidpp----------rgvllygppg~gktml----------~kava~~t~a~firvvgsefvqkylgegprmvrd 239 (408)
T KOG0727|consen 180 LYKQIGIDPP----------RGVLLYGPPGTGKTML----------AKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRD 239 (408)
T ss_pred HHHHhCCCCC----------cceEEeCCCCCcHHHH----------HHHHhhccchheeeeccHHHHHHHhccCcHHHHH
Confidence 4556666654 5666777766654332 2267888999999999999999999999998
Q ss_pred -----------------hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccc
Q psy6523 90 -----------------IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVN 124 (713)
Q Consensus 90 -----------------id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~ 124 (713)
+|++.+.||+...|.++++++.+.++|++.+.|.+
T Consensus 240 vfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 240 VFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred HHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 68999999999999999999999999999998876
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=3.7e-05 Score=82.84 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~ 552 (713)
...|.||+.|+. +.+++++|.+|+.+..|-|.++. |. ..++|..|+.++-.++|+.
T Consensus 125 ~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 125 SAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 467889999985 45677888899999999999998 76 5688888988887777764
No 181
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=6.9e-06 Score=90.37 Aligned_cols=76 Identities=36% Similarity=0.577 Sum_probs=64.7
Q ss_pred HhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 638 VVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 638 ~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+..+...+.++.+.++.++.+....+...-.+|+..+|........+.|+|+|+||||++.+|++|+++|+||++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~ 167 (398)
T PTZ00454 92 YVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTC 167 (398)
T ss_pred EEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 4445566777788888888888877777767788888888778888999999999999999999999999999975
No 182
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.80 E-value=0.00012 Score=74.25 Aligned_cols=77 Identities=29% Similarity=0.363 Sum_probs=47.9
Q ss_pred CCeEEEEecCCCCCc---cccccCCCCCCe--EEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHH
Q psy6523 508 GNIKVLMATNRPDTL---DPALMRPGRLDR--KVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIR 581 (713)
Q Consensus 508 ~~v~vi~aTN~p~~l---D~Al~RpGRfd~--~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~ 581 (713)
++.+||.+-..|..+ +|.|+. ||.. .+.+..|+.+.|.+|++.......+. ++--++.|++... -+.++|.
T Consensus 130 ~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~ 206 (219)
T PF00308_consen 130 GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELE 206 (219)
T ss_dssp TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHH
T ss_pred CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHH
Confidence 344566665666654 677777 8754 88999999999999999988776655 3333566777764 3667777
Q ss_pred HHHHHH
Q psy6523 582 SVCTEA 587 (713)
Q Consensus 582 ~l~~~A 587 (713)
.++..-
T Consensus 207 ~~l~~l 212 (219)
T PF00308_consen 207 GALNRL 212 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.76 E-value=3e-05 Score=82.98 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=46.9
Q ss_pred cc-CCCCCcHHHHHHHHHHHhCcccccccCC-CCCCcEEeeCCCCCchhHHHHHHhhccCc-------eeEEeeccccee
Q psy6523 98 FD-DGAGGDNEVQRTMLELINQPEKFVNLGI-EPPKGVLLFGPPGTGKTLCARAVANRTDA-------CFIRVIGSELVQ 168 (713)
Q Consensus 98 ~~-d~iG~~~~~~~~i~~~l~~~~~~~~~gi-~~p~gvLL~GPpGtGKT~la~alA~e~~~-------~~~~V~~~~i~s 168 (713)
|+ ++.|.++. +..+.++++.... |. ...+.++|+||||||||++|++||+.++. +++.+....+.|
T Consensus 49 F~~~~~G~~~~-i~~lv~~l~~~a~----g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 49 FDHDFFGMEEA-IERFVNYFKSAAQ----GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred cchhccCcHHH-HHHHHHHHHHHHh----cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 55 56665554 4455556544331 22 34578899999999999999999999988 999997744333
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.00021 Score=76.62 Aligned_cols=55 Identities=20% Similarity=0.412 Sum_probs=36.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFK 551 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~ 551 (713)
..-|.++..|+ .+..+..+|.+||+|+.|-|-++. |. ..+.|..|+...+....+
T Consensus 124 ~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 124 DAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 34455666666 345567899999999999998888 65 456666655554444444
No 185
>KOG0652|consensus
Probab=97.64 E-value=3.2e-05 Score=77.36 Aligned_cols=78 Identities=37% Similarity=0.667 Sum_probs=69.5
Q ss_pred HHHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 636 KFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 636 ~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
..++.+...|.++.+.++.-+++....|--.-++|++++.-.+-+.+.+.|+-+|+|||||+...|||.|||++|++|
T Consensus 116 t~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth 193 (424)
T KOG0652|consen 116 TYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTH 193 (424)
T ss_pred eeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhcccccc
Confidence 334455566788888888889999999999889999999999988889999999999999999999999999999987
No 186
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.0007 Score=72.34 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=59.1
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
..-|.||..|+.-. +.++|..|+.|+.|-|.++. |. ..+.|+.|+.++-.++|+.....-. .+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 45678888888643 34677788899999999998 87 7888999999999999887643211 12234677777
Q ss_pred CCCCCHHHHH
Q psy6523 572 CPNSTGAEIR 581 (713)
Q Consensus 572 t~g~sgadi~ 581 (713)
+.|--+.-+.
T Consensus 211 a~Gs~~~al~ 220 (314)
T PRK07399 211 AQGSPGAAIA 220 (314)
T ss_pred cCCCHHHHHH
Confidence 7776554444
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.49 E-value=0.00055 Score=77.23 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=57.0
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
+.+||.+.+ ..||+.|.+ +=..+.+++|+.++..++++.+....... ++.+++.+++.+.|+|-.|++.++..+
T Consensus 115 ~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~ 189 (489)
T CHL00195 115 KTIIIIASE--LNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKI 189 (489)
T ss_pred CEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345555543 456666665 34678999999999999998887655443 566788999999999999999998874
No 188
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00012 Score=67.08 Aligned_cols=39 Identities=36% Similarity=0.629 Sum_probs=32.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCce---eEEeeccccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDAC---FIRVIGSELVQ 168 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~---~~~V~~~~i~s 168 (713)
+..++|+||||||||++++++|..+... ++.++......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 4679999999999999999999998886 77777655443
No 189
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.45 E-value=0.0036 Score=70.71 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
..|+|.+-...+++-|.-.|--++++.|+.+|+.+|+.
T Consensus 453 ~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 453 HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34788888889999998888888889999999999986
No 190
>PRK04132 replication factor C small subunit; Provisional
Probab=97.44 E-value=0.0018 Score=77.16 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=58.9
Q ss_pred HHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhC
Q psy6523 494 VETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLC 572 (713)
Q Consensus 494 v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t 572 (713)
.+.||..|+.. .+++.+|++||.+..|.++++. |. ..+.|+.|+.++-...|+..+.+..+. ++..+..|+..+
T Consensus 647 QnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s 721 (846)
T PRK04132 647 QQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA 721 (846)
T ss_pred HHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 45566667643 4567899999999999999998 86 788999999999988888877654433 345677888877
Q ss_pred CCC
Q psy6523 573 PNS 575 (713)
Q Consensus 573 ~g~ 575 (713)
+|=
T Consensus 722 ~GD 724 (846)
T PRK04132 722 EGD 724 (846)
T ss_pred CCC
Confidence 763
No 191
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.42 E-value=9.9e-05 Score=78.50 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=35.9
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKY 170 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~ 170 (713)
..+|++||||+|||||.|+.|+|+++ |..+..+..++++..+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 56899999999999999999999987 7777878877776544
No 192
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.41 E-value=7.2e-05 Score=83.04 Aligned_cols=77 Identities=32% Similarity=0.562 Sum_probs=68.6
Q ss_pred HHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 637 FVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 637 ~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
.+..+.+.+.++.+.++..+.+....+...-.+|+.++|....+...+.|+++|+|||||++++++|+++|++|++|
T Consensus 129 ~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~ 205 (438)
T PTZ00361 129 YYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTH 205 (438)
T ss_pred EEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhC
Confidence 34556677888899999999998888888888889999999888889999999999999999999999999999875
No 193
>KOG0741|consensus
Probab=97.40 E-value=7.3e-05 Score=81.65 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=57.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeecceeecccCCCCCCCCCcccccccccccccCcCCch
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPW 207 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~ 207 (713)
.+-..|||+||||+|||.||--+|...+-||++|..++-+.++.-. .++..|...|+.+..+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEs---------------aKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSES---------------AKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHH---------------HHHHHHHHHHHHhhcCcce
Confidence 5667899999999999999999999999999999999877665321 2335677777777776666
Q ss_pred hhhhhccCc
Q psy6523 208 VVALEQAGK 216 (713)
Q Consensus 208 ~~~l~e~~~ 216 (713)
++.+|+.+.
T Consensus 601 iivvDdiEr 609 (744)
T KOG0741|consen 601 IIVVDDIER 609 (744)
T ss_pred EEEEcchhh
Confidence 666665543
No 194
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00013 Score=76.36 Aligned_cols=42 Identities=36% Similarity=0.451 Sum_probs=36.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKY 170 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~ 170 (713)
..+|++|+||||||||.||.|+|+++ +.+++.++.+++++.+
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI 157 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45689999999999999999999974 7888888888877654
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.36 E-value=0.00015 Score=74.35 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=35.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKY 170 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~ 170 (713)
..+++|+||||||||.|+.|||+++ +..++.++.+++++.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 4589999999999999999999987 7778888888877644
No 196
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.32 E-value=0.00018 Score=69.76 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++..|+|+||||||||++|+++|..++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46788999999999999999999999999888543
No 197
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.00088 Score=73.07 Aligned_cols=101 Identities=26% Similarity=0.312 Sum_probs=71.2
Q ss_pred eEEEEecCCCCCcc---ccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHH
Q psy6523 510 IKVLMATNRPDTLD---PALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSV 583 (713)
Q Consensus 510 v~vi~aTN~p~~lD---~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l 583 (713)
-+|+.+-..|..+. |-|+. ||+ ..+.+..||.+.|.+||+......++. ++.-+..+|.+.. -+.++|...
T Consensus 210 qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLega 286 (408)
T COG0593 210 QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGA 286 (408)
T ss_pred EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHH
Confidence 35666655666555 88888 986 677888899999999999976655544 3334566776654 467788877
Q ss_pred HHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 584 CTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 584 ~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
.......+...++ .+|.+.+.++++.....
T Consensus 287 L~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 287 LNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 7777666655444 78888888888776544
No 198
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.30 E-value=0.00031 Score=69.50 Aligned_cols=44 Identities=36% Similarity=0.610 Sum_probs=29.4
Q ss_pred ccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 98 FDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 98 ~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|.|++|....++....-.. | ..++|++|||||||||+|++++.-
T Consensus 2 f~dI~GQe~aKrAL~iAAa---------G---~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA---------G---GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH---------C---C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHc---------C---CCCeEEECCCCCCHHHHHHHHHHh
Confidence 6677776654443333322 2 469999999999999999999964
No 199
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00016 Score=65.72 Aligned_cols=31 Identities=32% Similarity=0.585 Sum_probs=28.0
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
|++.||||+|||++|+.||..+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988877664
No 200
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00022 Score=73.39 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=33.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQK 169 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~ 169 (713)
..+++|+||||||||.||.|||+++ |..++.++.++++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 4689999999999999999999976 566777777776653
No 201
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.29 E-value=0.0002 Score=69.54 Aligned_cols=40 Identities=40% Similarity=0.477 Sum_probs=34.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCc----eeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDA----CFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~----~~~~V~~~~i~s 168 (713)
|...+||.||+|||||.+|+++|..+.. +++.++.+++..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 4456889999999999999999999997 999999988776
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00023 Score=82.87 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=62.9
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc----------cCceeEEeecccc
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR----------TDACFIRVIGSEL 166 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e----------~~~~~~~V~~~~i 166 (713)
.++=++|-++++.+.+.-+.+.. ..+-+|.|+||.|||.++..+|.. .+..++.++.+.+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~----------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT----------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC----------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 56667898898888777666432 345678999999999999999963 2566777777777
Q ss_pred e--eeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCc
Q psy6523 167 V--QKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGK 216 (713)
Q Consensus 167 ~--s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~ 216 (713)
+ .+|.||-| .|+.+..+.....-+-|+||||++.
