Query psy6523
Match_columns 713
No_of_seqs 452 out of 3518
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:16:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.3E-51 4.6E-56 444.6 14.6 252 90-615 139-393 (405)
2 3cf2_A TER ATPase, transitiona 100.0 5.9E-51 2E-55 475.6 16.6 301 91-713 196-499 (806)
3 4b4t_I 26S protease regulatory 100.0 1.8E-50 6.2E-55 436.3 13.7 253 90-616 173-428 (437)
4 4b4t_H 26S protease regulatory 100.0 1.2E-49 4E-54 434.0 15.8 255 90-618 200-457 (467)
5 4b4t_M 26S protease regulatory 100.0 2.2E-49 7.6E-54 433.8 14.6 251 90-614 172-425 (434)
6 4b4t_L 26S protease subunit RP 100.0 3.4E-49 1.2E-53 432.7 14.6 253 90-616 172-427 (437)
7 4b4t_K 26S protease regulatory 100.0 3.1E-48 1E-52 424.6 12.7 250 90-613 163-416 (428)
8 3cf2_A TER ATPase, transitiona 100.0 3.9E-46 1.3E-50 435.0 2.8 287 91-657 469-759 (806)
9 3hu3_A Transitional endoplasmi 100.0 5.2E-38 1.8E-42 352.2 11.4 163 491-698 322-484 (489)
10 2x8a_A Nuclear valosin-contain 100.0 1.5E-36 5E-41 316.8 11.2 140 492-650 129-273 (274)
11 3cf0_A Transitional endoplasmi 100.0 3.9E-35 1.3E-39 310.7 14.8 159 492-655 137-295 (301)
12 2ce7_A Cell division protein F 100.0 9.4E-35 3.2E-39 323.1 17.5 127 491-617 136-262 (476)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.6E-34 1.9E-38 304.4 16.2 162 490-656 129-314 (322)
14 2dhr_A FTSH; AAA+ protein, hex 100.0 2.9E-33 9.8E-38 312.9 20.6 161 491-651 151-316 (499)
15 3eie_A Vacuolar protein sortin 100.0 5.4E-34 1.8E-38 304.8 6.5 164 491-656 135-313 (322)
16 1lv7_A FTSH; alpha/beta domain 100.0 3E-32 1E-36 281.7 17.0 123 491-613 132-254 (257)
17 1ypw_A Transitional endoplasmi 100.0 2.4E-32 8.1E-37 324.4 14.9 178 491-713 322-499 (806)
18 2qp9_X Vacuolar protein sortin 100.0 7.1E-33 2.4E-37 299.9 9.0 165 490-656 167-346 (355)
19 2zan_A Vacuolar protein sortin 100.0 8.4E-32 2.9E-36 299.8 16.1 164 491-656 252-436 (444)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-31 9.3E-36 274.6 13.1 125 492-616 128-254 (262)
21 3h4m_A Proteasome-activating n 100.0 6.9E-31 2.4E-35 275.4 13.0 124 491-614 138-261 (285)
22 1ixz_A ATP-dependent metallopr 100.0 2E-30 6.7E-35 267.5 14.4 119 490-608 135-253 (254)
23 1ypw_A Transitional endoplasmi 100.0 2E-32 6.7E-37 325.1 -4.5 164 488-656 595-758 (806)
24 2r62_A Cell division protease 100.0 8.1E-31 2.8E-35 272.4 3.4 124 493-616 134-258 (268)
25 1iy2_A ATP-dependent metallopr 100.0 4.5E-29 1.5E-33 261.0 13.6 119 490-608 159-277 (278)
26 3d8b_A Fidgetin-like protein 1 100.0 9.8E-29 3.4E-33 267.7 12.6 146 490-655 200-348 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.9 2.3E-28 7.7E-33 257.9 10.0 144 492-655 139-286 (297)
28 3vfd_A Spastin; ATPase, microt 99.9 2.6E-27 8.8E-32 259.7 11.7 145 491-655 232-379 (389)
29 1mza_A Pro-granzyme K; apoptos 99.9 1.2E-25 4.2E-30 229.7 15.5 184 193-380 2-188 (240)
30 1z8g_A Serine protease hepsin; 99.9 9.6E-26 3.3E-30 245.4 14.8 194 184-380 107-306 (372)
31 1pyt_D TC, PCPA-TC, chymotryps 99.9 2.9E-25 1E-29 228.5 15.4 183 191-380 11-198 (251)
32 2oq5_A Transmembrane protease, 99.9 3.1E-25 1.1E-29 225.5 14.7 179 194-380 1-180 (232)
33 2olg_A Pro-phenoloxidase activ 99.9 4.6E-25 1.6E-29 230.5 15.1 195 183-380 12-226 (278)
34 2zgc_A Granzyme M; serine prot 99.9 1E-24 3.5E-29 222.9 15.1 179 194-380 1-180 (240)
35 1fiw_A Beta-acrosin heavy chai 99.9 7E-25 2.4E-29 230.6 14.2 184 194-380 1-197 (290)
36 4dgj_A Enteropeptidase catalyt 99.9 6.2E-25 2.1E-29 223.5 13.2 183 194-380 1-185 (235)
37 1orf_A Granzyme A; hydrolase-h 99.9 8.7E-25 3E-29 222.5 14.0 179 194-380 1-182 (234)
38 3ncl_A Suppressor of tumorigen 99.9 9.2E-25 3.2E-29 223.0 14.0 182 194-380 1-189 (241)
39 2bdy_A Thrombin; thrombin, com 99.9 6.9E-25 2.4E-29 230.6 12.9 185 192-380 29-233 (289)
40 1yc0_A Hepatocyte growth facto 99.9 1.5E-24 5.3E-29 227.2 15.3 193 184-380 21-224 (283)
41 1eq9_A Chymotrypsin; FIRE ANT, 99.9 7.9E-25 2.7E-29 221.0 12.5 175 194-380 1-176 (222)
42 3bg8_A Coagulation factor XIA 99.9 7.6E-25 2.6E-29 223.5 11.6 182 194-380 1-186 (238)
43 4f4o_C Haptoglobin; globin fol 99.9 2.2E-25 7.4E-30 239.8 7.9 188 183-380 88-294 (347)
44 2bz6_H Blood coagulation facto 99.9 6.7E-25 2.3E-29 226.2 11.1 183 194-380 1-190 (254)
45 2f91_A Hepatopancreas trypsin; 99.9 1.9E-24 6.6E-29 220.4 13.7 181 194-380 1-187 (237)
46 2jde_A Urokinase-type plasmino 99.9 1.5E-24 5E-29 226.4 12.8 195 184-380 12-219 (276)
47 1gvk_B Elastase 1, peptide inh 99.9 2.8E-24 9.6E-29 219.6 14.5 181 194-380 1-186 (240)
48 3gyl_B Prostasin; ENAC, zymoge 99.9 1.8E-24 6.2E-29 223.6 13.1 183 194-380 1-192 (261)
49 1bru_P Elastase, PPE; serine p 99.9 2.8E-24 9.7E-29 219.8 14.4 181 194-380 1-186 (241)
50 2bdg_A Kallikrein-4; serine pr 99.9 2.7E-24 9.4E-29 217.3 14.0 175 194-380 1-175 (223)
51 1lo6_A Kallikrein 6, HK6; seri 99.9 2E-24 6.8E-29 218.3 12.9 174 194-380 1-174 (223)
52 2any_A Kininogenin, plasma kal 99.9 2E-24 6.9E-29 220.8 12.8 182 194-380 1-186 (241)
53 3t15_A Ribulose bisphosphate c 99.9 4.8E-25 1.6E-29 232.2 8.3 86 492-583 127-223 (293)
54 1hj8_A Trypsin I; hydrolase, r 99.9 2.9E-24 9.8E-29 217.0 13.5 174 194-380 1-174 (222)
55 2xw9_A Complement factor D; im 99.9 5E-24 1.7E-28 216.0 15.2 180 194-380 1-181 (228)
56 1t8o_A Chymotrypsin A; chymotr 99.9 2.7E-24 9.2E-29 220.5 13.0 178 191-380 13-193 (245)
57 1fxy_A Coagulation factor XA-t 99.9 3.5E-24 1.2E-28 217.2 13.6 177 194-380 1-179 (228)
58 1m9u_A Earthworm fibrinolytic 99.9 2.7E-24 9.2E-29 219.8 12.8 183 194-380 1-189 (241)
59 2b9l_A Prophenoloxidase activa 99.9 3.3E-24 1.1E-28 234.3 14.3 194 183-380 116-330 (394)
60 2wph_S Coagulation factor IXA 99.9 1.7E-24 5.8E-29 220.4 11.0 180 194-380 1-183 (235)
61 2psx_A Kallikrein-5; zinc inhi 99.9 4.1E-24 1.4E-28 216.5 13.8 175 194-380 1-177 (227)
62 2xxl_A GRAM-positive specific 99.9 1.9E-24 6.5E-29 237.3 12.1 188 184-380 110-316 (408)
63 1ddj_A Plasminogen; catalytic 99.9 7.6E-24 2.6E-28 217.4 15.7 178 192-380 16-195 (247)
64 1azz_A Collagenase; complex (s 99.9 2.6E-24 8.9E-29 217.9 12.1 175 194-380 1-176 (226)
65 2r0l_A Hepatocyte growth facto 99.9 6.2E-24 2.1E-28 218.0 15.0 183 194-380 1-189 (248)
66 1npm_A Neuropsin; serine prote 99.9 3.6E-24 1.2E-28 216.6 12.7 177 194-380 1-178 (225)
67 3mfj_A Cationic trypsin; serin 99.9 5.2E-24 1.8E-28 215.2 13.7 174 194-380 1-175 (223)
68 1ym0_A Fibrinotic enzyme compo 99.9 3.7E-24 1.3E-28 218.3 12.8 181 194-380 1-186 (238)
69 1ao5_A Glandular kallikrein-13 99.9 3.1E-24 1.1E-28 218.9 12.1 178 194-380 1-187 (237)
70 1pq7_A Trypsin; ultra-high res 99.9 2.8E-24 9.5E-29 217.3 11.6 176 194-380 1-178 (224)
71 2zch_P Prostate-specific antig 99.9 3.9E-24 1.3E-28 218.1 12.8 178 194-380 1-187 (237)
72 1rtf_B (TC)-T-PA, two chain ti 99.9 5.7E-24 1.9E-28 218.8 13.8 183 194-380 1-201 (252)
73 1md8_A C1R complement serine p 99.9 1.2E-24 4E-29 232.9 8.8 191 184-380 76-278 (329)
74 3gov_B MAsp-1; complement, ser 99.9 8.2E-24 2.8E-28 217.1 14.5 181 194-380 1-196 (251)
75 1elv_A Complement C1S componen 99.9 2.6E-24 9E-29 230.7 11.0 186 184-380 69-275 (333)
76 1sgf_A 7S NGF, nerve growth fa 99.9 2.1E-24 7.3E-29 220.5 9.7 180 192-380 2-190 (240)
77 1cgh_A Cathepsin G; inflammati 99.9 8.3E-24 2.8E-28 213.9 13.6 175 194-380 1-179 (224)
78 2jkh_A Activated factor XA hea 99.9 4E-24 1.4E-28 218.6 11.4 178 194-380 1-183 (241)
79 1spj_A Kallikrein 1; serine pr 99.9 7.2E-24 2.5E-28 216.2 13.1 178 194-380 1-188 (238)
80 1gvz_A Kallikrein-1E2; antigen 99.9 5.9E-24 2E-28 216.7 12.1 178 194-380 1-187 (237)
81 1iau_A Granzyme B; hydrolase-h 99.9 1.1E-23 3.8E-28 213.4 13.9 176 194-380 1-181 (227)
82 1zjk_A Mannan-binding lectin s 99.9 6.4E-24 2.2E-28 233.8 13.0 189 184-380 150-348 (403)
83 2qxi_A Kallikrein-7; S1 pocket 99.9 7.1E-24 2.4E-28 214.4 12.1 173 194-380 1-174 (224)
84 3mhw_U Urokinase-type plasmino 99.9 9.7E-24 3.3E-28 216.2 13.1 185 194-380 1-196 (247)
85 1euf_A Duodenase; serine prote 99.9 1.7E-23 5.7E-28 212.0 14.6 176 194-380 1-180 (227)
86 1ton_A Tonin; hydrolase(serine 99.9 1.1E-23 3.9E-28 214.3 13.4 176 194-380 1-185 (235)
87 3nxp_A Prethrombin-1; alloster 99.9 3.3E-24 1.1E-28 237.3 9.9 186 191-380 163-368 (424)
88 2aiq_A Protein C activator; sn 99.9 8.4E-24 2.9E-28 214.8 12.0 174 194-380 1-175 (231)
89 1aut_C Activated protein C; se 99.9 7.9E-24 2.7E-28 217.7 11.4 178 194-380 1-189 (250)
90 3tvj_B Mannan-binding lectin s 99.9 1E-23 3.6E-28 215.1 12.2 179 194-380 1-187 (242)
91 1elt_A Elastase; serine protei 99.9 2E-23 7E-28 212.6 13.9 180 194-380 1-185 (236)
92 4ag1_A Chymase; hydrolase-de n 99.9 3.2E-23 1.1E-27 209.6 14.4 175 194-380 1-180 (226)
93 1a7s_A Heparin binding protein 99.9 2.8E-23 9.4E-28 210.1 13.4 172 194-380 1-173 (225)
94 4i8h_A Cationic trypsin, beta- 99.9 3E-23 1E-27 209.4 13.3 174 194-380 1-175 (223)
95 4e7n_A Snake-venom thrombin-li 99.9 2.8E-23 9.7E-28 211.5 13.3 178 194-380 1-182 (238)
96 2qy0_B Complement C1R subcompo 99.9 4.7E-24 1.6E-28 218.1 7.2 181 194-380 1-189 (242)
97 3s9c_A Vipera russelli protein 99.9 3.1E-23 1E-27 210.8 12.9 176 194-380 1-178 (234)
98 1gpz_A Complement C1R componen 99.9 8.4E-24 2.9E-28 232.5 9.1 191 184-380 144-346 (399)
99 2f9n_A Alpha I tryptase; serin 99.9 2.1E-23 7.3E-28 213.7 11.3 178 194-380 1-192 (245)
100 3s69_A Thrombin-like enzyme de 99.9 4.3E-23 1.5E-27 209.6 12.8 177 194-380 1-178 (234)
101 3fzz_A Granzyme C; hydrolase, 99.9 4.9E-23 1.7E-27 208.3 13.0 177 194-380 1-182 (227)
102 3h7t_A Group 3 allergen smipp- 99.9 3E-23 1E-27 210.8 11.4 178 194-380 1-184 (235)
103 3rp2_A RAT MAST cell protease 99.9 5E-23 1.7E-27 207.8 12.9 175 194-380 1-180 (224)
104 2vnt_A Urokinase-type plasmino 99.9 7.3E-23 2.5E-27 213.4 14.3 196 183-380 11-219 (276)
105 1fon_A Procarboxypeptidase A-S 99.9 2.8E-23 9.7E-28 212.1 10.3 177 196-380 1-185 (240)
106 2z7f_E Leukocyte elastase; ser 99.9 6.8E-23 2.3E-27 206.2 12.2 170 194-380 1-171 (218)
107 2f83_A Coagulation factor XI; 99.9 5E-23 1.7E-27 238.1 12.6 191 184-380 379-573 (625)
108 3rm2_H Thrombin heavy chain; s 99.9 4.8E-23 1.6E-27 212.5 10.5 183 194-380 1-203 (259)
109 1si5_H Scatter factor, hepatoc 99.9 1.6E-22 5.6E-27 206.5 13.7 175 194-380 1-177 (240)
110 3f1s_B Vitamin K-dependent pro 99.9 7.3E-23 2.5E-27 214.4 9.7 170 184-372 48-222 (283)
111 2hlc_A Collagenase; serine pro 99.9 1.7E-22 6E-27 204.9 11.9 171 194-380 1-178 (230)
112 2asu_B Hepatocyte growth facto 99.9 2.9E-22 1E-26 203.9 13.3 172 194-380 1-176 (234)
113 1yph_C Chymotrypsin A, chain B 99.9 6.8E-22 2.3E-26 182.6 11.5 128 194-329 1-130 (131)
114 3beu_A Trypsin, SGT; beta shee 99.9 5.2E-22 1.8E-26 200.4 11.3 171 194-380 1-171 (224)
115 1fuj_A PR3, myeloblastin; hydr 99.9 9.5E-22 3.3E-26 198.1 13.1 170 194-380 1-174 (221)
116 3h7o_A Group 3 allergen smipp- 99.9 4.5E-22 1.5E-26 201.3 10.3 176 195-380 1-181 (228)
117 4dur_A Plasminogen, serine pro 99.9 1.9E-21 6.6E-26 228.3 15.3 187 183-380 546-739 (791)
118 2xrc_A Human complement factor 99.8 9E-22 3.1E-26 225.0 7.8 189 183-380 307-505 (565)
119 2odp_A Complement C2; C3/C5 co 99.8 6.1E-22 2.1E-26 224.6 4.8 225 144-380 177-434 (509)
120 3h5c_B Vitamin K-dependent pro 99.8 6.2E-21 2.1E-25 203.0 10.6 162 197-372 97-263 (317)
121 2c9o_A RUVB-like 1; hexameric 99.8 8.1E-23 2.8E-27 228.4 -7.6 101 96-218 34-139 (456)
122 1rrk_A Complement factor B; BB 99.8 6.1E-21 2.1E-25 215.6 5.0 222 144-380 169-430 (497)
123 3hrz_D Complement factor B; se 99.8 2.2E-19 7.5E-24 212.8 11.1 235 130-380 395-672 (741)
124 1g41_A Heat shock protein HSLU 99.7 1.2E-18 4.2E-23 191.0 6.1 61 490-552 128-190 (444)
125 3syl_A Protein CBBX; photosynt 99.6 6.1E-17 2.1E-21 171.1 4.0 99 492-594 154-265 (309)
126 3uk6_A RUVB-like 2; hexameric 99.6 5.9E-16 2E-20 167.6 10.8 92 517-611 238-330 (368)
127 3m6a_A ATP-dependent protease 99.6 5.7E-16 1.9E-20 176.3 7.4 101 508-611 223-341 (543)
128 1p3c_A Glutamyl-endopeptidase; 99.6 1.1E-16 3.6E-21 160.4 0.7 149 190-354 7-160 (215)
129 3pfi_A Holliday junction ATP-d 99.6 4.2E-14 1.4E-18 151.3 17.7 100 509-611 154-254 (338)
130 3kw6_A 26S protease regulatory 99.5 7.8E-15 2.7E-19 122.2 8.0 76 539-614 1-76 (78)
131 2krk_A 26S protease regulatory 99.5 9.5E-15 3.2E-19 123.7 7.6 77 538-614 8-84 (86)
132 3pxg_A Negative regulator of g 99.5 2.3E-15 7.7E-20 168.5 4.5 110 495-611 281-406 (468)
133 3pxi_A Negative regulator of g 99.5 2.9E-14 1E-18 169.1 12.8 93 495-594 281-388 (758)
134 1d2n_A N-ethylmaleimide-sensit 99.5 8.7E-15 3E-19 151.9 6.6 93 492-589 149-247 (272)
135 1ofh_A ATP-dependent HSL prote 99.5 4.5E-14 1.5E-18 148.7 10.8 116 493-610 144-298 (310)
136 1hqc_A RUVB; extended AAA-ATPa 99.5 1.4E-13 4.7E-18 146.2 13.8 100 509-611 138-238 (324)
137 3vlf_B 26S protease regulatory 99.5 7.4E-14 2.5E-18 118.9 7.6 76 542-617 2-77 (88)
138 3cp7_A Alkaline serine proteas 99.5 1.3E-14 4.6E-19 145.5 3.1 120 202-329 3-134 (218)
139 2r44_A Uncharacterized protein 99.5 7.9E-13 2.7E-17 141.0 16.6 104 508-613 149-299 (331)
140 1r6b_X CLPA protein; AAA+, N-t 99.4 2E-13 6.7E-18 162.1 10.0 81 507-591 313-409 (758)
141 2pka_A Kallikrein A; serine pr 99.4 2.3E-13 7.7E-18 113.9 5.8 79 194-278 1-79 (80)
142 2chg_A Replication factor C sm 99.4 7.1E-12 2.4E-16 124.3 16.5 93 508-609 131-224 (226)
143 3hws_A ATP-dependent CLP prote 99.4 1.5E-13 5E-18 148.8 4.5 46 128-173 49-95 (363)
144 3aji_B S6C, proteasome (prosom 99.4 3.8E-13 1.3E-17 113.3 5.8 73 542-614 2-74 (83)
145 1sxj_A Activator 1 95 kDa subu 99.4 3.3E-12 1.1E-16 144.7 15.4 83 90-173 30-120 (516)
146 3bos_A Putative DNA replicatio 99.4 2.5E-12 8.6E-17 129.7 12.8 95 511-609 141-241 (242)
147 1g8p_A Magnesium-chelatase 38 99.4 1E-11 3.4E-16 133.1 16.9 103 509-614 187-325 (350)
148 2v1u_A Cell division control p 99.3 5.2E-12 1.8E-16 136.9 14.3 117 492-612 150-277 (387)
149 3pvs_A Replication-associated 99.3 1.7E-12 5.9E-17 143.9 10.2 108 496-611 125-244 (447)
150 1l8q_A Chromosomal replication 99.3 3.6E-12 1.2E-16 135.5 12.3 100 508-612 131-241 (324)
151 4b4t_H 26S protease regulatory 99.3 2.9E-13 1E-17 147.8 3.0 205 380-713 27-231 (467)
152 2z4s_A Chromosomal replication 99.3 2.6E-12 9E-17 142.4 10.3 99 509-612 228-333 (440)
153 1njg_A DNA polymerase III subu 99.3 5.5E-11 1.9E-15 119.3 18.0 105 494-608 143-248 (250)
154 1in4_A RUVB, holliday junction 99.3 5E-11 1.7E-15 127.4 18.3 101 509-612 150-251 (334)
155 2dzn_B 26S protease regulatory 99.3 1.2E-12 4E-17 110.0 2.4 69 544-612 1-69 (82)
156 2pka_B Kallikrein A; serine pr 99.2 9.8E-12 3.3E-16 117.3 7.5 96 282-380 4-102 (152)
157 1qvr_A CLPB protein; coiled co 99.2 8.8E-12 3E-16 149.5 8.9 83 508-593 298-394 (854)
158 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 3.1E-11 1.1E-15 135.0 12.5 97 511-611 151-285 (500)
159 3u61_B DNA polymerase accessor 99.2 5.6E-11 1.9E-15 126.2 13.0 67 90-165 17-83 (324)
160 4fcw_A Chaperone protein CLPB; 99.2 1.8E-11 6.1E-16 129.0 9.0 84 509-594 160-281 (311)
161 1um8_A ATP-dependent CLP prote 99.2 1E-11 3.5E-16 134.9 7.1 46 128-173 70-116 (376)
162 2qby_B CDC6 homolog 3, cell di 99.2 2.4E-11 8.2E-16 131.8 10.1 100 508-612 163-271 (384)
163 1agj_A Epidermolytic toxin A; 99.2 1.2E-11 3.9E-16 126.1 6.5 137 200-347 36-179 (242)
164 1arb_A Achromobacter protease 99.2 9.3E-12 3.2E-16 128.3 5.0 146 210-380 27-192 (268)
165 3f9v_A Minichromosome maintena 99.2 3.7E-11 1.2E-15 137.9 10.2 103 508-613 433-589 (595)
166 2chq_A Replication factor C sm 99.2 4.5E-10 1.5E-14 118.3 16.6 105 494-609 119-224 (319)
167 3pxi_A Negative regulator of g 99.2 1.3E-10 4.4E-15 137.8 13.6 84 508-593 619-726 (758)
168 1sxj_D Activator 1 41 kDa subu 99.1 3.2E-10 1.1E-14 121.4 14.9 97 509-609 163-261 (353)
169 1r6b_X CLPA protein; AAA+, N-t 99.1 7.3E-11 2.5E-15 140.0 9.7 85 508-594 597-718 (758)
170 1jr3_A DNA polymerase III subu 99.1 2E-09 6.7E-14 116.2 19.8 105 494-608 136-241 (373)
171 1jbk_A CLPB protein; beta barr 99.1 2.4E-12 8.2E-17 124.6 -3.1 67 91-167 14-90 (195)
172 2o8l_A V8 protease, taphylococ 99.1 1E-10 3.5E-15 121.3 8.4 117 201-329 13-138 (274)
173 1wcz_A Glutamyl endopeptidase; 99.1 7.3E-11 2.5E-15 122.1 6.8 117 201-329 13-138 (268)
174 1qtf_A Exfoliative toxin B; se 99.1 9E-11 3.1E-15 119.8 6.9 121 201-328 30-158 (246)
175 2qby_A CDC6 homolog 1, cell di 99.1 1.9E-10 6.5E-15 124.3 9.4 115 493-612 148-273 (386)
176 1fnn_A CDC6P, cell division co 99.0 2.5E-09 8.4E-14 115.9 15.5 117 493-612 141-275 (389)
177 1iqp_A RFCS; clamp loader, ext 99.0 3.3E-09 1.1E-13 112.1 15.6 92 508-608 139-231 (327)
178 2p65_A Hypothetical protein PF 99.0 3E-11 1E-15 116.5 -2.3 66 92-167 15-90 (187)
179 1sxj_B Activator 1 37 kDa subu 98.9 1.1E-08 3.6E-13 107.9 15.7 94 508-610 136-230 (323)
180 3te6_A Regulatory protein SIR3 98.9 3.8E-10 1.3E-14 118.8 4.4 49 507-557 161-214 (318)
181 1qvr_A CLPB protein; coiled co 98.9 1.4E-09 5E-14 130.3 9.2 101 492-594 675-822 (854)
182 2vid_A Serine protease SPLB; h 98.9 7.1E-10 2.4E-14 109.4 5.3 110 200-329 8-125 (204)
183 4b4t_J 26S protease regulatory 98.9 8.1E-10 2.8E-14 119.2 3.8 76 638-713 95-170 (405)
184 2as9_A Serine protease; trypsi 98.8 1.4E-09 4.9E-14 108.1 5.0 108 201-328 10-125 (210)
185 2w7s_A Serine protease SPLA; h 98.8 1.3E-09 4.4E-14 107.4 4.6 109 200-327 8-120 (200)
186 1sxj_E Activator 1 40 kDa subu 98.8 4.5E-08 1.5E-12 104.8 14.8 77 509-589 164-242 (354)
187 2bjv_A PSP operon transcriptio 98.8 1.6E-08 5.6E-13 103.9 10.4 63 97-167 4-69 (265)
188 1sxj_C Activator 1 40 kDa subu 98.8 1.9E-08 6.5E-13 107.5 10.8 63 508-574 139-203 (340)
189 1ojl_A Transcriptional regulat 98.7 2.3E-08 7.7E-13 105.2 9.6 41 128-168 23-66 (304)
190 4akg_A Glutathione S-transfera 98.6 3.6E-08 1.2E-12 128.2 9.7 46 509-557 1384-1434(2695)
191 1a5t_A Delta prime, HOLB; zinc 98.6 3.7E-07 1.3E-11 97.2 15.2 85 493-587 124-208 (334)
192 3cmw_A Protein RECA, recombina 98.6 2.5E-09 8.6E-14 133.3 -2.7 73 95-167 1016-1122(1706)
193 4b4t_I 26S protease regulatory 98.6 2.3E-08 7.8E-13 108.3 3.5 76 638-713 129-204 (437)
194 4b4t_L 26S protease subunit RP 98.5 3.8E-08 1.3E-12 107.7 4.2 75 639-713 129-203 (437)
195 3k1j_A LON protease, ATP-depen 98.5 3.6E-07 1.2E-11 105.2 11.7 99 509-610 252-374 (604)
196 1w5s_A Origin recognition comp 98.4 1.8E-07 6.1E-12 102.1 6.7 102 508-612 178-294 (412)
197 4b4t_M 26S protease regulatory 98.4 6.8E-08 2.3E-12 105.7 2.7 73 641-713 131-203 (434)
198 4b4t_K 26S protease regulatory 98.4 1.4E-07 4.9E-12 103.0 3.5 75 639-713 120-194 (428)
199 2gno_A DNA polymerase III, gam 98.2 2.2E-06 7.4E-11 90.0 9.2 56 492-554 97-152 (305)
200 3cmw_A Protein RECA, recombina 98.2 1.2E-08 4.1E-13 127.3 -9.4 42 126-167 728-772 (1706)
201 3n70_A Transport activator; si 98.0 7.9E-06 2.7E-10 75.7 6.0 39 129-168 23-64 (145)
202 3ec2_A DNA replication protein 97.9 4.1E-06 1.4E-10 80.5 3.8 70 95-170 6-82 (180)
203 3co5_A Putative two-component 97.9 2.6E-06 8.9E-11 78.9 2.2 39 129-168 26-64 (143)
204 2w58_A DNAI, primosome compone 97.9 8.6E-06 2.9E-10 79.6 5.1 70 95-169 21-96 (202)
205 3k6y_A Serine protease, possib 97.7 4.1E-05 1.4E-09 77.1 7.2 95 205-329 41-140 (237)
206 1tue_A Replication protein E1; 97.5 3.7E-05 1.3E-09 75.0 2.7 32 126-157 54-85 (212)
207 2qgz_A Helicase loader, putati 97.5 4.9E-05 1.7E-09 79.7 3.6 70 95-170 120-196 (308)
208 1u0j_A DNA replication protein 97.5 5.5E-05 1.9E-09 77.0 3.7 29 128-156 102-130 (267)
209 3f8t_A Predicted ATPase involv 97.4 0.0024 8.1E-08 69.8 16.5 106 509-617 339-489 (506)
210 1y8t_A Hypothetical protein RV 97.4 0.00016 5.4E-09 76.4 6.6 101 203-327 14-124 (324)
211 2qa9_E Streptogrisin-B; chymot 97.4 7.9E-05 2.7E-09 72.0 3.8 120 217-368 12-136 (185)
212 4akg_A Glutathione S-transfera 97.3 0.00017 5.9E-09 94.3 6.6 39 130-168 645-683 (2695)
213 1ny5_A Transcriptional regulat 97.3 0.00039 1.3E-08 75.3 8.0 40 129-168 159-201 (387)
214 3tjo_A Serine protease HTRA1; 97.3 0.00023 7.8E-09 71.4 5.7 85 217-328 63-148 (231)
215 1l1j_A Heat shock protease HTR 97.2 0.00019 6.6E-09 72.3 4.7 87 216-328 55-142 (239)
216 3qo6_A Protease DO-like 1, chl 97.2 0.00029 1E-08 75.1 5.2 88 217-330 53-141 (348)
217 3vkg_A Dynein heavy chain, cyt 97.1 0.00077 2.6E-08 88.9 9.7 46 508-556 1421-1471(3245)
218 3vaa_A Shikimate kinase, SK; s 97.1 0.00022 7.7E-09 69.4 3.3 37 126-162 21-57 (199)
219 2kjq_A DNAA-related protein; s 97.0 0.00035 1.2E-08 64.9 4.1 39 129-167 35-76 (149)
220 1qhx_A CPT, protein (chloramph 97.0 0.00041 1.4E-08 65.9 4.4 37 130-166 3-39 (178)
221 3lgi_A Protease DEGS; stress-s 97.0 0.0013 4.6E-08 65.9 8.1 85 217-328 53-138 (237)
222 3trf_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 66.5 3.7 34 129-162 4-37 (185)
223 2rhm_A Putative kinase; P-loop 96.9 0.00044 1.5E-08 66.5 3.4 36 126-161 1-36 (193)
224 2sga_A Proteinase A; hydrolase 96.9 0.00021 7.1E-09 68.7 0.9 81 217-328 12-101 (181)
225 1zp6_A Hypothetical protein AT 96.8 0.00068 2.3E-08 65.1 3.7 40 127-166 6-45 (191)
226 3iij_A Coilin-interacting nucl 96.8 0.00067 2.3E-08 64.7 3.6 35 128-162 9-43 (180)
227 1lcy_A HTRA2 serine protease; 96.8 0.0013 4.4E-08 69.4 5.9 87 216-329 46-133 (325)
228 1y63_A LMAJ004144AAA protein; 96.7 0.00075 2.6E-08 64.8 3.6 33 130-162 10-43 (184)
229 1svm_A Large T antigen; AAA+ f 96.7 0.00082 2.8E-08 72.2 3.8 38 125-162 164-201 (377)
230 1kag_A SKI, shikimate kinase I 96.6 0.0012 4.1E-08 62.3 4.2 31 130-160 4-34 (173)
231 1via_A Shikimate kinase; struc 96.6 0.00099 3.4E-08 63.2 3.6 31 131-161 5-35 (175)
232 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00038 1.3E-08 72.7 0.5 37 125-161 118-156 (331)
233 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.5E-08 63.6 3.1 31 132-162 4-34 (184)
234 3kb2_A SPBC2 prophage-derived 96.5 0.0011 3.9E-08 62.2 3.3 31 132-162 3-33 (173)
235 1gvn_B Zeta; postsegregational 96.5 0.0025 8.5E-08 66.0 6.0 39 128-166 31-69 (287)
236 2c9o_A RUVB-like 1; hexameric 96.5 0.0039 1.3E-07 68.9 8.0 114 492-611 310-437 (456)
237 2p5t_B PEZT; postsegregational 96.5 0.0017 5.7E-08 65.8 4.5 40 127-166 29-68 (253)
238 3num_A Serine protease HTRA1; 96.5 0.0043 1.5E-07 65.5 7.8 86 217-329 46-132 (332)
239 1te0_A Protease DEGS; two doma 96.5 0.0033 1.1E-07 66.0 6.6 85 216-327 41-126 (318)
240 1zd8_A GTP:AMP phosphotransfer 96.4 0.0013 4.4E-08 65.3 3.1 34 128-161 5-38 (227)
241 2cdn_A Adenylate kinase; phosp 96.4 0.0016 5.3E-08 63.3 3.6 32 130-161 20-51 (201)
242 1zuh_A Shikimate kinase; alpha 96.4 0.0017 5.6E-08 61.1 3.4 32 130-161 7-38 (168)
243 1ly1_A Polynucleotide kinase; 96.4 0.0016 5.6E-08 61.6 3.4 31 130-160 2-33 (181)
244 3umf_A Adenylate kinase; rossm 96.4 0.0016 5.5E-08 64.4 3.4 39 127-167 26-64 (217)
245 2ze6_A Isopentenyl transferase 96.4 0.0017 5.8E-08 65.9 3.5 32 132-163 3-34 (253)
246 2c95_A Adenylate kinase 1; tra 96.4 0.0014 4.8E-08 63.1 2.8 35 128-162 7-41 (196)
247 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6E-08 62.1 3.5 32 130-161 3-34 (196)
248 1aky_A Adenylate kinase; ATP:A 96.4 0.002 7E-08 63.5 4.0 33 129-161 3-35 (220)
249 3lw7_A Adenylate kinase relate 96.3 0.0016 5.6E-08 61.0 3.1 29 132-161 3-31 (179)
250 1e6c_A Shikimate kinase; phosp 96.3 0.0022 7.4E-08 60.4 3.9 31 131-161 3-33 (173)