T Consensus 238 vAGakyRGeFE----------------eRlk~vl~ev~~~~~vILFIDEiHt 273 (786)
T COG0542 238 VAGAKYRGEFE----------------ERLKAVLKEVEKSKNVILFIDEIHT 273 (786)
T ss_pred hccccccCcHH----------------HHHHHHHHHHhcCCCeEEEEechhh
Confidence 6 56777644 3444333333333356666666644
No 203
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00019 Score=74.19 Aligned_cols=46 Identities=39% Similarity=0.605 Sum_probs=42.1
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeeccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGERV 175 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ges~ 175 (713)
..+|||.||.|||||+||+.+|..+++||---++..+. .+|+||.+
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDV 143 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDV 143 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhH
Confidence 46899999999999999999999999999999988887 78999964
No 204
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.27 E-value=0.0049 Score=69.92 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 573 PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 573 ~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
.++|.+-...+++-|.-.|--++...++.+|+.+|+.
T Consensus 461 ~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 461 LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 3578888888888887777777777888888888764
No 205
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.27 E-value=0.011 Score=61.83 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=63.4
Q ss_pred eEEEEecCC--CCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc--ccccH----HHHHHhCCCCCHHHHH
Q psy6523 510 IKVLMATNR--PDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE--RDIRF----ELLARLCPNSTGAEIR 581 (713)
Q Consensus 510 v~vi~aTN~--p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~--~~~~~----~~la~~t~g~sgadi~ 581 (713)
++.+||-.- .=.-|+-+-+ ||+-..-=....-++-..++..+-..+++. +++.- ..|-.+|+|..| +|.
T Consensus 183 iV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~ 259 (302)
T PF05621_consen 183 IVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELS 259 (302)
T ss_pred eEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHH
Confidence 555554332 2344677777 997654322223355566888888777765 33333 344567888875 789
Q ss_pred HHHHHHHHHHHHHHhhhcCHHHHHH
Q psy6523 582 SVCTEAGMFAIRARRKVASEKDFLE 606 (713)
Q Consensus 582 ~l~~~A~~~a~~~~~~~v~~~d~~~ 606 (713)
.+++.||..|++.+.+.|+.+.+..
T Consensus 260 ~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 260 RLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHhcCCceecHHHHhh
Confidence 9999999999999999999887764
No 206
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.26 E-value=0.00016 Score=65.86 Aligned_cols=31 Identities=45% Similarity=0.550 Sum_probs=23.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
|||.|+||+|||++|+++|...|..|..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 7999999999999999999999999988864
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.25 E-value=0.00027 Score=73.24 Aligned_cols=43 Identities=30% Similarity=0.525 Sum_probs=38.1
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKYV 171 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~~ 171 (713)
.+.+++||||||+|||.||-|||+++ |..++.+..+++++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 58899999999999999999999965 78899999999987653
No 208
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.19 E-value=0.00018 Score=79.37 Aligned_cols=75 Identities=40% Similarity=0.660 Sum_probs=59.1
Q ss_pred hhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 639 VDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 639 ~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
......+....+..+..+.+....+...-.+|+...|...++.+.+.|+++|+||||+++++++|++.|++|++|
T Consensus 79 ~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~ 153 (389)
T PRK03992 79 VNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKK 153 (389)
T ss_pred EeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhC
Confidence 333444556667777777666655555555667778887888999999999999999999999999999999875
No 209
>KOG0739|consensus
Probab=97.16 E-value=0.00016 Score=73.78 Aligned_cols=34 Identities=38% Similarity=0.592 Sum_probs=31.2
Q ss_pred eeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 680 MQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 680 e~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
-+..+.|||.|+||.||+..|+.|+|||.+|+|.
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKF 155 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKF 155 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccc
Confidence 4567899999999999999999999999999974
No 210
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.15 E-value=0.0027 Score=73.20 Aligned_cols=100 Identities=15% Similarity=0.060 Sum_probs=67.4
Q ss_pred CeEEEEecCCC---CCccccccCCCCCCeEEEecCCCHHHH-------HHHHH--HhhccCCCcccccHHHHHHhC--CC
Q psy6523 509 NIKVLMATNRP---DTLDPALMRPGRLDRKVEFGLPDLEGR-------THIFK--IHARSMSVERDIRFELLARLC--PN 574 (713)
Q Consensus 509 ~v~vi~aTN~p---~~lD~Al~RpGRfd~~i~i~~P~~~~R-------~~il~--~~~~~~~~~~~~~~~~la~~t--~g 574 (713)
+.++|++-|.. ..|.++++- ||+.++.++.|+..+- .+|.+ ..+.+..++ +..+..++..+ .|
T Consensus 136 ~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~g 212 (584)
T PRK13406 136 RFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALG 212 (584)
T ss_pred CcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhC
Confidence 45667753322 458999999 9999999999876432 12332 223344433 23334444322 26
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 575 S-TGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 575 ~-sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
. |..---.+++-|.-.|.-+++..|+.+|+.+|+.-+
T Consensus 213 v~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 213 IASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred CCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5 777777888888888888999999999999998754
No 211
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.13 E-value=0.0043 Score=71.12 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=43.5
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccce
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELV 167 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~ 167 (713)
.+.+++|....+++.+...-+ + ...+..||++|++||||+++|++|... .+.+|+.|++..+-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----~----a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----V----AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALP 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----H----hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCC
Confidence 345566666544433322221 1 134668999999999999999999876 45799999987664
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.10 E-value=0.00024 Score=69.60 Aligned_cols=43 Identities=37% Similarity=0.638 Sum_probs=33.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccceeee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQKY 170 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s~~ 170 (713)
...+|++|+||||||||.||.|+|++ .|..++.++.++++..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45789999999999999999999985 57888888888887654
No 213
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00042 Score=67.15 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=30.1
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
+.|++.||||+|||++|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 458999999999999999999999999998763
No 214
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0045 Score=66.12 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
...|.||+.|+. +.+++++|.+|+.++.|-|.++. |. ..+.|+.|+.++-.+.|... ..+ ..+...++..
T Consensus 128 ~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l 197 (319)
T PRK08769 128 AACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDA 197 (319)
T ss_pred HHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHH
Confidence 567889998884 55678899999999999999999 87 45678889888777777642 222 2234456777
Q ss_pred CCCCCHHHHH
Q psy6523 572 CPNSTGAEIR 581 (713)
Q Consensus 572 t~g~sgadi~ 581 (713)
+.|--+.-+.
T Consensus 198 ~~G~p~~A~~ 207 (319)
T PRK08769 198 ARGHPGLAAQ 207 (319)
T ss_pred cCCCHHHHHH
Confidence 7776654443
No 215
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.99 E-value=0.00088 Score=76.08 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=45.8
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
+|...+.+.+|.....+.+. .+...|... + .+-.+.+=+||+||||||||+.++.||+|+|..+..-..+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~-eV~~wl~~~--~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVE-EVRSWLEEM--F--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred chhcCCCCHHHhhccHHHHH-HHHHHHHHH--h--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 44555566677666554333 333333321 1 1234456678899999999999999999999988875433
No 216
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.0016 Score=69.92 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~ 552 (713)
...+.+|+.|+... .++.+|.+|+.++.+.|.+++ |. ..+.|+.|+.++-.+.|+.
T Consensus 128 ~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 128 QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 45666777777653 346678899999999999988 77 5677888998887777754
No 217
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.003 Score=67.46 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~ 552 (713)
..-|.||+.|+. +..++++|..|+.|+.|-|.++. |.. .+.|+.|+.++..+.|..
T Consensus 123 ~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 123 SASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 578899999994 66789999999999999999999 885 788999999888877764
No 218
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.0065 Score=65.06 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=55.7
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
..-|.||+.|+. +..++++|.+|+.|+.|.|.++. |. ..+.|+.|+.++-.+.|..... . .+.....++..
T Consensus 122 ~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~~~---~-~~~~~~~~~~l 192 (325)
T PRK06871 122 AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQSS---A-EISEILTALRI 192 (325)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHHhc---c-ChHHHHHHHHH
Confidence 567889999984 66788999999999999999998 76 4567888988887777765421 1 12234445555
Q ss_pred CCCCCH
Q psy6523 572 CPNSTG 577 (713)
Q Consensus 572 t~g~sg 577 (713)
+.|--+
T Consensus 193 ~~g~p~ 198 (325)
T PRK06871 193 NYGRPL 198 (325)
T ss_pred cCCCHH
Confidence 665443
No 219
>PRK08181 transposase; Validated
Probab=96.94 E-value=0.00036 Score=72.71 Aligned_cols=42 Identities=36% Similarity=0.497 Sum_probs=34.9
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccceeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQKY 170 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s~~ 170 (713)
...+++|+||||||||.||.|+|++ .|..++.++.++++..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 4578999999999999999999974 47778888887777654
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.00042 Score=74.37 Aligned_cols=41 Identities=27% Similarity=0.484 Sum_probs=35.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKY 170 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~ 170 (713)
..+++||||+|||||.||.|+|+++ |..++.++.++++..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 3889999999999999999999975 7778888888876644
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0033 Score=67.75 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=57.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
..-|.||+.|+ ++.+++++|..|++|+.|.|-++. |.. .+.|+.|+.++-.+.|... .+.+ ......++..
T Consensus 123 ~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~l 193 (334)
T PRK07993 123 AAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRL 193 (334)
T ss_pred HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHH
Confidence 56789999999 467789999999999999999999 887 4799999988877777532 2222 2234456666
Q ss_pred CCCCCHH
Q psy6523 572 CPNSTGA 578 (713)
Q Consensus 572 t~g~sga 578 (713)
+.|--+.
T Consensus 194 a~G~~~~ 200 (334)
T PRK07993 194 SAGAPGA 200 (334)
T ss_pred cCCCHHH
Confidence 7665443
No 222
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00077 Score=70.25 Aligned_cols=46 Identities=41% Similarity=0.694 Sum_probs=42.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeecce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGER 174 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ges 174 (713)
-|++||.-||.|.|||.+||-+|.-.++||++|.+..+. -+|+|..
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 489999999999999999999999999999999998887 4688863
No 223
>KOG3347|consensus
Probab=96.91 E-value=0.00064 Score=62.88 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=30.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.-.||++|-||||||+++..||..++..+|.|+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 347999999999999999999999999999876
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.91 E-value=0.00072 Score=78.28 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=50.1
Q ss_pred hhhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 89 MIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 89 lid~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
..+...+..++|++|..+.+.+ +..++.... ++..+.+-++|+||||||||++++.+|++++..++.
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~-l~~~l~~~~----~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEE-VETWLKAQV----LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHH-HHHHHHhcc----cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 3566777899999998876664 555554321 234555669999999999999999999999877655
No 225
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.86 E-value=0.00078 Score=63.84 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.|+|+||||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999988655
No 226
>PRK13947 shikimate kinase; Provisional
Probab=96.84 E-value=0.00089 Score=64.85 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=28.6
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.|+|.|+||||||++++.+|..+|++|+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997654
No 227
>PRK03839 putative kinase; Provisional
Probab=96.81 E-value=0.00085 Score=65.70 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=28.0
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
|+|.|+||+|||++++.||..++.+++.+.
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 889999999999999999999999998765
No 228
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.80 E-value=0.00087 Score=62.64 Aligned_cols=36 Identities=31% Similarity=0.636 Sum_probs=28.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccceeee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 170 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~ 170 (713)
|++.||||+|||++|+.++..++ ...|+..++....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRL 37 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHH
Confidence 68999999999999999999999 4445555554433
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.80 E-value=0.00084 Score=70.09 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=32.1
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~~~i~s 168 (713)
...+++|+||||||||.|+.|||+++ |..++.++..+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 35789999999999999999999975 56666766655543
No 230
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.79 E-value=0.0027 Score=61.48 Aligned_cols=40 Identities=40% Similarity=0.525 Sum_probs=32.3
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
.+.-||++|++||||+++|++|-+.. +.||+.|+++.+-.