251 2vli_A Antibiotic resistance p 96.3 0.0016 5.6E-08 61.9 3.0 30 130-159 5-34 (183)
252 1qf9_A UMP/CMP kinase, protein 96.3 0.002 6.7E-08 61.7 3.3 33 129-161 5-37 (194)
253 3vkg_A Dynein heavy chain, cyt 96.3 0.0036 1.2E-07 82.8 6.7 38 130-167 604-641 (3245)
254 3cm0_A Adenylate kinase; ATP-b 96.3 0.0018 6.1E-08 61.8 2.9 31 131-161 5-35 (186)
255 1ak2_A Adenylate kinase isoenz 96.2 0.0026 8.8E-08 63.5 4.1 32 130-161 16-47 (233)
256 3t61_A Gluconokinase; PSI-biol 96.2 0.0027 9.2E-08 61.7 3.9 31 130-160 18-48 (202)
257 3dl0_A Adenylate kinase; phosp 96.2 0.0021 7E-08 63.2 3.0 29 133-161 3-31 (216)
258 3tlx_A Adenylate kinase 2; str 96.2 0.0022 7.4E-08 64.6 3.2 34 128-161 27-60 (243)
259 3be4_A Adenylate kinase; malar 96.2 0.0021 7.1E-08 63.4 3.0 32 130-161 5-36 (217)
260 1zak_A Adenylate kinase; ATP:A 96.1 0.0018 6.1E-08 64.0 2.3 33 129-161 4-36 (222)
261 4eun_A Thermoresistant glucoki 96.1 0.0031 1.1E-07 61.2 4.0 32 128-159 27-58 (200)
262 1ukz_A Uridylate kinase; trans 96.1 0.0026 8.9E-08 61.7 3.3 34 129-162 14-47 (203)
263 1kht_A Adenylate kinase; phosp 96.1 0.0021 7.2E-08 61.4 2.6 31 130-160 3-38 (192)
264 3fb4_A Adenylate kinase; psych 96.1 0.0022 7.7E-08 62.9 2.8 29 133-161 3-31 (216)
265 2bwj_A Adenylate kinase 5; pho 96.1 0.0023 8E-08 61.6 2.8 34 129-162 11-44 (199)
266 1knq_A Gluconate kinase; ALFA/ 96.1 0.0032 1.1E-07 59.5 3.6 31 130-160 8-38 (175)
267 2pt5_A Shikimate kinase, SK; a 96.1 0.0031 1.1E-07 59.0 3.4 30 132-161 2-31 (168)
268 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0027 9.1E-08 64.6 3.1 37 130-166 4-43 (260)
269 3sr0_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 61.5 3.5 33 133-167 3-35 (206)
270 3crm_A TRNA delta(2)-isopenten 95.9 0.0039 1.3E-07 65.3 3.8 37 130-166 5-41 (323)
271 2cvh_A DNA repair and recombin 95.9 0.006 2.1E-07 59.6 4.8 38 126-163 16-53 (220)
272 1e4v_A Adenylate kinase; trans 95.7 0.004 1.4E-07 61.1 2.7 29 133-161 3-31 (214)
273 2v54_A DTMP kinase, thymidylat 95.7 0.0076 2.6E-07 58.2 4.5 34 129-162 3-37 (204)
274 2pez_A Bifunctional 3'-phospho 95.7 0.0058 2E-07 58.0 3.5 36 129-164 4-42 (179)
275 2xb4_A Adenylate kinase; ATP-b 95.6 0.0059 2E-07 60.4 3.6 29 133-161 3-31 (223)
276 1cke_A CK, MSSA, protein (cyti 95.6 0.007 2.4E-07 59.6 4.0 30 131-160 6-35 (227)
277 3nwj_A ATSK2; P loop, shikimat 95.6 0.0046 1.6E-07 62.5 2.7 33 130-162 48-80 (250)
278 3r20_A Cytidylate kinase; stru 95.6 0.0068 2.3E-07 60.5 3.8 31 130-160 9-39 (233)
279 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0025 8.7E-08 67.4 0.7 33 131-163 25-57 (359)
280 1jr3_D DNA polymerase III, del 95.6 0.031 1.1E-06 58.9 9.1 107 494-609 94-207 (343)
281 2bbw_A Adenylate kinase 4, AK4 95.5 0.0067 2.3E-07 60.9 3.6 32 129-160 26-57 (246)
282 2if2_A Dephospho-COA kinase; a 95.5 0.0069 2.4E-07 58.7 3.5 30 132-162 3-32 (204)
283 1nks_A Adenylate kinase; therm 95.5 0.0044 1.5E-07 59.2 2.0 24 132-155 3-26 (194)
284 3uie_A Adenylyl-sulfate kinase 95.5 0.0065 2.2E-07 58.9 3.2 36 128-163 23-61 (200)
285 2jaq_A Deoxyguanosine kinase; 95.5 0.0069 2.4E-07 58.4 3.3 27 133-159 3-29 (205)
286 3cmu_A Protein RECA, recombina 95.5 0.0042 1.4E-07 79.0 2.1 41 126-166 1423-1466(2050)
287 2pbr_A DTMP kinase, thymidylat 95.5 0.008 2.7E-07 57.4 3.7 30 133-162 3-35 (195)
288 1jjv_A Dephospho-COA kinase; P 95.4 0.0083 2.8E-07 58.3 3.7 28 132-160 4-31 (206)
289 2z0h_A DTMP kinase, thymidylat 95.4 0.0093 3.2E-07 57.2 3.9 30 133-162 3-35 (197)
290 2fna_A Conserved hypothetical 95.4 0.016 5.4E-07 60.9 6.0 55 530-586 198-252 (357)
291 1n0w_A DNA repair protein RAD5 95.3 0.012 4E-07 58.5 4.6 28 126-153 20-47 (243)
292 2wwf_A Thymidilate kinase, put 95.3 0.0044 1.5E-07 60.4 1.3 33 129-161 9-41 (212)
293 3ake_A Cytidylate kinase; CMP 95.3 0.0088 3E-07 57.9 3.4 31 132-162 4-34 (208)
294 3hr8_A Protein RECA; alpha and 95.2 0.0099 3.4E-07 63.2 3.6 40 126-165 57-99 (356)
295 1nn5_A Similar to deoxythymidy 95.2 0.0052 1.8E-07 59.9 1.3 33 129-161 8-40 (215)
296 2qt1_A Nicotinamide riboside k 95.1 0.011 3.6E-07 57.6 3.5 35 128-162 19-54 (207)
297 1uf9_A TT1252 protein; P-loop, 95.1 0.011 3.8E-07 56.9 3.5 31 130-161 8-38 (203)
298 2plr_A DTMP kinase, probable t 95.0 0.014 4.7E-07 56.6 3.9 28 130-157 4-31 (213)
299 3a8t_A Adenylate isopentenyltr 95.0 0.014 4.7E-07 61.4 3.9 35 130-164 40-74 (339)
300 2grj_A Dephospho-COA kinase; T 95.0 0.013 4.5E-07 56.6 3.5 31 132-162 14-44 (192)
301 3foz_A TRNA delta(2)-isopenten 94.9 0.016 5.4E-07 60.1 4.0 38 129-166 9-46 (316)
302 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.011 3.9E-07 58.0 2.9 28 126-153 19-46 (235)
303 1ye8_A Protein THEP1, hypothet 94.9 0.013 4.4E-07 55.9 3.1 24 133-156 3-26 (178)
304 1uj2_A Uridine-cytidine kinase 94.9 0.013 4.6E-07 59.0 3.4 31 128-158 20-50 (252)
305 1vht_A Dephospho-COA kinase; s 94.9 0.017 5.8E-07 56.6 4.1 31 130-161 4-34 (218)
306 2z43_A DNA repair and recombin 94.9 0.015 5.3E-07 61.0 4.0 29 126-154 103-131 (324)
307 2h92_A Cytidylate kinase; ross 94.8 0.017 5.9E-07 56.5 4.1 33 130-162 3-35 (219)
308 1q3t_A Cytidylate kinase; nucl 94.8 0.017 5.8E-07 57.5 4.1 33 128-160 14-46 (236)
309 2qp9_X Vacuolar protein sortin 94.8 0.0065 2.2E-07 64.8 1.0 41 673-713 33-73 (355)
310 3zvl_A Bifunctional polynucleo 94.8 0.016 5.3E-07 63.2 3.9 32 129-160 257-288 (416)
311 2qor_A Guanylate kinase; phosp 94.8 0.016 5.6E-07 56.2 3.6 30 126-155 8-37 (204)
312 2j41_A Guanylate kinase; GMP, 94.7 0.016 5.4E-07 56.0 3.4 28 127-154 3-30 (207)
313 3sti_A Protease DEGQ; serine p 94.7 0.038 1.3E-06 55.5 6.1 84 216-326 62-147 (245)
314 2qmh_A HPR kinase/phosphorylas 94.6 0.018 6.2E-07 55.7 3.5 34 129-163 33-66 (205)
315 2yvu_A Probable adenylyl-sulfa 94.6 0.014 5E-07 55.6 2.8 36 128-163 11-49 (186)
316 2zan_A Vacuolar protein sortin 94.6 0.011 3.7E-07 65.1 2.1 36 678-713 121-156 (444)
317 1ltq_A Polynucleotide kinase; 94.6 0.016 5.5E-07 59.8 3.2 32 130-161 2-34 (301)
318 1u94_A RECA protein, recombina 94.6 0.02 6.9E-07 60.9 4.0 39 126-164 59-100 (356)
319 4e22_A Cytidylate kinase; P-lo 94.5 0.024 8.2E-07 57.2 4.3 31 130-160 27-57 (252)
320 1v5w_A DMC1, meiotic recombina 94.5 0.025 8.7E-07 59.8 4.6 28 126-153 118-145 (343)
321 2dr3_A UPF0273 protein PH0284; 94.5 0.021 7.1E-07 56.7 3.7 38 126-163 19-59 (247)
322 2qen_A Walker-type ATPase; unk 94.4 0.051 1.7E-06 56.8 6.8 55 530-585 192-247 (350)
323 2bdt_A BH3686; alpha-beta prot 94.4 0.021 7.3E-07 54.5 3.5 24 132-155 4-27 (189)
324 3fdi_A Uncharacterized protein 94.4 0.019 6.5E-07 55.9 3.0 29 132-160 8-36 (201)
325 2ehv_A Hypothetical protein PH 94.4 0.018 6E-07 57.4 2.8 27 126-152 26-52 (251)
326 4a74_A DNA repair and recombin 94.3 0.014 4.8E-07 57.4 2.1 29 126-154 21-49 (231)
327 2zr9_A Protein RECA, recombina 94.3 0.023 7.8E-07 60.4 3.6 39 126-164 57-98 (349)
328 2f6r_A COA synthase, bifunctio 94.2 0.023 7.8E-07 58.4 3.3 31 130-161 75-105 (281)
329 3c8u_A Fructokinase; YP_612366 94.1 0.035 1.2E-06 54.0 4.4 28 128-155 20-47 (208)
330 2zts_A Putative uncharacterize 94.1 0.028 9.7E-07 55.8 3.8 38 126-163 26-67 (251)
331 1xp8_A RECA protein, recombina 94.1 0.026 9E-07 60.2 3.6 39 126-164 70-111 (366)
332 3exa_A TRNA delta(2)-isopenten 94.0 0.032 1.1E-06 58.0 3.9 34 131-164 4-37 (322)
333 3tau_A Guanylate kinase, GMP k 93.9 0.031 1.1E-06 54.5 3.6 27 129-155 7-33 (208)
334 1m7g_A Adenylylsulfate kinase; 93.9 0.023 7.8E-07 55.5 2.6 36 128-163 23-62 (211)
335 3d3q_A TRNA delta(2)-isopenten 93.9 0.031 1.1E-06 58.9 3.6 33 131-163 8-40 (340)
336 3tr0_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 53.7 3.4 27 128-154 5-31 (205)
337 1pzn_A RAD51, DNA repair and r 93.8 0.033 1.1E-06 59.1 3.6 30 125-154 126-155 (349)
338 1kgd_A CASK, peripheral plasma 93.7 0.035 1.2E-06 52.7 3.4 26 130-155 5-30 (180)
339 3io5_A Recombination and repai 93.7 0.036 1.2E-06 57.6 3.7 39 126-165 25-68 (333)
340 2r2a_A Uncharacterized protein 93.7 0.041 1.4E-06 53.4 3.9 35 508-544 122-156 (199)
341 3asz_A Uridine kinase; cytidin 93.6 0.03 1E-06 54.4 2.6 27 129-155 5-31 (211)
342 1nlf_A Regulatory protein REPA 93.5 0.027 9.4E-07 57.5 2.5 28 126-153 26-53 (279)
343 1htw_A HI0065; nucleotide-bind 93.5 0.034 1.2E-06 51.9 2.9 28 127-154 30-57 (158)
344 3b9q_A Chloroplast SRP recepto 93.5 0.069 2.4E-06 55.4 5.4 29 126-154 96-124 (302)
345 1cr0_A DNA primase/helicase; R 93.4 0.036 1.2E-06 57.1 3.2 30 125-154 30-59 (296)
346 3gmt_A Adenylate kinase; ssgci 93.4 0.029 9.9E-07 55.7 2.2 28 134-161 12-39 (230)
347 2i1q_A DNA repair and recombin 93.4 0.04 1.4E-06 57.6 3.4 28 126-153 94-121 (322)
348 4gp7_A Metallophosphoesterase; 93.3 0.026 8.9E-07 53.2 1.7 25 127-151 6-30 (171)
349 1vma_A Cell division protein F 93.3 0.076 2.6E-06 55.2 5.3 47 107-154 82-128 (306)
350 3eph_A TRNA isopentenyltransfe 93.2 0.038 1.3E-06 59.4 3.0 35 129-163 1-35 (409)
351 2yhs_A FTSY, cell division pro 93.2 0.08 2.7E-06 58.4 5.6 47 108-154 271-317 (503)
352 2og2_A Putative signal recogni 93.2 0.079 2.7E-06 56.3 5.4 30 125-154 152-181 (359)
353 3hdt_A Putative kinase; struct 93.2 0.041 1.4E-06 54.5 3.0 30 131-160 15-44 (223)
354 2v9p_A Replication protein E1; 93.1 0.044 1.5E-06 56.9 3.2 30 125-154 121-150 (305)
355 1z6g_A Guanylate kinase; struc 93.1 0.047 1.6E-06 53.7 3.2 28 127-154 20-47 (218)
356 1lvg_A Guanylate kinase, GMP k 93.0 0.046 1.6E-06 52.8 3.0 28 128-155 2-29 (198)
357 4b3f_X DNA-binding protein smu 92.9 0.073 2.5E-06 61.3 5.0 50 103-163 189-241 (646)
358 1znw_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 52.7 3.2 29 127-155 17-45 (207)
359 1rz3_A Hypothetical protein rb 92.8 0.066 2.3E-06 51.7 3.9 34 128-161 20-56 (201)
360 3lnc_A Guanylate kinase, GMP k 92.8 0.037 1.3E-06 54.8 2.0 28 127-154 24-52 (231)
361 3a00_A Guanylate kinase, GMP k 92.7 0.053 1.8E-06 51.7 3.0 25 131-155 2-26 (186)
362 2jeo_A Uridine-cytidine kinase 92.7 0.042 1.5E-06 55.0 2.3 31 128-158 23-53 (245)
363 3bh0_A DNAB-like replicative h 92.5 0.089 3E-06 54.9 4.6 37 126-162 64-103 (315)
364 3upu_A ATP-dependent DNA helic 92.4 0.081 2.8E-06 58.3 4.3 23 132-154 47-69 (459)
365 3lda_A DNA repair protein RAD5 92.4 0.075 2.6E-06 57.4 3.9 26 126-151 174-199 (400)
366 1zu4_A FTSY; GTPase, signal re 92.3 0.13 4.4E-06 53.8 5.5 48 107-154 77-129 (320)
367 1x6v_B Bifunctional 3'-phospho 92.3 0.065 2.2E-06 61.1 3.4 36 130-165 52-90 (630)
368 3ney_A 55 kDa erythrocyte memb 92.2 0.082 2.8E-06 51.2 3.5 27 129-155 18-44 (197)
369 1gtv_A TMK, thymidylate kinase 92.2 0.031 1.1E-06 54.3 0.5 25 133-157 3-27 (214)
370 3stj_A Protease DEGQ; serine p 92.1 0.14 4.8E-06 54.1 5.6 85 216-327 62-148 (345)
371 3tqf_A HPR(Ser) kinase; transf 92.1 0.078 2.7E-06 50.0 3.2 29 130-159 16-44 (181)
372 1ex7_A Guanylate kinase; subst 92.1 0.09 3.1E-06 50.4 3.6 27 131-157 2-28 (186)
373 1c9k_A COBU, adenosylcobinamid 91.8 0.096 3.3E-06 49.9 3.5 32 133-165 2-33 (180)
374 4eaq_A DTMP kinase, thymidylat 91.7 0.11 3.9E-06 51.4 4.1 28 129-156 25-52 (229)
375 2onk_A Molybdate/tungstate ABC 91.7 0.076 2.6E-06 53.1 2.7 28 126-154 21-48 (240)
376 2eyu_A Twitching motility prot 91.7 0.067 2.3E-06 54.2 2.4 28 127-154 22-49 (261)
377 2cbz_A Multidrug resistance-as 91.7 0.075 2.6E-06 53.1 2.6 29 126-154 27-55 (237)
378 2pcj_A ABC transporter, lipopr 91.5 0.064 2.2E-06 53.1 2.0 28 127-154 27-54 (224)
379 3kta_A Chromosome segregation 91.5 0.077 2.6E-06 50.1 2.5 24 132-155 28-51 (182)
380 2ewv_A Twitching motility prot 91.5 0.093 3.2E-06 56.1 3.3 36 119-154 125-160 (372)
381 3fvq_A Fe(3+) IONS import ATP- 91.4 0.073 2.5E-06 56.5 2.4 28 127-154 27-54 (359)
382 1s96_A Guanylate kinase, GMP k 91.4 0.1 3.5E-06 51.4 3.3 29 127-155 13-41 (219)
383 3tif_A Uncharacterized ABC tra 91.4 0.082 2.8E-06 52.7 2.6 28 127-154 28-55 (235)
384 3tqc_A Pantothenate kinase; bi 91.3 0.15 5E-06 53.3 4.6 28 128-155 90-117 (321)
385 1p5z_B DCK, deoxycytidine kina 91.3 0.078 2.7E-06 53.6 2.3 31 128-158 22-53 (263)
386 1b0u_A Histidine permease; ABC 91.2 0.087 3E-06 53.4 2.7 28 127-154 29-56 (262)
387 2i3b_A HCR-ntpase, human cance 91.2 0.099 3.4E-06 50.3 2.8 23 132-154 3-25 (189)
388 2it1_A 362AA long hypothetical 91.1 0.093 3.2E-06 55.8 2.9 28 127-154 26-53 (362)
389 3rlf_A Maltose/maltodextrin im 91.1 0.093 3.2E-06 56.1 2.9 28 127-154 26-53 (381)
390 2yyz_A Sugar ABC transporter, 91.1 0.093 3.2E-06 55.8 2.8 28 127-154 26-53 (359)
391 1sgw_A Putative ABC transporte 91.1 0.086 2.9E-06 51.8 2.3 28 127-154 32-59 (214)
392 4a1f_A DNAB helicase, replicat 91.0 0.16 5.4E-06 53.5 4.5 37 126-162 42-81 (338)
393 1v43_A Sugar-binding transport 91.0 0.096 3.3E-06 55.9 2.9 28 127-154 34-61 (372)
394 1z47_A CYSA, putative ABC-tran 91.0 0.087 3E-06 55.9 2.4 28 127-154 38-65 (355)
395 2axn_A 6-phosphofructo-2-kinas 90.9 0.08 2.7E-06 59.3 2.2 42 129-170 34-78 (520)
396 2olj_A Amino acid ABC transpor 90.9 0.099 3.4E-06 53.1 2.7 28 127-154 47-74 (263)
397 1g6h_A High-affinity branched- 90.9 0.094 3.2E-06 53.0 2.5 28 127-154 30-57 (257)
398 1yph_E Chymotrypsin A, chain C 90.9 0.062 2.1E-06 45.5 0.9 43 334-380 3-45 (97)
399 3d31_A Sulfate/molybdate ABC t 90.8 0.083 2.8E-06 55.9 2.1 28 127-154 23-50 (348)
400 1mv5_A LMRA, multidrug resista 90.8 0.093 3.2E-06 52.6 2.3 28 127-154 25-52 (243)
401 3b85_A Phosphate starvation-in 90.7 0.11 3.6E-06 50.9 2.6 24 130-153 22-45 (208)
402 2q6t_A DNAB replication FORK h 90.7 0.15 5.1E-06 55.9 4.1 38 126-163 196-237 (444)
403 2pze_A Cystic fibrosis transme 90.6 0.097 3.3E-06 51.9 2.3 29 126-154 30-58 (229)
404 1a7j_A Phosphoribulokinase; tr 90.6 0.084 2.9E-06 54.4 1.9 26 130-155 5-30 (290)
405 3d8b_A Fidgetin-like protein 1 90.6 0.07 2.4E-06 56.7 1.3 35 678-712 71-105 (357)
406 2zu0_C Probable ATP-dependent 90.6 0.12 4E-06 52.7 2.9 27 127-153 43-69 (267)
407 2ghi_A Transport protein; mult 90.6 0.11 3.7E-06 52.6 2.6 29 126-154 42-70 (260)
408 1ji0_A ABC transporter; ATP bi 90.5 0.099 3.4E-06 52.3 2.3 28 127-154 29-56 (240)
409 2ixe_A Antigen peptide transpo 90.5 0.11 3.7E-06 53.0 2.6 30 126-155 41-70 (271)
410 1g29_1 MALK, maltose transport 90.5 0.1 3.4E-06 55.8 2.4 28 127-154 26-53 (372)
411 3jvv_A Twitching mobility prot 90.5 0.075 2.5E-06 56.5 1.4 23 132-154 125-147 (356)
412 2qi9_C Vitamin B12 import ATP- 90.5 0.1 3.5E-06 52.5 2.3 29 127-155 23-51 (249)
413 3dzd_A Transcriptional regulat 90.5 0.19 6.4E-06 53.6 4.6 38 130-167 152-191 (368)
414 1np6_A Molybdopterin-guanine d 90.4 0.13 4.6E-06 48.6 3.0 28 127-154 3-30 (174)
415 1vpl_A ABC transporter, ATP-bi 90.4 0.12 4E-06 52.3 2.7 28 127-154 38-65 (256)
416 2d2e_A SUFC protein; ABC-ATPas 90.4 0.11 3.7E-06 52.3 2.4 27 127-153 26-52 (250)
417 3kl4_A SRP54, signal recogniti 90.3 0.23 7.9E-06 54.0 5.1 34 129-162 96-132 (433)
418 2ff7_A Alpha-hemolysin translo 90.3 0.11 3.6E-06 52.3 2.3 28 127-154 32-59 (247)
419 3gfo_A Cobalt import ATP-bindi 90.3 0.11 3.7E-06 53.2 2.3 28 127-154 31-58 (275)
420 2yz2_A Putative ABC transporte 90.3 0.12 4E-06 52.6 2.6 28 127-154 30-57 (266)
421 1sq5_A Pantothenate kinase; P- 90.2 0.14 4.7E-06 53.2 3.1 27 129-155 79-105 (308)
422 3e70_C DPA, signal recognition 90.2 0.22 7.4E-06 52.3 4.6 27 128-154 127-153 (328)
423 1lw7_A Transcriptional regulat 90.2 0.17 5.9E-06 53.8 3.9 35 123-157 161-197 (365)
424 1odf_A YGR205W, hypothetical 3 90.1 0.16 5.4E-06 52.3 3.4 29 128-156 29-57 (290)
425 2r6a_A DNAB helicase, replicat 90.1 0.14 4.8E-06 56.2 3.2 37 126-162 199-239 (454)
426 2ihy_A ABC transporter, ATP-bi 90.1 0.11 3.9E-06 53.1 2.3 28 127-154 44-71 (279)
427 2nq2_C Hypothetical ABC transp 90.0 0.12 4E-06 52.2 2.3 28 127-154 28-55 (253)
428 3cmu_A Protein RECA, recombina 89.9 0.12 4.1E-06 66.0 2.7 45 126-170 728-775 (2050)
429 1oxx_K GLCV, glucose, ABC tran 89.9 0.088 3E-06 55.9 1.3 28 127-154 28-55 (353)
430 1rj9_A FTSY, signal recognitio 89.9 0.16 5.4E-06 52.7 3.2 26 129-154 101-126 (304)
431 2orw_A Thymidine kinase; TMTK, 89.9 0.21 7.1E-06 47.6 3.9 31 131-161 4-37 (184)
432 3bgw_A DNAB-like replicative h 89.9 0.19 6.6E-06 55.0 4.1 38 126-163 193-233 (444)
433 2v3c_C SRP54, signal recogniti 89.9 0.29 9.9E-06 53.3 5.4 34 129-162 98-134 (432)
434 4g1u_C Hemin import ATP-bindin 89.8 0.12 4.1E-06 52.5 2.2 28 127-154 34-61 (266)
435 2ocp_A DGK, deoxyguanosine kin 89.8 0.17 5.8E-06 50.3 3.2 26 130-155 2-27 (241)
436 3e1s_A Exodeoxyribonuclease V, 89.7 0.14 4.7E-06 58.1 2.9 34 130-163 204-240 (574)
437 3dm5_A SRP54, signal recogniti 89.7 0.27 9.2E-06 53.6 5.0 34 129-162 99-135 (443)
438 3aez_A Pantothenate kinase; tr 89.6 0.16 5.6E-06 52.8 3.1 29 127-155 87-115 (312)
439 2r8r_A Sensor protein; KDPD, P 89.5 0.15 5E-06 50.4 2.5 24 131-154 7-30 (228)
440 1q57_A DNA primase/helicase; d 89.5 0.17 5.7E-06 56.4 3.2 38 126-163 238-279 (503)
441 3gd7_A Fusion complex of cysti 89.4 0.14 4.7E-06 55.1 2.4 28 126-153 43-70 (390)
442 1m8p_A Sulfate adenylyltransfe 89.4 0.11 3.9E-06 58.7 1.8 37 130-166 396-436 (573)
443 2oap_1 GSPE-2, type II secreti 89.3 0.14 4.7E-06 57.2 2.4 29 127-155 257-285 (511)
444 2ged_A SR-beta, signal recogni 89.1 0.41 1.4E-05 45.0 5.3 46 106-154 27-72 (193)
445 2j37_W Signal recognition part 89.1 0.42 1.4E-05 53.0 6.1 36 128-163 99-137 (504)
446 1bif_A 6-phosphofructo-2-kinas 89.1 0.11 3.7E-06 57.4 1.4 30 129-158 38-67 (469)
447 1g8f_A Sulfate adenylyltransfe 88.8 0.18 6.2E-06 56.0 2.9 26 131-156 396-421 (511)
448 2b8t_A Thymidine kinase; deoxy 88.7 0.26 9E-06 48.6 3.7 31 132-162 14-47 (223)
449 2bbs_A Cystic fibrosis transme 88.7 0.16 5.6E-06 52.2 2.3 28 127-154 61-88 (290)
450 2fz4_A DNA repair protein RAD2 88.6 0.28 9.5E-06 48.7 3.8 37 132-168 110-147 (237)
451 4i1u_A Dephospho-COA kinase; s 88.4 0.31 1.1E-05 47.6 3.9 31 131-162 10-40 (210)
452 2gk6_A Regulator of nonsense t 88.3 0.18 6.2E-06 57.8 2.5 22 132-153 197-218 (624)
453 2pjz_A Hypothetical protein ST 88.3 0.2 6.8E-06 50.8 2.6 27 127-154 28-54 (263)
454 1tf7_A KAIC; homohexamer, hexa 88.2 0.18 6.3E-06 56.4 2.5 28 126-153 277-304 (525)
455 1tf7_A KAIC; homohexamer, hexa 88.2 0.19 6.5E-06 56.3 2.6 40 126-165 35-78 (525)
456 2pt7_A CAG-ALFA; ATPase, prote 88.1 0.15 5.3E-06 53.5 1.6 29 127-155 168-196 (330)
457 1xjc_A MOBB protein homolog; s 88.0 0.25 8.4E-06 46.6 2.8 25 130-154 4-28 (169)
458 2gza_A Type IV secretion syste 87.9 0.19 6.4E-06 53.5 2.2 30 126-155 171-200 (361)
459 3v9p_A DTMP kinase, thymidylat 87.8 0.35 1.2E-05 47.8 3.9 26 130-155 25-50 (227)
460 3cr8_A Sulfate adenylyltranfer 87.7 0.15 5E-06 57.5 1.2 28 128-155 367-394 (552)
461 2px0_A Flagellar biosynthesis 87.7 0.23 7.9E-06 51.2 2.6 27 128-154 103-129 (296)
462 2f9l_A RAB11B, member RAS onco 87.3 0.28 9.5E-06 46.8 2.8 23 132-154 7-29 (199)
463 2xxa_A Signal recognition part 87.2 0.75 2.6E-05 50.1 6.5 57 107-163 77-137 (433)
464 3tmk_A Thymidylate kinase; pho 87.2 0.43 1.5E-05 46.8 4.1 28 130-157 5-32 (216)
465 1nrj_B SR-beta, signal recogni 87.0 0.34 1.2E-05 46.8 3.4 26 129-154 11-36 (218)
466 1oix_A RAS-related protein RAB 86.9 0.27 9.2E-06 46.7 2.5 23 132-154 31-53 (191)
467 3tui_C Methionine import ATP-b 86.8 0.29 9.9E-06 52.0 2.9 28 127-154 51-78 (366)
468 4edh_A DTMP kinase, thymidylat 86.8 0.2 6.9E-06 49.0 1.5 25 131-155 7-31 (213)
469 4a8c_A Periplasmic PH-dependen 86.6 0.94 3.2E-05 49.3 6.9 85 216-327 62-148 (436)
470 2dyk_A GTP-binding protein; GT 86.6 0.34 1.2E-05 43.9 2.9 23 132-154 3-25 (161)
471 2dpy_A FLII, flagellum-specifi 86.6 0.44 1.5E-05 52.0 4.2 29 128-156 155-183 (438)
472 1p9r_A General secretion pathw 86.5 0.28 9.7E-06 53.2 2.6 26 130-155 166-192 (418)
473 1z6t_A APAF-1, apoptotic prote 86.5 0.63 2.2E-05 52.6 5.7 50 96-153 121-170 (591)
474 3nh6_A ATP-binding cassette SU 86.4 0.24 8E-06 51.4 1.9 30 126-155 76-105 (306)
475 2zej_A Dardarin, leucine-rich 86.1 0.32 1.1E-05 45.7 2.5 22 132-153 4-25 (184)
476 1f2t_A RAD50 ABC-ATPase; DNA d 86.0 0.37 1.3E-05 44.2 2.8 22 132-153 25-46 (149)
477 2npi_A Protein CLP1; CLP1-PCF1 86.0 0.29 9.8E-06 53.8 2.3 29 126-154 134-162 (460)
478 2wjy_A Regulator of nonsense t 85.9 0.3 1E-05 57.6 2.5 22 132-153 373-394 (800)
479 1z2a_A RAS-related protein RAB 85.7 0.39 1.3E-05 43.8 2.8 24 130-153 5-28 (168)
480 1w36_D RECD, exodeoxyribonucle 85.7 0.32 1.1E-05 55.5 2.7 23 130-152 164-186 (608)
481 2wji_A Ferrous iron transport 85.7 0.37 1.3E-05 44.4 2.7 22 132-153 5-26 (165)
482 3sop_A Neuronal-specific septi 85.7 0.32 1.1E-05 49.5 2.3 23 132-154 4-26 (270)
483 3ice_A Transcription terminati 85.6 0.67 2.3E-05 49.4 4.8 27 128-154 172-198 (422)
484 2obl_A ESCN; ATPase, hydrolase 85.4 0.47 1.6E-05 50.1 3.6 28 129-156 70-97 (347)
485 2ce2_X GTPase HRAS; signaling 85.4 0.37 1.2E-05 43.6 2.4 22 132-153 5-26 (166)
486 1pui_A ENGB, probable GTP-bind 85.3 0.24 8.3E-06 47.5 1.2 30 125-154 21-50 (210)
487 2nzj_A GTP-binding protein REM 85.2 0.41 1.4E-05 44.0 2.7 23 131-153 5-27 (175)
488 1j8m_F SRP54, signal recogniti 85.1 1.1 3.7E-05 46.2 6.1 25 130-154 98-122 (297)
489 1u8z_A RAS-related protein RAL 85.0 0.44 1.5E-05 43.3 2.8 24 130-153 4-27 (168)
490 1knx_A Probable HPR(Ser) kinas 85.0 0.45 1.6E-05 49.2 3.1 31 129-160 146-176 (312)
491 1kao_A RAP2A; GTP-binding prot 84.9 0.45 1.6E-05 43.1 2.9 23 131-153 4-26 (167)
492 1z0j_A RAB-22, RAS-related pro 84.9 0.46 1.6E-05 43.4 2.9 24 131-154 7-30 (170)
493 1ek0_A Protein (GTP-binding pr 84.8 0.46 1.6E-05 43.3 2.8 22 132-153 5-26 (170)
494 1z08_A RAS-related protein RAB 84.7 0.47 1.6E-05 43.4 2.9 24 130-153 6-29 (170)
495 1wms_A RAB-9, RAB9, RAS-relate 84.7 0.47 1.6E-05 43.8 2.9 23 131-153 8-30 (177)
496 1qhl_A Protein (cell division 84.6 0.23 7.9E-06 49.1 0.7 22 133-154 30-51 (227)
497 2lkc_A Translation initiation 84.6 0.56 1.9E-05 43.3 3.4 26 128-153 6-31 (178)
498 1ky3_A GTP-binding protein YPT 84.2 0.5 1.7E-05 43.7 2.9 24 130-153 8-31 (182)
499 2erx_A GTP-binding protein DI- 84.2 0.5 1.7E-05 43.1 2.8 22 132-153 5-26 (172)
500 3q72_A GTP-binding protein RAD 84.2 0.38 1.3E-05 43.9 1.9 22 132-153 4-25 (166)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-51 Score=444.58 Aligned_cols=252 Identities=40% Similarity=0.681 Sum_probs=222.8
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..|.++|+|++|.++.++ +.+..++.+|+.|.++|++||+|||||||||||||++|+|+|++++++|+.|+++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 45668899999988876443 455556899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+||++ .+|+..|..+...+||++||||++.+...++
T Consensus 219 ~sk~vGese----------------~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~------------------------ 258 (405)
T 4b4t_J 219 VQKYIGEGS----------------RMVRELFVMAREHAPSIIFMDEIDSIGSTRV------------------------ 258 (405)
T ss_dssp SCSSTTHHH----------------HHHHHHHHHHHHTCSEEEEEESSSCCTTSCS------------------------
T ss_pred hccccchHH----------------HHHHHHHHHHHHhCCceEeeecchhhccCCC------------------------
Confidence 999999987 6788889999999999999999866221000
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 259 -------------------------------------------------------------------------------- 258 (405)
T 4b4t_J 259 -------------------------------------------------------------------------------- 258 (405)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
.