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~ 63 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE 63 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc
Confidence 45679999999999999999999865 47999999987644
No 231
>PRK00625 shikimate kinase; Provisional
Probab=96.74 E-value=0.001 Score=64.68 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=29.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.|+|.|+||+|||++++.+|..++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 232
>PHA02624 large T antigen; Provisional
Probab=96.73 E-value=0.0013 Score=74.54 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
|++..+.+|||||||||||+++.+|+..++-..+.|+.|.-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ 467 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD 467 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc
Confidence 67777899999999999999999999999766777885543
No 233
>PRK06526 transposase; Provisional
Probab=96.71 E-value=0.00083 Score=69.56 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=28.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
..+.+++|+||||||||.||.+|+.++ |..++.++.+++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 456789999999999999999999764 444444444333
No 234
>PRK14532 adenylate kinase; Provisional
Probab=96.71 E-value=0.0012 Score=65.03 Aligned_cols=35 Identities=23% Similarity=0.562 Sum_probs=28.4
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
.|++.||||+|||++|+.||...|++++. ..+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHHH
Confidence 38999999999999999999999876654 444443
No 235
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.69 E-value=0.00093 Score=73.21 Aligned_cols=77 Identities=43% Similarity=0.726 Sum_probs=60.7
Q ss_pred HHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 637 FVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 637 ~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
.+....+.+.++.+..+..+.+....+...-.+|....|........+.|+++|+||||+++++++|+++|++|++|
T Consensus 68 ~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~ 144 (364)
T TIGR01242 68 FVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKH 144 (364)
T ss_pred EEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcC
Confidence 34445566777778888777777666655545566777777777788999999999999999999999999999875
No 236
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.68 E-value=0.0013 Score=64.43 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=27.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
|+++||||+|||++|+.||...|+. .++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 6899999999999999999999864 455555554
No 237
>PRK13949 shikimate kinase; Provisional
Probab=96.66 E-value=0.0013 Score=63.82 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.6
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+.|+|.||||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46899999999999999999999999988866
No 238
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.64 E-value=0.0019 Score=72.86 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=41.6
Q ss_pred cccCCCCCcHHHHHHHHHHHhCc-ccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC-ceeEEeeccc
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQP-EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD-ACFIRVIGSE 165 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~-~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~-~~~~~V~~~~ 165 (713)
-|+|..|.++.+.+.+ +++++. ..+ + ...+-++|.||||+|||+||++||.-+. .+++.+.+.+
T Consensus 74 fF~d~yGlee~ieriv-~~l~~Aa~gl---~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~ 139 (644)
T PRK15455 74 AFEEFYGMEEAIEQIV-SYFRHAAQGL---E-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANG 139 (644)
T ss_pred chhcccCcHHHHHHHH-HHHHHHHHhc---C-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCC
Confidence 4667777666555544 665322 111 1 2345678899999999999999998554 3566665543
No 239
>PRK14531 adenylate kinase; Provisional
Probab=96.62 E-value=0.0015 Score=64.18 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=26.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
+-|+++||||+|||++++.||...|++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999877655
No 240
>PRK13948 shikimate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=63.06 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVG 172 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~G 172 (713)
++++.|+|.|++|||||++++.+|..++++|+..+ .++....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 46689999999999999999999999999998655 34444334
No 241
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.56 E-value=0.0018 Score=63.98 Aligned_cols=33 Identities=36% Similarity=0.651 Sum_probs=27.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
|+++||||+|||++|+.||...|+.++.+ .+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~--~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST--GDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC--cHHH
Confidence 79999999999999999999988776554 3444
No 242
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0018 Score=60.92 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=25.8
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|-+.||||||||++|+-||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999875
No 243
>KOG0745|consensus
Probab=96.53 E-value=0.002 Score=69.27 Aligned_cols=46 Identities=43% Similarity=0.613 Sum_probs=42.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeeccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGERV 175 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ges~ 175 (713)
..+|||-||.|+|||+||+.||.-+++||.--++..+. .+|+||.+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDV 272 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDV 272 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccH
Confidence 45799999999999999999999999999999998888 78999853
No 244
>PRK09183 transposase/IS protein; Provisional
Probab=96.51 E-value=0.0018 Score=67.43 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=33.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccceee
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQK 169 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s~ 169 (713)
+....+++|+||||||||.||.+++.+ .|..+..++..+++..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 455678999999999999999999765 4666666676666543
No 245
>PRK07261 topology modulation protein; Provisional
Probab=96.51 E-value=0.0019 Score=62.74 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=27.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
|++.|+||+|||+||+.|+..++.+++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999998877653
No 246
>PRK06762 hypothetical protein; Provisional
Probab=96.50 E-value=0.0015 Score=63.08 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
|+-|++.|+||+|||++|+.++..++.+++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 456889999999999999999999866666666655544
No 247
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.47 E-value=0.0019 Score=62.94 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=31.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
.+-++|.||||+|||++|++++.+++.+++.++...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 35689999999999999999999998888776554443
No 248
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.47 E-value=0.0023 Score=60.47 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=25.0
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
++|.||||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 249
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.46 E-value=0.0021 Score=60.30 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=27.8
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
|.+.|+||||||++|+.||..++.+++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 678999999999999999999999998776
No 250
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.43 E-value=0.0023 Score=61.54 Aligned_cols=28 Identities=43% Similarity=0.644 Sum_probs=24.6
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
+++.||||||||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 251
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.42 E-value=0.048 Score=59.24 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=36.7
Q ss_pred CCCeEEEEecCC-CCCccccccCCCCCCeEEEecCC-CHHHHHHHHHHhhc
Q psy6523 507 RGNIKVLMATNR-PDTLDPALMRPGRLDRKVEFGLP-DLEGRTHIFKIHAR 555 (713)
Q Consensus 507 ~~~v~vi~aTN~-p~~lD~Al~RpGRfd~~i~i~~P-~~~~R~~il~~~~~ 555 (713)
.-++++|+|+|- -..|=|-|+- ||...|.+..| +.++|.+|.+.-+.
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 346899999994 3456666777 99999999999 66999999875543
No 252
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.42 E-value=0.0017 Score=57.97 Aligned_cols=23 Identities=35% Similarity=0.741 Sum_probs=20.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccC
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~ 155 (713)
|.||||||||||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987655
No 253
>PRK06547 hypothetical protein; Provisional
Probab=96.41 E-value=0.0025 Score=62.04 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=30.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++.-|++.||+|+|||++|+.+|+.++++++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45778999999999999999999999988877643
No 254
>PRK06217 hypothetical protein; Validated
Probab=96.40 E-value=0.0025 Score=62.58 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=28.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|++.|+||+|||++|++||..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999877654
No 255
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=96.40 E-value=0.0044 Score=65.34 Aligned_cols=131 Identities=24% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCCCCC--cccccccccccccCcCCchhhhhhccC----ceeeeeeeechhhHHhhcccccCCCCCC--ceEEEEccccC
Q psy6523 183 EGCGVP--NRMDRIVGGWTTEVNEYPWVVALEQAG----KFFCGGTLISDRYVLTAAHCVRSSKRQK--DLIVVISEHNR 254 (713)
Q Consensus 183 ~~~~~~--~~~~rI~~g~~~~~~~~P~~~~l~e~~----~~~cggslI~~r~vltaa~c~~~~~~~~--~~vv~ig~~~~ 254 (713)
..||.. ....++.+|........||.+.+...+ ...++|++|++||+||+.||+...+..= ...+.-+....
T Consensus 29 ~~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~~C~~ 108 (282)
T PF03761_consen 29 ETCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNKKCEG 108 (282)
T ss_pred HhcCCCCCCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccceeeC
Confidence 458843 233456888888899999998877432 3567999999999999999998433210 00000000000
Q ss_pred -----------Ccccc---------cceEEEEeeEEeeCCCCC-cCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC
Q psy6523 255 -----------ATVYE---------TQIETRRVVKVLTHPKYN-AQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313 (713)
Q Consensus 255 -----------~~~~d---------~~~~~~~v~~ii~h~~~~-~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~ 313 (713)
...++ .......+.+++..-..+ ........++.+++++.++ +.....|+|||....
T Consensus 109 ~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~ 186 (282)
T PF03761_consen 109 NNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSST 186 (282)
T ss_pred CCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCCcc
Confidence 00000 011123344443322221 1112344577999999999 888999999997655
Q ss_pred cc
Q psy6523 314 KF 315 (713)
Q Consensus 314 ~~ 315 (713)
.+
T Consensus 187 ~~ 188 (282)
T PF03761_consen 187 NW 188 (282)
T ss_pred cc
Confidence 43
No 256
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.36 E-value=0.0032 Score=64.11 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=28.0
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.-|+|.||||+|||++|+.||..+|++++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34999999999999999999999998777654
No 257
>PLN02200 adenylate kinase family protein
Probab=96.35 E-value=0.0033 Score=64.41 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
...|.-+++.||||+|||++|+.+|..+|++ .++.++++.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4556678999999999999999999999865 456656654
No 258
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.34 E-value=0.0049 Score=56.09 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=27.7
Q ss_pred HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 110 RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 110 ~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+.+..++.++. -+.|--+.||||||||||.+++-||+.