T Consensus 259 --------------------------------------------------------------------~----------- 259 (405)
T 4b4t_J 259 --------------------------------------------------------------------E----------- 259 (405)
T ss_dssp --------------------------------------------------------------------C-----------
T ss_pred --------------------------------------------------------------------C-----------
Confidence 0
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
..++ .
T Consensus 260 ------------------------------------------------------------------------~~~~---~ 264 (405)
T 4b4t_J 260 ------------------------------------------------------------------------GSGG---G 264 (405)
T ss_dssp ------------------------------------------------------------------------SSSG---G
T ss_pred ------------------------------------------------------------------------CCCC---C
Confidence 0000 0
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
....++++++||++|||+....+|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.+++++++..++|++
T Consensus 265 ~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~ 344 (405)
T 4b4t_J 265 DSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLR 344 (405)
T ss_dssp GGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHH
T ss_pred cHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHH
Confidence 12345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCT 615 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~ 615 (713)
.||+.|+|||||||+++|++|++.|+++++..|+++||+.|++++.+..
T Consensus 345 ~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 345 KVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999886653
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-51 Score=475.57 Aligned_cols=301 Identities=32% Similarity=0.576 Sum_probs=256.1
Q ss_pred hhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 91 DAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
...+.++|+|++|.++.++ +.+...|.+|+.|..+|+.||+|||||||||||||+||+++|++++++|+.|++++++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 4567889999998887544 4444558999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEE
Q psy6523 168 QKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247 (713)
Q Consensus 168 s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv 247 (713)
++|+|+++ .+++..|..+...+|++++|||++.+...
T Consensus 276 sk~~gese----------------~~lr~lF~~A~~~~PsIIfIDEiDal~~~--------------------------- 312 (806)
T 3cf2_A 276 SKLAGESE----------------SNLRKAFEEAEKNAPAIIFIDELDAIAPK--------------------------- 312 (806)
T ss_dssp SSCTTHHH----------------HHHHHHHHHHTTSCSEEEEEESGGGTCCT---------------------------
T ss_pred cccchHHH----------------HHHHHHHHHHHHcCCeEEEEehhcccccc---------------------------
Confidence 99999987 67888899999999999999988552100
Q ss_pred EEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 248 ~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
T Consensus 313 -------------------------------------------------------------------------------- 312 (806)
T 3cf2_A 313 -------------------------------------------------------------------------------- 312 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHHH
Q psy6523 328 VEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVED 407 (713)
Q Consensus 328 ~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~~ 407 (713)
+.
T Consensus 313 ----------------------------------------------------------------r~-------------- 314 (806)
T 3cf2_A 313 ----------------------------------------------------------------RE-------------- 314 (806)
T ss_dssp ----------------------------------------------------------------TT--------------
T ss_pred ----------------------------------------------------------------cC--------------
Confidence 00
Q ss_pred HHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHHH
Q psy6523 408 DIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQI 487 (713)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~~ 487 (713)
..+ .
T Consensus 315 -----------------------------------------------------------------------~~~-----~ 318 (806)
T 3cf2_A 315 -----------------------------------------------------------------------KTH-----G 318 (806)
T ss_dssp -----------------------------------------------------------------------TCC-----C
T ss_pred -----------------------------------------------------------------------CCC-----C
Confidence 000 0
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHH
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFEL 567 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 567 (713)
+..++++++||++||++...++|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.+++++++..++|+..
T Consensus 319 ~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~ 398 (806)
T 3cf2_A 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398 (806)
T ss_dssp TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHH
Confidence 11248999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAP 647 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~ 647 (713)
||.+|+||||+||.+||++|++.|+++....++..+ . .
T Consensus 399 lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~------------------~------------------------~ 436 (806)
T 3cf2_A 399 VANETHGHVGADLAALCSEAALQAIRKKMDLIDLED------------------E------------------------T 436 (806)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC------------------C------------------------C
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc------------------c------------------------c
Confidence 999999999999999999999999988643221100 0 0
Q ss_pred ccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 648 TDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 648 ~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
.+.+......++..||..++. .++|+++|+.+.++|+|+|+|||||+++|++|+++|+||++|
T Consensus 437 ~~~e~~~~~~v~~~Df~~Al~---~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~ 499 (806)
T 3cf2_A 437 IDAEVMNSLAVTMDDFRWALS---QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499 (806)
T ss_dssp CSHHHHHHCEECTTHHHHHHS---SSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTC
T ss_pred cchhhhccceeeHHHHHHHHH---hCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhC
Confidence 000111235577888888887 899999999999999999999999999999999999999986
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-50 Score=436.33 Aligned_cols=253 Identities=38% Similarity=0.662 Sum_probs=222.3
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..+.++|+|++|.++.++ +.+..++.+|+.|..+|+++|+|||||||||||||++|+|+|++++++|+.|+++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 45668899999888876433 555666899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+||++ ..|+..|..+...+|+++|+||++.+...++-
T Consensus 253 ~sk~vGese----------------k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~----------------------- 293 (437)
T 4b4t_I 253 IQKYLGDGP----------------RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYD----------------------- 293 (437)
T ss_dssp CCSSSSHHH----------------HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSC-----------------------
T ss_pred hhccCchHH----------------HHHHHHHHHHHhcCCcEEEEehhhhhcccCCC-----------------------
Confidence 999999987 67888888999999999999998663211000
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 294 -------------------------------------------------------------------------------- 293 (437)
T 4b4t_I 294 -------------------------------------------------------------------------------- 293 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
.
T Consensus 294 --------------------------------------------------------------------~----------- 294 (437)
T 4b4t_I 294 --------------------------------------------------------------------S----------- 294 (437)
T ss_dssp --------------------------------------------------------------------S-----------
T ss_pred --------------------------------------------------------------------C-----------
Confidence 0
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
..++
T Consensus 295 ------------------------------------------------------------------------~~~~---- 298 (437)
T 4b4t_I 295 ------------------------------------------------------------------------NSGG---- 298 (437)
T ss_dssp ------------------------------------------------------------------------SCSS----
T ss_pred ------------------------------------------------------------------------CCCc----
Confidence 0000
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
.....+++++||++|||++..++|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.|++++++..++|++
T Consensus 299 ~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~ 378 (437)
T 4b4t_I 299 EREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLE 378 (437)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHH
T ss_pred cHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHH
Confidence 01234889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~ 616 (713)
.||+.|+|||||||+++|++|++.|+++++..|+.+||+.|++++.++..
T Consensus 379 ~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 379 TLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999998876533
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-49 Score=434.04 Aligned_cols=255 Identities=57% Similarity=0.922 Sum_probs=222.4
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..|.++|+|++|.++.++ +.+..++.+|+.|.++|++||+|||||||||||||++|+|+|++++++|+.|+++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 34567899999888776433 344455899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+|+++ ..|+..|..+...+|+++|+||++.+...++
T Consensus 280 ~sk~vGese----------------k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~------------------------ 319 (467)
T 4b4t_H 280 VQKYVGEGA----------------RMVRELFEMARTKKACIIFFDEIDAVGGARF------------------------ 319 (467)
T ss_dssp CCCSSSHHH----------------HHHHHHHHHHHHTCSEEEEEECCTTTSBCCS------------------------
T ss_pred hcccCCHHH----------------HHHHHHHHHHHhcCCceEeeccccccccccc------------------------
Confidence 999999987 6788888999999999999999866221000
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 320 -------------------------------------------------------------------------------- 319 (467)
T 4b4t_H 320 -------------------------------------------------------------------------------- 319 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
.
T Consensus 320 -------------------------------------------------------------------~------------ 320 (467)
T 4b4t_H 320 -------------------------------------------------------------------D------------ 320 (467)
T ss_dssp -------------------------------------------------------------------S------------
T ss_pred -------------------------------------------------------------------C------------
Confidence 0
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
+.++ .
T Consensus 321 ------------------------------------------------------------------------~~~~---~ 325 (467)
T 4b4t_H 321 ------------------------------------------------------------------------DGAG---G 325 (467)
T ss_dssp ------------------------------------------------------------------------SSCG---G
T ss_pred ------------------------------------------------------------------------cCCC---c
Confidence 0000 0
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
....+++++++|++||++...++|+||+|||||+.|||||+||||||++|+|++||.++|.+||+.+++++++..++|++
T Consensus 326 ~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~ 405 (467)
T 4b4t_H 326 DNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWE 405 (467)
T ss_dssp GGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHH
T ss_pred cHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 12235889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccccc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKII 618 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~ 618 (713)
.||+.|+|||||||+++|++|++.|+++++..++.+||+.|++++..+.++.
T Consensus 406 ~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 406 LISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999999999987765543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-49 Score=433.83 Aligned_cols=251 Identities=35% Similarity=0.631 Sum_probs=220.2
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..+.++|+|++|.++.++ +.+..++.+|+.|.++|++||+|||||||||||||++|+|+|++++++|+.|+++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 35567889999988877444 456667899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+|+++ ..++..|..+...+|+++|+||++.+...+
T Consensus 252 ~~~~vGese----------------~~ir~lF~~A~~~aP~IifiDEiDal~~~R------------------------- 290 (434)
T 4b4t_M 252 VQMYIGEGA----------------KLVRDAFALAKEKAPTIIFIDELDAIGTKR------------------------- 290 (434)
T ss_dssp CSSCSSHHH----------------HHHHHHHHHHHHHCSEEEEEECTHHHHCCC-------------------------
T ss_pred hhcccchHH----------------HHHHHHHHHHHhcCCeEEeecchhhhhhcc-------------------------
Confidence 999999987 677788888888899999999875522100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 291 -------------------------------------------------------------------------------- 290 (434)
T 4b4t_M 291 -------------------------------------------------------------------------------- 290 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
...
T Consensus 291 ------------------------------------------------------------------~~~----------- 293 (434)
T 4b4t_M 291 ------------------------------------------------------------------FDS----------- 293 (434)
T ss_dssp ------------------------------------------------------------------SSG-----------
T ss_pred ------------------------------------------------------------------CCC-----------
Confidence 000
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
..+ .
T Consensus 294 ------------------------------------------------------------------------~~~----~ 297 (434)
T 4b4t_M 294 ------------------------------------------------------------------------EKS----G 297 (434)
T ss_dssp ------------------------------------------------------------------------GGG----T
T ss_pred ------------------------------------------------------------------------CCC----C
Confidence 000 0
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
....++++++||++|||+.+.++|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.+++++++..++|++
T Consensus 298 ~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~ 377 (434)
T 4b4t_M 298 DREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQ 377 (434)
T ss_dssp THHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHH
T ss_pred chHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHH
Confidence 12345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
.||+.|+|||||||+++|++|++.|++++...|+.+||..|++++.++
T Consensus 378 ~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 378 ELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-49 Score=432.74 Aligned_cols=253 Identities=40% Similarity=0.638 Sum_probs=221.8
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..+.++|+|++|.++.++ +.+..++.+|+.|..+|++||+|||||||||||||++|+|+|++++++|+.|+++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34567889999988877444 455666899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+|+++ ..+...|..+...+|+++|+||++.+...++
T Consensus 252 ~sk~~Gese----------------~~ir~~F~~A~~~~P~IifiDEiDai~~~R~------------------------ 291 (437)
T 4b4t_L 252 VDKYIGESA----------------RIIREMFAYAKEHEPCIIFMDEVDAIGGRRF------------------------ 291 (437)
T ss_dssp CCSSSSHHH----------------HHHHHHHHHHHHSCSEEEEEECCCSSSCCCS------------------------
T ss_pred ccccchHHH----------------HHHHHHHHHHHhcCCceeeeecccccccccc------------------------
Confidence 999999987 5778888889999999999999866321100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 292 -------------------------------------------------------------------------------- 291 (437)
T 4b4t_L 292 -------------------------------------------------------------------------------- 291 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
..+
T Consensus 292 -------------------------------------------------------------------~~~---------- 294 (437)
T 4b4t_L 292 -------------------------------------------------------------------SEG---------- 294 (437)
T ss_dssp -------------------------------------------------------------------SSC----------
T ss_pred -------------------------------------------------------------------cCC----------
Confidence 000
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
.+ .
T Consensus 295 -------------------------------------------------------------------------~~----~ 297 (437)
T 4b4t_L 295 -------------------------------------------------------------------------TS----A 297 (437)
T ss_dssp -------------------------------------------------------------------------CS----S
T ss_pred -------------------------------------------------------------------------CC----c
Confidence 00 0
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
....++++++||++|||+.+.++|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.|++++++..++|++
T Consensus 298 ~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~ 377 (437)
T 4b4t_L 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377 (437)
T ss_dssp TTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHH
T ss_pred chHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHH
Confidence 01234889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~ 616 (713)
.||+.|+|||||||+++|++|++.|++++...|+.+||+.|++++.+..+
T Consensus 378 ~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 378 AAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999998876543
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-48 Score=424.62 Aligned_cols=250 Identities=37% Similarity=0.578 Sum_probs=217.8
Q ss_pred hhhcCCccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++..+.++|+|++|.++.++ +.+..++.+|+.|..+|+.||+|+|||||||||||++|+|+|++++++|+.|+++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 34567789999888876433 455566899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+|+++ .+|...|..+...+|+++++|+++.+...+
T Consensus 243 ~~~~~Ge~e----------------~~ir~lF~~A~~~aP~IifiDEiD~i~~~R------------------------- 281 (428)
T 4b4t_K 243 VHKYLGEGP----------------RMVRDVFRLARENAPSIIFIDEVDSIATKR------------------------- 281 (428)
T ss_dssp CCSSCSHHH----------------HHHHHHHHHHHHTCSEEEEEECTHHHHCSC-------------------------
T ss_pred hccccchhH----------------HHHHHHHHHHHHcCCCeeechhhhhhhccc-------------------------
Confidence 999999987 678888888888999999999875521100
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 282 -------------------------------------------------------------------------------- 281 (428)
T 4b4t_K 282 -------------------------------------------------------------------------------- 281 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
....
T Consensus 282 ------------------------------------------------------------------~~~~---------- 285 (428)
T 4b4t_K 282 ------------------------------------------------------------------FDAQ---------- 285 (428)
T ss_dssp ------------------------------------------------------------------SSSC----------
T ss_pred ------------------------------------------------------------------cCCC----------
Confidence 0000
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
.++
T Consensus 286 -------------------------------------------------------------------------~~~---- 288 (428)
T 4b4t_K 286 -------------------------------------------------------------------------TGS---- 288 (428)
T ss_dssp -------------------------------------------------------------------------SCC----
T ss_pred -------------------------------------------------------------------------CCC----
Confidence 000
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEec-CCCHHHHHHHHHHhhccCCCcccccH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFG-LPDLEGRTHIFKIHARSMSVERDIRF 565 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~-~P~~~~R~~il~~~~~~~~~~~~~~~ 565 (713)
....++++++||++|||+.+..+|+||+|||+|+.|||||+||||||++|+|| +|+.++|.+||+.+++++++..++|+
T Consensus 289 ~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl 368 (428)
T 4b4t_K 289 DREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL 368 (428)
T ss_dssp CCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH
T ss_pred ChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH
Confidence 01235899999999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 566 ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 566 ~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
+.||++|+|||||||+++|++|++.|+++++..|+++||++|+.++.+
T Consensus 369 ~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 369 DSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999987543
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.9e-46 Score=434.96 Aligned_cols=287 Identities=29% Similarity=0.504 Sum_probs=186.0
Q ss_pred hhcCCccccCCCCCcHHHHHHHHH----HHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 91 DAIGGARFDDGAGGDNEVQRTMLE----LINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~~~i~~----~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
-.++.++|+|++|.+ ++++.+.+ ++++|+.|.++|+.+|+|+|||||||||||++|+|+|++++.+|+.|+++++
T Consensus 469 ~~~p~v~w~diggl~-~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLE-DVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CBCCCCCSTTCCSCH-HHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred ccCCCCCHHHhCCHH-HHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 345778898876655 44544444 4688999999999999999999999999999999999999999999999999
Q ss_pred eeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceE
Q psy6523 167 VQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLI 246 (713)
Q Consensus 167 ~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~v 246 (713)
+++|+||++ ..|+..|+.+...+|+++||||++.+...++
T Consensus 548 ~s~~vGese----------------~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~------------------------ 587 (806)
T 3cf2_A 548 LTMWFGESE----------------ANVREIFDKARQAAPCVLFFDELDSIAKARG------------------------ 587 (806)
T ss_dssp HTTTCSSCH----------------HHHHHHHHHHHTTCSEEEECSCGGGCC----------------------------
T ss_pred hccccchHH----------------HHHHHHHHHHHHcCCceeechhhhHHhhccC------------------------
Confidence 999999987 6788899999999999999999866321000
Q ss_pred EEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 247 v~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
T Consensus 588 -------------------------------------------------------------------------------- 587 (806)
T 3cf2_A 588 -------------------------------------------------------------------------------- 587 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccccccHhhHHHHHHhcCCccchhhhhHH
Q psy6523 327 RVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQVTLDEADIALLKSYGQGQYTKSIKAVE 406 (713)
Q Consensus 327 ~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~~l~e~d~~~~~~~~~~~~~~~~~~~~ 406 (713)
T Consensus 588 -------------------------------------------------------------------------------- 587 (806)
T 3cf2_A 588 -------------------------------------------------------------------------------- 587 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCCCCccchhcccccCCCcccccccccHHH
Q psy6523 407 DDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 486 (713)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~~~~~~~~~~~~~~gg~~~~ 486 (713)
++....
T Consensus 588 --------------------------------------------------------------------------~~~~~~ 593 (806)
T 3cf2_A 588 --------------------------------------------------------------------------GNIGDG 593 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 000001
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHH
Q psy6523 487 IEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFE 566 (713)
Q Consensus 487 ~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~ 566 (713)
+...+|++++||++|||+.+.++|+||+|||+|+.||||++||||||++|+|++||.++|.+||+.++++.++..++|++
T Consensus 594 ~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~ 673 (806)
T 3cf2_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 673 (806)
T ss_dssp ----CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 12234999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCC
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVA 646 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~ 646 (713)
.||++|+|||||||+++|++|++.|+++.........-... ..+ ...........+.|++.||.+++..++|||+
T Consensus 674 ~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 674 FLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ---TNP--SAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHC----------------------------CCC----CCTTTC--------
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---cCc--cccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999875432111111000 000 0011112233467999999999999999999
Q ss_pred ccccccccccc
Q psy6523 647 PTDIEEGMRVG 657 (713)
Q Consensus 647 ~~d~~~~~~~~ 657 (713)
++++..|..+.
T Consensus 749 ~~~l~~y~~~~ 759 (806)
T 3cf2_A 749 DNDIRKYEMFA 759 (806)
T ss_dssp -------CCCC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 9
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5.2e-38 Score=352.20 Aligned_cols=163 Identities=34% Similarity=0.622 Sum_probs=123.9
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
++++++||..|+++....+++||+|||+|+.||++++|+|||++.|+|++|+.++|.+||+.+++++++..++++..++.
T Consensus 322 ~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~ 401 (489)
T 3hu3_A 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (489)
T ss_dssp HHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHH
Confidence 48899999999999888899999999999999999999999999999999999999999999999999888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDI 650 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~ 650 (713)
.+.||+|+||.++|++|++.|+++....++.++ .. .. -
T Consensus 402 ~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~-------------------~~--------------------~~---~ 439 (489)
T 3hu3_A 402 ETHGHVGADLAALCSEAALQAIRKKMDLIDLED-------------------ET--------------------ID---A 439 (489)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC-------------------SS--------------------CC---H
T ss_pred HccCCcHHHHHHHHHHHHHHHHHhccccccccc-------------------cc--------------------cc---h
Confidence 999999999999999999999886543221100 00 00 0
Q ss_pred cccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHH
Q psy6523 651 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKE 698 (713)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~ 698 (713)
.......++.+||..++. .++||++|+.+.++|+|+|+||||...
T Consensus 440 ~~~~~~~vt~edf~~Al~---~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 440 EVMNSLAVTMDDFRWALS---QSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp HHHHHCCBCHHHHHHHHT---SHHHHHHHGGGC---------------
T ss_pred hhcccCcCCHHHHHHHHH---hCCchhhhcccccCCCCCHHHcCCCcc
Confidence 001124466777777777 899999999999999999999999753
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=316.81 Aligned_cols=140 Identities=30% Similarity=0.512 Sum_probs=112.4
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc---CCCcccccHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS---MSVERDIRFELL 568 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~---~~~~~~~~~~~l 568 (713)
+++++++.+|+|......++++++||+|+.||||++||||||+.|++++|+.++|.+||+.++++ .++..++++..+
T Consensus 129 ~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 2x8a_A 129 RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208 (274)
T ss_dssp THHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHH
T ss_pred HHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHH
Confidence 66889999999998888999999999999999999999999999999999999999999999854 455678999999
Q ss_pred HHhCC--CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCC
Q psy6523 569 ARLCP--NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVA 646 (713)
Q Consensus 569 a~~t~--g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~ 646 (713)
|..|. |||||||.++|++|++.|+++....-. .........++..||.+++..++||++
T Consensus 209 a~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~-------------------~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 209 AGDLRCDCYTGADLSALVREASICALRQEMARQK-------------------SGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------------------------------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcc-------------------ccccccCCeecHHHHHHHHHHhcCCCC
Confidence 99754 999999999999999999976421100 001112346888999999999999988
Q ss_pred cccc
Q psy6523 647 PTDI 650 (713)
Q Consensus 647 ~~d~ 650 (713)
++++
T Consensus 270 ~~~~ 273 (274)
T 2x8a_A 270 KKDQ 273 (274)
T ss_dssp ----
T ss_pred hhhc
Confidence 8764
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.9e-35 Score=310.67 Aligned_cols=159 Identities=30% Similarity=0.501 Sum_probs=125.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
+++++||..||++....+|+||+|||+|+.||++++|+|||++.|+|++|+.++|.+||+.++++.++..++++..++..
T Consensus 137 ~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~ 216 (301)
T 3cf0_A 137 RVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 216 (301)
T ss_dssp HHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT
T ss_pred HHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH
Confidence 78899999999998888899999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCccccc
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIE 651 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~ 651 (713)
|+||||+||+++|++|++.|+++........ ........ .............++..||.+++..++++++++++.
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~ 291 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRESIESEIRR---ERERQTNP--SAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIR 291 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHC-------------------------CCCBCHHHHHHHHTTCCCSSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhccccc--ccccccccccCCccCHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999997643211000 00000000 000000111235688999999999999999999888
Q ss_pred cccc
Q psy6523 652 EGMR 655 (713)
Q Consensus 652 ~~~~ 655 (713)
.+..
T Consensus 292 ~~~~ 295 (301)
T 3cf0_A 292 KYEM 295 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=9.4e-35 Score=323.14 Aligned_cols=127 Identities=39% Similarity=0.700 Sum_probs=116.6
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+++++||..||++....+|+||+|||+|+.|||+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|.
T Consensus 136 ~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~ 215 (476)
T 2ce7_A 136 EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215 (476)
T ss_dssp HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 47889999999999877889999999999999999999999999999999999999999999999999888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKI 617 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~ 617 (713)
.|+||+|+||.++|++|++.|.+++...|+.+||.+|++++..+...
T Consensus 216 ~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~ 262 (476)
T 2ce7_A 216 RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPAR 262 (476)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-----
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccc
Confidence 99999999999999999999998888899999999999998765443
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=304.39 Aligned_cols=162 Identities=21% Similarity=0.350 Sum_probs=125.9
Q ss_pred HHHHHHhhhhcccCCC-CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHH
Q psy6523 490 LREVVETPLLHLDGFD-PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFEL 567 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~-~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 567 (713)
.++++++||++||++. ...+|+||+|||+|+.||++++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..
T Consensus 129 ~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 206 (322)
T 1xwi_A 129 ARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRE 206 (322)
T ss_dssp HHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 3588999999999986 46789999999999999999999 999999999999999999999999988765 6789999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhH------------hhhccc------ccc--c--CCCCc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNK------------VARCTK------IIN--A--DSENP 625 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~------------~~~~~~------~~~--~--~~~~~ 625 (713)
||+.|+||||+||.++|++|++.|+++...... +..+... ..++.. ..+ . ..+..
T Consensus 207 la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
T 1xwi_A 207 LGRKTDGYSGADISIIVRDALMQPVRKVQSATH---FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL 283 (322)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE---EEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh---hhhhccccccccccccccccccccccccchhhcccccccccccc
Confidence 999999999999999999999999987532100 0000000 000000 000 0 00112
Q ss_pred hhhhhHHHHHHHHhhcCCCCCcccccccccc
Q psy6523 626 KYIINVKQFAKFVVDLADSVAPTDIEEGMRV 656 (713)
Q Consensus 626 ~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~ 656 (713)
..+|++.||.+++..++||++++++..+..+
T Consensus 284 ~~~v~~~df~~al~~~~ps~~~~~~~~~~~~ 314 (322)
T 1xwi_A 284 EPVVSMSDMLRSLSNTKPTVNEHDLLKLKKF 314 (322)
T ss_dssp CCCBCHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3579999999999999999999999887654
No 14
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=2.9e-33 Score=312.95 Aligned_cols=161 Identities=34% Similarity=0.551 Sum_probs=138.2
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+.++++|.+|||......++++++||+|+.|||+++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|.
T Consensus 151 ~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~ 230 (499)
T 2dhr_A 151 EQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 230 (499)
T ss_dssp HHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHT
T ss_pred HHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 47789999999999888889999999999999999999999999999999999999999999999988888999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccc-cCCCCchhhhhHHHHHHHHhhcC----CCC
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIIN-ADSENPKYIINVKQFAKFVVDLA----DSV 645 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~----~sv 645 (713)
.|+||+|+||+++|++|++.|.+++...|+.+||.+|++++..+....+ ..++.....++.|+..+++.... ..+
T Consensus 231 ~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v 310 (499)
T 2dhr_A 231 RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGV 310 (499)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCee
Confidence 9999999999999999999999887788999999999999887754433 23334445667777777666554 456
Q ss_pred Cccccc
Q psy6523 646 APTDIE 651 (713)
Q Consensus 646 ~~~d~~ 651 (713)
.+.+|.
T Consensus 311 ~~~~i~ 316 (499)
T 2dhr_A 311 HKVTIV 316 (499)
T ss_dssp CCEESC
T ss_pred eEEEee
Confidence 666664
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.4e-34 Score=304.83 Aligned_cols=164 Identities=24% Similarity=0.345 Sum_probs=128.4
Q ss_pred HHHHHhhhhcccCCC-CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHH
Q psy6523 491 REVVETPLLHLDGFD-PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELL 568 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~-~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 568 (713)
+++++++|..|+++. ...+|+||+|||+|+.||++++| ||++.|++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus 135 ~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~l 212 (322)
T 3eie_A 135 RRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTL 212 (322)
T ss_dssp HHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 478899999999984 56689999999999999999999 999999999999999999999999988765 67899999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh---hhcccc--------c--ccCCCCchhhhhHHHHH
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV---ARCTKI--------I--NADSENPKYIINVKQFA 635 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~---~~~~~~--------~--~~~~~~~~~~i~~~~~~ 635 (713)
|+.|+||||+||.++|++|++.|+++....+..+++..+.+.. .+.... . ..........|++.||.
T Consensus 213 a~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 292 (322)
T 3eie_A 213 GAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFL 292 (322)
T ss_dssp HHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHH
Confidence 9999999999999999999999999876543322221111100 000000 0 00112223679999999
Q ss_pred HHHhhcCCCCCcccccccccc
Q psy6523 636 KFVVDLADSVAPTDIEEGMRV 656 (713)
Q Consensus 636 ~~~~~~~~sv~~~d~~~~~~~ 656 (713)
+++..++|+++.+++..+..+
T Consensus 293 ~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 293 KAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp HHHHHSCCSSCTTHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999887654
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.98 E-value=3e-32 Score=281.70 Aligned_cols=123 Identities=41% Similarity=0.741 Sum_probs=116.0
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+.++++|..|+++....+++||+|||+|+.||++++|+|||++.+++++|+.++|.+|++.++++.++..++++..++.
T Consensus 132 ~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~ 211 (257)
T 1lv7_A 132 EQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 211 (257)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 47789999999999888889999999999999999999999999999999999999999999999998888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
.++|||++||.++|++|++.|.+++...|+.+|+..|++++..
T Consensus 212 ~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 212 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhc
Confidence 9999999999999999999999988889999999999987653
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.4e-32 Score=324.38 Aligned_cols=178 Identities=34% Similarity=0.612 Sum_probs=147.9
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
++++++|+..|+++.....+++|+|||+|+.||++++|+|||++.+++++|+.++|.+||+.++.++.+..+.++..++.
T Consensus 322 ~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~ 401 (806)
T 1ypw_A 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp HHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHH
T ss_pred HHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHH
Confidence 47889999999999888899999999999999999999999999999999999999999999999999888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCcccc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDI 650 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~ 650 (713)
.++||+++|+..+|++|++.++++....+...+-. + . .
T Consensus 402 ~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~--~---------------------~----------------~--- 439 (806)
T 1ypw_A 402 ETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET--I---------------------D----------------A--- 439 (806)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHH--C---------------------C----------------H---
T ss_pred hhcCcchHHHHHHHHHHHHHHHhhhccccchhhhc--c---------------------c----------------h---
Confidence 99999999999999999999987654332211100 0 0 0
Q ss_pred cccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 651 EEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
.......++..+|..+++ ...|+.+++.+.++|+++|+||+|++++|++|++++.||++|
T Consensus 440 ~~~~~~~v~~~d~~~al~---~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~ 499 (806)
T 1ypw_A 440 EVMNSLAVTMDDFRWALS---QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499 (806)
T ss_dssp HHHTTCCCCTTHHHHHHH---HSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSS
T ss_pred hhhhhhhhhhhhhhcccc---ccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhc
Confidence 000012234445555554 678889999999999999999999999999999999999875
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=7.1e-33 Score=299.89 Aligned_cols=165 Identities=24% Similarity=0.341 Sum_probs=124.6
Q ss_pred HHHHHHhhhhcccCCCC-CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHH
Q psy6523 490 LREVVETPLLHLDGFDP-RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFEL 567 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~-~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 567 (713)
.++++++||..|+++.. ..+|+||+|||+|+.||++++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..