T Consensus 39 ~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 39 NAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 44555555442 244556679999999999999999985
No 259
>PHA00729 NTP-binding motif containing protein
Probab=96.34 E-value=0.002 Score=64.93 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=24.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.++++|+||||||++|.+||..++..+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 69999999999999999999988743333
No 260
>PRK14528 adenylate kinase; Provisional
Probab=96.30 E-value=0.0031 Score=62.19 Aligned_cols=31 Identities=32% Similarity=0.600 Sum_probs=27.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+-++++||||+|||++|+.+|...|++.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4589999999999999999999999877654
No 261
>PRK13946 shikimate kinase; Provisional
Probab=96.26 E-value=0.0034 Score=61.77 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
++.|+|.|+||||||++++.||..+|++|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 567999999999999999999999999988755
No 262
>PRK14530 adenylate kinase; Provisional
Probab=96.26 E-value=0.0033 Score=63.52 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=27.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.|++.||||+|||++|+.||..++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999877654
No 263
>PRK02496 adk adenylate kinase; Provisional
Probab=96.22 E-value=0.0034 Score=61.68 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=25.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
++++||||+|||++|+.||...+++.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999998776654
No 264
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.003 Score=60.25 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=27.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-++++|.||||||++++.|+ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999999887
No 265
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.21 E-value=0.0046 Score=60.19 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
++.|+|.||+|+|||++++.+|+.++++++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 456999999999999999999999999887765
No 266
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.19 E-value=0.003 Score=57.94 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc--------CceeEEeecccce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT--------DACFIRVIGSELV 167 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~--------~~~~~~V~~~~i~ 167 (713)
.+-++++||||+|||++++.++.+. ..+++.++.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4568999999999999999999987 6777777765543
No 267
>PF13245 AAA_19: Part of AAA domain
Probab=96.19 E-value=0.0057 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=16.9
Q ss_pred cEEeeCCCCCchh-HHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKT-LCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT-~la~alA~e~ 154 (713)
-+++.|||||||| ++++.++.-.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3556999999999 6666666544
No 268
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.19 E-value=0.004 Score=60.34 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=28.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+.++|.|+||||||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 45889999999999999999999999988653
No 269
>PRK04040 adenylate kinase; Provisional
Probab=96.17 E-value=0.0041 Score=61.48 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=26.1
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc--CceeE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT--DACFI 159 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~--~~~~~ 159 (713)
|+-|+++|+||||||++++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5678999999999999999999998 55554
No 270
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.14 E-value=0.0039 Score=62.76 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=25.8
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+++||||+|||++|+.||...|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766653
No 271
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.13 E-value=0.0067 Score=64.88 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=32.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+.+..-|.|.|+||||||++++.+|..+|++|+.+.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 577888999999999999999999999999999543
No 272
>PRK14527 adenylate kinase; Provisional
Probab=96.13 E-value=0.0041 Score=61.55 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
+.+.-++++||||+|||++|+.+|...++..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 446679999999999999999999999876544
No 273
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.12 E-value=0.0042 Score=62.77 Aligned_cols=29 Identities=34% Similarity=0.627 Sum_probs=26.0
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+++||||+|||++|+.||...+++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999766653
No 274
>KOG0991|consensus
Probab=96.11 E-value=0.0045 Score=61.48 Aligned_cols=55 Identities=25% Similarity=0.462 Sum_probs=37.5
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
++...+..+.|++|..+.+.+. .-+.+. | ..-.+++.||||||||+-+.++|.++
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl-~via~~-------g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERL-SVIAKE-------G--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHH-HHHHHc-------C--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4444556888888887755532 112222 1 12358999999999999999999874
No 275
>KOG0738|consensus
Probab=96.11 E-value=0.0019 Score=68.59 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=32.7
Q ss_pred cceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 677 VTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 677 ~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
..|.....-|+|.||||-||++.|+-|+|||++|+.+
T Consensus 198 lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~m 234 (491)
T KOG0738|consen 198 LERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWM 234 (491)
T ss_pred HHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhh
Confidence 3466677889999999999999999999999999863
No 276
>KOG0737|consensus
Probab=96.09 E-value=0.003 Score=67.00 Aligned_cols=27 Identities=41% Similarity=0.677 Sum_probs=25.9
Q ss_pred CcccccccchHHHHHHHHHHHhcccCC
Q psy6523 687 DVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 687 ~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+|+|+|||||+++|++|+|.|.+|+++
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~ 114 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRR 114 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccc
Confidence 699999999999999999999999985
No 277
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.0042 Score=59.69 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=34.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeecc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 173 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~Ge 173 (713)
.+.+.|.|++|+|||++.+++|..++.+|+-.+ .++.+..|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g~ 43 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTGM 43 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHCc
Confidence 356899999999999999999999999999866 344444443
No 278
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.07 E-value=0.0053 Score=56.81 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
.+..-++|.|+.|+|||+++++++..++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445568899999999999999999999875
No 279
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.06 E-value=0.0046 Score=60.64 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=25.2
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.-+++.||||+|||++++.+|..+|...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 357889999999999999999998765443
No 280
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0036 Score=68.71 Aligned_cols=24 Identities=46% Similarity=0.782 Sum_probs=21.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
-.+++|++|||||||||+|+-+.+
T Consensus 197 GgHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 197 GGHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred cCCcEEEecCCCCchHHhhhhhcc
Confidence 367899999999999999998875
No 281
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.87 E-value=0.0076 Score=57.06 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=24.8
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
++++||||+|||+++..++... +.+++.++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999999998876 445555544
No 282
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.87 E-value=0.0048 Score=58.52 Aligned_cols=33 Identities=30% Similarity=0.618 Sum_probs=26.6
Q ss_pred eeCCCCCchhHHHHHHhhccCceeEEeecccceee
Q psy6523 135 LFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK 169 (713)
Q Consensus 135 L~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~ 169 (713)
+.||||+|||++|+.||.+.|.. .|+..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 57999999999999999998754 5555566643
No 283
>PLN02674 adenylate kinase
Probab=95.86 E-value=0.0069 Score=62.12 Aligned_cols=39 Identities=26% Similarity=0.639 Sum_probs=30.6
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
.++..++|.||||+|||++|+.||...+++.+ +..+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHH
Confidence 34466999999999999999999999986544 4445543
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.85 E-value=0.0076 Score=58.71 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCce---eEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDAC---FIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~---~~~V~~ 163 (713)
..++.++++||+|+|||.+++++....... ++.++.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~ 60 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINC 60 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 557899999999999999999888766554 444443
No 285
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.85 E-value=0.012 Score=67.89 Aligned_cols=65 Identities=25% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccccee
Q psy6523 96 ARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQ 168 (713)
Q Consensus 96 ~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s 168 (713)
.++++.+|....+++.+...-.- ......|||+|++|||||++|++|... .+.||+.|++..+-.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~--------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV--------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH--------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 46777788777655444333211 123557999999999999999999976 457999999987643
No 286
>PRK14526 adenylate kinase; Provisional
Probab=95.85 E-value=0.0066 Score=61.12 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=27.1
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
++|+||||+|||++++.+|...+.+.+ +..+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 789999999999999999999886654 444444
No 287
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.84 E-value=0.035 Score=62.66 Aligned_cols=39 Identities=38% Similarity=0.530 Sum_probs=32.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQ 168 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s 168 (713)
...+|++|++||||+++|+++... .+.+|+.|++..+-.
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~ 207 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE 207 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH
Confidence 456999999999999999999765 457899999876643
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.82 E-value=0.0049 Score=62.16 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=20.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHh
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVA 151 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA 151 (713)
|.-+|+||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5669999999999999999997
No 289
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.79 E-value=0.045 Score=61.66 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
....++++|++||||+.+|+++.... +.+|+.|++..+.
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~ 202 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIP 202 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCC
Confidence 45679999999999999999997654 5689999987664
No 290
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.78 E-value=0.0078 Score=59.51 Aligned_cols=35 Identities=40% Similarity=0.446 Sum_probs=27.4
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
-+++.||+|||||.+|-++|.++|+|++..+.-..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 46899999999999999999999999999876443
No 291
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.76 E-value=0.013 Score=66.90 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=45.4
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc-----------cCceeEEeeccc
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR-----------TDACFIRVIGSE 165 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e-----------~~~~~~~V~~~~ 165 (713)
.|++.+|....+++......+ |. .....||++|++||||+++|++|-.. .+.||+.|++..
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~----~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaa 288 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILL----YA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 288 (538)
T ss_pred chhheeeCCHHHHHHHHHHHH----Hh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeeccc
Confidence 577788877755543322221 11 23567999999999999999999766 567999999877
Q ss_pred ce
Q psy6523 166 LV 167 (713)
Q Consensus 166 i~ 167 (713)
+-
T Consensus 289 l~ 290 (538)
T PRK15424 289 IA 290 (538)
T ss_pred CC
Confidence 64
No 292
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.74 E-value=0.01 Score=48.30 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.2
Q ss_pred EEeeCCCCCchhHHHHHHhhcc-CceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT-DACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~-~~~~~~V~ 162 (713)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 5678999999999999999984 23344443
No 293
>PRK01184 hypothetical protein; Provisional
Probab=95.70 E-value=0.0078 Score=59.05 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=25.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
-|+|+||||+|||++++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788999877654
No 294
>PRK04182 cytidylate kinase; Provisional
Probab=95.68 E-value=0.0083 Score=58.31 Aligned_cols=28 Identities=36% Similarity=0.643 Sum_probs=26.2
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|.+.|+||||||++++.+|..+|.+++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 7899999999999999999999998876
No 295
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.66 E-value=0.0078 Score=57.85 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
|.++|+||||||+|+++||.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999988 77766
No 296
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.55 E-value=0.02 Score=61.76 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=42.8
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
.+++.+|.....++.+...-+- ......||++|++||||+++|++|-... +.||+.|++..+
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~--------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL--------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH--------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCC
Confidence 4556666666544333332211 1335679999999999999999997654 478999998765
No 297
>PHA02774 E1; Provisional
Probab=95.54 E-value=0.012 Score=66.61 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=27.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
|++..+.+++|||||||||++|-+|++.++-.++
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi 463 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI 463 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5555578999999999999999999998764443
No 298
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.50 E-value=0.011 Score=57.06 Aligned_cols=29 Identities=34% Similarity=0.643 Sum_probs=26.2
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.++|++|+|||++|+.+|..+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887653
No 299
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.0088 Score=58.49 Aligned_cols=35 Identities=26% Similarity=0.607 Sum_probs=28.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
.|++.||||.|||++|+.||+. .++.+++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 4789999999999999999999 6667777555543
No 300
>KOG1970|consensus
Probab=95.46 E-value=0.014 Score=64.90 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=45.3
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
++...+.+.++..-+...+ ..+.+.|++...+.. --..+-+||+||+|||||+.++-|+.|+|..++.-+.+
T Consensus 73 ~eKy~P~t~eeLAVHkkKI-~eVk~WL~~~~~~~~--~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np 144 (634)
T KOG1970|consen 73 VEKYKPRTLEELAVHKKKI-SEVKQWLKQVAEFTP--KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP 144 (634)
T ss_pred HHhcCcccHHHHhhhHHhH-HHHHHHHHHHHHhcc--CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCC
Confidence 4445555666554444322 234444442222211 11245688999999999999999999999998887633
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.45 E-value=0.015 Score=59.62 Aligned_cols=40 Identities=35% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~ 165 (713)
|+++...+|++||||||||.+|.-++.+ .|.+.+.|+..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 7899999999999999999998765543 477777776543
No 302
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.45 E-value=0.015 Score=67.76 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CeEEEEecCCC--CCccccccCCCCCC---eEEEecC--C-CHHHHHHHHHHhhccCCC---cccccHHHHHH-------
Q psy6523 509 NIKVLMATNRP--DTLDPALMRPGRLD---RKVEFGL--P-DLEGRTHIFKIHARSMSV---ERDIRFELLAR------- 570 (713)
Q Consensus 509 ~v~vi~aTN~p--~~lD~Al~RpGRfd---~~i~i~~--P-~~~~R~~il~~~~~~~~~---~~~~~~~~la~------- 570 (713)
++-||++||+. ..+||+|.. ||. .+++|.- | +.+.+..+++.+.+.... ...++-+.++.
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 46788888885 678999999 886 5555542 3 356667776654432211 11333322222
Q ss_pred hCC--C---CCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 571 LCP--N---STGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 571 ~t~--g---~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
.+. + ..-++|..|+++|...|..++...++.+|+.+|+.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 221 1 34789999999999999988888899999988874
No 303
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.43 E-value=0.0083 Score=54.60 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEeeCCCCCchhHHHHHHhhcc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~ 154 (713)
|+|.|+||+|||++|+.|+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 304
>PLN02459 probable adenylate kinase
Probab=95.41 E-value=0.014 Score=60.16 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=27.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
-++|.||||+|||++|+.+|...+++.+ +..+++
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdll 64 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLV 64 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHH
Confidence 3888999999999999999999886554 444554
No 305
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.069 Score=54.99 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCC
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLP 541 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P 541 (713)
..-|.||..++. +..++++|..|+.++.|.|-++. |... +.++.+
T Consensus 103 ~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 103 QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 567889999984 67788999999999999999999 7644 444444
No 306
>PRK12338 hypothetical protein; Provisional
Probab=95.40 E-value=0.013 Score=62.18 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
.|.-+++.|+||+|||++|+++|..+|+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 467899999999999999999999999764
No 307
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.38 E-value=0.019 Score=57.57 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-++++||||||||.++..+|.+. +...+.|+..