T Consensus 167 ~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~ 244 (355)
T 2qp9_X 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRT 244 (355)
T ss_dssp HHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 35889999999999854 5679999999999999999999 999999999999999999999999988754 6789999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHH---HHHHhHhhhcccc------cc----cCCCCchhhhhHHHH
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDF---LEAVNKVARCTKI------IN----ADSENPKYIINVKQF 634 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~---~~a~~~~~~~~~~------~~----~~~~~~~~~i~~~~~ 634 (713)
||+.|+||||+||.++|++|++.|+++.......+++ ........++... .+ .........|++.||
T Consensus 245 la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df 324 (355)
T 2qp9_X 245 LGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDF 324 (355)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHH
Confidence 9999999999999999999999999875432100000 0000000000000 00 001112356899999
Q ss_pred HHHHhhcCCCCCcccccccccc
Q psy6523 635 AKFVVDLADSVAPTDIEEGMRV 656 (713)
Q Consensus 635 ~~~~~~~~~sv~~~d~~~~~~~ 656 (713)
.+++..++||++.+++..+..+
T Consensus 325 ~~Al~~~~ps~~~~~~~~~~~~ 346 (355)
T 2qp9_X 325 LKAIKSTRPTVNEDDLLKQEQF 346 (355)
T ss_dssp HHHHHHSCCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999998877654
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=8.4e-32 Score=299.84 Aligned_cols=164 Identities=23% Similarity=0.338 Sum_probs=126.0
Q ss_pred HHHHHhhhhcccCCCC-CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHH
Q psy6523 491 REVVETPLLHLDGFDP-RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELL 568 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~-~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~l 568 (713)
++++++||+.|+++.. ..+|+||+|||+|+.|||+++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..|
T Consensus 252 ~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~l 329 (444)
T 2zan_A 252 RRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQEL 329 (444)
T ss_dssp HHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4889999999999863 5789999999999999999999 999999999999999999999999988764 67899999
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHH--------HHHHHHhH-hhhccc-c-----c---c-cCCCCchhhh
Q psy6523 569 ARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEK--------DFLEAVNK-VARCTK-I-----I---N-ADSENPKYII 629 (713)
Q Consensus 569 a~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~--------d~~~a~~~-~~~~~~-~-----~---~-~~~~~~~~~i 629 (713)
|+.|+||||+||.++|++|++.|+++.......+ +....++. ..++.. . . . ........+|
T Consensus 330 a~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 409 (444)
T 2zan_A 330 GRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVV 409 (444)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCcc
Confidence 9999999999999999999999998753210000 00000000 000000 0 0 0 0111123579
Q ss_pred hHHHHHHHHhhcCCCCCcccccccccc
Q psy6523 630 NVKQFAKFVVDLADSVAPTDIEEGMRV 656 (713)
Q Consensus 630 ~~~~~~~~~~~~~~sv~~~d~~~~~~~ 656 (713)
++.||.+++..++||++++++..+..+
T Consensus 410 ~~~df~~a~~~~~ps~~~~~~~~~~~~ 436 (444)
T 2zan_A 410 SMWDMLRSLSSTKPTVNEQDLLKLKKF 436 (444)
T ss_dssp EHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 999999999999999999999887664
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=274.57 Aligned_cols=125 Identities=38% Similarity=0.591 Sum_probs=106.1
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccc--cHHHHH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDI--RFELLA 569 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~--~~~~la 569 (713)
+.++.+|..|+++....+++||+|||+++.||++++|+|||+..+++++|+.++|.+||+.++++.++..+. .+..++
T Consensus 128 ~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~ 207 (262)
T 2qz4_A 128 QTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA 207 (262)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 668888999999887788999999999999999999999999999999999999999999999988766433 457899
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~ 616 (713)
..+.||+|+||.++|++|++.|.+++...|+.+|+..|++++.++..
T Consensus 208 ~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 208 ELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 99999999999999999999999988899999999999998876543
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.9e-31 Score=275.36 Aligned_cols=124 Identities=45% Similarity=0.793 Sum_probs=116.7
Q ss_pred HHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHH
Q psy6523 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLAR 570 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~ 570 (713)
.+.+..++..++++....+++||+|||+++.||++++|+|||+..++++.|+.++|.+||+.++++..+..+.++..++.
T Consensus 138 ~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~ 217 (285)
T 3h4m_A 138 QRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK 217 (285)
T ss_dssp HHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 46788889999998888899999999999999999999999999999999999999999999999998888899999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 571 LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 571 ~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
.+.||+|+||..+|++|.+.|+++....|+.+|+.+|++++...
T Consensus 218 ~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 218 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999998999999999999987654
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=2e-30 Score=267.52 Aligned_cols=119 Identities=40% Similarity=0.720 Sum_probs=111.4
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
.++.+++++..|+|......++++++||+|+.||++++|+||||+.|++++|+.++|.+||+.++++.++..++++..+|
T Consensus 135 ~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la 214 (254)
T 1ixz_A 135 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 214 (254)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH
Confidence 34778999999999988778999999999999999999999999999999999999999999999998888899999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
..++||+|+||+++|++|++.|.+++...|+.+|+++|+
T Consensus 215 ~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 215 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999999998877789999998875
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=2e-32 Score=325.11 Aligned_cols=164 Identities=28% Similarity=0.475 Sum_probs=106.4
Q ss_pred HHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHH
Q psy6523 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFEL 567 (713)
Q Consensus 488 ~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~ 567 (713)
....+++++||+.||++....+|+||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++++.++..++++..
T Consensus 595 ~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~ 674 (806)
T 1ypw_A 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 674 (806)
T ss_dssp HHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSC
T ss_pred hhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHH
Confidence 44569999999999999888899999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAP 647 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~ 647 (713)
||+.|.||||+||.++|++|++.|+++.... .+....... ................|+..+|.+++...++++++
T Consensus 675 la~~t~g~sgadi~~l~~~a~~~a~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~ 749 (806)
T 1ypw_A 675 LAKMTNGFSGADLTEICQRACKLAIRESIES----EIRRERERQ-TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSD 749 (806)
T ss_dssp SCGGGSSSCCHHHHHHHHHHHHHHHSCC-----------------------------CCTTTTTTSSCCCCCC-------
T ss_pred HHHhccccCHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhc-ccccccccccccccCccCHHHHHHHHHhCCCCCCH
Confidence 9999999999999999999999999764221 000000000 00000111112234568888999999999999999
Q ss_pred ccccccccc
Q psy6523 648 TDIEEGMRV 656 (713)
Q Consensus 648 ~d~~~~~~~ 656 (713)
+++..+..+
T Consensus 750 ~~~~~ye~~ 758 (806)
T 1ypw_A 750 NDIRKYEMF 758 (806)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 988888654
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.96 E-value=8.1e-31 Score=272.42 Aligned_cols=124 Identities=35% Similarity=0.623 Sum_probs=110.2
Q ss_pred HHHhhhhcccCCCC-CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHh
Q psy6523 493 VVETPLLHLDGFDP-RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARL 571 (713)
Q Consensus 493 ~v~~lL~~~d~~~~-~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~ 571 (713)
++++||..|+++.. ..+++||+|||+++.||++++|+|||+..++|++|+.++|.+||+.++++.++..++++..+++.
T Consensus 134 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~ 213 (268)
T 2r62_A 134 TLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKL 213 (268)
T ss_dssp STTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSS
T ss_pred HHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHH
Confidence 45677888887754 34599999999999999999999999999999999999999999999999888788889999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhccc
Q psy6523 572 CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTK 616 (713)
Q Consensus 572 t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~ 616 (713)
+.||+|+||.++|++|++.|.+++...|+.+|+.+|+.++.+...
T Consensus 214 ~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 214 TAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp SCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcch
Confidence 999999999999999999998777778999999998887655543
No 25
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=4.5e-29 Score=261.04 Aligned_cols=119 Identities=40% Similarity=0.720 Sum_probs=110.8
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
..+.+++++.+|++......++++++||+|+.||++++|+|||++.|+|++|+.++|.+||+.++++.++..++++..+|
T Consensus 159 ~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la 238 (278)
T 1iy2_A 159 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 238 (278)
T ss_dssp HHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHH
Confidence 34678889999999887778999999999999999999999999999999999999999999999998888889999999
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 570 RLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 570 ~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
..++||+|+||+++|++|++.|.+++...|+.+|+++|+
T Consensus 239 ~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 239 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999999999999999999988777789999998875
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=9.8e-29 Score=267.72 Aligned_cols=146 Identities=25% Similarity=0.335 Sum_probs=115.1
Q ss_pred HHHHHHhhhhcccCCC--CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHH
Q psy6523 490 LREVVETPLLHLDGFD--PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFE 566 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~--~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 566 (713)
.++++++||..|+++. ...+++||+|||+++.||++++| ||+..+++++|+.++|.+||+.+++..... .+.++.
T Consensus 200 ~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~ 277 (357)
T 3d8b_A 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIE 277 (357)
T ss_dssp HHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHH
Confidence 3588899999999875 34679999999999999999999 999999999999999999999999876544 467889
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCC
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVA 646 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~ 646 (713)
.|++.+.||+|+||..+|++|.+.++++.... +. .+ ........|+..+|.+++..+.|+++
T Consensus 278 ~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~----~~-~~-------------~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 278 QIVQQSDAFSGADMTQLCREASLGPIRSLQTA----DI-AT-------------ITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------------------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh----hh-cc-------------ccccccCCcCHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999998763211 00 00 00112245778888888888888888
Q ss_pred ccccccccc
Q psy6523 647 PTDIEEGMR 655 (713)
Q Consensus 647 ~~d~~~~~~ 655 (713)
++++..+..
T Consensus 340 ~~~~~~~~~ 348 (357)
T 3d8b_A 340 PKDLELYEN 348 (357)
T ss_dssp CCCHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776643
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=2.3e-28 Score=257.87 Aligned_cols=144 Identities=23% Similarity=0.355 Sum_probs=110.4
Q ss_pred HHHHhhhhcccCCCCC---CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHH
Q psy6523 492 EVVETPLLHLDGFDPR---GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFEL 567 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~---~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 567 (713)
++.+.||..|+++... .+++||+|||+|+.||++++| ||+..+++++|+.++|..||+.++++.+.. .+.++..
T Consensus 139 ~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 216 (297)
T 3b9p_A 139 RLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRR 216 (297)
T ss_dssp HHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 6678888888887543 579999999999999999999 999999999999999999999999876543 4567899
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAP 647 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~ 647 (713)
+++.+.||+|+||.++|++|++.|+++..... ..++ .......++..||..++..+.+++++
T Consensus 217 la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~-----~~~~-------------~~~~~~~i~~~d~~~a~~~~~~s~~~ 278 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALAKDAALEPIRELNVEQ-----VKCL-------------DISAMRAITEQDFHSSLKRIRRSVAP 278 (297)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------------------------CCCCCCCCHHHHHHHTTSCCCSSCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh-----cccc-------------cccccCCcCHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999987642110 0000 00112346777777777777777777
Q ss_pred cccccccc
Q psy6523 648 TDIEEGMR 655 (713)
Q Consensus 648 ~d~~~~~~ 655 (713)
+++..+..
T Consensus 279 ~~~~~~~~ 286 (297)
T 3b9p_A 279 QSLNSYEK 286 (297)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=259.67 Aligned_cols=145 Identities=25% Similarity=0.375 Sum_probs=110.4
Q ss_pred HHHHHhhhhcccCCCC--CCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHH
Q psy6523 491 REVVETPLLHLDGFDP--RGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFEL 567 (713)
Q Consensus 491 ~~~v~~lL~~~d~~~~--~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~ 567 (713)
.++.+.||..|+++.. ..+|+||+|||+++.||++++| ||+..|++++|+.++|.+||+.++...... .+.++..
T Consensus 232 ~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~ 309 (389)
T 3vfd_A 232 RRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQ 309 (389)
T ss_dssp HHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 4778888999988754 4579999999999999999999 999999999999999999999999876543 4567899
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccccCCCCchhhhhHHHHHHHHhhcCCCCCc
Q psy6523 568 LARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAP 647 (713)
Q Consensus 568 la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~sv~~ 647 (713)
|+..+.||+++||..||+.|++.++++....+. ..........|...+|..++....++++.
T Consensus 310 la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~------------------~~~~~~~~~~i~~~d~~~al~~~~~s~~~ 371 (389)
T 3vfd_A 310 LARMTDGYSGSDLTALAKDAALGPIRELKPEQV------------------KNMSASEMRNIRLSDFTESLKKIKRSVSP 371 (389)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---------------------CCSSSCCCCCCHHHHHHHHHHCCCSSCH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh------------------hccchhhcCCcCHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999876321100 00111122345667777777777777776
Q ss_pred cccccccc
Q psy6523 648 TDIEEGMR 655 (713)
Q Consensus 648 ~d~~~~~~ 655 (713)
+++..+..
T Consensus 372 ~~l~~~~~ 379 (389)
T 3vfd_A 372 QTLEAYIR 379 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 29
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Probab=99.93 E-value=1.2e-25 Score=229.66 Aligned_cols=184 Identities=27% Similarity=0.498 Sum_probs=156.8
Q ss_pred cccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 193 RIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 193 rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
||+||.++.+.+|||+++|...+.++||||||+++||||||||+........+.|++|.++.... +.....+.|.+++.
T Consensus 2 rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~ 80 (240)
T 1mza_A 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKN-EASKQTLEIKKFIP 80 (240)
T ss_dssp CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSC-CTTCEEEEEEEEEE
T ss_pred ceECCEECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCceecCCC-CCceEEEEEEEEEe
Confidence 79999999999999999998777899999999999999999999765455678899999876543 23346788999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCC-cchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQ-IASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~c 351 (713)
||+|+.. ...+|||||+|.+|+.+++.++|+|||.......+..+.++|||.+...+. .+..|+++.+++++...|
T Consensus 81 hp~y~~~---~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C 157 (240)
T 1mza_A 81 FSRVTSD---PQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLC 157 (240)
T ss_dssp CCCSSCS---SSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHH
T ss_pred CCCccCC---CCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHc
Confidence 9999863 567999999999999999999999999865556788899999999987665 688999999999999999
Q ss_pred hcCCCccc--cccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEA--KLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~--~it~~~~cAG~~~~~~d~c~~ 380 (713)
.....+.. .++..|+|||...++.++|++
T Consensus 158 ~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 188 (240)
T 1mza_A 158 NSQSYYNGDPFITKDMVCAGDAKGQKDSCKG 188 (240)
T ss_dssp TSTTTTTTTTCCCTTEEEEECTTSCCCCCTT
T ss_pred CCcceeCCCCcCCCCeEeecCCCCCCccCCC
Confidence 84222322 578999999988888999987
No 30
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=99.93 E-value=9.6e-26 Score=245.38 Aligned_cols=194 Identities=36% Similarity=0.663 Sum_probs=161.0
Q ss_pred CCCCC-cccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccC-CCCCCceEEEEccccCCcccccc
Q psy6523 184 GCGVP-NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRS-SKRQKDLIVVISEHNRATVYETQ 261 (713)
Q Consensus 184 ~~~~~-~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~-~~~~~~~vv~ig~~~~~~~~d~~ 261 (713)
.||.+ ....||+||..+.+++|||+++|...+.++||||||+++||||||||+.. ......+.|++|..+.... .
T Consensus 107 ~Cg~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~---~ 183 (372)
T 1z8g_A 107 DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASP---H 183 (372)
T ss_dssp CCSCCCCC---CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCT---T
T ss_pred ccCCcCCCCCceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeEeccCC---C
Confidence 47775 34579999999999999999999887889999999999999999999953 2334567889998875432 2
Q ss_pred eEEEEeeEEeeCCCCCcC---CCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchh
Q psy6523 262 IETRRVVKVLTHPKYNAQ---GAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASD 337 (713)
Q Consensus 262 ~~~~~v~~ii~h~~~~~~---~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~ 337 (713)
...+.|.+++.||+|+.. ....+.+|||||+|.+|+.++++++|||||.....+ .+..+.++|||.+...+..+..
T Consensus 184 ~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~ 263 (372)
T 1z8g_A 184 GLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGV 263 (372)
T ss_dssp SEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSB
T ss_pred CcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCce
Confidence 345789999999999421 234678999999999999999999999999876544 5778999999999887788899
Q ss_pred cccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 338 LRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 338 L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|+++.+++++...|+....+...++.+|+|||+..++.++|++
T Consensus 264 L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~G 306 (372)
T 1z8g_A 264 LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQG 306 (372)
T ss_dssp CEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTT
T ss_pred eeEEEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCC
Confidence 9999999999999987655666789999999999889999997
No 31
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2
Probab=99.92 E-value=2.9e-25 Score=228.54 Aligned_cols=183 Identities=32% Similarity=0.543 Sum_probs=154.7
Q ss_pred cccccccccccCcCCchhhhhhc----cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEE
Q psy6523 191 MDRIVGGWTTEVNEYPWVVALEQ----AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRR 266 (713)
Q Consensus 191 ~~rI~~g~~~~~~~~P~~~~l~e----~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~ 266 (713)
..||+||..+.+++|||++++.. ...++||||||+++||||||||+.+ ...+.|++|.++.....+.......
T Consensus 11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~---~~~~~V~~G~~~~~~~~~~~~~~~~ 87 (251)
T 1pyt_D 11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN---TLTYRVALGKNNLEVEDEAGSLYVG 87 (251)
T ss_dssp SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT---TCCEEEEESCSBTTCSCCSSCEEEE
T ss_pred CCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCC---CceEEEEEcccccccCCCCCcEEEE
Confidence 46999999999999999999873 2358999999999999999999974 3457889999886543334456678
Q ss_pred eeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccc
Q psy6523 267 VVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPV 345 (713)
Q Consensus 267 v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~ 345 (713)
|.+++.||+|+.. ...+|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+...+..+..|+++.+++
T Consensus 88 v~~i~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~ 164 (251)
T 1pyt_D 88 VDTIFVHEKWNSF---LVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPV 164 (251)
T ss_dssp EEEEEECTTCBTT---TTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEEC
T ss_pred EEEEEECCCCCCC---CCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEe
Confidence 9999999999863 568999999999999999999999999876544 567799999999988778888999999999
Q ss_pred cChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 346 MSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 346 ~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
++...|.+...+...++..|+|||. .++.++|++
T Consensus 165 ~~~~~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~G 198 (251)
T 1pyt_D 165 VDYATCSQRDWWGTTVKETMVCAGG-DGVISACNG 198 (251)
T ss_dssp BCHHHHTSTTTTTTTCCTTEEEECC-SCSSCCCCS
T ss_pred eCHHHcchhhccCCCcCCCeEEecC-CCCCccCCC
Confidence 9999998765445568899999997 567789987
No 32
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=225.52 Aligned_cols=179 Identities=32% Similarity=0.618 Sum_probs=155.2
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||++++...+.++||||||+++||||||||+........+.|++|..... ....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~~~~-----~~~~~~v~~i~~h 75 (232)
T 2oq5_A 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKP-----SKMKRGLRRIIVH 75 (232)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSBSTT-----CSEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeEECC-----CceEEeEEEEEeC
Confidence 67889999999999999988788999999999999999999998765556778888876532 2356789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. .+++||||++|.+|+.+++.++|||||.....+ .+..+.++|||.+...+..+..|+++.+++++...|.
T Consensus 76 p~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 152 (232)
T 2oq5_A 76 EKYKHP---SHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCN 152 (232)
T ss_dssp TTCCTT---CCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHT
T ss_pred CCCCCC---CCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcC
Confidence 999864 568999999999999999999999999876544 5778999999999887778889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
....+...++..|+||+...++.+.|++
T Consensus 153 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 180 (232)
T 2oq5_A 153 EPQAYNDAITPRMLCAGSLEGKTDACQG 180 (232)
T ss_dssp STTTTTTCCCTTEEEEECTTCSSBCCTT
T ss_pred CccccCCccCCCEEeecCCCCCCccCCC
Confidence 8655666788999999998888899986
No 33
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}
Probab=99.92 E-value=4.6e-25 Score=230.53 Aligned_cols=195 Identities=35% Similarity=0.609 Sum_probs=157.4
Q ss_pred CCCCCCcccccccccccccCcCCchhhhhhcc-----CceeeeeeeechhhHHhhcccccCCC---CCCceEEEEccccC
Q psy6523 183 EGCGVPNRMDRIVGGWTTEVNEYPWVVALEQA-----GKFFCGGTLISDRYVLTAAHCVRSSK---RQKDLIVVISEHNR 254 (713)
Q Consensus 183 ~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~-----~~~~cggslI~~r~vltaa~c~~~~~---~~~~~vv~ig~~~~ 254 (713)
..||.+....||+||..+.+.+|||+++|... ..++||||||+++||||||||+.... ......|.+|+++.
T Consensus 12 ~~CG~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~ 91 (278)
T 2olg_A 12 NDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNT 91 (278)
T ss_dssp SSCSCCCCCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCSBT
T ss_pred hHhCCCCCCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcccC
Confidence 35888666789999999999999999998743 25899999999999999999997531 12346788999876
Q ss_pred Ccccc----------cceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC-ccCCCceEEE
Q psy6523 255 ATVYE----------TQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE-KFTQRTGTVV 323 (713)
Q Consensus 255 ~~~~d----------~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~-~~~~~~~~v~ 323 (713)
....+ .......|.+++.||+|+.... ...+|||||+|.+|+.++++++|||||.... ...+..+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~-~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~ 170 (278)
T 2olg_A 92 ATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSK-DRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVV 170 (278)
T ss_dssp TCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCS-SCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEE
T ss_pred CCCccccccccccCCCCceEEeeEEEEECCCCcCCCC-CCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEE
Confidence 54322 2345678999999999986432 2469999999999999999999999998765 3467889999
Q ss_pred eeccccCCCCcchhcccccccccChhhhhcCCCc-cccccCcccccCCCCCCCCCccc
Q psy6523 324 GWGRVEESGQIASDLRATQVPVMSNQECRQFPGF-EAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 324 GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~-~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|||.+.. +..+..|+++.+++++...|.+.... ...++.+|+|||... +.++|++
T Consensus 171 GWG~t~~-~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~-~~~~C~G 226 (278)
T 2olg_A 171 GWGRTET-GQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEK-AKDSCGG 226 (278)
T ss_dssp ESCCSSS-CCCCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTT-CTTCCCC
T ss_pred cCCcCCC-CCccchhhcccccccCHHHHHHHhccccccCCCceEeeecCC-CCeeCCC
Confidence 9999875 45778999999999999999875432 335889999999765 6899997
No 34
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A
Probab=99.92 E-value=1e-24 Score=222.93 Aligned_cols=179 Identities=26% Similarity=0.526 Sum_probs=153.0
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||++++...+.++||||||+++||||||||+..... .+.|++|..+.... ...+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~--~~~v~~G~~~~~~~----~~~~~v~~i~~H 74 (240)
T 2zgc_A 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMA--QLRLVLGLHTLDSP----GLTFHIKAAIQH 74 (240)
T ss_dssp CBTCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSCGG--GEEEEESCSBSSSC----CEEEEEEEEEEC
T ss_pred CCCCEECCCCCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCCCC--CEEEEecccccCCC----CeEEEEEEEEEC
Confidence 678899999999999999877789999999999999999999976432 67888998875542 266789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+... ...+|||||+|.+|+.++..++|||||..... ..+..+.++|||.+...+..+..|+++.+++++...|.
T Consensus 75 p~y~~~~--~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 152 (240)
T 2zgc_A 75 PRYKPVP--ALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCN 152 (240)
T ss_dssp TTCBCTT--SCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHT
T ss_pred CCCCCCC--CCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhC
Confidence 9998642 26799999999999999999999999987654 46788999999999877888899999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
....+...++.+|+||+....+.+.|++
T Consensus 153 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 180 (240)
T 2zgc_A 153 NSRFWNGSLSPSMVCLAADSKDQAPCKG 180 (240)
T ss_dssp STTTTTTCCCTTEEEEECSSTTCBCCTT
T ss_pred CccccCCCCCCceEeeccCCCCCccCCC
Confidence 7433445688999999998888899987
No 35
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*
Probab=99.92 E-value=7e-25 Score=230.60 Aligned_cols=184 Identities=31% Similarity=0.604 Sum_probs=153.0
Q ss_pred ccccccccCcCCchhhhhhcc------CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccc----ccceE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA------GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVY----ETQIE 263 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~------~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~----d~~~~ 263 (713)
|+||..+.+++|||+++|... ..++||||||+++||||||||+........+.|++|..+..... ....+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~ 80 (290)
T 1fiw_A 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQ 80 (290)
T ss_dssp CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCE
T ss_pred CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCce
Confidence 678999999999999998631 25889999999999999999998665555778889987754211 23456
Q ss_pred EEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc--CCCceEEEeeccccCCCC-cchhccc
Q psy6523 264 TRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF--TQRTGTVVGWGRVEESGQ-IASDLRA 340 (713)
Q Consensus 264 ~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~--~~~~~~v~GwG~~~~~~~-~~~~L~~ 340 (713)
.+.|.+++.||+|+.. .+.+|||||+|.+|+.+++.++|||||...... .+..|.++|||.+...+. .+..|++
T Consensus 81 ~~~V~~i~~Hp~y~~~---~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~ 157 (290)
T 1fiw_A 81 ERYVEKIIIHEKYSAS---SEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQE 157 (290)
T ss_dssp EEEEEEEEECTTCBTT---TTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEE
T ss_pred EEEEEEEEECCCCCCC---CCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeE
Confidence 7889999999999863 568999999999999999999999999765432 467899999999886553 5678999
Q ss_pred ccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 341 TQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 341 ~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+.+++++...|+....+...++..|+|||+..++.++|++
T Consensus 158 ~~v~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~G 197 (290)
T 1fiw_A 158 ARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQG 197 (290)
T ss_dssp EEEEEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTT
T ss_pred EEEEEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCC
Confidence 9999999999987655555789999999998888999997
No 36
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B
Probab=99.92 E-value=6.2e-25 Score=223.52 Aligned_cols=183 Identities=34% Similarity=0.690 Sum_probs=158.7
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCC-CCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKR-QKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~-~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||.++.+++|||++.+...+.++||||||+++||||||||+..... ...+.+++|..+.....+.....+.|.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~ 80 (235)
T 4dgj_A 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVI 80 (235)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEE
T ss_pred CCCCccCCCCCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEE
Confidence 678899999999999999988889999999999999999999976443 3467888998887766666677888999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
||+|+.. ..++||||++|..|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.+++++...|
T Consensus 81 hp~y~~~---~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C 157 (235)
T 4dgj_A 81 NPHYNRR---RKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERC 157 (235)
T ss_dssp CTTCBTT---TTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHH
T ss_pred CCCCCCC---CCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHh
Confidence 9999864 567999999999999999999999999877654 567899999999988888899999999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+.... ...++.+|+|||...++.++|++
T Consensus 158 ~~~~~-~~~~~~~~~Ca~~~~~~~~~C~G 185 (235)
T 4dgj_A 158 QQQMP-EYNITENMICAGYEEGGIDSCQG 185 (235)
T ss_dssp HHHCT-TSCCCTTEEEECCTTCCCBCCTT
T ss_pred hhhcc-CccCCCCeEeecCCCCCCccCCC
Confidence 86432 12478999999999999999987
No 37
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Probab=99.92 E-value=8.7e-25 Score=222.53 Aligned_cols=179 Identities=30% Similarity=0.555 Sum_probs=151.3
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+.. ....|++|.++.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~----~~~~v~~G~~~~~~~-~~~~~~~~v~~~~~H 75 (234)
T 1orf_A 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN----KRSQVILGAHSITRE-EPTKQIMLVKKEFPY 75 (234)
T ss_dssp CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCC----TTCEEEESCSBSSSC-CTTCEEECEEEEEEC
T ss_pred CCCCEECCCCCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCCC----CCceEEEeccccCcC-CCceEEEEEEEEEcC
Confidence 678889999999999999877789999999999999999999864 356788998876543 234567889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. ...+||||++|.+|+.++++++|+|||..... ..+..+.++|||.+...+..+..|+++.+++++...|.
T Consensus 76 p~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~ 152 (234)
T 1orf_A 76 PCYDPA---TREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCN 152 (234)
T ss_dssp TTCCTT---TCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHT
T ss_pred CCCCCC---CCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcC
Confidence 999863 56899999999999999999999999976654 45778999999999887778899999999999999998
Q ss_pred c--CCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 Q--FPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~--~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+ ...+...++..|+|||....+.++|++
T Consensus 153 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 182 (234)
T 1orf_A 153 DRNHYNFNPVIGMNMVCAGSLRGGRDSCNG 182 (234)
T ss_dssp STTTTTTTTCCCTTEEEEECSSCCCBCCTT
T ss_pred CccccccCCccCCCEEEecCCCCCCcCCCC
Confidence 4 322333445599999998888999987
No 38
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*
Probab=99.92 E-value=9.2e-25 Score=223.03 Aligned_cols=182 Identities=32% Similarity=0.669 Sum_probs=157.4
Q ss_pred ccccccccCcCCchhhhhhccC-ceeeeeeeechhhHHhhcccccCCC-----CCCceEEEEccccCCcccccceEEEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG-KFFCGGTLISDRYVLTAAHCVRSSK-----RQKDLIVVISEHNRATVYETQIETRRV 267 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~-~~~cggslI~~r~vltaa~c~~~~~-----~~~~~vv~ig~~~~~~~~d~~~~~~~v 267 (713)
|+||.++.+++|||++++...+ .++||||||+++||||||||+.... ....+.|++|..+...........+.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v 80 (241)
T 3ncl_A 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL 80 (241)
T ss_dssp CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEE
T ss_pred CCCCeECCCCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEE
Confidence 6789999999999999998544 5899999999999999999997542 235678999998877765666778899
Q ss_pred eEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhccccccccc
Q psy6523 268 VKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVM 346 (713)
Q Consensus 268 ~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~ 346 (713)
.+++.||.|+.. .+++|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+...+..+..|+++.++++
T Consensus 81 ~~i~~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~ 157 (241)
T 3ncl_A 81 KRIISHPFFNDF---TFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVI 157 (241)
T ss_dssp EEEEECTTCCTT---TCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEC
T ss_pred EEEEECCCCCCC---CCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEE
Confidence 999999999863 567999999999999999999999999876655 5778999999999888888889999999999
Q ss_pred ChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 347 SNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 347 ~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+...|.... ...++..|+|||...++.++|++
T Consensus 158 ~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 189 (241)
T 3ncl_A 158 NQTTCENLL--PQQITPRMMCVGFLSGGVDSCQG 189 (241)
T ss_dssp CHHHHHHHS--TTTCCTTEEEEECTTCSSBCCTT
T ss_pred CHHHhhhhc--ccCCCCCeEEeCCCCCCCccCCC
Confidence 999998743 34688999999999889999996
No 39
>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...
Probab=99.91 E-value=6.9e-25 Score=230.55 Aligned_cols=185 Identities=37% Similarity=0.688 Sum_probs=148.7
Q ss_pred ccccccccccCcCCchhhhhhc--cCceeeeeeeechhhHHhhcccccCC-----CCCCceEEEEccccCCcccccceEE
Q psy6523 192 DRIVGGWTTEVNEYPWVVALEQ--AGKFFCGGTLISDRYVLTAAHCVRSS-----KRQKDLIVVISEHNRATVYETQIET 264 (713)
Q Consensus 192 ~rI~~g~~~~~~~~P~~~~l~e--~~~~~cggslI~~r~vltaa~c~~~~-----~~~~~~vv~ig~~~~~~~~d~~~~~ 264 (713)
.||+||..+.+++|||+++|.. .+.++||||||+++||||||||+... .....+.|++|.+++....+.....
T Consensus 29 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~~ 108 (289)
T 2bdy_A 29 GRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKI 108 (289)
T ss_dssp --CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEE
T ss_pred CeEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCCccee
Confidence 6999999999999999999963 35689999999999999999999642 2234678999998876543444556
Q ss_pred EEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC----ccCCCceEEEeeccccCC-----CCc-
Q psy6523 265 RRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVGWGRVEES-----GQI- 334 (713)
Q Consensus 265 ~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~----~~~~~~~~v~GwG~~~~~-----~~~- 334 (713)
..|.+++.||+|+.. ..+++|||||+|.+|+.+++.++|||||.... ...+..+.++|||.+... +..
T Consensus 109 ~~v~~i~~Hp~y~~~--~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~ 186 (289)
T 2bdy_A 109 SMLEKIYIHPRYNWR--ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQ 186 (289)
T ss_dssp EEEEEEEECTTCBTT--TTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CC
T ss_pred eeeEEEEECCCCCCC--CCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCccccc
Confidence 789999999999853 35679999999999999999999999997543 235678999999988754 223
Q ss_pred chhcccccccccChhhhhcCCCccccccCcccccCCCC---CCCCCccc
Q psy6523 335 ASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE---GGKDSCQV 380 (713)
Q Consensus 335 ~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~---~~~d~c~~ 380 (713)
+..|+++.+++++...|..... ..++.+|+|||+.. .+.++|++
T Consensus 187 ~~~L~~~~v~i~~~~~C~~~~~--~~i~~~~iCag~~~~~~~~~~~C~G 233 (289)
T 2bdy_A 187 PSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEGKRGDACEG 233 (289)
T ss_dssp CSBCEEEEEEBCCHHHHHHTCS--SCCCTTEEEECCCGGGCCCCBCCTT
T ss_pred cccceEEEEEEECHHHhhcccc--CcCCCCEEeccCCCCCCCCCccCCC
Confidence 6789999999999999987543 35789999999864 37899997
No 40
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A
Probab=99.91 E-value=1.5e-24 Score=227.20 Aligned_cols=193 Identities=30% Similarity=0.612 Sum_probs=158.6
Q ss_pred CCCCCcc-----cccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccc
Q psy6523 184 GCGVPNR-----MDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVY 258 (713)
Q Consensus 184 ~~~~~~~-----~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~ 258 (713)
.||.... ..||+||..+..++|||++++... .++||||||+++||||||||+........+.|++|..+....