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 77888889999999999999999888643 4555555543
No 308
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.37 E-value=0.012 Score=55.68 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=27.6
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
+++.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6889999999999999999987 666666654443
No 309
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.34 E-value=0.0086 Score=67.76 Aligned_cols=32 Identities=63% Similarity=1.071 Sum_probs=29.7
Q ss_pred eeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 682 VEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 682 ~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
..++|+++|+|||||++++++|+++|++|++|
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~ 204 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLH 204 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999876
No 310
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.32 E-value=0.013 Score=62.22 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=27.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
+-+++.||||||||++|+.||..+. +++.++..++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 4588999999999999999999983 34444544443
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.31 E-value=0.016 Score=60.32 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=29.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~ 163 (713)
|+++..-+|++||||||||.+|.-+|.+ .|.+.+.++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 7888999999999999999998887653 3555555553
No 312
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.31 E-value=0.016 Score=57.60 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
++-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999988755
No 313
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.30 E-value=0.014 Score=59.31 Aligned_cols=40 Identities=35% Similarity=0.391 Sum_probs=30.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~~~ 165 (713)
|+++..-+|+.||||+|||.++.-++.+. |.+++.|+-.+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 78899999999999999999988766432 77777777543
No 314
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.30 E-value=0.016 Score=56.82 Aligned_cols=32 Identities=34% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEeeCCCCCchhHHHHHHhhc---cCceeEEeecc
Q psy6523 133 VLLFGPPGTGKTLCARAVANR---TDACFIRVIGS 164 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~ 164 (713)
+|++||||||||+++..++.+ .|.+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 789999999999999877663 35666666543
No 315
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.27 E-value=0.019 Score=57.96 Aligned_cols=37 Identities=35% Similarity=0.455 Sum_probs=29.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
|+.+.+-++++||||+|||+++..+|.+. +.+++.++
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 67777779999999999999999999754 44555554
No 316
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.25 E-value=0.026 Score=66.62 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=46.3
Q ss_pred ccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 96 ARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 96 ~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
..|++.+|.....++.+...-+-. .....|||+|++||||+++|++|.+.. +.||+.|++..+-
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a--------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA--------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh--------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 457888887776555444332211 234459999999999999999998764 4799999987664
No 317
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.22 E-value=0.017 Score=56.96 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.8
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
-+.|.||+|+|||++++.||+..+.+|
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 478999999999999999999887654
No 318
>PRK05973 replicative DNA helicase; Provisional
Probab=95.22 E-value=0.02 Score=58.55 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=30.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
|+.+..-+|+.|+||+|||+++--+|.+. |.+++.++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 78888889999999999999888776543 666666554
No 319
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.21 E-value=0.021 Score=58.36 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~ 163 (713)
|++...-++++||||+|||+++..++.+ .|.+++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 7888999999999999999999999754 3666666665
No 320
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.21 E-value=0.014 Score=63.43 Aligned_cols=30 Identities=37% Similarity=0.651 Sum_probs=26.8
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
..+|+|+.||||+|||||+|.-.....+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 578999999999999999999998876654
No 321
>KOG0651|consensus
Probab=95.20 E-value=0.015 Score=60.42 Aligned_cols=66 Identities=52% Similarity=0.864 Sum_probs=61.0
Q ss_pred cccCCCCcceeeecchhhhHhhhcCchhh--------------------hhhcCCccccCCCCCcHHHHHHHHHHHhCcc
Q psy6523 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDDGAGGDNEVQRTMLELINQPE 120 (713)
Q Consensus 61 aia~~~~~~~i~~~~s~li~~~~ge~~~l--------------------id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~ 120 (713)
+++...++.|++.+.++++++|.||++++ ||++++.+|......+.++++.+++++++.+
T Consensus 185 ~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 185 AVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD 264 (388)
T ss_pred HHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence 67888999999999999999999999998 5899999999999999999999999999888
Q ss_pred cccccC
Q psy6523 121 KFVNLG 126 (713)
Q Consensus 121 ~~~~~g 126 (713)
.|..+|
T Consensus 265 gfd~l~ 270 (388)
T KOG0651|consen 265 GFDTLH 270 (388)
T ss_pred cchhcc
Confidence 887765
No 322
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=95.19 E-value=0.026 Score=64.63 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=45.4
Q ss_pred ccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccce
Q psy6523 96 ARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELV 167 (713)
Q Consensus 96 ~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~ 167 (713)
..|++.+|.....++.....-+ |. .....||++|++||||+++|++|-+. .+.||+.|++..+-
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----YA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----Hh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 4577788877655543322211 11 23567999999999999999999864 46799999987664
No 323
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.18 E-value=0.019 Score=57.92 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=16.6
Q ss_pred EEeeCCCCCchhHHHHHHhhcc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~ 154 (713)
.++.||||||||.++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7889999999997666666544
No 324
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=95.18 E-value=0.021 Score=58.20 Aligned_cols=40 Identities=30% Similarity=0.307 Sum_probs=33.4
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
...|..++||.|||||..++++|.-+|.+++.+++++-++
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~ 70 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD 70 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc
Confidence 3567789999999999999999999999999999887665
No 325
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.12 E-value=0.029 Score=54.05 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=30.2
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCC
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRL 532 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRf 532 (713)
..-|.||..|+. +..++++|.+|+.++.|-|.++. |.
T Consensus 117 ~a~NaLLK~LEe--pp~~~~fiL~t~~~~~il~TI~S--Rc 153 (162)
T PF13177_consen 117 EAQNALLKTLEE--PPENTYFILITNNPSKILPTIRS--RC 153 (162)
T ss_dssp HHHHHHHHHHHS--TTTTEEEEEEES-GGGS-HHHHT--TS
T ss_pred HHHHHHHHHhcC--CCCCEEEEEEECChHHChHHHHh--hc
Confidence 678889999994 45689999999999999999998 76
No 326
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.11 E-value=0.03 Score=66.69 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=44.4
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccce
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELV 167 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~ 167 (713)
.|++.+|.....++.+.+.-. + ......||++|++|||||++|++|... .+.+|+.|++..+.
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~----~----a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEM----V----AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred cccceeecCHHHHHHHHHHHH----H----hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 566777776655543322221 1 123567999999999999999999874 46799999987654
No 327
>PRK06696 uridine kinase; Validated
Probab=95.08 E-value=0.021 Score=58.03 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=32.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
..|.-|.+.|++|+|||++|+.||..+ |.+++.++..++.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 346778899999999999999999988 6677776655544
No 328
>PRK14529 adenylate kinase; Provisional
Probab=95.07 E-value=0.014 Score=59.12 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=27.4
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
|+|.||||+|||++++.||..++.+.+. ..+++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is--~gdll 35 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE--SGAIF 35 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc--cchhh
Confidence 7899999999999999999999877654 34444
No 329
>PF13173 AAA_14: AAA domain
Probab=95.05 E-value=0.021 Score=52.50 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=28.2
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC--ceeEEeeccc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD--ACFIRVIGSE 165 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~--~~~~~V~~~~ 165 (713)
+-++|+||.|||||++++.+|.+.. ..++.++..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5689999999999999999998876 5566665443
No 330
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.05 E-value=0.017 Score=56.17 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+|.-|++.|+||+|||++|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999876
No 331
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.05 E-value=0.019 Score=57.19 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=33.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc-CceeEEeecccceeee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT-DACFIRVIGSELVQKY 170 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~-~~~~~~V~~~~i~s~~ 170 (713)
..|.-+++-|+||+|||++++.+..+. +-.++.|++.++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 568899999999999999999999988 7888999987776543
No 332
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.98 E-value=0.031 Score=61.01 Aligned_cols=66 Identities=26% Similarity=0.339 Sum_probs=48.6
Q ss_pred CccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc----cCceeEEeeccccee
Q psy6523 95 GARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR----TDACFIRVIGSELVQ 168 (713)
Q Consensus 95 ~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e----~~~~~~~V~~~~i~s 168 (713)
...+.+.+|.....++.+.+... | .+....||++|++||||+++|++|... .+.||+.||+..+-.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~----~----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA----Y----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh----h----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34567778877766655544443 2 133567999999999999999998753 467999999987664
No 333
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.94 E-value=0.028 Score=57.07 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
|++...-++++||||+|||.+|..+|.+. +..++.|+.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 67777889999999999999999999743 555555543
No 334
>PRK08233 hypothetical protein; Provisional
Probab=94.92 E-value=0.024 Score=55.18 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.-|.+.|+||+|||++|+.||..++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4467789999999999999999886
No 335
>PLN02199 shikimate kinase
Probab=94.88 E-value=0.022 Score=59.56 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+.+.|+|.|++|||||++++.+|..+|++|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 3568999999999999999999999999998765
No 336
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.85 E-value=0.031 Score=57.10 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=27.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~ 162 (713)
|+++..-+++.||||||||+++..++.+ -|...+.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 6788888999999999999997655543 255555555
No 337
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.85 E-value=0.02 Score=59.25 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=25.6
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
|+|.|+||+|||++|+++|..+ +..++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999876 455666654
No 338
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.83 E-value=0.02 Score=54.37 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.5
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
+-+.+..-+++.||+||||++|.|++|+
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 3456777899999999999999999995
No 339
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.83 E-value=0.03 Score=58.23 Aligned_cols=41 Identities=37% Similarity=0.460 Sum_probs=32.6
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhh---ccCceeEEeeccc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVAN---RTDACFIRVIGSE 165 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~---e~~~~~~~V~~~~ 165 (713)
-|++..+-+|++|+||||||.++...+. +.|.+++.|+-.+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4688888999999999999999776665 2378888887544
No 340
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.82 E-value=0.027 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.9
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
.-+.++||+|||||++++++++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 347899999999999999999988763
No 341
>PRK13808 adenylate kinase; Provisional
Probab=94.78 E-value=0.021 Score=61.09 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=27.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
|+|+||||+|||++++-||..+|++.+ +..+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 899999999999999999999887544 4455553
No 342
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.77 E-value=0.032 Score=56.77 Aligned_cols=38 Identities=34% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~ 163 (713)
|+++..-++++||||||||.++..++.+ .+.+.+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 7888899999999999999999877642 3555555554
No 343
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.76 E-value=0.064 Score=60.02 Aligned_cols=69 Identities=28% Similarity=0.383 Sum_probs=51.0
Q ss_pred hcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 92 AIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 92 ~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
.-...+|+|++|-.....+.+...- .+ ...+..||++|.+||||-++|++|=+.. +-||+.||+.-|-.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~ak----r~----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAK----RI----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHH----hh----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3344578899988886655443332 21 3457789999999999999999998854 57899999876643
No 344
>PRK10536 hypothetical protein; Provisional
Probab=94.73 E-value=0.032 Score=57.39 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.2
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 345
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.72 E-value=0.021 Score=55.06 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.1
Q ss_pred eCCCCCchhHHHHHHhhccCceeE
Q psy6523 136 FGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 136 ~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
.||||||||++++++|+.++..++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~ 24 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL 24 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE
Confidence 399999999999999999986544
No 346
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.70 E-value=0.045 Score=62.88 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=45.6
Q ss_pred CCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccce
Q psy6523 94 GGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELV 167 (713)
Q Consensus 94 ~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~ 167 (713)
....|++.+|.....++.+.+.-+ +. ....-|||+|++||||+++|+++-.. .+.||+.|++..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~----~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK----LA----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH----Hh----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 445788888877755544333321 11 12344999999999999999998653 34789999987754
No 347
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.65 E-value=0.13 Score=57.72 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=33.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s 168 (713)
....++++|.+||||+++|+++-.. .+.+|+.+++..+..
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~ 203 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE 203 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH
Confidence 3567999999999999999999754 457899999876543
No 348
>KOG1514|consensus
Probab=94.64 E-value=0.26 Score=56.65 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred CCCeEEEEecCCCCCcccccc-C-CCCCC-eEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHH--HH
Q psy6523 507 RGNIKVLMATNRPDTLDPALM-R-PGRLD-RKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAE--IR 581 (713)
Q Consensus 507 ~~~v~vi~aTN~p~~lD~Al~-R-pGRfd-~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgad--i~ 581 (713)
..+++||+-.|..|..-.-|. | .-|++ .+|.|.+=+.++-.+|+..-|..+..-.+--++-+|++-...||.- --
T Consensus 539 ~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRral 618 (767)
T KOG1514|consen 539 NSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRAL 618 (767)
T ss_pred CCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHH
Confidence 346788888887766554444 1 22554 5677887899999999999988773322223344455555566643 33
Q ss_pred HHHHHHHHHHHHHHh-------hhcCHHHHHHHHhHhhhc
Q psy6523 582 SVCTEAGMFAIRARR-------KVASEKDFLEAVNKVARC 614 (713)
Q Consensus 582 ~l~~~A~~~a~~~~~-------~~v~~~d~~~a~~~~~~~ 614 (713)
.+|++|+..|-.+.. ..+...|+.+|++.+..+
T Consensus 619 dic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 619 DICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 489999999988766 568889999999887554
No 349
>KOG3354|consensus
Probab=94.63 E-value=0.028 Score=52.53 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=29.2
Q ss_pred CCCC-cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPK-GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~-gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.|-+ .+++-|+.|||||+++++++.++++.|+.=+
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 3444 5677899999999999999999999988633
No 350
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.61 E-value=0.027 Score=56.53 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=26.2
Q ss_pred CcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 118 QPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 118 ~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+|..|.. -..++-++|.||+|||||+|+++|+..