T Consensus 21 ~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~- 98 (283)
T 1yc0_A 21 ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRT- 98 (283)
T ss_dssp CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCC-
T ss_pred CcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeeeecccC-
Confidence 4666432 259999999999999999999753 789999999999999999999876545678899999876543
Q ss_pred ccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCC----CCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCC-
Q psy6523 259 ETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESG- 332 (713)
Q Consensus 259 d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~- 332 (713)
+.....+.|.+++.||.|+.. ...++|||||+|.+| +.++..++|||||.....+ .+..+.++|||.+...+
T Consensus 99 ~~~~~~~~v~~i~~hp~y~~~--~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~ 176 (283)
T 1yc0_A 99 TDVTQTFGIEKYIPYTLYSVF--NPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVS 176 (283)
T ss_dssp CSSCEEECEEEEEECTTCCTT--STTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBC
T ss_pred CCceEEEeeEEEEecCccccC--CCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCC
Confidence 223467789999999999862 356799999999999 8899999999999865544 57789999999988654
Q ss_pred CcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 333 QIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 333 ~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..+..|+++.+++++...|.....+...++..|+|||...++.+.|++
T Consensus 177 ~~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~G 224 (283)
T 1yc0_A 177 GYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 224 (283)
T ss_dssp SCCSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTT
T ss_pred ccCchheEeEEEEECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCC
Confidence 357899999999999999987655556688999999998888999987
No 41
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2
Probab=99.91 E-value=7.9e-25 Score=221.04 Aligned_cols=175 Identities=26% Similarity=0.504 Sum_probs=150.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+........+.|.+|..+.. .....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~----~~~~~~~v~~~~~h 76 (222)
T 1eq9_A 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLS----ESGDVYDVEDAVVN 76 (222)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTT----SCCEEEEEEEEEEC
T ss_pred CCCCEECCCCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECceecC----CCCeEEEEEEEEEC
Confidence 67899999999999999987778999999999999999999997654445678889987753 23467889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhh-
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR- 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~- 352 (713)
|+|+.. ...+||||++|.+|+.+++.++|||||.......+..+.++|||.+...+..+..|+++.+++++...|.
T Consensus 77 p~y~~~---~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 153 (222)
T 1eq9_A 77 KNYDDF---LLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCER 153 (222)
T ss_dssp TTCBTT---TTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred CCCCCC---CCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCc
Confidence 999863 5689999999999999999999999998776667788999999999877778889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
... .++..|+||+. ..+.++|++
T Consensus 154 ~~~----~~~~~~~Ca~~-~~~~~~C~G 176 (222)
T 1eq9_A 154 DQW----RVIDSHICTLT-KRGEGACHG 176 (222)
T ss_dssp HSS----SCCTTEEEECC-CTTCBCCTT
T ss_pred ccC----CCCccEEeecC-CCCCeeeeC
Confidence 433 27889999988 557789986
No 42
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...
Probab=99.91 E-value=7.6e-25 Score=223.54 Aligned_cols=182 Identities=34% Similarity=0.652 Sum_probs=152.6
Q ss_pred ccccccccCcCCchhhhhhc---cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ---AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e---~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||.++.+++|||+++|.. ...++||||||+++||||||||+........+.|++|..+.... +.....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i 79 (238)
T 3bg8_A 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEI-KEDTSFFGVQEI 79 (238)
T ss_dssp CBSCEECCTTSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGC-CTTSCCEEEEEE
T ss_pred CCCCeECCCCCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcC-CCCceEEeeEEE
Confidence 67889999999999999975 45689999999999999999999876545567888998876543 223456789999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. ...+|||||+|.+|+.+++.++|||||...+. ..+..|.++|||.+...+..+..|+++.+++++..
T Consensus 80 ~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 156 (238)
T 3bg8_A 80 IIHDQYKMA---ESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNE 156 (238)
T ss_dssp EECTTCCCG---GGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHH
T ss_pred EECCCCCCC---CCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHH
Confidence 999999864 46799999999999999999999999986553 45678999999999887778889999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.+.... ..++..|+|||....+.++|++
T Consensus 157 ~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~G 186 (238)
T 3bg8_A 157 ECQKRYRG-HKITHKMICAGYREGGKDACKG 186 (238)
T ss_dssp HHHHHCTT-SCCCTTEEEECCTTCCCBCCTT
T ss_pred HhhhhhcC-CCCCCCeEeecCCCCCCCcCCC
Confidence 99864321 2478999999998888999987
No 43
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}
Probab=99.91 E-value=2.2e-25 Score=239.80 Aligned_cols=188 Identities=27% Similarity=0.515 Sum_probs=148.3
Q ss_pred CCCCCC----cccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccc
Q psy6523 183 EGCGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVY 258 (713)
Q Consensus 183 ~~~~~~----~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~ 258 (713)
..||.+ .+..||+||.++.+++|||+++|...+.++||||||+++||||||||+......... +..+..+ ....
T Consensus 88 p~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~-~~~~~~~-~~~~ 165 (347)
T 4f4o_C 88 AVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTK-AKDIAPT-LRLY 165 (347)
T ss_dssp ECCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTTSCTTCC-HHHHGGG-CEEE
T ss_pred CCCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCCCCCcce-EEeeeee-eeec
Confidence 348874 356799999999999999999999888999999999999999999999754332211 1111111 1122
Q ss_pred ccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhc
Q psy6523 259 ETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDL 338 (713)
Q Consensus 259 d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L 338 (713)
....+.+.|.+++.||+|+ .+|||||+|.+|+.++++++|||||.......+..+.+.|||.+.. +..++.|
T Consensus 166 ~~~~~~~~V~~i~~HP~y~-------~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~-~~~s~~L 237 (347)
T 4f4o_C 166 VGKKQEVEIEKVIFHPDNS-------TVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNAN-LNFTEHL 237 (347)
T ss_dssp ETTTEEECEEEEEECSCTT-------TCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTT-SSBCSSC
T ss_pred CCCeEEEEEEEEEECcCCC-------CCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCC-CCCCccc
Confidence 3344567899999999886 4799999999999999999999999887777888999999998654 5678899
Q ss_pred ccccccccChhhhhcCC---------------CccccccCcccccCCCCCCCCCccc
Q psy6523 339 RATQVPVMSNQECRQFP---------------GFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 339 ~~~~~~~~~~~~c~~~~---------------~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++.+++++.++|.+.. ++...++.+|+|||+..+++|+|++
T Consensus 238 ~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~G 294 (347)
T 4f4o_C 238 KYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYG 294 (347)
T ss_dssp EEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTT
T ss_pred eEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCC
Confidence 99999999999997532 1233478999999999999999997
No 44
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...
Probab=99.91 E-value=6.7e-25 Score=226.17 Aligned_cols=183 Identities=38% Similarity=0.667 Sum_probs=154.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||+++|...+.++||||||+++||||||||+........+.|++|.++.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~h 79 (254)
T 2bz6_H 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEH-DGDEQSRRVAQVIIP 79 (254)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCC-CSCCEEEEEEEEEEE
T ss_pred CCCCEECCCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCcccCCC-CCCcEEEEEEEEEEC
Confidence 6789999999999999998777899999999999999999999876554568899999876543 234567889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC----ccCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
|+|+.. ...+|||||+|.+|+.+++.++|||||.... ...+..+.++|||.+...+..+..|+++.+++++..
T Consensus 80 p~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~ 156 (254)
T 2bz6_H 80 STYVPG---TTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQ 156 (254)
T ss_dssp TTCCTT---SCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHH
T ss_pred CCCCCC---CCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHH
Confidence 999863 5689999999999999999999999997542 234678999999999888888889999999999999
Q ss_pred hhhcCCCc---cccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGF---EAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~---~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.+.... ...++..|+|||...++.+.|++
T Consensus 157 ~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 190 (254)
T 2bz6_H 157 DCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKG 190 (254)
T ss_dssp HHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGG
T ss_pred HHhhhhhccccCCccCCCEEeecCCCCCCccccc
Confidence 99764322 23578999999998888899987
No 45
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2
Probab=99.91 E-value=1.9e-24 Score=220.41 Aligned_cols=181 Identities=34% Similarity=0.673 Sum_probs=150.9
Q ss_pred ccccccccCcCCchhhhhhcc--Cc--eeeeeeeechhhHHhhcccccCCC--CCCceEEEEccccCCcccccceEEEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--GK--FFCGGTLISDRYVLTAAHCVRSSK--RQKDLIVVISEHNRATVYETQIETRRV 267 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~~--~~cggslI~~r~vltaa~c~~~~~--~~~~~vv~ig~~~~~~~~d~~~~~~~v 267 (713)
|+||.++.+++|||++++... +. ..||||||+++||||||||+.... ....+.|++|..+.... +...+.+.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v 79 (237)
T 2f91_A 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVN-EGSEQIITV 79 (237)
T ss_dssp CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSC-CSCCEEEEE
T ss_pred CCCccCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCC-CCccEEEEE
Confidence 678999999999999998753 22 349999999999999999997642 33467889998876532 233467889
Q ss_pred eEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccC
Q psy6523 268 VKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMS 347 (713)
Q Consensus 268 ~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~ 347 (713)
.+++.||+|+.. ...+|||||+|.+|+.+++.++|||||.... ..+..+.++|||.+...+..++.|+++.+++++
T Consensus 80 ~~i~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~ 155 (237)
T 2f91_A 80 SKIILHENFDYN---LLDNDISLLKLSGSLTFNDNVAPIALPEQGH-TATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVS 155 (237)
T ss_dssp EEEEECTTCCTT---TCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-CCCSEEEEEESCCSSTTCCCCSBCEEEEEEEEC
T ss_pred EEEEECCCCCCC---CCCCcEEEEEECCCcccCCceeeccCCCCCC-CCCCcEEEEECCcCCCCCCccceeeEEEEeEcC
Confidence 999999999863 5689999999999999999999999997654 567789999999998888888999999999999
Q ss_pred hhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 348 NQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 348 ~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...|+.... ...++..|+|||....+.+.|++
T Consensus 156 ~~~C~~~~~-~~~~~~~~~Ca~~~~~~~~~C~G 187 (237)
T 2f91_A 156 DEDCRADYG-ADEILDSMICAGVPEGGKDSCQG 187 (237)
T ss_dssp HHHHHHHHC-TTTSCTTEEEECCTTCCCBCCTT
T ss_pred HHHhhhhhC-CCCcCCCeEEEecCCCCCCCCCC
Confidence 999986433 23578999999998888999987
No 46
>2jde_A Urokinase-type plasminogen activator; plasminogen activation, EGF-like domain, blood coagulation, inhibitor complex, UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Probab=99.91 E-value=1.5e-24 Score=226.39 Aligned_cols=195 Identities=28% Similarity=0.519 Sum_probs=156.8
Q ss_pred CCCCC--cccccccccccccCcCCchhhhhhcc---C--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCc
Q psy6523 184 GCGVP--NRMDRIVGGWTTEVNEYPWVVALEQA---G--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRAT 256 (713)
Q Consensus 184 ~~~~~--~~~~rI~~g~~~~~~~~P~~~~l~e~---~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~ 256 (713)
.||.+ ....||+||..+.+++|||++.|... + .++||||||+++||||||||+........+.|++|..+...
T Consensus 12 ~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~ 91 (276)
T 2jde_A 12 QCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNS 91 (276)
T ss_dssp ------------CBSSEECCGGGSTTEEEEEEECCCCCEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSS
T ss_pred CCCCCCCCCCCCeECCEECCCCCCCeEEEEEEecCCCccceeeeeEEeeCCEEEEcHHhccCCCCcccEEEEecccccCC
Confidence 47764 23469999999999999999998632 2 47899999999999999999987666677899999988655
Q ss_pred ccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCC----CCCCCCcccccCCCCCCcc-CCCceEEEeeccccCC
Q psy6523 257 VYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEES 331 (713)
Q Consensus 257 ~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~ 331 (713)
.. .....+.|.+++.||+|+... ..+++|||||+|.+| +.++..++|||||.....+ .+..+.++|||.+...
T Consensus 92 ~~-~~~~~~~v~~i~~hp~y~~~~-~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~ 169 (276)
T 2jde_A 92 NT-QGEMKFEVENLILHKDYSADT-LAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 169 (276)
T ss_dssp CC-TTCEEEEEEEEEECTTCEECS-SCEESCCEEEEEECTTSCCCCCBTTBCCCBCCBTTBCCCTTCEEEEEESCCSSTT
T ss_pred CC-CCcEEEEEEEEEECCCCCCCC-CcCCCcEEEEEeCCccccccccCCceEccCCCCcccCCCCCCEEEEEECCccCCC
Confidence 42 334567899999999998643 235799999999999 7899999999999764443 5678999999998876
Q ss_pred CC-cchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 332 GQ-IASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 332 ~~-~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+. .+..|+++.+++++...|.....+...++..|+|||...++.++|++
T Consensus 170 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 219 (276)
T 2jde_A 170 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 219 (276)
T ss_dssp CSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCBCCTT
T ss_pred CcccchhhhhceecccChHHhCcccccCccCCCCeEEecCCCCCCccccc
Confidence 54 68899999999999999998666666789999999999889999997
No 47
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...
Probab=99.91 E-value=2.8e-24 Score=219.62 Aligned_cols=181 Identities=31% Similarity=0.569 Sum_probs=150.9
Q ss_pred ccccccccCcCCchhhhhhc-cC---ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ-AG---KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e-~~---~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+++|||+++|.. .+ .++||||||+++||||||||+... ..+.|++|.++.... +...+.+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~---~~~~v~~G~~~~~~~-~~~~~~~~v~~ 76 (240)
T 1gvk_B 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRE---LTFRVVVGEHNLNQN-NGTEQYVGVQK 76 (240)
T ss_dssp CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSC---CCEEEEESCSBTTSC-CSCCEEEEEEE
T ss_pred CCCCeECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCCC---cceEEEECCeecccC-CCcceEEEEEE
Confidence 67889999999999999974 23 489999999999999999999753 467899999876543 23345678999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.... ...+|||||+|.+|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.+++++.
T Consensus 77 i~~Hp~y~~~~~-~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 155 (240)
T 1gvk_B 77 IVVHPYWNTDDV-AAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDY 155 (240)
T ss_dssp EEECTTCCTTCG-GGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECH
T ss_pred EEECCCCCCCCC-CCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcH
Confidence 999999986421 227899999999999999999999999876543 577899999999988888889999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|.....+...++..|+||| ..++.++|++
T Consensus 156 ~~C~~~~~~~~~~~~~~~Ca~-~~~~~~~C~G 186 (240)
T 1gvk_B 156 AICSSSSYWGSTVKNSMVCAG-GDGVRSGCQG 186 (240)
T ss_dssp HHHTSTTTTGGGCCTTEEEEC-CSSSCBCCTT
T ss_pred HHhccccccCccCCcceEeec-CCCCCcccCC
Confidence 999876545556889999999 4567889986
No 48
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*
Probab=99.91 E-value=1.8e-24 Score=223.59 Aligned_cols=183 Identities=33% Similarity=0.677 Sum_probs=155.4
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++..++|||++++...+.++|||+||+++||||||||+........+.|++|..+..... .....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~-~~~~~~~v~~i~~h 79 (261)
T 3gyl_B 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYS-EDAKVSTLKDIIPH 79 (261)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCSBTTSCC-SSCEEECEEEEEEC
T ss_pred CCCCcCCCCCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCceeccCCC-CCceEEEEEEEEEC
Confidence 67899999999999999998888999999999999999999997666666788999988765432 33456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCc--chhcccccccccChhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQI--ASDLRATQVPVMSNQE 350 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~--~~~L~~~~~~~~~~~~ 350 (713)
|+|+.. ...+|||||+|.+|+.++..++|||||.....+ .+..|.++|||.+...... +..|+++.+++++...
T Consensus 80 p~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (261)
T 3gyl_B 80 PSYLQE---GSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRET 156 (261)
T ss_dssp TTCCST---TCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHH
T ss_pred CCcCCC---CCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHH
Confidence 999863 567999999999999999999999999876655 5678999999998765543 7889999999999999
Q ss_pred hhcCCC------ccccccCcccccCCCCCCCCCccc
Q psy6523 351 CRQFPG------FEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 351 c~~~~~------~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|..... ....++.+|+|||....+.+.|++
T Consensus 157 C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 192 (261)
T 3gyl_B 157 CNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQG 192 (261)
T ss_dssp HHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTT
T ss_pred hhhhhcccccccccccccCCeEeeCCCCCCCccCCC
Confidence 986433 223578999999999899999987
No 49
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2
Probab=99.91 E-value=2.8e-24 Score=219.78 Aligned_cols=181 Identities=34% Similarity=0.628 Sum_probs=150.2
Q ss_pred ccccccccCcCCchhhhhhcc--C--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--G--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||..+.+++|||+++|... + .++||||||+++||||||||+.. ...+.|++|.++.... +.....+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~~V~~G~~~~~~~-~~~~~~~~v~~ 76 (241)
T 1bru_P 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS---SRTYRVVLGRHSLSTN-EPGSLAVKVSK 76 (241)
T ss_dssp CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT---TSCEEEEESCSBSSSC-CTTCEEEEEEE
T ss_pred CCCCeECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhccc---CCceEEEEEcccccCC-CCccEEEEEEE
Confidence 678899999999999999752 3 38999999999999999999972 2567899998876543 23346678999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.... ...+|||||+|.+|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.+++++.
T Consensus 77 i~~Hp~y~~~~~-~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~ 155 (241)
T 1bru_P 77 LVVHQDWNSNQL-SNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDY 155 (241)
T ss_dssp EEECTTCCTTCG-GGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECH
T ss_pred EEECCCCCCCCC-CCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecH
Confidence 999999986421 123999999999999999999999999876544 567899999999988777888999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|.+...+...++..|+||| ..++.++|++
T Consensus 156 ~~C~~~~~~~~~~~~~~~Ca~-~~~~~~~C~G 186 (241)
T 1bru_P 156 ATCSKPGWWGSTVKTNMICAG-GDGIISSCNG 186 (241)
T ss_dssp HHHTSTTTTGGGCCTTEEEEC-CSSSSBCCTT
T ss_pred HHhCcccccCCcCCCceEeec-CCCCCccCCC
Confidence 999886545556889999999 4567889986
No 50
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Probab=99.91 E-value=2.7e-24 Score=217.27 Aligned_cols=175 Identities=26% Similarity=0.490 Sum_probs=148.8
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+.+ ...|.+|..+.....+.....+.+.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~-----~~~v~~g~~~~~~~~~~~~~~~~v~~~~~H 75 (223)
T 2bdg_A 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN-----SYTIGLGLHSLEADQEPGSQMVEASLSVRH 75 (223)
T ss_dssp CBTCEECCTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCCS-----SEEEEESCSBSCGGGCTTCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCCC-----CeEEEEeeeecCCCCCCCcEEEEEEEEEeC
Confidence 678899999999999999877789999999999999999999853 467888887765444445567889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhhc
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ 353 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~ 353 (713)
|+|+.. ...+|||||+|.+|+.+++.++|||||... ...+..+.++|||.+... ..+..|+++.+++++...|++
T Consensus 76 p~y~~~---~~~~DIALl~L~~~v~~~~~v~pi~l~~~~-~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C~~ 150 (223)
T 2bdg_A 76 PEYNRP---LLANDLMLIKLDESVSESDTIRSISIASQC-PTAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSK 150 (223)
T ss_dssp TTTTSS---TTCSCCEEEEESSCCCCCSSCCCCCBCSSC-CCTTCEEEEEESCCCTTS-CCCSBCEEEEEEBCCHHHHHH
T ss_pred CCCCCC---CCcCcEEEEEECCcccCCCceecccCCCCC-CCCCCEEEEEeCcccCCC-CCCCcceEEEEEEeCHHHhhh
Confidence 999863 568999999999999999999999999754 356778999999988754 667899999999999999987
Q ss_pred CCCccccccCcccccCCCCCCCCCccc
Q psy6523 354 FPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 354 ~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.. ...++..|+||+....+.+.|++
T Consensus 151 ~~--~~~~~~~~~Ca~~~~~~~~~C~G 175 (223)
T 2bdg_A 151 LY--DPLYHPSMFCAGGGQDQKDSCNG 175 (223)
T ss_dssp HS--TTTCCTTEEEECCSTTCCBCCTT
T ss_pred hh--CCCCCCCeEeccCCCCCCCcCCC
Confidence 43 23578999999998888999986
No 51
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Probab=99.91 E-value=2e-24 Score=218.29 Aligned_cols=174 Identities=34% Similarity=0.646 Sum_probs=149.2
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||++++...+.++||||||+++||||||||+. ..+.|++|..+.... +...+.+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 74 (223)
T 1lo6_A 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK-----PNLQVFLGKHNLRQR-ESSQEQSSVVRAVIH 74 (223)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC-----TTCEEEESCSBTTSC-CTTCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCC-----CCeEEEEcceecCCC-CCCcEEEEEEEEEEC
Confidence 67888999999999999987778999999999999999999985 356788998876543 233456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhhc
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ 353 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~ 353 (713)
|+|+.. .+++|||||+|.+|+.+++.++|+|||.... ..+..+.++|||.+. .+..+..|+++.+++++...|..
T Consensus 75 p~y~~~---~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~~~~~~~C~~ 149 (223)
T 1lo6_A 75 PDYDAA---SHDQDIMLLRLARPAKLSELIQPLPLERDCS-ANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEH 149 (223)
T ss_dssp TTCCTT---TCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-CCCCEEEEEESSCCT-TSSCCSBCEEEEEEEECHHHHHH
T ss_pred CCCCCC---CCcCeEEEEEECCcccCCCceeecccCCCCC-CCCCEEEEEEECCCC-CCCcCceeeEEEEEEeCHHHhhh
Confidence 999863 5689999999999999999999999997654 567789999999987 67778899999999999999986
Q ss_pred CCCccccccCcccccCCCCCCCCCccc
Q psy6523 354 FPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 354 ~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.. ...++.+|+||+....+.+.|++
T Consensus 150 ~~--~~~~~~~~~Ca~~~~~~~~~C~G 174 (223)
T 1lo6_A 150 AY--PGQITQNMLCAGDEKYGKDSCQG 174 (223)
T ss_dssp HS--TTTCCTTEEEEECTTTCCBCCTT
T ss_pred hh--CCCCCCCeEEeecCCCCCeeccc
Confidence 43 23578999999998888999986
No 52
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*
Probab=99.91 E-value=2e-24 Score=220.80 Aligned_cols=182 Identities=35% Similarity=0.662 Sum_probs=152.1
Q ss_pred ccccccccCcCCchhhhhhc---cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ---AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e---~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||.++..++|||+++|.. ...++||||||+++||||||||+........+.|++|..+..... .....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~-~~~~~~~v~~i 79 (241)
T 2any_A 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDIT-KDTPFSQIKEI 79 (241)
T ss_dssp CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCSBGGGCC-TTSCCBCEEEE
T ss_pred CCCCEECCCCCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeeeeccccc-cCceEEeeEEE
Confidence 67889999999999999975 456899999999999999999998765556678888887754432 22345678999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. ...+|||||+|.+|+.+++.++|||||..... ..+..|.++|||.+...+..+..|+++.+++++..
T Consensus 80 ~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 156 (241)
T 2any_A 80 IIHQNYKVS---EGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNE 156 (241)
T ss_dssp EECTTCCTT---SSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHH
T ss_pred EECCCCCCC---CCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHH
Confidence 999999864 46799999999999999999999999987654 45678999999999887778889999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|...... ..++..|+||+....+.+.|++
T Consensus 157 ~C~~~~~~-~~~~~~~~Ca~~~~~~~~~C~G 186 (241)
T 2any_A 157 ECQKRYQD-YKITQRMVCAGYKEGGKDACKG 186 (241)
T ss_dssp HHHTTSCT-TCSCTTEEEECCTTCCCBCCTT
T ss_pred HhhhHhcc-CCCCcCcEeecCCCCCCccCCC
Confidence 99875322 2478999999998888999986
No 53
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=4.8e-25 Score=232.17 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=71.9
Q ss_pred HHHHhhhhcccCCC-----------CCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc
Q psy6523 492 EVVETPLLHLDGFD-----------PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE 560 (713)
Q Consensus 492 ~~v~~lL~~~d~~~-----------~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~ 560 (713)
++.+.||+.||+.. ...+|+||+|||+++.||+|++||||||+.|+ +|+.++|.+|++.++..
T Consensus 127 ~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~---- 200 (293)
T 3t15_A 127 MVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT---- 200 (293)
T ss_dssp HHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG----
T ss_pred HHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC----
Confidence 66678888887443 45679999999999999999999999999997 58999999999988864
Q ss_pred ccccHHHHHHhCCCCCHHHHHHH
Q psy6523 561 RDIRFELLARLCPNSTGAEIRSV 583 (713)
Q Consensus 561 ~~~~~~~la~~t~g~sgadi~~l 583 (713)
.+++++.+++.++||+|+||..+
T Consensus 201 ~~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 201 DNVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp GCCCHHHHHHHHHHSCSCCHHHH
T ss_pred CCCCHHHHHHHhCCCCcccHHHH
Confidence 35778999999999999999753
No 54
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A
Probab=99.91 E-value=2.9e-24 Score=216.95 Aligned_cols=174 Identities=36% Similarity=0.673 Sum_probs=148.4
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++...+|||++++.. +.++||||||+++||||||||+. ....|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 73 (222)
T 1hj8_A 1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYK-----SRVEVRLGEHNIKVT-EGSEQFISSSRVIRH 73 (222)
T ss_dssp CBSCEECCTTSCTTEEEEES-SSEEEEEEEEETTEEEECGGGCC-----SSCEEEESCSBTTSC-CSCCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCEEEEEEc-CCcEEEeEEecCCEEEECHHhcC-----CCeEEEEcccccccC-CCCcEEEEEEEEEEC
Confidence 67888999999999999964 67899999999999999999985 356788998876533 233456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhhc
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ 353 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~ 353 (713)
|+|+.. ..++|||||+|.+|+.+++.++|||||... ...+..+.+.|||.+...+..+..|+++.+++++...|+.
T Consensus 74 p~y~~~---~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~ 149 (222)
T 1hj8_A 74 PNYSSY---NIDNDIMLIKLSKPATLNTYVQPVALPTSC-APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNN 149 (222)
T ss_dssp TTCBTT---TTBSCCEEEEESSCCCCSSSCCCCBCCSSC-CCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHH
T ss_pred CCCCCC---CCCCcEEEEEECCcccCCCceeccCCCCCC-CCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhh
Confidence 999863 568999999999999999999999999754 4567789999999998777788999999999999999986
Q ss_pred CCCccccccCcccccCCCCCCCCCccc
Q psy6523 354 FPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 354 ~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.. ...++..|+||+....+.+.|++
T Consensus 150 ~~--~~~~~~~~~Ca~~~~~~~~~C~G 174 (222)
T 1hj8_A 150 SY--PGMITNAMFCAGYLEGGKDSCQG 174 (222)
T ss_dssp HS--TTCCCTTEEEESCTTSSCBCCTT
T ss_pred hc--cCCCCCCeEEeccCCCCCccCCC
Confidence 42 23578999999998888999987
No 55
>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A
Probab=99.91 E-value=5e-24 Score=215.96 Aligned_cols=180 Identities=27% Similarity=0.582 Sum_probs=150.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++.+...+.++||||||+++||||||||+.... ...+.|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~h 78 (228)
T 2xw9_A 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA-DGKVQVLLGAHSLSQP-EPSKRLYDVLRAVPH 78 (228)
T ss_dssp CBCC-CCCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCT-TCCEEEEESCSBSSSC-CTTCEEEEEEEEEEC
T ss_pred CCCCeECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCC-CCceEEEEcccccCCC-CCcceEEEEEEEEeC
Confidence 67888999999999999988788999999999999999999997532 3467889998876543 223456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. ...+||||++|.+|+.+++.++|+|||..... ..+..+.++|||.+...+..+..|+++.+++++...|+
T Consensus 79 p~y~~~---~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~ 155 (228)
T 2xw9_A 79 PDSQPD---TIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCN 155 (228)
T ss_dssp TTCCTT---CCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHT
T ss_pred CCCCCC---CCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhc
Confidence 999863 56899999999999999999999999986544 45778999999999887778899999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+.......++..|+||+. .+.+.|++
T Consensus 156 ~~~~~~~~~~~~~~Ca~~--~~~~~C~G 181 (228)
T 2xw9_A 156 RRTHHDGAITERLMCAES--NRRDSCKG 181 (228)
T ss_dssp STTTTTTCCCTTEEEECC--SSCBCCTT
T ss_pred CccccCCcccCCEEecCC--CCCccCCC
Confidence 765544568899999986 56788986
No 56
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Probab=99.91 E-value=2.7e-24 Score=220.52 Aligned_cols=178 Identities=35% Similarity=0.705 Sum_probs=147.0
Q ss_pred cccccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 191 MDRIVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 191 ~~rI~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
..||++|..+.+++|||++++.. .+.++||||||+++||||||||+.. ....|++|..+.... +.....+.|.+
T Consensus 13 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~----~~~~v~~G~~~~~~~-~~~~~~~~v~~ 87 (245)
T 1t8o_A 13 LSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT----TSDVVVAGEFDQGSS-SEKIQKLKIAK 87 (245)
T ss_dssp ---CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCC----TTSEEEESCSBTTCS-SSCCEEEEEEE
T ss_pred CCceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcC----CCcEEEEeeeecCCC-CCCcEEEEEEE
Confidence 46999999999999999999975 4678999999999999999999865 356788898876543 23346788999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCC-cchhcccccccccC
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQ-IASDLRATQVPVMS 347 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~-~~~~L~~~~~~~~~ 347 (713)
++.||+|+.. ...+|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+...+. .+..|+++.+++++
T Consensus 88 i~~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~ 164 (245)
T 1t8o_A 88 VFKNSKYNSL---TINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLS 164 (245)
T ss_dssp EEECTTCCTT---TCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEEC
T ss_pred EEeCCCCCCC---CCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEc
Confidence 9999999863 568999999999999999999999999876544 678899999999886554 67899999999999
Q ss_pred hhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 348 NQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 348 ~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...|.+.. ...++..|+||| ..+.++|++
T Consensus 165 ~~~C~~~~--~~~~~~~~~Ca~--~~~~~~C~G 193 (245)
T 1t8o_A 165 NTNCKKYW--GTKIKDAMICAG--ASGVSSCMG 193 (245)
T ss_dssp HHHHHHHH--GGGCCTTEEEEE--CSSCBCCTT
T ss_pred chhhhHhh--cCcCCCceEEcc--CCCCccCcc
Confidence 99998743 235789999999 467789986
No 57
>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Probab=99.91 E-value=3.5e-24 Score=217.20 Aligned_cols=177 Identities=37% Similarity=0.706 Sum_probs=149.4
Q ss_pred ccccccccCcCCchhhhhhcc-CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~-~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||.++.+++|||++++... +.++||||||+++||||||||+.. ...+.|++|..+.... +.....+.|.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~~V~~G~~~~~~~-~~~~~~~~v~~i~~ 76 (228)
T 1fxy_A 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ---AKRFKVRVGDRNTEQE-EGGEAVHEVEVVIK 76 (228)
T ss_dssp CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTS---CSSCEEEEECSCTTTC-CCCEEEEEEEEEEE
T ss_pred CCCCEECCCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCC---CCcEEEEECccCcccc-CCCcEEEEEEEEEE
Confidence 678999999999999998754 568999999999999999999953 2467888998876543 23345678999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCC-cchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQ-IASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~c 351 (713)
||+|+.. .+.+|||||+|.+|+.++..++|+|||... ...+..+.++|||.+...+. .+..|+++.+++++...|
T Consensus 77 Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C 152 (228)
T 1fxy_A 77 HNRFTKE---TYDFDIAVLRLKTPITFRMNVAPASLPTAP-PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKC 152 (228)
T ss_dssp CTTCBTT---TTBTCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHH
T ss_pred CCCCCCC---CCcCcEEEEEECCcccCCCceeccCCCCCC-CCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHh
Confidence 9999863 568999999999999999999999999754 34678899999999887665 788999999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.+.. ...++..|+|||....+.+.|++
T Consensus 153 ~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 179 (228)
T 1fxy_A 153 EASY--PGKITSNMFCVGFLEGGKDSCQG 179 (228)
T ss_dssp HHHS--TTTCCTTEEEESCTTCSCBCCTT
T ss_pred Hhhc--CCCCCCCEEEeccCCCCCccccC
Confidence 8643 23578999999998888999997
No 58
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Probab=99.91 E-value=2.7e-24 Score=219.80 Aligned_cols=183 Identities=24% Similarity=0.520 Sum_probs=151.9
Q ss_pred ccccccccCcCCchhhhhhccC---ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG---KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~---~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||.++.+++|||++++.... .++||||||+++||||||||+... ....+.|++|..+.... ...+.+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~-~~~~~~v~~G~~~~~~~--~~~~~~~v~~i 77 (241)
T 1m9u_A 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGV-LPNNIRVIAGLWQQSDT--SGTQTANVDSY 77 (241)
T ss_dssp CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTC-CGGGEEEEESCSBTTCC--TTCEEEEEEEE
T ss_pred CCCCeECCCCCcCeEEEEEecCCceeeeeEEEEEeCCEEEecHHhCCCC-CcceEEEEEEeecCCCC--CCceEEEEEEE
Confidence 6788999999999999988543 489999999999999999999764 23467889998876642 23567889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCC-CCccCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL-GEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. ...+.+|||||+|.+|+.++..++|+|||.. ...+.+..+.++|||.+...+..+..|+++.+++++..
T Consensus 78 ~~hp~y~~~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 156 (241)
T 1m9u_A 78 TMHENYGAG-TASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTA 156 (241)
T ss_dssp EECTTTTCS-SSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHH
T ss_pred EeCCCcCCC-CCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHH
Confidence 999999432 2357899999999999999999999999987 44557888999999999887788899999999999999
Q ss_pred hhhcC-CCc-cccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQF-PGF-EAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~-~~~-~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|... ... ...++.+|+||+...++.++|++
T Consensus 157 ~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 189 (241)
T 1m9u_A 157 QCTAAMVGVGGANIWDNHICVQDPAGNTGACNG 189 (241)
T ss_dssp HHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTT
T ss_pred HhhhhhcccCCCcccCCcEEECcCCCCCeeecC
Confidence 99863 221 12378999999998888999986
No 59
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}
Probab=99.91 E-value=3.3e-24 Score=234.35 Aligned_cols=194 Identities=32% Similarity=0.589 Sum_probs=158.0
Q ss_pred CCCCCCcc---ccccccc-ccccCcCCchhhhhhcc--------CceeeeeeeechhhHHhhcccccCCCC-CCceEEEE
Q psy6523 183 EGCGVPNR---MDRIVGG-WTTEVNEYPWVVALEQA--------GKFFCGGTLISDRYVLTAAHCVRSSKR-QKDLIVVI 249 (713)
Q Consensus 183 ~~~~~~~~---~~rI~~g-~~~~~~~~P~~~~l~e~--------~~~~cggslI~~r~vltaa~c~~~~~~-~~~~vv~i 249 (713)
..||.... ..||+|| ..+..++|||+++|... ..++||||||+++||||||||+..... ...+.|++
T Consensus 116 ~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~ 195 (394)
T 2b9l_A 116 SFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRA 195 (394)
T ss_dssp CCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEE
T ss_pred CCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEEe
Confidence 45887543 3499999 79999999999988643 358999999999999999999976432 24678999
Q ss_pred ccccCCccccc-ceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 250 SEHNRATVYET-QIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 250 g~~~~~~~~d~-~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
|+++.....+. ..+.+.|.+++.||+|+.. ...+|||||+|.+|+.+++.++|||||.....+.+..+.++|||.+
T Consensus 196 G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~---~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t 272 (394)
T 2b9l_A 196 GEWDTLTEKERLPYQERKIRQVIIHSNFNPK---TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKK 272 (394)
T ss_dssp SCCBTTCCCSSSCCEEEEEEEEEECTTCCTT---TCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTT
T ss_pred ceeeccCCcCCCccEEEEEEEEEECCCCCCC---ccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCc
Confidence 99886544332 3467899999999999863 5679999999999999999999999998777777788999999988
Q ss_pred cCC--CCcchhcccccccccChhhhhcCC-----CccccccCcccccCCCCCCCCCccc
Q psy6523 329 EES--GQIASDLRATQVPVMSNQECRQFP-----GFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 329 ~~~--~~~~~~L~~~~~~~~~~~~c~~~~-----~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
... +..+..|+++.+++++..+|.+.. +....++.+|+|||.. .+.|+|++
T Consensus 273 ~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~-~g~d~C~G 330 (394)
T 2b9l_A 273 EFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE-QGKDTCTG 330 (394)
T ss_dssp TTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCB-SSCSCCSS
T ss_pred cCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCC-CCCcCCCC
Confidence 743 456789999999999999997632 1223578999999975 47899997
No 60
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Probab=99.91 E-value=1.7e-24 Score=220.45 Aligned_cols=180 Identities=37% Similarity=0.746 Sum_probs=152.2
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+.+|||++++.....++||||||+++||||||||+... ..+.|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~---~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 76 (235)
T 2wph_S 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETG---VKITVVAGEHNIEET-EHTEQKRNVIRIIPH 76 (235)
T ss_dssp CBSCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTT---SCCEEEESCCBTTSC-CSCCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcCC---CCEEEEEcccccCCC-CCCcEEeeeEEEEeC
Confidence 6788999999999999998777899999999999999999999653 357888998876543 233467789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc---cCCCceEEEeeccccCCCCcchhcccccccccChhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK---FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQE 350 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~---~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~ 350 (713)
|+|+.. ...+.+|||||+|.+|+.+++.++|||||..... ..+..+.++|||.+...+..+..|+++.+++++...
T Consensus 77 p~y~~~-~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~ 155 (235)
T 2wph_S 77 HNFNAA-INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRAT 155 (235)
T ss_dssp TTTTSS-SSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHH
T ss_pred CCCccc-CCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHH
Confidence 999863 2356799999999999999999999999975432 346779999999998888888999999999999999
Q ss_pred hhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 351 CRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 351 c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|.+... ..++.+|+|||....+.+.|++
T Consensus 156 C~~~~~--~~~~~~~~Ca~~~~~~~~~C~G 183 (235)
T 2wph_S 156 CLRSTK--FTITNNMFCAGFHEGGRDSCQG 183 (235)
T ss_dssp HHHTCS--SCCCTTEEEESCTTCSCBCCTT
T ss_pred hcCccc--CCCCCCEEEeCCCCCCCccCCC
Confidence 987543 3578999999998888999987
No 61
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*
Probab=99.91 E-value=4.1e-24 Score=216.52 Aligned_cols=175 Identities=28% Similarity=0.557 Sum_probs=147.9
Q ss_pred ccccccccCcCCchhhhhhcc-CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~-~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||.++.+++|||++++... +.++||||||+++||||||||+. ....|++|..+.....+.....+.+.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~~~~~~~~~~v~~~~~ 75 (227)
T 2psx_A 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRK-----KVFRVRLGHYSLSPVYESGQQMFQGVKSIP 75 (227)
T ss_dssp CBTCEECCTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCC-----SSCEEEESCCBSSCCCCTTCEEEEEEEEEE
T ss_pred CCCCEECCCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCC-----CCcEEEEeeeecccCCCCCcEEEEEEEEEe
Confidence 678999999999999999754 67899999999999999999986 246788999887655455567788999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCC-CcchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG-QIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~c 351 (713)
||+|+.. ...+|||||+|.+|+.+++.++|||||.. ....+..+.++|||.+...+ ..+..|+++.+++++...|
T Consensus 76 Hp~y~~~---~~~~DIALl~L~~~~~~~~~v~pi~l~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C 151 (227)
T 2psx_A 76 HPGYSHP---GHSNDLMLIKLNRRIRPTKDVRPINVSSH-CPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRC 151 (227)
T ss_dssp CTTCCSS---SCTTCCEEEEESSCCCCCSSSCCCCBCSS-CCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHH
T ss_pred CCCCCCC---CCCCCEEEEEeCCCCCCCCceeeeECCCC-CCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHh
Confidence 9999863 56799999999999999999999999953 34567789999999988655 6688999999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.... ...++..|+|||. ..+.++|++
T Consensus 152 ~~~~--~~~~~~~~~Ca~~-~~~~~~C~G 177 (227)
T 2psx_A 152 EDAY--PRQIDDTMFCAGD-KAGRDSCQG 177 (227)
T ss_dssp HHHS--TTTCCTTEEEECC-STTCBCCTT
T ss_pred hhhc--CCCCCCCEEcccC-CCCCccCCC
Confidence 8643 2357899999996 567889986
No 62
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}
Probab=99.91 E-value=1.9e-24 Score=237.31 Aligned_cols=188 Identities=33% Similarity=0.604 Sum_probs=154.6
Q ss_pred CCCCCcccccccccccccCcCCchhhhhhcc--C--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccc
Q psy6523 184 GCGVPNRMDRIVGGWTTEVNEYPWVVALEQA--G--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYE 259 (713)
Q Consensus 184 ~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~--~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d 259 (713)
.|| .....||+||.++..++|||+++|... + .++||||||+++||||||||+.... ...+.|++|+++.....+
T Consensus 110 ~CG-~~~~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~~~-~~~~~V~lG~~~~~~~~~ 187 (408)
T 2xxl_A 110 DCG-NFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQ-NDLYEIRLGEHRISTEED 187 (408)
T ss_dssp CCS-CCCCCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTTCT-TTEEEEEESCSBTTCSCC
T ss_pred ccC-CCCCCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCCCC-CceEEEEeeeeECCCccc
Confidence 577 444579999999999999999998742 2 5899999999999999999997643 346789999988665433
Q ss_pred -----------cceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC----ccCCCceEEEe
Q psy6523 260 -----------TQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVG 324 (713)
Q Consensus 260 -----------~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~----~~~~~~~~v~G 324 (713)
.....+.|.+++.||+|+.. .+.+|||||+|.+|+.++++++|||||...+ ...+..+.++|
T Consensus 188 ~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~---~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~G 264 (408)
T 2xxl_A 188 CRQQGRKKKCAPPVVNVGIEKHLIHEKYDAR---HIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTG 264 (408)
T ss_dssp EEEETTEEEECCCCEEEEEEEEEECTTCBTT---TTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEE
T ss_pred hhhcccccccCCceEEEeEEEEEeCCCCCcc---ccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEE
Confidence 23467889999999999864 6789999999999999999999999997654 45678899999
Q ss_pred eccccCCCCcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 325 WGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 325 wG~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
||.+.... .+..|+++.+++++...|.+.... .++.+|+|||... +.|+|++
T Consensus 265 WG~t~~~~-~s~~L~~~~v~iv~~~~C~~~~~~--~~~~~~iCAg~~~-g~d~C~G 316 (408)
T 2xxl_A 265 WGTTENGS-SSDVLLQANVPLQPRSACSQAYRR--AVPLSQLCVGGGD-LQDSCKG 316 (408)
T ss_dssp CCCBTTBC-SCSBCEEEEEEEECHHHHHHHHTS--CCCTTEEEECCSC-SSSGGGS
T ss_pred eCcCCCCC-CCchheEeeeeecCHHHHHHHhcc--cCCCceEeecCCC-CCccCCC
Confidence 99987654 678999999999999999864332 2456999999865 7899987
No 63
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A
Probab=99.91 E-value=7.6e-24 Score=217.42 Aligned_cols=178 Identities=35% Similarity=0.701 Sum_probs=150.1
Q ss_pred ccccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 192 DRIVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 192 ~rI~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
.||+||..+.+.+|||+++|.. .+.++||||||+++||||||||+........+.|++|.++.... +.......|.++
T Consensus 16 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~-~~~~~~~~v~~~ 94 (247)
T 1ddj_A 16 GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNL-EPHVQEIEVSRL 94 (247)
T ss_dssp TTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSC-CTTCEEEEEEEE
T ss_pred CCcCCCEECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCcc-CCceEEEEeeeE
Confidence 5999999999999999999975 45789999999999999999999876555678899998876543 344567788999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||. .+|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+... ..+..|+++.+++++..
T Consensus 95 ~~hp~---------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~i~~~~ 164 (247)
T 1ddj_A 95 FLEPT---------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT-FGAGLLKEAQLPVIENK 164 (247)
T ss_dssp EECTT---------SCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSS-TTTTBCEEEEEEEECHH
T ss_pred EcCCC---------CCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCC-CCCccceEEeeeecCHH
Confidence 99974 4799999999999999999999999876543 5677899999988643 34678999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.++..+...++..|+|||...++.++|++
T Consensus 165 ~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 195 (247)
T 1ddj_A 165 VCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195 (247)
T ss_dssp HHTSTTTTTTCCCTTEEEESCSSSCCCBCCS
T ss_pred HhcchhccCCCCcCCeEeecCCCCCCccccC
Confidence 9987644455688999999998888999997
No 64
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Probab=99.91 E-value=2.6e-24 Score=217.90 Aligned_cols=175 Identities=34% Similarity=0.550 Sum_probs=149.0
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+.. ...+.|++|..+.... +.......|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~h 76 (226)
T 1azz_A 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG---AGFVDVVLGAHNIRED-EATQVTIQSTDFTVH 76 (226)
T ss_dssp CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTT---CSCEEEEESCSBSSSC-CTTCEEEEECCEEEC
T ss_pred CCCCEECCCCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCC---CCceEEEEcceEcCCC-CCccEEEEEEEEEEC
Confidence 678999999999999999876789999999999999999999975 3457788998876543 233456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+. ....+||||++|.+|+.+++.++|||||.... ..+..+.++|||.+... ...+..|+++.+++++...|+
T Consensus 77 p~y~~---~~~~~DiALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~ 152 (226)
T 1azz_A 77 ENYNS---FVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCD 152 (226)
T ss_dssp TTCBT---TTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-CTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHH
T ss_pred CCCCC---CCCCCceEEEEECCccccCCCcccccCCCCCC-CCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhh
Confidence 99986 35689999999999999999999999998764 66788999999998764 367889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...+ .++..|+||+. ..+.+.|++
T Consensus 153 ~~~~---~~~~~~~Ca~~-~~~~~~C~G 176 (226)
T 1azz_A 153 AVYG---IVTDGNICIDS-TGGKGTCNG 176 (226)
T ss_dssp HHHS---CCCTTEEEECC-TTTCBCCTT
T ss_pred hhhC---cCCCceEeecC-CCCCccCCC
Confidence 7543 57899999997 567889986
No 65
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Probab=99.91 E-value=6.2e-24 Score=218.05 Aligned_cols=183 Identities=30% Similarity=0.605 Sum_probs=154.0
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+.+|||++++... .++||||||+++||||||||+........+.|++|..+..... .......|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~-~~~~~~~v~~i~~h 78 (248)
T 2r0l_A 1 IIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTT-DVTQTFGIEKYIPY 78 (248)
T ss_dssp CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCC-SSCEEECEEEEEEC
T ss_pred CCCCccCCCCCCCeEEEEEcC-CceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeEEcCCCC-CccEEEeeeEEEeC
Confidence 678899999999999999753 7899999999999999999998765456788999998765432 23466789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCC----CCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCC-cchhcccccccccC
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQ-IASDLRATQVPVMS 347 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~-~~~~L~~~~~~~~~ 347 (713)
|.|+.. ...++|||||+|.+| +.+++.++|||||.....+ .+..+.++|||.+...+. .+..|+++.+++++
T Consensus 79 p~y~~~--~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~ 156 (248)
T 2r0l_A 79 TLYSVF--NPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVA 156 (248)
T ss_dssp TTCCTT--STTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCC
T ss_pred CccCcC--CCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeC
Confidence 999862 356799999999999 8899999999999865544 577899999999886544 57899999999999
Q ss_pred hhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 348 NQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 348 ~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...|.....+...++.+|+|||...++.+.|++
T Consensus 157 ~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 189 (248)
T 2r0l_A 157 DHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189 (248)
T ss_dssp HHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTT
T ss_pred HHHhCCccccCCcCCCCEEeECCCCCCCcCCCC
Confidence 999987655555688999999998888899987
No 66
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2
Probab=99.90 E-value=3.6e-24 Score=216.63 Aligned_cols=177 Identities=32% Similarity=0.608 Sum_probs=147.2
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+.+|||++++...+.++||||||+++||||||||+. ....|++|.++.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 74 (225)
T 1npm_A 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK-----QKYSVRLGDHSLQSR-DQPEQEIQVAQSIQH 74 (225)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC-----SSCEEEESCSBTTC---CCCEEECEEEEEEC
T ss_pred CCCCEECCCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCC-----CCceEEEeeeEcCCC-CCCcEEEEEEEEEEC
Confidence 67889999999999999987778999999999999999999984 456788998876543 223456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecccc-CCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE-ESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~-~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+........+||||++|.+|+.++..++|||||... ...+..+.++|||.+. ..+..+..|+++.+++++...|.
T Consensus 75 p~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~ 153 (225)
T 1npm_A 75 PCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC-PKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE 153 (225)
T ss_dssp TTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHH
T ss_pred CCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCC-CCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhh
Confidence 999543335678999999999999999999999999754 3467889999999885 45677889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+.. ...++.+|+||+... +.+.|++
T Consensus 154 ~~~--~~~~~~~~~Ca~~~~-~~~~C~G 178 (225)
T 1npm_A 154 RAY--PGKITEGMVCAGSSN-GADTCQG 178 (225)
T ss_dssp HHS--TTTCCTTEEEEECTT-CCBCCTT
T ss_pred HHh--CCCCCCCEEeecCCC-CCeecCC
Confidence 643 235789999999876 7889986
No 67
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=99.90 E-value=5.2e-24 Score=215.23 Aligned_cols=174 Identities=35% Similarity=0.692 Sum_probs=147.1
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||++++. .+.++||||||+++||||||||+. ..+.|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~-~~~~~CgGsLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 73 (223)
T 3mfj_A 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK-----SGIQVRLGEDNINVV-EGNEQFISASKSIVH 73 (223)
T ss_dssp CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCC-----SSCEEEESCSSTTSC-CSCCEEEEEEEEEEC
T ss_pred CCCCEECCCCcCCEEEEEE-cCCeEEEEEEecCCEEEEhHHhcC-----CCcEEEECCceeccc-CCCcEEEEeeEEEEC
Confidence 6788899999999999994 567999999999999999999983 456788998876533 233456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccC-CCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE-SGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. ...+|||||+|.+|+.+++.++|||||.... ..+..+.++|||.+.. ....+..|+++.+++++...|.
T Consensus 74 p~y~~~---~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~ 149 (223)
T 3mfj_A 74 PSYNSN---TLNNDIMLIKLKSAASLNSRVASISLPTSCA-SAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK 149 (223)
T ss_dssp TTCCTT---TCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHH
T ss_pred CCCCCC---CCCCCEEEEEeCCCcccCCcEeeeECCCCCC-CCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhh
Confidence 999863 5689999999999999999999999997654 5678899999999864 4566889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
... ...++.+|+||+....+.+.|++
T Consensus 150 ~~~--~~~~~~~~~Ca~~~~~~~~~C~G 175 (223)
T 3mfj_A 150 SAY--PGQITSNMFCAGYLEGGKDSCQG 175 (223)
T ss_dssp HHS--TTTCCTTEEEESCTTSSCBCCTT
T ss_pred hhh--cCcCCCCEEEccCCCCCCCcCCC
Confidence 643 23578999999998888999986
No 68
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=99.90 E-value=3.7e-24 Score=218.25 Aligned_cols=181 Identities=28% Similarity=0.616 Sum_probs=151.9
Q ss_pred ccccccccCcCCchhhhhhccC--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
|+||..+.+.+|||++++...+ .++||||||+++||||||||+... ....+.|++|..+.... +...+.+.|.+++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~-~~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~ 78 (238)
T 1ym0_A 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGE-APALVSLVVGEHDSSAA-STVRQTHDVDSIF 78 (238)
T ss_dssp CBSCEECCTTSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTC-CGGGEEEEESCSBTTSC-CSSCEEEEEEEEE
T ss_pred CCCCEECCCCccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCC-CCceEEEEEcccccCCC-CCCceEEEEEEEE
Confidence 6788889999999999998554 789999999999999999999765 23467889998876543 2334677899999
Q ss_pred eCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCc-chhcccccccccChhh
Q psy6523 272 THPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQI-ASDLRATQVPVMSNQE 350 (713)
Q Consensus 272 ~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~ 350 (713)
.||+|+.. ...+|||||+|.+|+.++..++|||||.....+.+..+.++|||.+...+.. +..|+++.+++++...
T Consensus 79 ~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~ 155 (238)
T 1ym0_A 79 VNENYDPA---TLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAF 155 (238)
T ss_dssp ECTTCCTT---TCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHH
T ss_pred ECCCCCCC---CCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHH
Confidence 99999863 5689999999999999999999999998776667888999999998876665 7899999999999999
Q ss_pred hhcCCCccccccCcccccCCCCCC--CCCccc
Q psy6523 351 CRQFPGFEAKLTGNMMCAGYVEGG--KDSCQV 380 (713)
Q Consensus 351 c~~~~~~~~~it~~~~cAG~~~~~--~d~c~~ 380 (713)
|...... ..++..|+||+...++ .+.|++
T Consensus 156 C~~~~~~-~~~~~~~~Ca~~~~~~~~~~~C~G 186 (238)
T 1ym0_A 156 CDAVYTS-DTIYDDMICATDNTGMTDRDSCQG 186 (238)
T ss_dssp HHHHCTT-SCCCTTEEEEECSSCSSSCBCCTT
T ss_pred HhHhhcc-cccCCCeEEecCCCCCCcCccCCC
Confidence 9864321 2578999999988666 889986
No 69
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Probab=99.90 E-value=3.1e-24 Score=218.86 Aligned_cols=178 Identities=31% Similarity=0.588 Sum_probs=149.0
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++..++|||++++...+.++||||||+++||||||||+. ....|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~~~~H 74 (237)
T 1ao5_A 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV-----DQYEVWLGKNKLFQE-EPSAQHRLVSKSFPH 74 (237)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCC-----SSCEEEESCCBSSSC-CSSCEECCEEEEEEC
T ss_pred CCCCeECCCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCC-----CCCEEEecccccccC-CCCcEEEEEEEEEcC
Confidence 67899999999999999987778999999999999999999995 356788998876532 233456789999999
Q ss_pred CCCCcCCC--------CCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhccccccc
Q psy6523 274 PKYNAQGA--------KSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQVP 344 (713)
Q Consensus 274 ~~~~~~~~--------~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~~~ 344 (713)
|+|+.... ..+.+|||||+|.+|+.+++.++|||||... ...+..+.++|||.+... ...++.|+++.++
T Consensus 75 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~ 153 (237)
T 1ao5_A 75 PGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE-PKPGSKCLASGWGSITPTRWQKPDDLQCVFIT 153 (237)
T ss_dssp TTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSC-CCTTCEEEEEESCCSSCC-CCCCSBCEEEEEE
T ss_pred CCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCC-CCCCCEEEEEECCccCCCCCCCCCcccEEEEE
Confidence 99986432 2347999999999999999999999999764 356788999999998865 5678899999999
Q ss_pred ccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 345 VMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 345 ~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++...|.+.. ...++..|+|||....+.+.|++
T Consensus 154 ~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 187 (237)
T 1ao5_A 154 LLPNENCAKVY--LQKVTDVMLCAGEMGGGKDTCRD 187 (237)
T ss_dssp EECHHHHHHHC--SSCCCTTEEEEECTTCSCBCCTT
T ss_pred ecChhHhhhhh--cccCCCCEEEEccCCCCCCCCCC
Confidence 99999998643 24578999999966778899986
No 70
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*
Probab=99.90 E-value=2.8e-24 Score=217.31 Aligned_cols=176 Identities=34% Similarity=0.621 Sum_probs=149.3
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+.+|||++++...+.++||||||+++||||||||+.... ...+.|.+|..++.. ......|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-~~~~~v~~G~~~~~~----~~~~~~v~~i~~h 75 (224)
T 1pq7_A 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYA-QSGFQIRAGSLSRTS----GGITSSLSSVRVH 75 (224)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSC-GGGEEEEESCSBSSS----SSEEECEEEEEEC
T ss_pred CCCCEECCCCCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCCCC-CCceEEEeCcceecC----CCEEEEEEEEEEC
Confidence 67889999999999999987778999999999999999999997643 346788899887632 3456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCC-CCccCCCceEEEeeccccCCC-CcchhcccccccccChhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL-GEKFTQRTGTVVGWGRVEESG-QIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~-~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~c 351 (713)
|+|+.. ++||||++|.+|+.++..++|+|||.. .....+..+.++|||.+...+ ..+..|+++.+++++...|
T Consensus 76 p~y~~~-----~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C 150 (224)
T 1pq7_A 76 PSYSGN-----NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATC 150 (224)
T ss_dssp TTCBTT-----BTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHH
T ss_pred CCCCCC-----CCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHh
Confidence 999864 799999999999999999999999953 333567889999999988766 6678899999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+..... ..++..|+|||....+.+.|++
T Consensus 151 ~~~~~~-~~~~~~~~Ca~~~~~~~~~C~G 178 (224)
T 1pq7_A 151 RAQYGT-SAITNQMFCAGVSSGGKDSCQG 178 (224)
T ss_dssp HHHHCT-TTSCTTEEEECCTTCCCBCCTT
T ss_pred hHhhcC-CCCCCCeEEeecCCCCCCCCcC
Confidence 865432 3578999999998888999986
No 71
>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*
Probab=99.90 E-value=3.9e-24 Score=218.09 Aligned_cols=178 Identities=33% Similarity=0.612 Sum_probs=148.1
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+... ..|++|.++..... ...+.+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~-----~~v~~G~~~~~~~~-~~~~~~~v~~~~~H 74 (237)
T 2zch_P 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNK-----SVILLGRHSLFHPE-DTGQVFQVSHSFPH 74 (237)
T ss_dssp CBSCEECCTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCSS-----CEEEESCSBSSSCC-TTCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCCC-----ceEEEecccccCCC-CCcEEEEEEEEecC
Confidence 6789999999999999998778899999999999999999998642 36888887755432 23467789999999
Q ss_pred CCCCcCCC--------CCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCc-chhccccccc
Q psy6523 274 PKYNAQGA--------KSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQI-ASDLRATQVP 344 (713)
Q Consensus 274 ~~~~~~~~--------~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~-~~~L~~~~~~ 344 (713)
|+|+.... ....+||||++|.+|+.+++.++|+|||... ...+..+.++|||.+...+.. +..|+++.++
T Consensus 75 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~ 153 (237)
T 2zch_P 75 PLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQE-PALGTTCYASGWGSIEPEEFLTPKKLQCVDLH 153 (237)
T ss_dssp TTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSC-CCTTCEEEEEESCCSSSSSCCCCSBCEEEEEE
T ss_pred CCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCC-CCCCCEEEEEeCCccCCCCCcCCcccEEeEEE
Confidence 99986432 1237899999999999999999999999853 446788999999998765543 7889999999
Q ss_pred ccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 345 VMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 345 ~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++...|.+.. ...++..|+|||...++.++|++
T Consensus 154 ~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 187 (237)
T 2zch_P 154 VISNDVCAQVH--PQKVTKFMLCAGRWTGGKSTCSG 187 (237)
T ss_dssp EECHHHHHHHC--SSBCCTTEEEEECTTCSCBCCTT
T ss_pred EeCHHHhcccc--cCCCCceEEeecCCCCCCcccCC
Confidence 99999998643 23578999999998888999986
No 72
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Probab=99.90 E-value=5.7e-24 Score=218.82 Aligned_cols=183 Identities=28% Similarity=0.542 Sum_probs=151.0
Q ss_pred ccccccccCcCCchhhhhhc------cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ------AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRV 267 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e------~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v 267 (713)
|+||..+.+++|||+++|.. ...++||||||+++||||||||+........+.|++|.+++... +.....+.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~-~~~~~~~~v 79 (252)
T 1rtf_B 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVP-GEEEQKFEV 79 (252)
T ss_dssp CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSC-CTTCEEEEE
T ss_pred CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCC-CCcceEEEE
Confidence 67889999999999999973 34589999999999999999999765545678899998876543 233467789
Q ss_pred eEEeeCCCCCcCCCCCCccceEEEecCCC----CCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCC-Ccchhcccc
Q psy6523 268 VKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESG-QIASDLRAT 341 (713)
Q Consensus 268 ~~ii~h~~~~~~~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~-~~~~~L~~~ 341 (713)
.+++.||+|+.. .+.+|||||+|.+| +.+++.++|||||.....+ .+..+.+.|||.+...+ ..+..|+++
T Consensus 80 ~~i~~Hp~y~~~---~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~ 156 (252)
T 1rtf_B 80 EKYIVHKEFDDD---TYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEA 156 (252)
T ss_dssp EEEEECTTCCTT---TCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEE
T ss_pred EEEEeCCCCCcC---CCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEe
Confidence 999999999864 56799999999999 8999999999999876544 46779999999987654 457889999
Q ss_pred cccccChhhhhcCCCccccccCcccccCCCCCC------CCCccc
Q psy6523 342 QVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGG------KDSCQV 380 (713)
Q Consensus 342 ~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~------~d~c~~ 380 (713)
.+++++...|.....+...++.+|+|||...++ .+.|++
T Consensus 157 ~~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~G 201 (252)
T 1rtf_B 157 HVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQG 201 (252)
T ss_dssp EEEECCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTT
T ss_pred eeEEecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccC
Confidence 999999999987655555688999999987765 789986
No 73
>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Probab=99.90 E-value=1.2e-24 Score=232.86 Aligned_cols=191 Identities=32% Similarity=0.591 Sum_probs=150.9
Q ss_pred CCCCCc----ccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCC----CCCceEEEEccccCC
Q psy6523 184 GCGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK----RQKDLIVVISEHNRA 255 (713)
Q Consensus 184 ~~~~~~----~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~----~~~~~vv~ig~~~~~ 255 (713)
.||.+. ...||+||..+.+++|||++++.. ...||||||+++||||||||+.... ....+.|++|.++..
T Consensus 76 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~ 153 (329)
T 1md8_A 76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE 153 (329)
T ss_dssp CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEES--SSEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCSBHH
T ss_pred CCCCCCCcccccccccCCEECCCCCCCCeEeecc--CCCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEecccccc
Confidence 477743 357999999999999999998864 3579999999999999999997432 233467889987743
Q ss_pred cccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCc
Q psy6523 256 TVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQI 334 (713)
Q Consensus 256 ~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~ 334 (713)
... ....+.|.+++.||+|+......+++|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+... .
T Consensus 154 ~~~--~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~--~ 229 (329)
T 1md8_A 154 ELM--KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--I 229 (329)
T ss_dssp HHH--HHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSS--B
T ss_pred ccc--cccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCC--C
Confidence 221 1234678999999999976445678999999999999999999999999765443 4677999999988754 6
Q ss_pred chhcccccccccChhhhhcCCC---ccccccCcccccCCCCCCCCCccc
Q psy6523 335 ASDLRATQVPVMSNQECRQFPG---FEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 335 ~~~L~~~~~~~~~~~~c~~~~~---~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+..|+++.+++++...|.+... ....++.+|+|||...++.++|++
T Consensus 230 ~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~G 278 (329)
T 1md8_A 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG 278 (329)
T ss_dssp CSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTT
T ss_pred CccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCC
Confidence 7899999999999999986322 123478999999998888999987
No 74
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B
Probab=99.90 E-value=8.2e-24 Score=217.13 Aligned_cols=181 Identities=29% Similarity=0.611 Sum_probs=153.1
Q ss_pred ccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCC-------------CCCCceEEEEccccCCcccc
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSS-------------KRQKDLIVVISEHNRATVYE 259 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~-------------~~~~~~vv~ig~~~~~~~~d 259 (713)
|+||.++.+++|||++++.. .+.++||||||+++||||||||+... .....+.|++|..++... +
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~-~ 79 (251)
T 3gov_B 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRS-D 79 (251)
T ss_dssp CBTCEECCTTSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSC-C
T ss_pred CCCCEECCCCCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCC-C
Confidence 67899999999999999975 56789999999999999999999764 334567899998876543 3
Q ss_pred cceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcc
Q psy6523 260 TQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLR 339 (713)
Q Consensus 260 ~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~ 339 (713)
.....+.|.+++.||+|+. ....+|||||+|.+|+.++..++|||||.... ..+..+.++|||.+... ..+..|+
T Consensus 80 ~~~~~~~v~~i~~hp~y~~---~~~~~DIAll~L~~~~~~~~~v~picLp~~~~-~~~~~~~v~GwG~~~~~-~~~~~L~ 154 (251)
T 3gov_B 80 ENEQHLGVKHTTLHPQYDP---NTFENDVALVELLESPVLNAFVMPICLPEGPQ-QEGAMVIVSGWGKQFLQ-RFPETLM 154 (251)
T ss_dssp SSCEEECEEEEEECTTCBT---TTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC-CTTCEEEEEECSCCTTS-CCCSBCE
T ss_pred CcceEeeeEEEEECCCCCC---CCCCCCEEEEEeCCcccCCCceEEeECCCCCC-CCCCEEEEEcCCCCCCC-CCCccce
Confidence 3456778999999999986 35679999999999999999999999997665 56788999999987653 4788999
Q ss_pred cccccccChhhhhcCC-CccccccCcccccCCCCCCCCCccc
Q psy6523 340 ATQVPVMSNQECRQFP-GFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 340 ~~~~~~~~~~~c~~~~-~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
++.+++++...|.... .+...++..|+|||...++.+.|++
T Consensus 155 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 196 (251)
T 3gov_B 155 EIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAG 196 (251)
T ss_dssp EEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTT
T ss_pred EEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCC
Confidence 9999999999998643 3345689999999999889999986
No 75
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1
Probab=99.90 E-value=2.6e-24 Score=230.73 Aligned_cols=186 Identities=34% Similarity=0.700 Sum_probs=143.9
Q ss_pred CCCCCc----ccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccc
Q psy6523 184 GCGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYE 259 (713)
Q Consensus 184 ~~~~~~----~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d 259 (713)
.||.+. ...||+||..+.+++|||+++|. ..+||||||+++||||||||+..... ..|++|.++....