T Consensus 3 ~~~~~~~--~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 3 NPWLFNK--PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CccccCC--CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4555544 345677889999999999999999854
No 351
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.60 E-value=0.036 Score=59.80 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=32.6
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELV 167 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~ 167 (713)
....|||+|++||||+++|++|-.. .+.||+.|++..+-
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALS 62 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCC
Confidence 3567999999999999999999654 45799999987654
No 352
>PRK04328 hypothetical protein; Provisional
Probab=94.57 E-value=0.038 Score=57.17 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhh---ccCceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVAN---RTDACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~---e~~~~~~~V~~~ 164 (713)
|+++..-+|++||||||||.|+.-++. ..|.+.+.|+..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 688889999999999999999876554 346666666643
No 353
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=94.57 E-value=0.02 Score=55.58 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=33.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 170 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~ 170 (713)
=|+|+||+-.|||++|++|...+..||+.++...++..+
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~ 41 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM 41 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence 489999999999999999999999999999988887644
No 354
>PF05729 NACHT: NACHT domain
Probab=94.56 E-value=0.023 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|-++++|+||+|||++++.++...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 347899999999999999999744
No 355
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.55 E-value=0.034 Score=59.36 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=29.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-+++|||||||||+||..++.+. |..++.|+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 67888889999999999999988766543 4455555543
No 356
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.51 E-value=0.036 Score=53.85 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
++.-+.+.|+||+|||++|+++|..+ +..+..++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 34568899999999999999999876 434555554
No 357
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.47 E-value=0.019 Score=53.58 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=26.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCc---eeEEeec
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDA---CFIRVIG 163 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~---~~~~V~~ 163 (713)
...-||++|+|||||+++|++|....+. +|+.+++
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~ 57 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDC 57 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEech
Confidence 3456999999999999999999986654 4444443
No 358
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.44 E-value=0.023 Score=51.81 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=29.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc--cceeeee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS--ELVQKYV 171 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~--~i~s~~~ 171 (713)
++..-|+|+|+=|.|||+++|++|..+|..- .|+.| .+++.|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF~l~~~Y~ 57 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE-EVTSPTFSLVNEYE 57 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S-----TTTTSEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC-CcCCCCeEEEEEec
Confidence 3445699999999999999999999999876 34433 3456664
No 359
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.41 E-value=0.027 Score=60.65 Aligned_cols=25 Identities=48% Similarity=0.751 Sum_probs=20.9
Q ss_pred CCCCc--EEeeCCCCCchhHHHHHHhh
Q psy6523 128 EPPKG--VLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 128 ~~p~g--vLL~GPpGtGKT~la~alA~ 152 (713)
.-.+| +-|-||+|||||++.|.||+
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 33444 66889999999999999997
No 360
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.38 E-value=0.032 Score=54.15 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=27.3
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
-+|+.||||+|||.+|..+|.+.+.+++.+.-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence 37999999999999999999998877665553
No 361
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.38 E-value=0.024 Score=55.58 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=25.3
Q ss_pred cEEeeCCCCCchhHHHHHHhhccC---ceeEEeec
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTD---ACFIRVIG 163 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~---~~~~~V~~ 163 (713)
-++|+|+||+|||++|+-+|.++. +..+.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 478999999999999999999775 44444443
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.35 E-value=0.039 Score=62.79 Aligned_cols=40 Identities=30% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc----cCceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR----TDACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e----~~~~~~~V~~~~ 165 (713)
|+++.+.+|+.||||||||+||.-++.+ .|.+.+.|+..+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 7899999999999999999999987542 367777777543
No 363
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.34 E-value=0.037 Score=43.93 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.0
Q ss_pred cEEeeCCCCCchhHHHHHHhh
Q psy6523 132 GVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~ 152 (713)
-.|++||.|+|||++..|+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999864
No 364
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.32 E-value=0.029 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.8
Q ss_pred EEeeCCCCCchhHHHHHHhhcc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~ 154 (713)
++|+|+||+|||++++.+..++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 365
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.28 E-value=0.049 Score=55.54 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+++..-++++||||||||.++..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788888999999999999999999854
No 366
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.24 E-value=0.04 Score=53.87 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.++|+||+|||++++.+++ .|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 67999999999999999998 77766543
No 367
>PLN02165 adenylate isopentenyltransferase
Probab=94.23 E-value=0.041 Score=58.78 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.+-+.|.||+|+|||.||..||..++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 345889999999999999999999987655543
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.23 E-value=0.039 Score=54.38 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=24.0
Q ss_pred EEeeCCCCCchhHHHHHHhhcc-CceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT-DACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~-~~~~~~V~ 162 (713)
|.+.|+||+|||++|+.|+..+ ++.++..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5678999999999999999987 45554433
No 369
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.22 E-value=0.051 Score=55.11 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~ 165 (713)
|+++..-+|++|+||+|||.++..+|.+ .|.+.+.++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 7888888999999999999998888753 366666666543
No 370
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.21 E-value=0.031 Score=49.67 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHh
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVA 151 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA 151 (713)
.+.+...+.|.||+|+|||+|++++.
T Consensus 11 ~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 11 DVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34566789999999999999999987
No 371
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.21 E-value=0.044 Score=61.61 Aligned_cols=40 Identities=38% Similarity=0.497 Sum_probs=32.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~ 165 (713)
|+.+..-+|++||||+|||+|+..+|... +..++.++..+
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 68888889999999999999999998754 56677776544
No 372
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.21 E-value=0.033 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
-+++.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 3789999999999999999987653
No 373
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.21 E-value=0.033 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.4
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
=+.|.||+|+|||++++.|++.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccc
Confidence 47899999999999999999976543
No 374
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.19 E-value=0.045 Score=58.51 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-+++|||||||||+||..++.+. |...+.|+..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 67778889999999999999999877543 5555565543
No 375
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.16 E-value=0.044 Score=54.67 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.8
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.+-+.|.||+|+|||+|++.+++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4566789999999999999999999876
No 376
>PRK06761 hypothetical protein; Provisional
Probab=94.15 E-value=0.041 Score=57.65 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=27.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+-+++.||||+|||++++.++..+....+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 45889999999999999999999887666554
No 377
>PRK08356 hypothetical protein; Provisional
Probab=94.11 E-value=0.046 Score=54.24 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=24.0
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
.-+.|.||||+|||++|+.|+ +.|.+ .|+..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~ 36 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCS 36 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCC
Confidence 347899999999999999996 46665 44443
No 378
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.95 E-value=0.058 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.-|.+.||+|||||+|+++|+..++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456688999999999999999999873
No 379
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.89 E-value=0.045 Score=55.37 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=25.6
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
-|-+.||+|||||++++.||..++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 46788999999999999999999987663
No 380
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.89 E-value=0.064 Score=67.76 Aligned_cols=75 Identities=23% Similarity=0.363 Sum_probs=50.2
Q ss_pred chhhhHhhhcCchhhhhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 75 GSELVQKYVGEGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 75 ~s~li~~~~ge~~~lid~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.++++++++.+-.+.+...+...+++.+|.+..+++ +..++. ++....+-|-++||+|.|||+||+++++..
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~-l~~lL~-------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAK-MSSLLH-------LESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHH-HHHHHc-------cccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 456677766664444444455567778887665543 444442 223456778899999999999999998876
Q ss_pred Cce
Q psy6523 155 DAC 157 (713)
Q Consensus 155 ~~~ 157 (713)
...
T Consensus 232 ~~~ 234 (1153)
T PLN03210 232 SRQ 234 (1153)
T ss_pred hhc
Confidence 543
No 381
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=93.85 E-value=0.055 Score=57.58 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=29.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
++-+++.||+|+|||.+|..||.+.+..++..+.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 4568899999999999999999999887776654
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.84 E-value=0.1 Score=58.25 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
.+|.-++++||+|+|||+++..+|..+ |..+..|+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 468899999999999999999998754 444444443
No 383
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.83 E-value=0.051 Score=57.26 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=27.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
..|--||+.||+|||||++|..||..++.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356779999999999999999999999877
No 384
>PTZ00202 tuzin; Provisional
Probab=93.83 E-value=0.12 Score=56.87 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=39.8
Q ss_pred CCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 100 DGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 100 d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
+-.|-..++. .+...+...+ ...|+=+.|.||+|||||++++.++...+.+.+.++..
T Consensus 263 ~FVGReaEla-~Lr~VL~~~d------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 263 QFVSREAEES-WVRQVLRRLD------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCCcHHHHH-HHHHHHhccC------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 4445444433 4455555433 24566788999999999999999999988776665543
No 385
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.78 E-value=0.064 Score=54.99 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~ 163 (713)
|+.+..-+++.||||+|||.++..+|... +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 78888889999999999999988877643 777776664
No 386
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.77 E-value=0.048 Score=53.17 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=24.6
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
+++.+..-+.+-||+|||||+|..-+|+
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 4567777788999999999999999997
No 387
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.76 E-value=0.041 Score=58.92 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=21.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
....=+.|-||+|||||++.|.||+
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3334478899999999999999996
No 388
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.73 E-value=0.043 Score=62.79 Aligned_cols=29 Identities=34% Similarity=0.552 Sum_probs=25.8
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+.+++..-+|+.||+|||||+|.||||+=
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35678888999999999999999999973
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.72 E-value=0.055 Score=53.00 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=25.8
Q ss_pred EEeeCCCCCchhHHHHHHhhccC---ceeEEeecccc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTD---ACFIRVIGSEL 166 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~---~~~~~V~~~~i 166 (713)
|.+.|+||+|||++|+.|+..++ .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 67899999999999999999863 44445544433
No 390
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.68 E-value=1.9 Score=44.16 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=56.2
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhccCC----CcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHH
Q psy6523 531 RLDRKVEFGLPDLEGRTHIFKIHARSMS----VERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDF 604 (713)
Q Consensus 531 Rfd~~i~i~~P~~~~R~~il~~~~~~~~----~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~ 604 (713)
|++..|++++-+.++-...++..++.-. +-++-.+..++..+.| .+.-|.++|..|...|...+...|+...+
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 7888888888899988889988887653 3244456778888888 67889999999988888877776665443
No 391
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=93.66 E-value=0.043 Score=51.09 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=22.7
Q ss_pred CCCCCchhHHHHHHhhccCceeEE
Q psy6523 137 GPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 137 GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|..|||||+++.+||..+|+.|+.
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fid 25 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFID 25 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceec
Confidence 889999999999999999998886
No 392
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.64 E-value=0.077 Score=56.78 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|++...-++++||||||||.++..+|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 67888888999999999999999988664
No 393
>PF13479 AAA_24: AAA domain
Probab=93.61 E-value=0.048 Score=54.99 Aligned_cols=21 Identities=48% Similarity=1.007 Sum_probs=18.7
Q ss_pred CCcEEeeCCCCCchhHHHHHH
Q psy6523 130 PKGVLLFGPPGTGKTLCARAV 150 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~al 150 (713)
+--+|+|||||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 345899999999999999988
No 394
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.59 E-value=0.054 Score=51.56 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=32.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccceeee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQKY 170 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s~~ 170 (713)
.-|.|+|.||+|||++|+++... .|.+.+.+++..+...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 45789999999999999999985 47889999887776544
No 395
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.58 E-value=0.055 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++=+.|.||+|+|||+|++.|..+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 567789999999999999999988753
No 396
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.57 E-value=0.056 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=22.1
Q ss_pred CCCc--EEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKG--VLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~g--vLL~GPpGtGKT~la~alA~e~~ 155 (713)
||+| +.+.||+|+|||+|+++|++.++
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455 45789999999999999998765
No 397
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.49 E-value=0.094 Score=52.14 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=24.5
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSE 165 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~ 165 (713)
+-+++.||||||||+++++++.. .+..++-+.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 45788999999999999988753 355566555443
No 398
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.47 E-value=0.055 Score=54.80 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|+++..-++++||||||||.++..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 67888889999999999999999998754
No 399
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.47 E-value=0.066 Score=49.97 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
+.+.||+|+|||++++.|+.+....+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 56889999999999999999865543
No 400
>PRK13975 thymidylate kinase; Provisional
Probab=93.44 E-value=0.053 Score=53.61 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
+=|.+.|++|+|||++++.||..++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3478899999999999999999998643
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.098 Score=56.81 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHhCcccc-cccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 105 DNEVQRTMLELINQPEKF-VNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 105 ~~~~~~~i~~~l~~~~~~-~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+.+.+.+.|...-.. ..+.+.+++-++|.||.|+|||+++..+|..+
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666665432111 12235678889999999999999999999754
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.41 E-value=0.044 Score=50.68 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=25.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.+..-+.+.||+|+|||+|.++|++...
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccc
Confidence 356667789999999999999999998654
No 403
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.37 E-value=0.089 Score=54.31 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
....-++++||+|||||+|++.+++.....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 345568999999999999999999977653
No 404
>PRK00023 cmk cytidylate kinase; Provisional
Probab=93.36 E-value=0.053 Score=55.16 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.-|.+.||+|||||++++.||.++|.+++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 457889999999999999999999987765
No 405
>PRK10646 ADP-binding protein; Provisional
Probab=93.34 E-value=0.077 Score=50.30 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc--cceeee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS--ELVQKY 170 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~--~i~s~~ 170 (713)
.+..-|+|.|+=|+|||+++|++|..+|..-. |+.| .++..|
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~-V~SPTFtlv~~Y 69 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQGN-VKSPTYTLVEPY 69 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCCC-CCCCCEeeEEEe
Confidence 34456899999999999999999999997633 5555 344555
No 406
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.078 Score=52.73 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=29.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
.|.-+.|.|++|+|||+++++|+..+ +...+.+++..+.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 45668899999999999999999865 4556666654443
No 407
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.31 E-value=0.068 Score=59.12 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.+-|.+.|++|||||+|+++||...|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 5779999999999999999999998887654
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.30 E-value=0.16 Score=53.24 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+++-++|.||+|+|||+++..+|..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 557888999999999999998888654
No 409
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.29 E-value=0.071 Score=52.99 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=25.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
-|.++|++|+|||++++.++...|.+++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 37899999999999999999877888774
No 410
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.29 E-value=0.074 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEeeCCCCCchhHHHHHHhhcc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~ 154 (713)
|.+.||+|+|||+++++|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999976
No 411
>KOG0060|consensus
Probab=93.28 E-value=0.056 Score=60.66 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.7
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
+.++....+|++||.|||||+|.|.+|+
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhc
Confidence 3466677899999999999999999996
No 412
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.24 E-value=0.095 Score=56.27 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|++...-++++||||||||.++.-+|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 68888889999999999999999998654
No 413
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.23 E-value=0.064 Score=50.72 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
..+.-+.++||||.|||+++.-+|+.+...-++|.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 34567899999999999999999987766555554
No 414
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.22 E-value=0.061 Score=57.89 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
.+.|.+.|+||||||+|+++||...+.+++.--+-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 56899999999999999999999999888554433
No 415
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.20 E-value=0.086 Score=51.88 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=25.9
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|.|.||+|+|||++++.||+.+ |..++.+..+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6788999999999999999987 6666555443
No 416
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.18 E-value=0.086 Score=51.69 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
.++.-+.+.|+||+|||+++++++..+ +...+.+++..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 456678899999999999999999876 334555554443
No 417
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.065 Score=54.43 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=21.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+.+..=|-+-||+|||||+|.+.||+-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444778899999999999999973
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.10 E-value=0.09 Score=50.94 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=24.4
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
+++.||||+|||++++.+|..+ +..+..++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6789999999999999988754 555555554
No 419
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=93.10 E-value=0.091 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=29.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
|.+.||+|+|||.+|..+|.+.+..+++++.-.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 67899999999999999999999888777654443
No 420
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.07 E-value=0.12 Score=57.14 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=45.7
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccceee
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSELVQK 169 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i~s~ 169 (713)
.+..+||......+.+.+.- .- ......||+.|..||||-++||||=.. .+.||+++|++.+-..
T Consensus 221 ~~~~iIG~S~am~~ll~~i~----~V----A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIE----VV----AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred ccccceecCHHHHHHHHHHH----HH----hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 44566776665554333331 10 134568999999999999999999874 4689999998877653
No 421
>PLN02840 tRNA dimethylallyltransferase
Probab=93.04 E-value=0.094 Score=57.81 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=30.6
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
..-+++.||+|+|||.+|..||.+++..++..+.-.+
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 3458899999999999999999999988777654333
No 422
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=93.03 E-value=0.09 Score=55.51 Aligned_cols=82 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH-hhccCCCcccccHHHHHHhCC-CCCHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI-HARSMSVERDIRFELLARLCP-NSTGAEIRSVCTE 586 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~-~~~~~~~~~~~~~~~la~~t~-g~sgadi~~l~~~ 586 (713)
++++++-.-....|..-+.+ |||..++-++.++-. .++.. +-.+.+.-..+.+.++..-.. ++|..|.......
T Consensus 190 ~~~~~~l~~~r~~L~~rI~~--R~d~Ml~~Gli~EV~--~L~~~g~~~~~~~~~~iGy~e~~~yl~g~~~~~ea~~~~~~ 265 (308)
T COG0324 190 DILIIALAADREVLYERINR--RVDAMLEQGLIEEVK--ALYARGLHLDLPAMQAIGYKEILAYLDGGISLEEAIERIKT 265 (308)
T ss_pred ceEEEEEeCCHHHHHHHHHH--HHHHHHHccHHHHHH--HHHhccCCccchHHHhcCHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666666777888888888 999998888765432 22222 222333335566777666555 6777777766666
Q ss_pred HHHHHHHH
Q psy6523 587 AGMFAIRA 594 (713)
Q Consensus 587 A~~~a~~~ 594 (713)
+..+=++|
T Consensus 266 ~TRqyAKR 273 (308)
T COG0324 266 ATRQYAKR 273 (308)
T ss_pred HHHHHHHH
Confidence 55544444
No 423
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.00 E-value=0.069 Score=63.82 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=27.2
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|.+.||||||||++|+.||..+|+.++...
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g 33 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTG 33 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecC
Confidence 3678999999999999999999998777654
No 424
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.00 E-value=0.098 Score=51.90 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=25.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.-|.|+|++|+|||++++.++. .|.+++..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~ 32 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDA 32 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEe
Confidence 4588999999999999999997 88765543
No 425
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.98 E-value=0.12 Score=59.72 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCc----eeEEeecccceeeeec
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDA----CFIRVIGSELVQKYVG 172 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~----~~~~V~~~~i~s~~~G 172 (713)
.+.-|.|+|+||+|||++|++||..++. +++.+++..+.....|
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g 438 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS 438 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC
Confidence 3456889999999999999999998775 4566665544333333
No 426
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=92.94 E-value=0.084 Score=58.70 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=28.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
..|.-++++|+||+|||++|..+|..+++..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 3588999999999999999999999999853
No 427
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.93 E-value=0.075 Score=52.31 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.....+++.||+|+|||++++++++...
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34566799999999999999999998653
No 428
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.93 E-value=0.081 Score=60.11 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=28.3
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.|.|.|+||||||++++.+|..++++|+..+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D 32 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD 32 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 3789999999999999999999999999655
No 429
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.92 E-value=0.095 Score=49.48 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=21.9
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
.+|+|+.||+|.|||++|.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 579999999999999999998864
No 430
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.92 E-value=0.14 Score=54.79 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.++.-++|.||+|+|||+++..+|..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456778999999999999999999754
No 431
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.91 E-value=0.06 Score=53.36 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEeeCCCCCchhHHHHHHhhccCc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~ 156 (713)
|-+.||+|+|||++|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568899999999999999998874
No 432
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.91 E-value=0.067 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEeeCCCCCchhHHHHHHhhccC
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++.||+|+|||+++++++....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68889999999999999988764
No 433
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.89 E-value=0.11 Score=54.56 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=36.6
Q ss_pred eEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC---Cc-ccccHHHHHHhCCCC
Q psy6523 510 IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS---VE-RDIRFELLARLCPNS 575 (713)
Q Consensus 510 v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~---~~-~~~~~~~la~~t~g~ 575 (713)
.-||.||.... +-..+. .-+..+.++..+.++-.++|+....... .. .+-....|++.+.|+
T Consensus 130 ~kilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 130 SKILVTTRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp -EEEEEESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccc-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34666776543 222221 2267899998999999999998875443 11 122356888888764
No 434
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=92.87 E-value=0.086 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=29.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|++...-+++||||.|||++++-.+-.-++-.+++
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS 292 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS 292 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE
Confidence 67777778899999999999999999988877665
No 435
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.86 E-value=0.11 Score=56.95 Aligned_cols=40 Identities=35% Similarity=0.494 Sum_probs=31.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~ 165 (713)
|+.+..-+|++||||+|||+|+..+|.+. +.+++.|+..+
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 68888889999999999999999888653 34566666543
No 436
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.84 E-value=0.072 Score=48.32 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
++++++||+|+|||..+.+++.+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 4789999999999999888887654
No 437
>PRK09354 recA recombinase A; Provisional
Probab=92.83 E-value=0.11 Score=56.17 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~ 165 (713)
|++..+-+++|||||||||+||.-++.+ .|...+.|+..+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 6777888999999999999998876643 355555555443
No 438
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.78 E-value=0.14 Score=55.82 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.|+-|+|.||+|+|||+++..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999755
No 439
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.75 E-value=0.086 Score=52.56 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
.+...+-++|.||+|+|||++.+.|+.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 345557889999999999999999985
No 440
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.71 E-value=0.094 Score=59.53 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=26.1
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
++.-|.+.||+|||||++++.||..+|+.++
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~ 313 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYL 313 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEe
Confidence 4456788999999999999999999985444
No 441
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=92.71 E-value=0.075 Score=57.85 Aligned_cols=27 Identities=41% Similarity=0.687 Sum_probs=23.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
...+|||+-||||.|||++|.|+|.-.
T Consensus 261 eraeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 261 ERAEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hhhcceEEecCCCCChhHHHHHHHHHH
Confidence 347899999999999999999999744
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.70 E-value=0.11 Score=59.19 Aligned_cols=43 Identities=26% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
|+.+..-+|+.||||+|||+|+--++.+. |.+.+.++..|..+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~ 304 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRA 304 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHH
Confidence 78888999999999999999988877743 66677777655444
No 443
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.69 E-value=0.11 Score=54.29 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=30.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~ 163 (713)
|+.+..-+++.||||+|||.++..+|... |.+++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 78888889999999999999998887653 666666554
No 444
>PRK13764 ATPase; Provisional
Probab=92.68 E-value=0.064 Score=61.92 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=24.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
...+++|+.||||+|||++++|++....
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998765
No 445
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.65 E-value=0.13 Score=55.06 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=36.1
Q ss_pred CCCCCcHHHHHHHHHHHhCcccccccCC-CCCCcEEeeCCCCCchhHHHHHHhhccCc-eeEEe
Q psy6523 100 DGAGGDNEVQRTMLELINQPEKFVNLGI-EPPKGVLLFGPPGTGKTLCARAVANRTDA-CFIRV 161 (713)
Q Consensus 100 d~iG~~~~~~~~i~~~l~~~~~~~~~gi-~~p~gvLL~GPpGtGKT~la~alA~e~~~-~~~~V 161 (713)
+.-|. ++....+..++++.-. |. ...+-++|.||+|+|||+|++.|-.-+.. +++.+
T Consensus 62 ~~~G~-~~~i~~lV~~fk~AA~----g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 62 EFYGM-EETIERLVNYFKSAAQ----GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred cccCc-HHHHHHHHHHHHHHHh----ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 34444 4444455556654322 23 33456678999999999999999886543 44444
No 446
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.55 E-value=0.088 Score=51.35 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=25.9
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+.+..-+.+.||+|+|||+|++++|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346777779999999999999999999864
No 447
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.54 E-value=0.087 Score=60.79 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.0
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeecccceeeeecce
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGER 174 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~Ges 174 (713)
.-|.|.|+||||||++++.+|..++++|+..+. .+....|.+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~--~ie~~~g~s 48 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV--EIEREIGMS 48 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH--HHHHHHCcC
Confidence 347889999999999999999999999998874 344444543
No 448
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.53 E-value=0.11 Score=55.23 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
...+++|+.||+|+|||++++++.+..