T Consensus 69 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~---~~~CgGsLIs~~~VLTAAHC~~~~~~---~~v~~G~~~~~~~-- 140 (333)
T 1elv_A 69 VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGNRE---PTMYVGSTSVQTS-- 140 (333)
T ss_dssp CCSCCSSCC-----CBTCEECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTCSS---CCEECSCSBCC----
T ss_pred CcCCCCCcccccceeecCcccCCCCcCeEEEec---CCceeEEEecCCEEEehhheeCCCCC---CeEEEeeeecccC--
Confidence 588854 34799999999999999999994 23899999999999999999976432 3678888876321
Q ss_pred cceEEEEe---eEEeeCCCCCcC----CCCCCccceEEEecCCCCCCCCCcccccCCCCCCc---cCCCceEEEeecccc
Q psy6523 260 TQIETRRV---VKVLTHPKYNAQ----GAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK---FTQRTGTVVGWGRVE 329 (713)
Q Consensus 260 ~~~~~~~v---~~ii~h~~~~~~----~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~---~~~~~~~v~GwG~~~ 329 (713)
....+.| .+++.||+|+.. +...+++|||||+|.+|+.+++.++|||||..... ..+..+.++|||.+.
T Consensus 141 -~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~ 219 (333)
T 1elv_A 141 -RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTE 219 (333)
T ss_dssp ------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCS
T ss_pred -ccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCcC
Confidence 2233445 999999999852 23457899999999999999999999999976543 357789999999987
Q ss_pred CCCCcchhcccccccccChhhhhcCCCcc-------ccccCcccccCCCCCCCCCccc
Q psy6523 330 ESGQIASDLRATQVPVMSNQECRQFPGFE-------AKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 330 ~~~~~~~~L~~~~~~~~~~~~c~~~~~~~-------~~it~~~~cAG~~~~~~d~c~~ 380 (713)
. +..+..|+++.+++++...|.+..... ..++.+|+|||... +.++|++
T Consensus 220 ~-~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~G 275 (333)
T 1elv_A 220 K-RDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKG 275 (333)
T ss_dssp S-CSSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTT
T ss_pred C-CCcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcC
Confidence 6 356789999999999999998754321 25789999999876 8899997
No 76
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2
Probab=99.90 E-value=2.1e-24 Score=220.50 Aligned_cols=180 Identities=30% Similarity=0.535 Sum_probs=125.4
Q ss_pred ccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 192 DRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 192 ~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
.||++|..+..++|||++++...+.++||||||+++||||||||+. ....|++|..+.... +.....+.|.+++
T Consensus 2 arIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~~~ 75 (240)
T 1sgf_A 2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLED-EPSDQHRLVSKAI 75 (240)
T ss_dssp -----------CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCC-----SCCEEEECC----C--CTTCEEEEEEEEE
T ss_pred CcccCCeECCCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCC-----CCceEEeCCcccccC-CCCceEEEEEEEE
Confidence 5899999999999999999954467999999999999999999986 356788898876432 2335668899999
Q ss_pred eCCCCCcCC--------CCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhccccc
Q psy6523 272 THPKYNAQG--------AKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQ 342 (713)
Q Consensus 272 ~h~~~~~~~--------~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~ 342 (713)
.||+|+... ...+.+|||||+|.+|+.+++.++|||||... ...+..+.++|||.+... ...+..|+++.
T Consensus 76 ~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~ 154 (240)
T 1sgf_A 76 PHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE-PKLGSTCLASGWGSTTPIKFKYPDDLQCVN 154 (240)
T ss_dssp ECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSC-CCTTCEEEEC-------C---------CEE
T ss_pred cCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCC-CCCCCEEEEEecCCCCCCCCCCCccccEEe
Confidence 999998641 12567999999999999999999999999764 356788999999998754 56788999999
Q ss_pred ccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 343 VPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 343 ~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++++...|.... ...++..|+|||...++.+.|++
T Consensus 155 ~~~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 190 (240)
T 1sgf_A 155 LKLLPNEDCDKAH--EMKVTDAMLCAGEMDGGSYTCEH 190 (240)
T ss_dssp EEEECTHHHHTTC--SSBCCTTEEEEEECSSSEEECCC
T ss_pred eeEeCHHHhhhhh--CCCcCCCeEeEccCCCCCCCCCC
Confidence 9999999998753 34578999999998888889986
No 77
>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*
Probab=99.90 E-value=8.3e-24 Score=213.86 Aligned_cols=175 Identities=30% Similarity=0.511 Sum_probs=146.1
Q ss_pred ccccccccCcCCchhhhhhcc--C-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--G-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||..+.+++|||++++... + .++||||||+++||||||||+.. ...|++|..+.... +.....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~-----~~~v~~G~~~~~~~-~~~~~~~~v~~i 74 (224)
T 1cgh_A 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS-----NINVTLGAHNIQRR-ENTQQHITARRA 74 (224)
T ss_dssp CBSCEECCTTSSTTEEEEEESTTTTSCEEEEEEEETTEEEECGGGCCS-----SEEEEESCSBTTSC-CTTCEEEEEEEE
T ss_pred CCCCEECCCCCCCcEEEEEEECCCCCeEEEEEEeeCCEEEEhHHhCCC-----CCEEEEeecccCCC-CCccEEEEEEEE
Confidence 678889999999999998742 3 48999999999999999999864 57888998876542 334567889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. ...+||||++|.+|+.+++.++|||||..... ..+..+.++|||.+. .+..++.|+++.+++++..
T Consensus 75 ~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~i~~~~ 150 (224)
T 1cgh_A 75 IRHPQYNQR---TIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDR 150 (224)
T ss_dssp EECTTCBTT---TTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHH
T ss_pred EcCCCCCCC---CCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCC-CCCCCCcceEEEEEeeCHH
Confidence 999999863 56899999999999999999999999987654 467789999999987 5566889999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+|....+ ......|+||+...++.+.|++
T Consensus 151 ~C~~~~~--~~~~~~~~Ca~~~~~~~~~C~G 179 (224)
T 1cgh_A 151 QCLRIFG--SYDPRRQICVGDRRERKAAFKG 179 (224)
T ss_dssp HHHHHCT--TCCTTTEEEECCTTSCCBCCTT
T ss_pred HHHHHhC--cCCCcceEeeccCCCCCeEeeC
Confidence 9986432 2234569999998888899986
No 78
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...
Probab=99.90 E-value=4e-24 Score=218.59 Aligned_cols=178 Identities=37% Similarity=0.686 Sum_probs=149.9
Q ss_pred ccccccccCcCCchhhhhh-ccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALE-QAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~-e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||..+.+++|||++++. ..+.++||||||+++||||||||+... ..+.|++|..+.... +.....+.|.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~---~~~~V~~G~~~~~~~-~~~~~~~~v~~i~~ 76 (241)
T 2jkh_A 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA---KRFKVRVGDRNTEQE-EGGEAVHEVEVVIK 76 (241)
T ss_dssp CBSSEECCTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSC---SSCEEEESCSBTTCC-CSCCEEECEEEEEE
T ss_pred CCCCEECCCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCC---CcEEEEECCccCCCC-CCCcEEEEeEEEEe
Confidence 6788999999999999987 456789999999999999999999754 257888998875543 23345678999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC----ccCCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
||+|+.. .+.+|||||+|.+|+.++..++|||||.... ...+..+.++|||.+...+..+..|+++.+++++.
T Consensus 77 Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 153 (241)
T 2jkh_A 77 HNRFTKE---TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDR 153 (241)
T ss_dssp CTTCBTT---TTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECH
T ss_pred CCCCCCC---CCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccH
Confidence 9999863 5689999999999999999999999997542 23567899999999988778888999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|..... ..++.+|+|||....+.+.|++
T Consensus 154 ~~C~~~~~--~~~~~~~~Ca~~~~~~~~~C~G 183 (241)
T 2jkh_A 154 NSCKLSSS--FIITQNMFCAGYDTKQEDACQG 183 (241)
T ss_dssp HHHHHHCS--SCCCTTEEEESCSSSSCBCCTT
T ss_pred HHhccccc--CcCCCCeEEeeCCCCCCccCcC
Confidence 99986432 3578999999998888899987
No 79
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=216.19 Aligned_cols=178 Identities=34% Similarity=0.637 Sum_probs=149.5
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+.. ...|++|.++.... +...+.+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~-----~~~v~~G~~~~~~~-~~~~~~~~v~~~~~h 74 (238)
T 1spj_A 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISD-----NYQLWLGRHNLFDD-ENTAQFVHVSESFPH 74 (238)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS-----SEEEEESCSBTTSC-CTTCEEECEEEEEEC
T ss_pred CCCCEECCCCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCCC-----CceEEEEeccccCC-CCCceEEEEEEEEcC
Confidence 678999999999999999877789999999999999999999863 46788998876543 233456789999999
Q ss_pred CCCCcCC--------CCCCccceEEEecCCCCC-CCCCcccccCCCCCCccCCCceEEEeeccccCCC-Ccchhcccccc
Q psy6523 274 PKYNAQG--------AKSHDHDIALLKLDTPLE-FKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG-QIASDLRATQV 343 (713)
Q Consensus 274 ~~~~~~~--------~~~~~~diall~L~~p~~-~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~ 343 (713)
|+|+... ...+.+||||++|.+|+. +++.++|+|||.... ..+..+.++|||.+...+ ..+..|+++.+
T Consensus 75 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~ 153 (238)
T 1spj_A 75 PGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEP-EVGSTCLASGWGSIEPENFSFPDDLQCVDL 153 (238)
T ss_dssp TTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSBCEEEEE
T ss_pred CCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCC-CCCCEEEEEecCCCCCCCCCCcCcccEEEE
Confidence 9998421 245689999999999998 999999999997543 457889999999988654 67889999999
Q ss_pred cccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 344 PVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 344 ~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
++++..+|.... ...++..|+|||....+.++|++
T Consensus 154 ~~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 188 (238)
T 1spj_A 154 KILPNDECKKAH--VQKVTDFMLCVGHLEGGKDTCVG 188 (238)
T ss_dssp EEECHHHHHHHC--SSCCCTTEEEEECTTCSSBCCTT
T ss_pred eecCHHHhhhhc--cCCCCCCeEEeeCCCCCCCCCCC
Confidence 999999998643 23578999999998888999987
No 80
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2
Probab=99.90 E-value=5.9e-24 Score=216.75 Aligned_cols=178 Identities=28% Similarity=0.518 Sum_probs=150.1
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+.+|||++++...+.++||||||+++||||||||+. ..+.|++|..+..... .....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~~-~~~~~~~v~~~~~h 74 (237)
T 1gvz_A 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSKDE-DTAQFHQVSDSFLD 74 (237)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC-----SSCEEEESCSBTTSCC-TTCEEECEEEEEEC
T ss_pred CCCCEECCCCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCC-----CCCeEEEeecccccCC-CCceEEEeeeEecC
Confidence 67889999999999999987778999999999999999999985 4678899998765432 23466889999999
Q ss_pred CCCCcCCC--------CCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecccc-CCCCcchhccccccc
Q psy6523 274 PKYNAQGA--------KSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE-ESGQIASDLRATQVP 344 (713)
Q Consensus 274 ~~~~~~~~--------~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~-~~~~~~~~L~~~~~~ 344 (713)
|+|+.... ....+||||++|.+|+.+++.++|||||... ...+..+.++|||.+. ..+..+..|+++.++
T Consensus 75 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~ 153 (237)
T 1gvz_A 75 PQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-PKLGSTCYTSGWGLISTFTNRGSGTLQCVELR 153 (237)
T ss_dssp TTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC-CCTTCEEEEEEEECSCTTTCSEEEEEEEEEEE
T ss_pred CccCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCC-CCCCCEEEEECCCcccCCCCCCCCccEEEEEe
Confidence 99986432 2237999999999999999999999999765 3467889999999884 456778899999999
Q ss_pred ccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 345 VMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 345 ~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++...|.+.. ...++..|+||+....+.+.|++
T Consensus 154 ~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 187 (237)
T 1gvz_A 154 LQSNEKCARAY--PEKMTEFVLCATHRDDSGSICLG 187 (237)
T ss_dssp EECGGGGCSSC--GGGCCTTEEEEECSSTTCEECGG
T ss_pred EeChhHhhhhh--hhcCCCceEEEeeCCCCCccCCC
Confidence 99999998753 34678999999998888899986
No 81
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Probab=99.90 E-value=1.1e-23 Score=213.36 Aligned_cols=176 Identities=29% Similarity=0.460 Sum_probs=147.7
Q ss_pred ccccccccCcCCchhhhhhc--cC-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ--AG-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e--~~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||.++.+++|||++++.. .+ .++||||||+++||||||||+.. ...|++|.++.... +.....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~-----~~~v~~G~~~~~~~-~~~~~~~~v~~i 74 (227)
T 1iau_A 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS-----SINVTLGAHNIKEQ-EPTQQFIPVKRP 74 (227)
T ss_dssp CBTCEECCTTSSTTEEEEEEECSSCEEEEEEEEEETTEEEECGGGCCS-----EEEEEESCSBTTSC-CTTCEEEEEEEE
T ss_pred CCCCeECCCCCcCcEEEEEEECCCCceEEEEEEEcCCEEEECHHhCCC-----ceEEEEccccccCC-CCccEEEEEEEE
Confidence 67889999999999999964 33 48999999999999999999853 47889999876543 334567889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. .+.+||||++|.+|+.+++.++|||||..... ..+..+.++|||.+...+..+..|+++.+++++..
T Consensus 75 ~~Hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~ 151 (227)
T 1iau_A 75 IPHPAYNPK---NFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDR 151 (227)
T ss_dssp EECTTCCTT---TCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHH
T ss_pred ECCCCCCCC---CCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechH
Confidence 999999863 56899999999999999999999999987654 46778999999999877788899999999999999
Q ss_pred hhhcCCCccccc-cCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKL-TGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~i-t~~~~cAG~~~~~~d~c~~ 380 (713)
.|..... ..+ ...|+|||...++.+.|++
T Consensus 152 ~C~~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 181 (227)
T 1iau_A 152 KCESDLR--HYYDSTIELCVGDPEIKKTSFKG 181 (227)
T ss_dssp HHHHHTT--TTCCTTTEEEESCTTSCCBCCTT
T ss_pred HhhhHhc--cccCCCcEEEeECCCCCCeeeec
Confidence 9986322 123 3459999998888999986
No 82
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A
Probab=99.90 E-value=6.4e-24 Score=233.78 Aligned_cols=189 Identities=31% Similarity=0.584 Sum_probs=157.5
Q ss_pred CCCCCcc--cccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCC-CCceEEEEccccCCccccc
Q psy6523 184 GCGVPNR--MDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKR-QKDLIVVISEHNRATVYET 260 (713)
Q Consensus 184 ~~~~~~~--~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~-~~~~vv~ig~~~~~~~~d~ 260 (713)
.||.+.. ..||+||..+.+++|||+++|.. .++||||||+++||||||||+..... ...+.|++|++++. +.
T Consensus 150 ~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~~~~---~~ 224 (403)
T 1zjk_A 150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRL---SP 224 (403)
T ss_dssp CCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCSBTT---CS
T ss_pred CCCCCCCCCCccccCCcCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEccccccC---CC
Confidence 5887643 47999999999999999999976 57899999999999999999976432 34678999998643 34
Q ss_pred ceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc---cCCCceEEEeeccccCCCCcchh
Q psy6523 261 QIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK---FTQRTGTVVGWGRVEESGQIASD 337 (713)
Q Consensus 261 ~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~---~~~~~~~v~GwG~~~~~~~~~~~ 337 (713)
....+.|.+++.||+|+... .+++|||||+|.+|+.++++++|||||..... ..+..+.++|||.+... ..+..
T Consensus 225 ~~~~~~v~~i~~Hp~y~~~~--~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~ 301 (403)
T 1zjk_A 225 HYTQAWSEAVFIHEGYTHDA--GFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARN 301 (403)
T ss_dssp CCEEEEEEEEEECTTCCTTS--CCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS-CCCSB
T ss_pred CceEEeEEEEEECCCCCCCC--CCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC-ccCcc
Confidence 45678899999999998642 56899999999999999999999999976542 45778999999988764 57889
Q ss_pred cccccccccChhhhhcCCCcc----ccccCcccccCCCCCCCCCccc
Q psy6523 338 LRATQVPVMSNQECRQFPGFE----AKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 338 L~~~~~~~~~~~~c~~~~~~~----~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|+++.+++++..+|++..... ..++.+|+|||+..++.++|++
T Consensus 302 L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~G 348 (403)
T 1zjk_A 302 LMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG 348 (403)
T ss_dssp CEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSC
T ss_pred cEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcC
Confidence 999999999999998643321 2589999999999889999997
No 83
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Probab=99.90 E-value=7.1e-24 Score=214.38 Aligned_cols=173 Identities=32% Similarity=0.584 Sum_probs=145.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+..++|||++++.....++||||||+++||||||||+. ....|++|..+.. +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~G~~~~~---~~~~~~~~v~~~~~H 72 (224)
T 2qxi_A 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKM-----NEYTVHLGSDTLG---DRRAQRIKASKSFRH 72 (224)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC-----SCEEEEESCSBTT---CTTSEEEEECEEEEC
T ss_pred CCCCeECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEhHHcCC-----CCcEEEEeeeecC---CCccEEEEEEEEEEC
Confidence 67888999999999999954333499999999999999999983 4578889987754 234567889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccC-CCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE-SGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. ...+||||++|.+|+.+++.++|||||.... ..+..+.++|||.+.. ....+..|+++.+++++...|.
T Consensus 73 p~y~~~---~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~ 148 (224)
T 2qxi_A 73 PGYSTQ---THVNDLMLVKLNSQARLSSMVKKVRLPSRCE-PPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCT 148 (224)
T ss_dssp TTCCTT---TCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHH
T ss_pred CCCCCC---CCcCcEEEEEeCCCCcCCCceeeEECCCCCC-CCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhh
Confidence 999863 5679999999999999999999999997654 5678899999999864 4567889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+.. ...++..|+|||....+.+.|++
T Consensus 149 ~~~--~~~~~~~~~Ca~~~~~~~~~C~G 174 (224)
T 2qxi_A 149 KVY--KDLLENSMLCAGIPDSKKNACNG 174 (224)
T ss_dssp HHH--GGGCCTTEEEEECTTCCCBCCTT
T ss_pred HHh--cCcCCCCeEEecCCCCCCccCCC
Confidence 643 23578999999998888999986
No 84
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...
Probab=99.90 E-value=9.7e-24 Score=216.17 Aligned_cols=185 Identities=28% Similarity=0.495 Sum_probs=155.5
Q ss_pred ccccccccCcCCchhhhhhccC-----ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG-----KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVV 268 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~-----~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~ 268 (713)
|+||..+.+++|||++.|.... .++||||||+++||||||||+........+.|++|..+..... .......|.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~-~~~~~~~v~ 79 (247)
T 3mhw_U 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNT-QGEMKFEVE 79 (247)
T ss_dssp CBSSEECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCC-TTCEEEEEE
T ss_pred CCCCEECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccccccCCC-CCCEEEEEE
Confidence 6788899999999999986422 5789999999999999999998776667789999998766542 344567899
Q ss_pred EEeeCCCCCcCCCCCCccceEEEecCCC----CCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCC-cchhccccc
Q psy6523 269 KVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQ-IASDLRATQ 342 (713)
Q Consensus 269 ~ii~h~~~~~~~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~-~~~~L~~~~ 342 (713)
+++.||+|+... ...++|||||+|.+| +.++..++|+|||.....+ .+..|.++|||.+...+. .+..|+.+.
T Consensus 80 ~i~~hp~y~~~~-~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~ 158 (247)
T 3mhw_U 80 NLILHKDYSADT-LAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTV 158 (247)
T ss_dssp EEEECTTCEEC--CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEE
T ss_pred EEEECCCCCCCc-CCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeE
Confidence 999999998643 235789999999999 7899999999999875444 467899999999876554 688999999
Q ss_pred ccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 343 VPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 343 ~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++++...|.....+...++.+|+||+...++.+.|++
T Consensus 159 ~~~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 196 (247)
T 3mhw_U 159 VKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196 (247)
T ss_dssp EEEECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTT
T ss_pred EEEEChHHhcCccccCCcCCCCeEecCCCCCCCccCCC
Confidence 99999999998666667789999999999889999997
No 85
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2
Probab=99.90 E-value=1.7e-23 Score=212.03 Aligned_cols=176 Identities=30% Similarity=0.490 Sum_probs=146.3
Q ss_pred ccccccccCcCCchhhhhhcc--C-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--G-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||.++.+++|||++++... + .++||||||+++||||||||+.. ...|++|.++.... +.....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~-----~~~v~~G~~~~~~~-~~~~~~~~v~~i 74 (227)
T 1euf_A 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS-----SINVTLGAHNIMER-ERTQQVIPVRRP 74 (227)
T ss_dssp CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE-----EEEEEESCSBTTSC-CTTCEEEEEEEE
T ss_pred CCCCeECCCCCcCCEEEEEEeCCCCceEEEEEEeeCCEEEECHHHCCC-----CcEEEEcccccCCC-CCccEEEEEEEE
Confidence 678899999999999998642 3 68999999999999999999854 57788998876542 234567889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||+|+.. ...+||||++|.+|+.+++.++|||||..... ..+..+.++|||.+...+..+..|+++.+++++..
T Consensus 75 ~~Hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~ 151 (227)
T 1euf_A 75 IPHPDYNDE---TLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEE 151 (227)
T ss_dssp EECTTCCTT---TCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTH
T ss_pred EeCCCCCCC---CCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHH
Confidence 999999863 56899999999999999999999999976543 46788999999999877778889999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.... ...++.+|+|||....+...|++
T Consensus 152 ~C~~~~--~~~~~~~~~Ca~~~~~~~~~~~G 180 (227)
T 1euf_A 152 KCIARF--KNYIPFTQICAGDPSKRKNSFSG 180 (227)
T ss_dssp HHHTTC--TTCCTTTEEEESCTTSCCBCCTT
T ss_pred HhhHhh--cCcCCCcEEEccCCCCCCccccc
Confidence 998743 33578899999987664556643
No 86
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2
Probab=99.90 E-value=1.1e-23 Score=214.33 Aligned_cols=176 Identities=34% Similarity=0.609 Sum_probs=147.2
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++.. + ++||||||+++||||||||+. ....|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~-~-~~CgGsLIs~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~H 72 (235)
T 1ton_A 1 IVGGYKCEKNSQPWQVAVIN-E-YLCGGVLIDPSWVITAAHCYS-----NNYQVLLGRNNLFKD-EPFAQRRLVRQSFRH 72 (235)
T ss_dssp CBSCEECCTTSCTTEEEEES-S-SEEEEEEEETTEEEECGGGCC-----SCCEEEESCSBTTSC-CTTCEEECEEEEEEC
T ss_pred CCCCEECCCCCcCcEEEEcc-C-CeEEEEEecCCEEEEcHHhCC-----CCcEEEeCcccccCC-CCcceEEEEEEEEeC
Confidence 67889999999999999976 3 899999999999999999984 456788998876532 233466789999999
Q ss_pred CCCCcCC--------CCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhccccccc
Q psy6523 274 PKYNAQG--------AKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQVP 344 (713)
Q Consensus 274 ~~~~~~~--------~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~~~ 344 (713)
|+|+... .....+||||++|.+|+.++..++|||||... ...+..+.++|||.+... +..+..|+++.++
T Consensus 73 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~ 151 (235)
T 1ton_A 73 PDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE-PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIH 151 (235)
T ss_dssp TTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSC-CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEE
T ss_pred CCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCC-CCCCCEEEEEecCCCCCCCCccCccceEEEEE
Confidence 9998621 14567999999999999999999999999764 346788999999998754 5678899999999
Q ss_pred ccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 345 VMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 345 ~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++...|.... ...++..|+|||....+.++|++
T Consensus 152 ~~~~~~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 185 (235)
T 1ton_A 152 LLSNEKCIETY--KDNVTDVMLCAGEMEGGKDTCAG 185 (235)
T ss_dssp EECGGGCGGGG--STTGGGGEEEEECTTCSCBCCTT
T ss_pred EeCHHHHHHHh--cCcCCCCeEeeccCCCCCcCCCC
Confidence 99999998753 33578999999998888999986
No 87
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Probab=99.90 E-value=3.3e-24 Score=237.26 Aligned_cols=186 Identities=36% Similarity=0.667 Sum_probs=151.9
Q ss_pred cccccccccccCcCCchhhhhhcc--CceeeeeeeechhhHHhhcccccC-----CCCCCceEEEEccccCCcccccceE
Q psy6523 191 MDRIVGGWTTEVNEYPWVVALEQA--GKFFCGGTLISDRYVLTAAHCVRS-----SKRQKDLIVVISEHNRATVYETQIE 263 (713)
Q Consensus 191 ~~rI~~g~~~~~~~~P~~~~l~e~--~~~~cggslI~~r~vltaa~c~~~-----~~~~~~~vv~ig~~~~~~~~d~~~~ 263 (713)
..||+||..+.+++|||+++|... +.++||||||+++||||||||+.. ......+.|++|.+++.........
T Consensus 163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~ 242 (424)
T 3nxp_A 163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK 242 (424)
T ss_dssp SSCCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCE
T ss_pred CCeeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCcee
Confidence 359999999999999999999643 568999999999999999999953 2234568899999987665444556
Q ss_pred EEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC----ccCCCceEEEeeccccCC------CC
Q psy6523 264 TRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVGWGRVEES------GQ 333 (713)
Q Consensus 264 ~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~----~~~~~~~~v~GwG~~~~~------~~ 333 (713)
.+.|.+++.||+|+.. ..+++|||||+|.+|+.++.+++|||||.... ...+..|.++|||.+... ..
T Consensus 243 ~~~V~~ii~Hp~y~~~--~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~ 320 (424)
T 3nxp_A 243 ISMLEKIYIHPRYNWR--ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKG 320 (424)
T ss_dssp EECEEEEEECTTCBTT--TTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----
T ss_pred EEEEEEEEeCCCCCCC--CCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCC
Confidence 6789999999999842 35689999999999999999999999997653 235788999999987542 23
Q ss_pred cchhcccccccccChhhhhcCCCccccccCcccccCCCC---CCCCCccc
Q psy6523 334 IASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE---GGKDSCQV 380 (713)
Q Consensus 334 ~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~---~~~d~c~~ 380 (713)
.+..|+++.+++++...|.... ...++.+|+|||+.. .+.++|++
T Consensus 321 ~~~~L~~~~v~ii~~~~C~~~~--~~~i~~~~iCAg~~~~~~~~~d~C~G 368 (424)
T 3nxp_A 321 QPSVLQVVNLPIVERPVCKDST--RIRITDNMFCAGYKPDEGKRGDACEG 368 (424)
T ss_dssp CCSBCEEEEEEBCCHHHHHHTC--SSCCCTTEEEESCCCBTTBCCCTTCS
T ss_pred CCccceEEEeeEEcHHHhhhhc--cCcCCCCeEecccCCCCCCCCccCCC
Confidence 3788999999999999998764 346899999999864 35689997
No 88
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*
Probab=99.90 E-value=8.4e-24 Score=214.83 Aligned_cols=174 Identities=25% Similarity=0.515 Sum_probs=148.7
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++.. +.++||||||+++||||||||+.. ...|++|..+.....+.......+.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~~-----~~~v~~G~~~~~~~~~~~~~~~~v~~~~~h 74 (231)
T 2aiq_A 1 VIGGDECNINEHRFLALVYA-NGSLCGGTLINQEWVLTARHCDRG-----NMRIYLGMHNLKVLNKDALRRFPKEKYFCL 74 (231)
T ss_dssp CBSCEECCTTSCTTEEEEEE-TTEEEEEEECSSSEEEECGGGCCS-----SCEEEESCSCTTSCCTTCEEECEEEEECCS
T ss_pred CCCCeECCCCCCCeEEEEEc-CCCeEEEEEEeCCEEEEcHHcCCC-----CCEEEEecccccccCCCceEEEEEEEEEEC
Confidence 67889999999999999974 568999999999999999999864 567889988766544455667889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~~~~~~~~~c~ 352 (713)
|.|+. ..+++||||++|.+|+.++..++|||||.... ..+..+.++|||.+... ...+..|+++.+++++...|.
T Consensus 75 p~y~~---~~~~~DIALl~L~~~v~~~~~v~picL~~~~~-~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~ 150 (231)
T 2aiq_A 75 NTRND---TIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP-SVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQ 150 (231)
T ss_dssp SCCSS---STTTTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHH
T ss_pred CCCCC---CCCCCCEEEEEecCCCCCCCcEEeeECCCCCC-CCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhh
Confidence 99986 35689999999999999999999999997655 45788999999988754 456889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.... .++..|+|||....+.+.|++
T Consensus 151 ~~~~---~~~~~~~Ca~~~~~~~~~C~G 175 (231)
T 2aiq_A 151 AAYK---GLAATTLCAGILEGGKDTCKG 175 (231)
T ss_dssp HHCT---TCCSSEEEEECTTCSCBCCTT
T ss_pred hhhc---CCCcCcEEeccCCCCCcccCC
Confidence 6432 278999999998888999997
No 89
>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*
Probab=99.90 E-value=7.9e-24 Score=217.69 Aligned_cols=178 Identities=33% Similarity=0.605 Sum_probs=147.1
Q ss_pred ccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||..+.+++|||++++.. ...++||||||+++||||||||+... ..+.|++|..+.... +.....+.|.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~~---~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~ 76 (250)
T 1aut_C 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDES---KKLLVRLGEYDLRRW-EKWELDLDIKEVFV 76 (250)
T ss_dssp CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSC---SCCEEEESCCBTTCC-CTTCEEEEEEEEEE
T ss_pred CCCCEECCCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCCC---CceEEEEcccccCCC-CCccEEEEEEEEEE
Confidence 67889999999999999875 34689999999999999999999653 357889999876543 23345678999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC-----ccCCCceEEEeeccccCCCCcc-----hhccccc
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE-----KFTQRTGTVVGWGRVEESGQIA-----SDLRATQ 342 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~-----~~~~~~~~v~GwG~~~~~~~~~-----~~L~~~~ 342 (713)
||+|+.. ...+|||||+|.+|+.+++.++|||||.... ...+..+.++|||.+...+... ..|+++.
T Consensus 77 Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~ 153 (250)
T 1aut_C 77 HPNYSKS---TTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIK 153 (250)
T ss_dssp CTTCBTT---TTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEE
T ss_pred CCCCCCC---CCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEE
Confidence 9999863 5689999999999999999999999997532 2457789999999887655443 4799999
Q ss_pred ccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 343 VPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 343 ~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+++++..+|.+.. ...++.+|+|||...++.++|++
T Consensus 154 ~~i~~~~~C~~~~--~~~~~~~~~Cag~~~~~~~~C~G 189 (250)
T 1aut_C 154 IPVVPHNECSEVM--SNMVSENMLCAGILGDRQDACEG 189 (250)
T ss_dssp EEEECHHHHHHHC--SSCCCTTEEEECCTTCCCBCCTT
T ss_pred EEEecHHHhhHHh--ccCCCCCEEEeCCCCCCCCCCCC
Confidence 9999999998643 23578999999998888999997
No 90
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*
Probab=99.90 E-value=1e-23 Score=215.13 Aligned_cols=179 Identities=32% Similarity=0.593 Sum_probs=150.0
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCC-CCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSS-KRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~-~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||.++.+++|||++++. +.+.||||||+++||||||||+... .....+.|.+|..++... ......+.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~--~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~---~~~~~~v~~i~~ 75 (242)
T 3tvj_B 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSP---HYTQAWSEAVFI 75 (242)
T ss_dssp CBSCEECCTTSSTTEEEEE--SSEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCSBTTCS---CCEEEEEEEEEE
T ss_pred CcCCeeCCCCCCCCEEEEe--cCCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccccccCc---ccceeeEEEEEe
Confidence 6789999999999999998 5789999999999999999999764 334467888998876543 236678899999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC---ccCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE---KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
||+|+.. ..+++|||||+|.+|+.+++.++|||||.... ...+..+.++|||.+.. +..+..|+++.+++++..
T Consensus 76 hp~y~~~--~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~~~i~~~~ 152 (242)
T 3tvj_B 76 HEGYTHD--AGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQ 152 (242)
T ss_dssp CTTCCTT--SCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEEEEBCCHH
T ss_pred CCCCCCC--CCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEeeeEEcHH
Confidence 9999863 34679999999999999999999999998764 44677899999998875 677889999999999999
Q ss_pred hhhcCCC----ccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPG----FEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~----~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|..... ....++.+|+|||...++.+.|++
T Consensus 153 ~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 187 (242)
T 3tvj_B 153 KCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG 187 (242)
T ss_dssp HHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTT
T ss_pred HHHHhhccCCcccccccCCeEEECCCCCCCccccC
Confidence 9986422 123588999999999889999986
No 91
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Probab=99.89 E-value=2e-23 Score=212.61 Aligned_cols=180 Identities=29% Similarity=0.580 Sum_probs=149.1
Q ss_pred ccccccccCcCCchhhhhhc--cCc--eeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ--AGK--FFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e--~~~--~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||..+.+.+|||++++.. .+. ++||||||+++||||||||+... ..+.|++|..+.... +.....+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~---~~~~V~~G~~~~~~~-~~~~~~~~v~~ 76 (236)
T 1elt_A 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSA---RTWRVVLGEHNLNTN-EGKEQIMTVNS 76 (236)
T ss_dssp CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSC---CCEEEEESCSBTTSC-CSCCEEECEEE
T ss_pred CCCCEECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCCc---CceEEEEccccCCCC-CCCcEEEEEEE
Confidence 67888999999999999974 233 88999999999999999999753 467899999876543 23345678999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.... ...+|||||+|.+|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.+++++.