T Consensus 130 ~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 130 LARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999875
No 449
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=92.48 E-value=0.1 Score=64.70 Aligned_cols=37 Identities=43% Similarity=0.503 Sum_probs=34.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
--|++||-|.||.|||+|..|+|+++|-.++.|+.++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSe 1578 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSE 1578 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccc
Confidence 3578999999999999999999999999999999765
No 450
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.43 E-value=0.12 Score=55.61 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.4
Q ss_pred EEeeCCCCCchhHHHHHHhh----ccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVAN----RTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~----e~~~~~~~V~~~~i~ 167 (713)
+.|.|+||+|||+++++++. +.|+.+..++..+++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 57899999999999999985 456778888887776
No 451
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=92.41 E-value=1.7 Score=45.81 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=50.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
..-|.||+.|+. +..++++|.+|+.++.|-|-++. |. ..|.|+. +.++-.+++. ..++..+ ....++.
T Consensus 119 ~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~----~~g~~~~-~a~~la~- 186 (290)
T PRK07276 119 NAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE----QKGLLKT-QAELLAK- 186 (290)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH----HcCCChH-HHHHHHH-
Confidence 567889999984 56678999999999999999998 77 4556654 4444444443 2233211 1223333
Q ss_pred CCCCCHHHHHHHHH
Q psy6523 572 CPNSTGAEIRSVCT 585 (713)
Q Consensus 572 t~g~sgadi~~l~~ 585 (713)
..| +......+..
T Consensus 187 ~~~-s~~~A~~l~~ 199 (290)
T PRK07276 187 LAQ-STSEAEKLAQ 199 (290)
T ss_pred HCC-CHHHHHHHhC
Confidence 334 5655555553
No 452
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.41 E-value=0.093 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEeeCCCCCchhHHHHHHhhccCc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~ 156 (713)
.|++||||+|||+|++.||+....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 789999999999999999997654
No 453
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.36 E-value=0.076 Score=52.98 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=17.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47889999999999999998643
No 454
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.28 E-value=0.092 Score=52.91 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|+++|++..
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 35666678899999999999999999864
No 455
>KOG0990|consensus
Probab=92.27 E-value=0.081 Score=55.37 Aligned_cols=26 Identities=42% Similarity=0.574 Sum_probs=22.8
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
..|+|||||||||....|.|..+-.+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~ 89 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSP 89 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCC
Confidence 78999999999999999999866543
No 456
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.27 E-value=0.08 Score=55.49 Aligned_cols=45 Identities=22% Similarity=0.404 Sum_probs=31.7
Q ss_pred CeEEEEecCCC---CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc
Q psy6523 509 NIKVLMATNRP---DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS 556 (713)
Q Consensus 509 ~v~vi~aTN~p---~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~ 556 (713)
++.+|+|.|-+ ..|++-|+| .| ..+.++.|+.++-..|+..++..
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred eeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHhh
Confidence 57788888743 248888888 77 48899999999999999888764
No 457
>KOG0740|consensus
Probab=92.25 E-value=0.068 Score=58.70 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.5
Q ss_pred ceeeeeecCCcccccccchHHHHHHHHHHHhcccC
Q psy6523 678 TMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLL 712 (713)
Q Consensus 678 ~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~ 712 (713)
+.|+...-++|.|+||+||+.+|+-|+++|.||+.
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~l 174 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLL 174 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhccc
Confidence 45667778999999999999999999999999985
No 458
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.23 E-value=0.15 Score=49.46 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
+|+.||+|+|||.+|..+|.+.+.+.+.+.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 6899999999999999999887777777653
No 459
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.22 E-value=0.097 Score=52.89 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
+.+..-+=+.||+|||||+|+|++|+
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 44555566889999999999999996
No 460
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.15 E-value=0.1 Score=52.34 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++||+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35566668899999999999999999754
No 461
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.14 E-value=0.1 Score=56.44 Aligned_cols=29 Identities=34% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|++...-++++||||||||.|+.-+|-..
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 67878888999999999999999887543
No 462
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=92.14 E-value=0.13 Score=50.60 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.9
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.++|.+|||||++++.++...+++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 67899999999999999998876776544
No 463
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.08 E-value=0.13 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
...+++|+.||+|+|||++++|++.+.
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999865
No 464
>COG0645 Predicted kinase [General function prediction only]
Probab=92.03 E-value=0.14 Score=48.87 Aligned_cols=30 Identities=40% Similarity=0.509 Sum_probs=26.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
+.+|++|-||+|||++|+.++..+|.-.+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lr 31 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLR 31 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEe
Confidence 578999999999999999999999986554
No 465
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.03 E-value=0.11 Score=60.92 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=23.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc---cCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR---TDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~ 162 (713)
.-+|++||||||||.++.++..+ .|..++.+.
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 35889999999999988777665 355555555
No 466
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.01 E-value=0.11 Score=52.12 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|.++||+..
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35666778999999999999999999854
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.98 E-value=0.1 Score=56.50 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+...+.+|+.||+|+|||++++|+++...
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 356788999999999999999999998765
No 468
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.97 E-value=0.13 Score=55.76 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=22.5
Q ss_pred hhhccCccccccchhhhhhhhcccCcc
Q psy6523 15 NNISVKPLDIFNGHKNIARGAVANRTD 41 (713)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (713)
+|....|-|||-...++.|..+..|.-
T Consensus 38 ~~~~~~~~d~yv~~~~i~~~~l~~Gd~ 64 (380)
T PRK12608 38 RNYLPSPDDVFVPPALIRRFNLRTGDV 64 (380)
T ss_pred cCCCCCCCCeeeCHHHHHHhCCCCCCE
Confidence 456677889999999999998888877
No 469
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.97 E-value=0.11 Score=52.93 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|+++||+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35667779999999999999999999865
No 470
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.96 E-value=0.11 Score=55.70 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+++.+-++++||||+|||.++.-+|-.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 6888888999999999999999887743
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.89 E-value=0.16 Score=49.66 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
-+.+..-+.|.||+|+|||+|.++++.
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 356666788999999999999999964
No 472
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.88 E-value=0.12 Score=48.69 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.+.||+|+|||+|++++++..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45667778899999999999999999865
No 473
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=91.85 E-value=0.091 Score=50.23 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.1
Q ss_pred CCCchhHHHHHHhhccCceeEEeecccceeeeecc
Q psy6523 139 PGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 173 (713)
Q Consensus 139 pGtGKT~la~alA~e~~~~~~~V~~~~i~s~~~Ge 173 (713)
||||||++++.+|..++++|+.++. .+....|.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~--~i~~~~g~ 33 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD--EIEERTGM 33 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH--HHHHHHTS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH--HHHHHhCC
Confidence 7999999999999999999998863 44544454
No 474
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.82 E-value=0.12 Score=56.46 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+....-++|.||+|+|||+++..||...
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456778999999999999999999754
No 475
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=91.81 E-value=0.18 Score=50.44 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=27.1
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|.-|=|+|++|||||++++.++.++|.+++.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 4567899999999999999999989988654
No 476
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.81 E-value=0.12 Score=49.97 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=25.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.+..-+.|.||+|+|||+|.++|++...
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456777789999999999999999998653
No 477
>KOG2383|consensus
Probab=91.81 E-value=0.096 Score=56.36 Aligned_cols=26 Identities=38% Similarity=0.709 Sum_probs=22.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
-.+|||+.|||.-|||||||.--.-.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~ 136 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYD 136 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhh
Confidence 35699999999999999999877553
No 478
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.78 E-value=0.23 Score=52.43 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
..++-++|.||+|+|||+++..+|..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999998754
No 479
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.78 E-value=0.12 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=22.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
|.+.|++|+|||++++.|++..+..++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 568899999999999999998765433
No 480
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=91.77 E-value=0.13 Score=50.90 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=25.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.-|.+-||-|.|||+||++||++++...+.
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 457788999999999999999999966554
No 481
>PRK07667 uridine kinase; Provisional
Probab=91.73 E-value=0.18 Score=49.91 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=27.2
Q ss_pred CcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
.=|.+.|+||+|||++|+.|+..+ |.++..++..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 456788999999999999999865 345555555443
No 482
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.72 E-value=0.11 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.8
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+....++++.||+|||||.++.+++..
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 456789999999999999999998865
No 483
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.70 E-value=0.12 Score=53.02 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=24.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++||+..
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35566678899999999999999999754
No 484
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.67 E-value=0.17 Score=58.19 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc----cCceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR----TDACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e----~~~~~~~V~~~~ 165 (713)
|+++.+-+|++|+||+|||.|+..++.+ .|.+.+.|+..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 6888899999999999999999876642 266666666444
No 485
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.66 E-value=0.12 Score=52.41 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++|++..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 35666678999999999999999999854
No 486
>PTZ00035 Rad51 protein; Provisional
Probab=91.65 E-value=0.13 Score=55.58 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
|+++..-+.++||||||||.++..+|....
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence 788888899999999999999999986543
No 487
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.63 E-value=0.12 Score=49.57 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|.+.|++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46677779999999999999999999754
No 488
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.62 E-value=0.12 Score=52.06 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCc------cccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-CC-cccc
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTL------DPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM-SV-ERDI 563 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~l------D~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~-~~-~~~~ 563 (713)
..+..|.+.++......++.+|.++...... ...+. ||+.. ++++.-+.++-.++++..+... .+ .++.
T Consensus 139 ~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~ 215 (234)
T PF01637_consen 139 DFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDE 215 (234)
T ss_dssp HHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HH
T ss_pred HHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHH
Confidence 4455555555554444555555544432211 12233 48888 9999999999999999987665 11 2566
Q ss_pred cHHHHHHhCCCCC
Q psy6523 564 RFELLARLCPNST 576 (713)
Q Consensus 564 ~~~~la~~t~g~s 576 (713)
+++.+...|.|+-
T Consensus 216 ~~~~i~~~~gG~P 228 (234)
T PF01637_consen 216 DIEEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHHHTT-H
T ss_pred HHHHHHHHhCCCH
Confidence 7788888888764
No 489
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.61 E-value=0.14 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccCc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~ 156 (713)
|++.|++|+|||+|.+.+++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 788999999999999999986544
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.61 E-value=0.19 Score=56.67 Aligned_cols=40 Identities=35% Similarity=0.453 Sum_probs=31.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~ 165 (713)
|+.+..-+|++|+||+|||+|+..+|... +.+++.|+..+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 78888889999999999999999887743 34566666543
No 491
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.57 E-value=0.13 Score=52.51 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++||+..
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667778999999999999999999865
No 492
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.55 E-value=1.4 Score=46.79 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~ 552 (713)
...|.||..|+. +.+.+++|.+|+.++.|-|.++. |. ..+++..|+.++-.+.|..
T Consensus 105 ~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 105 SLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 456778888885 45677888888899999999987 65 4588888888877766654
No 493
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.54 E-value=0.13 Score=52.71 Aligned_cols=29 Identities=34% Similarity=0.558 Sum_probs=24.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++||+..
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35566668899999999999999999754
No 494
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.54 E-value=0.13 Score=51.44 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+++|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5566668999999999999999999754
No 495
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.51 E-value=0.13 Score=51.33 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+.+|+..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566678899999999999999999864
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.51 E-value=0.13 Score=50.60 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|+++|++..
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35666678899999999999999999754
No 497
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.50 E-value=0.13 Score=51.68 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|++.||+..
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35566668899999999999999999864
No 498
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=91.49 E-value=0.08 Score=52.08 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=21.7
Q ss_pred CCCCCc-EEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKG-VLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~g-vLL~GPpGtGKT~la~alA~e~~ 155 (713)
+....| .+++||.|+|||+++.||..-++
T Consensus 15 i~f~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 15 IDFSPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EE--SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEcCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 344434 58999999999999999986553
No 499
>PRK04296 thymidine kinase; Provisional
Probab=91.48 E-value=0.18 Score=49.88 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=23.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc---CceeEEe
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT---DACFIRV 161 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~---~~~~~~V 161 (713)
-+|++||||+|||+++..+|... +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 36889999999999988888754 5555544
No 500
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.44 E-value=0.13 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.9
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++++.||||+|||++.+++++...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998664
Done!