T Consensus 77 i~~hp~y~~~~~-~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 155 (236)
T 1elt_A 77 VFIHSGWNSDDV-AGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDH 155 (236)
T ss_dssp EEECTTCCTTCG-GGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECH
T ss_pred EEECCCCCCCCC-CCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCH
Confidence 999999986421 227899999999999999999999999876544 577899999999988778889999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|.....+...++..|+||+.. +.++|++
T Consensus 156 ~~C~~~~~~~~~~~~~~~Ca~~~--~~~~C~G 185 (236)
T 1elt_A 156 ATCSSSGWWGSTVKTTMVCAGGG--ANSGCNG 185 (236)
T ss_dssp HHHTSTTTTGGGSCTTEEEECCS--SCBCCTT
T ss_pred HHhccccccCCcCCcceEEecCC--CCccCCC
Confidence 99987644555688999999943 4788986
No 92
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A
Probab=99.89 E-value=3.2e-23 Score=209.58 Aligned_cols=175 Identities=30% Similarity=0.492 Sum_probs=145.9
Q ss_pred ccccccccCcCCchhhhhhccC----ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG----KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~----~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+++|||++.+.... .++||||||+++||||||||+. ....|++|..+.... ......+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~ 74 (226)
T 4ag1_A 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG-----RSITVTLGAHNITEE-EDTWQKLEVIK 74 (226)
T ss_dssp CBSCEECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCC-----SEEEEEESCSBTTSC-CTTCEEEEEEE
T ss_pred CCCCEECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCC-----CCeEEEeCCcccCCC-CCcceEEEEEE
Confidence 6788999999999999987432 6889999999999999999983 467899998876553 33446788999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.. ..++|||||+|.+|+.++..++|+|||..... ..+..+.++|||.+...+..+..|+++.+++++.
T Consensus 75 ~~~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 151 (226)
T 4ag1_A 75 QFRHPKYNTS---TLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDP 151 (226)
T ss_dssp EEECTTCCTT---TCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECG
T ss_pred EEeCCCCCCC---CCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcCh
Confidence 9999999863 56799999999999999999999999976654 4577899999999988788889999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|..+.. ..+..|+||+....+.+.|++
T Consensus 152 ~~C~~~~~---~~~~~~~Ca~~~~~~~~~C~G 180 (226)
T 4ag1_A 152 QACSHFRD---FDHNLQLCVGNPRKTKSAFKG 180 (226)
T ss_dssp GGGTTSTT---CCTTTEEEESCTTSCCBCCTT
T ss_pred HHcccccC---cCccceEeeccCCCCCcCccC
Confidence 99985433 347889999998889999986
No 93
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Probab=99.89 E-value=2.8e-23 Score=210.07 Aligned_cols=172 Identities=26% Similarity=0.508 Sum_probs=146.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++..++|||++++...+.++||||||+++||||||||+.... .....|++|..+...........+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h 79 (225)
T 1a7s_A 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQN-PGVSTVVLGAYDLRRRERQSRQTFSISSMSEN 79 (225)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC-----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECS
T ss_pred CCCCEECCCCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCCCC-CCceEEEEeeeECCCCCCcceeEEeEEEEecc
Confidence 67888999999999999988788999999999999999999997633 34578889998866544333467889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
+|+. ....+|||||+|.+|+.+++.++|+|||..... ..+..+.++|||.+...+..+..|+++.+++++...|.
T Consensus 80 -~y~~---~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~ 155 (225)
T 1a7s_A 80 -GYDP---QQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR 155 (225)
T ss_dssp -SCBT---TTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSC
T ss_pred -cccC---CCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhc
Confidence 9986 367899999999999999999999999976654 35778999999999888888899999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
. +|+|||....+.+.|++
T Consensus 156 ~----------~~~Ca~~~~~~~~~C~G 173 (225)
T 1a7s_A 156 P----------NNVCTGVLTRRGGICNG 173 (225)
T ss_dssp T----------TEEEEECSSSSCBCCTT
T ss_pred c----------CceEEeccCCCCCcccC
Confidence 6 79999998888899987
No 94
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...
Probab=99.89 E-value=3e-23 Score=209.41 Aligned_cols=174 Identities=37% Similarity=0.713 Sum_probs=147.8
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++.+. .+.++|||+||+++||||||||+.. ...|++|..+.... ......+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~-~~~~~C~GtLI~~~~VLTAAhC~~~-----~~~v~~g~~~~~~~-~~~~~~~~v~~~~~h 73 (223)
T 4i8h_A 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKS-----GIQVRLGEDNINVV-EGNEQFISASKSIVH 73 (223)
T ss_dssp CBSCEECCTTSSTTEEEEE-SSSEEEEEEECSSSEEEECGGGCCS-----SCEEEESCSSTTSC-CSCCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCeEEEec-CCCcEEEEEEEcCCEEEecHHhCCC-----CcEEEEcccccccc-CCCcEEEEEeEEEEC
Confidence 6788999999999999997 4568899999999999999999863 56788998876533 234456789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCC-CcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG-QIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~c~ 352 (713)
|+|+.. ..++||||++|.+|+.++..++|+|||... ...+..+.+.|||.+...+ ..+..|+++.+++++...|+
T Consensus 74 p~y~~~---~~~~DIAll~L~~~~~~~~~v~pi~l~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~ 149 (223)
T 4i8h_A 74 PSYNSN---TLNNDIMLIKLKSAASLNSRVASISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK 149 (223)
T ss_dssp TTCCTT---TCTTCCEEEEESSCCCCBTTBCCCBCCSSC-CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHH
T ss_pred cCCCCC---CCcCCEEEEEECCcCcCCCceeceECCCCC-CCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHH
Confidence 999864 567999999999999999999999999765 4567889999999987644 55788999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
... ...++.+|+|||+...+.+.|++
T Consensus 150 ~~~--~~~~~~~~~Ca~~~~~~~~~C~G 175 (223)
T 4i8h_A 150 SAY--PGQITSNMFCAGYLEGGKDSCQG 175 (223)
T ss_dssp HHS--TTTCCTTEEEESCTTSSCBCCTT
T ss_pred Hhh--CCCCCCCeEeccCCCCCCccCCC
Confidence 643 34688999999998889999986
No 95
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}
Probab=99.89 E-value=2.8e-23 Score=211.55 Aligned_cols=178 Identities=32% Similarity=0.590 Sum_probs=150.9
Q ss_pred ccccccccCcCCchhhhhhcc--CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
|+||.++..++|||++.+... +.++||||||+++||||||||+. ....|.+|..+.....+.......+.+++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 75 (238)
T 4e7n_A 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR-----KNFRIKLGMHSKKVPNEDEQTRVPKEKFF 75 (238)
T ss_dssp CBSCEECCTTSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCC-----SSCEEEESCSCSSSCCTTCEEECEEEEEC
T ss_pred CCCCeeCCCCCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCC-----CCCeEEeceeeccccCCCceeEeeeeeEE
Confidence 678999999999999999754 67899999999999999999975 35678889887665555555666778888
Q ss_pred eCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCC-CCcchhcccccccccChhh
Q psy6523 272 THPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEES-GQIASDLRATQVPVMSNQE 350 (713)
Q Consensus 272 ~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~L~~~~~~~~~~~~ 350 (713)
.||.|+.. .+++|||||+|.+|+.++..++|+|||..... .+..+.++|||.+... +..+..|+++.+++++...
T Consensus 76 ~h~~~~~~---~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (238)
T 4e7n_A 76 CLSSKNYT---LWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPS-VGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEM 151 (238)
T ss_dssp SSTTCCCC---SSSCCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGG
T ss_pred cCCCCCCC---CCCCcEEEEEeCCCccCCCceeeeeCCCCCCC-CCCEEEEEECCCCCCCCCCCCccceEeeccccCHHH
Confidence 89999863 56899999999999999999999999976544 4788999999998754 4778899999999999999
Q ss_pred hhcCC-CccccccCcccccCCCCCCCCCccc
Q psy6523 351 CRQFP-GFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 351 c~~~~-~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|+... .+...++..|+|||...++.++|++
T Consensus 152 C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 182 (238)
T 4e7n_A 152 CRAPYPEFELPATSRTLCAGILEGGKDTCKG 182 (238)
T ss_dssp GTTTCGGGCCCSCCSEEEEECTTCSCBCCTT
T ss_pred HhhhcccccCCCCCCeEEeCCCCCCCccCCC
Confidence 98753 3335688999999999999999997
No 96
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2
Probab=99.89 E-value=4.7e-24 Score=218.06 Aligned_cols=181 Identities=31% Similarity=0.561 Sum_probs=145.3
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCC----CCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK----RQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~----~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||..+.+++|||++++.. ...||||||+++||||||||+.... ....+.|++|.++.....+ ...+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~--~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~--~~~~~v~~ 76 (242)
T 2qy0_B 1 IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMK--LGNHPIRR 76 (242)
T ss_dssp CBSCEECCTTSSTTEEEEES--SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHH--HCCCCEEE
T ss_pred CCCCEECCCCCCCcEEEEcc--CCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeecccccccc--ccceeEEE
Confidence 67889999999999998875 3679999999999999999997432 2345678899877543211 23467899
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+......+.+|||||+|.+|+.+++.++|||||..... ..+..+.++|||.+... .+..|+++.+++++.
T Consensus 77 i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~L~~~~~~~~~~ 154 (242)
T 2qy0_B 77 VSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANP 154 (242)
T ss_dssp EEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCH
T ss_pred EEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc--CCccceEEEEEEeCH
Confidence 999999997655567899999999999999999999999976543 35677899999988754 678899999999999
Q ss_pred hhhhcCCC---ccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPG---FEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~---~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|..... ....++.+|+|||...++.++|++
T Consensus 155 ~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 189 (242)
T 2qy0_B 155 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG 189 (242)
T ss_dssp HHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTT
T ss_pred HHHHHHhccccccccCCCCEEeccCCCCCCccccC
Confidence 99986322 123478999999998888999987
No 97
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*
Probab=99.89 E-value=3.1e-23 Score=210.85 Aligned_cols=176 Identities=26% Similarity=0.538 Sum_probs=149.8
Q ss_pred ccccccccCcCCchhhhhhcc--CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
|+||.++..++|||++.+... +.++||||||+++||||||||+. ....|.+|..+.....+.......+.+++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T 3s9c_A 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR-----RNIRIKLGMHSKNIRNEDEQIRVPRGKYF 75 (234)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCC-----TTEEEEESCSSSSSCCTTCEEECEEEEEC
T ss_pred CCCCeeCCCCCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcC-----CCceEEEeecccccccCCcceEEeeeEEE
Confidence 678999999999999999755 56899999999999999999985 45788899888665555555566777888
Q ss_pred eCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 272 THPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 272 ~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
.||.|+. ...++|||||+|.+|+.++..++|||||...... +..+.++|||.+... ..+..|+.+.+++++...|
T Consensus 76 ~h~~~~~---~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~~-~~~~~v~GwG~~~~~-~~~~~l~~~~~~~~~~~~C 150 (234)
T 3s9c_A 76 CLNTKFP---NGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGV-GSRCRIMGWGKISTT-TYPDVPHCTNIFIVKHKWC 150 (234)
T ss_dssp CSSCSST---TCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCCT-TCEEEEEESSCSBTT-BCCSSCEEEEEEEECGGGT
T ss_pred eCCCCCC---CCCcCceEEEEECCccccCCcccccccCCCCCCC-CCeEEEEeeCCCCCC-CCCccccccceEecCHHHh
Confidence 8999986 3568999999999999999999999999876544 788999999998765 6788999999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...... ..++..|+|||...++.++|++
T Consensus 151 ~~~~~~-~~~~~~~~Ca~~~~~~~~~C~G 178 (234)
T 3s9c_A 151 EPLYPW-VPADSRTLCAGILKGGRDTCHG 178 (234)
T ss_dssp TTTCTT-SCTTSSEEEEECTTSSCBCCTT
T ss_pred hhcccC-CCCCcceEEeecCCCCCccCCC
Confidence 876332 4578999999999999999987
No 98
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Probab=99.89 E-value=8.4e-24 Score=232.50 Aligned_cols=191 Identities=31% Similarity=0.585 Sum_probs=147.0
Q ss_pred CCCCCc----ccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCC----CCceEEEEccccCC
Q psy6523 184 GCGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKR----QKDLIVVISEHNRA 255 (713)
Q Consensus 184 ~~~~~~----~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~----~~~~vv~ig~~~~~ 255 (713)
.||.+. ...||+||..+..++|||++++.. ...||||||+++||||||||+..... ...+.|++|.++..
T Consensus 144 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~ 221 (399)
T 1gpz_A 144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE 221 (399)
T ss_dssp CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEES--SSEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCSBHH
T ss_pred CCCCcCCcccCCCEEECCEECCCCCCCCEEEECC--CCCeEEEEeCCCEEEeChhcccccccccCCcceEEEEecccccc
Confidence 477752 347999999999999999998753 24799999999999999999975432 23567889988754
Q ss_pred cccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCc
Q psy6523 256 TVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQI 334 (713)
Q Consensus 256 ~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~ 334 (713)
...+ ...+.|.+++.||+|+......+++|||||+|.+|+.+++.++|||||.....+ .+..+.++|||.+.. ..
T Consensus 222 ~~~~--~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~--~~ 297 (399)
T 1gpz_A 222 ELMK--LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KI 297 (399)
T ss_dssp HHHH--TCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-------C
T ss_pred cccc--ccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCC--cc
Confidence 3221 224678999999999876555678999999999999999999999999876543 467789999998875 35
Q ss_pred chhcccccccccChhhhhcCCCc---cccccCcccccCCCCCCCCCccc
Q psy6523 335 ASDLRATQVPVMSNQECRQFPGF---EAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 335 ~~~L~~~~~~~~~~~~c~~~~~~---~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+..|+++.+++++...|.+.... ...++.+|+|||...++.|+|++
T Consensus 298 ~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~G 346 (399)
T 1gpz_A 298 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQG 346 (399)
T ss_dssp CSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCS
T ss_pred CccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCC
Confidence 77899999999999999875432 23478999999998888999987
No 99
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Probab=99.89 E-value=2.1e-23 Score=213.70 Aligned_cols=178 Identities=34% Similarity=0.615 Sum_probs=143.4
Q ss_pred ccccccccCcCCchhhhhhcc-C--ceeeeeeeechhhHHhhcccccCCC-CCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA-G--KFFCGGTLISDRYVLTAAHCVRSSK-RQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~-~--~~~cggslI~~r~vltaa~c~~~~~-~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+++|||+++|... + .++||||||+++||||||||+.... ....+.|.+|..+... ..+.+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~----~~~~~~v~~ 76 (245)
T 2f9n_A 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYY----QDQLLPVSR 76 (245)
T ss_dssp CBSCEECCTTSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCSBTTT----TCCCBCEEE
T ss_pred CCCCeECCCCCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCccccc----CceEEEEEE
Confidence 678899999999999999753 2 5899999999999999999996532 2345678888876542 224567999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCc--chhccccccccc
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQI--ASDLRATQVPVM 346 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~--~~~L~~~~~~~~ 346 (713)
++.||+|+.. ...+|||||+|.+|+.++..++|||||...+.+ .+..|.++|||.+...+.. +..|+++.++++
T Consensus 77 i~~Hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~ 153 (245)
T 2f9n_A 77 IIVHPQFYII---QTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIM 153 (245)
T ss_dssp EEECTTCCSS---CCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEE
T ss_pred EEECCCccCC---CCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEc
Confidence 9999999863 568999999999999999999999999876554 5778999999998866554 458999999999
Q ss_pred ChhhhhcCCCcc-------ccccCcccccCCCCCCCCCccc
Q psy6523 347 SNQECRQFPGFE-------AKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 347 ~~~~c~~~~~~~-------~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+...|....... ..++..|+|||. .+.++|++
T Consensus 154 ~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~G 192 (245)
T 2f9n_A 154 ENHICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQG 192 (245)
T ss_dssp CHHHHHHHHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTT
T ss_pred CHHHhhhhhcccccccccccccccccEeecC--CCCCcCCC
Confidence 999997632211 247899999984 56789987
No 100
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*
Probab=99.89 E-value=4.3e-23 Score=209.65 Aligned_cols=177 Identities=27% Similarity=0.471 Sum_probs=149.9
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++..++|||++.+.....++||||||+++||||||||+. ....+.+|..+.....+.......+..++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h 75 (234)
T 3s69_A 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDN-----TNFQMKLGVHSKKVLNEDEQTRNPKEKFICP 75 (234)
T ss_dssp CBSCEECCTTSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCC-----SSCEEEESCCCSSSCCTTCEEECEEEEEECT
T ss_pred CCCCccCCCCCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCC-----CCceEEecccccccccCCcceeeceEEEECC
Confidence 67899999999999999988788999999999999999999984 3467888888766555555566677788889
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCC-CcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG-QIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~c~ 352 (713)
|.|+.. .+++|||||+|.+|+.+++.++|+|||...... +..+.++|||.+.... ..+..|+.+.+++++...|.
T Consensus 76 ~~~~~~---~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~-~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~ 151 (234)
T 3s69_A 76 NKKNDE---VLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSV-GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQ 151 (234)
T ss_dssp TCCTTC---TTSSCCEEEEESSCCCCBTTBCCCCCCSSCCCT-TCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHH
T ss_pred CccCCC---CCcccEEEEeeCCcCCCCCcceeeecCCCCCCC-CCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHh
Confidence 999863 568999999999999999999999999866543 7889999999987644 66889999999999999998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..... ..++..|+|||...++.+.|++
T Consensus 152 ~~~~~-~~~~~~~~Ca~~~~~~~~~C~G 178 (234)
T 3s69_A 152 AGYPE-LLTEYRTLCAGILEGGKDTCGG 178 (234)
T ss_dssp HHCTT-CCTTSCEEEEECTTCSCBCCTT
T ss_pred hhccc-ccCCcceEeccCCCCCCccCCC
Confidence 74321 3567899999999989999987
No 101
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A
Probab=99.89 E-value=4.9e-23 Score=208.32 Aligned_cols=177 Identities=31% Similarity=0.529 Sum_probs=148.7
Q ss_pred ccccccccCcCCchhhhhhcc---C-ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA---G-KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~---~-~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+++|||++.+... + .++||||||+++||||||||+. ....|++|..+.... +.....+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~-----~~~~v~~G~~~~~~~-~~~~~~~~v~~ 74 (227)
T 3fzz_A 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG-----RSMTVTLGAHNIKAK-EETQQIIPVAK 74 (227)
T ss_dssp CBTCEECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCCC-----EEEEEEESCSBTTSC-CTTCEEEEEEE
T ss_pred CCCCEECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccCC-----CCcEEEEcccccCCC-CCCceEEEEEE
Confidence 678899999999999988742 3 6899999999999999999973 467888998876543 23346678999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.. ...+||||++|.+|+.+++.++|||||.....+ .+..+.++|||.+...+..+..|+++.+++++.
T Consensus 75 ~~~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 151 (227)
T 3fzz_A 75 AIPHPDYNPD---DRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKD 151 (227)
T ss_dssp EEECTTCBTT---TTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCH
T ss_pred EEECcCCCCC---CCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecH
Confidence 9999999863 567999999999999999999999999876643 577899999999988888899999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|..... ....+..|+|||....+.+.|++
T Consensus 152 ~~C~~~~~-~~~~~~~~~Ca~~~~~~~~~C~g 182 (227)
T 3fzz_A 152 QVCESQFQ-SSYNRANEICVGDSKIKGASFEE 182 (227)
T ss_dssp HHHHHHHT-TTCCTTTEEEECCCSSCBCCTTT
T ss_pred HHhhhhhc-cccCCCceEEEeCCCCCCccccc
Confidence 99986322 11247899999998888999986
No 102
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}
Probab=99.89 E-value=3e-23 Score=210.76 Aligned_cols=178 Identities=22% Similarity=0.423 Sum_probs=151.6
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++..++|||++++...+.++||||||+++||||||||+... ....+.|++|..++... .....|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~-~~~~~~v~~G~~~~~~~----~~~~~v~~i~~h 75 (235)
T 3h7t_A 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGT-KPSDISIHYGSSYRTTK----GTSVMAKKIYIV 75 (235)
T ss_dssp CBTCEECCTTTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHTTC-CGGGEEEEESCSBSSSS----SEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCCCC-CCCeeEEEcCccccccC----CceeeeeeEEee
Confidence 6788999999999999999888899999999999999999999743 34567899998876632 267889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCC-CcccccCCCCCC-ccCCCceEEEeeccccCCC-CcchhcccccccccChhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKP-TVSPVCLPQLGE-KFTQRTGTVVGWGRVEESG-QIASDLRATQVPVMSNQE 350 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~-~i~~icl~~~~~-~~~~~~~~v~GwG~~~~~~-~~~~~L~~~~~~~~~~~~ 350 (713)
+|+. ....+||||++|.+|+.++. .++|+|||.... ...+..+.++|||.+...+ ..+..|+++.+++++...
T Consensus 76 -~y~~---~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (235)
T 3h7t_A 76 -RYHP---LTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKS 151 (235)
T ss_dssp -SCBT---TTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHH
T ss_pred -ecCC---CCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHH
Confidence 9986 46689999999999999999 999999998765 3467789999999998766 778999999999999999
Q ss_pred hhcCCC---ccccccCcccccCCCCCCCCCccc
Q psy6523 351 CRQFPG---FEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 351 c~~~~~---~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|..... ....++.+|+|||...++.+.|++
T Consensus 152 C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 184 (235)
T 3h7t_A 152 CEEQYKQIEADKYIYDGVFCAGGEYDETYIGYG 184 (235)
T ss_dssp HHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTT
T ss_pred HHHHhhhcccCccccCCeEecCCCCCCCccccC
Confidence 986422 122488999999999888999986
No 103
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2
Probab=99.89 E-value=5e-23 Score=207.82 Aligned_cols=175 Identities=27% Similarity=0.491 Sum_probs=148.5
Q ss_pred ccccccccCcCCchhhhhhccC----ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAG----KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~----~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+++|||++.+.... .++||||||+++||||||||+. ....|++|..+.... +.....+.|.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~-----~~~~v~~g~~~~~~~-~~~~~~~~v~~ 74 (224)
T 3rp2_A 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG-----REITVILGAHDVRKR-ESTQQKIKVEK 74 (224)
T ss_dssp CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC-----SEEEEEESCSBTTSC-CTTCEEEEEEE
T ss_pred CCCCEECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCC-----CCcEEEEeccccCcC-CCCcEEEEEEE
Confidence 6789999999999999987533 6899999999999999999973 467889998875543 23446788999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccCh
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSN 348 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~ 348 (713)
++.||+|+.. ...+||||++|.+|+.+++.++|+|||..... ..+..+.++|||.+...+..+..|+++.+++++.
T Consensus 75 ~~~hp~y~~~---~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~ 151 (224)
T 3rp2_A 75 QIIHESYNSV---PNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDE 151 (224)
T ss_dssp EEECTTCCSS---SCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECG
T ss_pred EEECCCccCC---CCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecCh
Confidence 9999999864 56799999999999999999999999987664 3567899999999987777788999999999999
Q ss_pred hhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 349 ~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|..+. ...+..|+||+....+.+.|++
T Consensus 152 ~~C~~~~---~~~~~~~~Ca~~~~~~~~~C~G 180 (224)
T 3rp2_A 152 KACVDYR---YYEYKFQVCVGSPTTLRAAFMG 180 (224)
T ss_dssp GGTTTTT---CCCTTTEEEECCTTSCCBCCTT
T ss_pred HHhcccc---ccCcCCEEEecCCCCCCeeccC
Confidence 9998733 2347889999999888999986
No 104
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=99.89 E-value=7.3e-23 Score=213.39 Aligned_cols=196 Identities=27% Similarity=0.497 Sum_probs=160.2
Q ss_pred CCCCCCc--ccccccccccccCcCCchhhhhhccC-----ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCC
Q psy6523 183 EGCGVPN--RMDRIVGGWTTEVNEYPWVVALEQAG-----KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRA 255 (713)
Q Consensus 183 ~~~~~~~--~~~rI~~g~~~~~~~~P~~~~l~e~~-----~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~ 255 (713)
..||.+. ...||+||..+.+++|||+++|.... .++||||||+++||||||||+........++|+++..+..
T Consensus 11 ~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~~~~ 90 (276)
T 2vnt_A 11 FQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLN 90 (276)
T ss_dssp CCTTCCCC-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCCBSS
T ss_pred CCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccCCCCCccEEEEeeeeecc
Confidence 4588743 34699999999999999999987432 4789999999999999999998877777888888888765
Q ss_pred cccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCC----CCCCCcccccCCCCCCcc-CCCceEEEeeccccC
Q psy6523 256 TVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPL----EFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEE 330 (713)
Q Consensus 256 ~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~----~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~ 330 (713)
.. +.....+.|.+++.||+|+... ..+++||||++|..++ .++..++|+|||.....+ .+..+.+.|||.+..
T Consensus 91 ~~-~~~~~~~~v~~i~~Hp~y~~~~-~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~ 168 (276)
T 2vnt_A 91 SN-TQGEMKFEVENLILHKDYSADT-LAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENS 168 (276)
T ss_dssp SC-CTTCEEEEEEEEEECTTCEECS-SCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSST
T ss_pred CC-CCceEEEEEEEEEEcccccccc-ccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeecccc
Confidence 44 3345678899999999998643 3467999999998765 689999999999876655 467789999998876
Q ss_pred CC-CcchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 331 SG-QIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 331 ~~-~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.+ .....++.+.+++++..+|.+........+..|+|++...++.++|++
T Consensus 169 ~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~G 219 (276)
T 2vnt_A 169 TDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 219 (276)
T ss_dssp TCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTT
T ss_pred CCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCC
Confidence 44 456788999999999999998777777788999999999999999997
No 105
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Probab=99.88 E-value=2.8e-23 Score=212.12 Aligned_cols=177 Identities=27% Similarity=0.555 Sum_probs=139.7
Q ss_pred ccccccCcCCchhhhhhc--cC--ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccccc-ceEEEEeeEE
Q psy6523 196 GGWTTEVNEYPWVVALEQ--AG--KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYET-QIETRRVVKV 270 (713)
Q Consensus 196 ~g~~~~~~~~P~~~~l~e--~~--~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~-~~~~~~v~~i 270 (713)
||..+.+.+|||+++|.. .+ .++||||||+++||||||||+... ..+.|++|..++....+. ....+.|.++
T Consensus 1 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~~---~~~~v~~G~~~~~~~~~~~~~~~~~v~~i 77 (240)
T 1fon_A 1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTS---RTYQVVLGEYDRSVLEGSEQVIPINAGDL 77 (240)
T ss_dssp --------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTT---SCEEEEEEEEETTEEEEEEEEEEECTTSE
T ss_pred CCccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCCC---CceEEEeeeeeccccCCCceeEeeeeeEE
Confidence 466778899999999975 33 389999999999999999999763 467888998876543221 2256788899
Q ss_pred eeCCCCCcCCCCCCc--cceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccC
Q psy6523 271 LTHPKYNAQGAKSHD--HDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMS 347 (713)
Q Consensus 271 i~h~~~~~~~~~~~~--~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~ 347 (713)
+.||+|+.. ... +|||||+|.+|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.+++++
T Consensus 78 ~~Hp~y~~~---~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~ 154 (240)
T 1fon_A 78 FVHPLWNSN---CVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVD 154 (240)
T ss_dssp EECTTCCTT---CGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEEC
T ss_pred EECCCCcCC---CccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeC
Confidence 999999864 345 999999999999999999999999876544 57789999999998877888999999999999
Q ss_pred hhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 348 NQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 348 ~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
...|.+...+...++..|+||+.. +.+.|++
T Consensus 155 ~~~C~~~~~~~~~~~~~~~Ca~~~--~~~~C~G 185 (240)
T 1fon_A 155 YEHCSQWDWWGITVKKTMVCAGGD--TRSGCNG 185 (240)
T ss_dssp HHHHTSTTTTGGGCCTTEEEECCS--SSCSTTS
T ss_pred HHHhccceecCCccccceEeecCC--CCcccCC
Confidence 999988654555688999999953 3888986
No 106
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*
Probab=99.88 E-value=6.8e-23 Score=206.20 Aligned_cols=170 Identities=28% Similarity=0.509 Sum_probs=146.7
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++++...+.++||||||+++||||||||+.... ...+.|++|..+.... +.....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-~~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~h 78 (218)
T 2z7f_E 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVN-VRAVRVVLGAHNLSRR-EPTRQVFAVQRIFEN 78 (218)
T ss_dssp CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSC-GGGCEEEESCSBTTSC-CTTCEEEEEEEEEES
T ss_pred CCCCEECCCCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCCC-cCcEEEEEeceecCCC-CCceEEEEEEEEEcc
Confidence 67888999999999999998788999999999999999999997643 2467889999876543 233467889999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChhhhh
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~ 352 (713)
+|+.. ...+||||++|.+|+.+++.++|+|||.....+ .+..+.++|||.+...+..+..|+++.++++ ...|.
T Consensus 79 -~y~~~---~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~ 153 (218)
T 2z7f_E 79 -GYDPV---NLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCR 153 (218)
T ss_dssp -CCBTT---TTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEE-CTTCC
T ss_pred -CCCCC---CCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEe-hhHcC
Confidence 99863 578999999999999999999999999876654 6778999999999888888899999999999 99998
Q ss_pred cCCCccccccCcccccCCCCCCCCCccc
Q psy6523 353 QFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 353 ~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.. |+||+....+.+.|++
T Consensus 154 ~~----------~~Ca~~~~~~~~~C~G 171 (218)
T 2z7f_E 154 RS----------NVCTLVRGRQAGVCFG 171 (218)
T ss_dssp TT----------SEEEECTTSCCBCCTT
T ss_pred cc----------eeeeccCCCCCeeCCC
Confidence 63 9999998888899986
No 107
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Probab=99.88 E-value=5e-23 Score=238.09 Aligned_cols=191 Identities=34% Similarity=0.664 Sum_probs=145.2
Q ss_pred CCCCCcccccccccccccCcCCchhhhhhcc---CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccccc
Q psy6523 184 GCGVPNRMDRIVGGWTTEVNEYPWVVALEQA---GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYET 260 (713)
Q Consensus 184 ~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~---~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~ 260 (713)
.||.. ...||+||..+.+++|||++.|... ..++||||||+++||||||||+........+.|++|..+.....+
T Consensus 379 ~Cg~~-~~~rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~- 456 (625)
T 2f83_A 379 ECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKE- 456 (625)
T ss_dssp SSCSC-CCSCCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCSBGGGCCS-
T ss_pred ccCCC-CCCceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEeccCCCCCC-
Confidence 47764 3479999999999999999999753 568999999999999999999987655566789999887654322
Q ss_pred ceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcc
Q psy6523 261 QIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLR 339 (713)
Q Consensus 261 ~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~ 339 (713)
....+.|.+++.||+|+.. ..++|||||+|.+|+.+++.++|||||..... ..+..+.++|||.+...+..++.|+
T Consensus 457 ~~~~~~V~~ii~Hp~y~~~---~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~~L~ 533 (625)
T 2f83_A 457 DTSFFGVQEIIIHDQYKMA---ESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQ 533 (625)
T ss_dssp SCCCEEEEEEEECTTCCBT---TTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCSBCB
T ss_pred CceEEeEEEEEECCccCcC---CccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCcccE
Confidence 2334689999999999864 56799999999999999999999999976554 3567799999999988778889999
Q ss_pred cccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 340 ATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 340 ~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
++.+++++..+|.+... ...++..|+|||+..++.++|++
T Consensus 534 ~~~v~i~~~~~C~~~~~-~~~i~~~~iCag~~~~~~d~C~G 573 (625)
T 2f83_A 534 KAKIPLVTNEECQKRYR-GHKITHKMICAGYREGGKDACKG 573 (625)
T ss_dssp CCEECCCCHHHHHTTCT-TSCCCTTBCCC----------CC
T ss_pred EEEEEEcCHHHHHHHhc-cCCCCCCeEEeecCCCCCcCCCC
Confidence 99999999999987532 23578999999998888999997
No 108
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Probab=99.88 E-value=4.8e-23 Score=212.45 Aligned_cols=183 Identities=36% Similarity=0.673 Sum_probs=147.9
Q ss_pred ccccccccCcCCchhhhhhcc--CceeeeeeeechhhHHhhcccccC-----CCCCCceEEEEccccCCcccccceEEEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA--GKFFCGGTLISDRYVLTAAHCVRS-----SKRQKDLIVVISEHNRATVYETQIETRR 266 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~--~~~~cggslI~~r~vltaa~c~~~-----~~~~~~~vv~ig~~~~~~~~d~~~~~~~ 266 (713)
|+||.++.+++|||++++... +.++||||||+++||||||||+.. ......+.|++|..++....+.......
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~ 80 (259)
T 3rm2_H 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM 80 (259)
T ss_dssp CBSCEECCTTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEE
T ss_pred CCCCEECCCCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeE
Confidence 678899999999999999632 468999999999999999999953 2234567899999987665555556677
Q ss_pred eeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc----cCCCceEEEeeccccCCC------Ccch
Q psy6523 267 VVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK----FTQRTGTVVGWGRVEESG------QIAS 336 (713)
Q Consensus 267 v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~----~~~~~~~v~GwG~~~~~~------~~~~ 336 (713)
|.+++.||+|+.. ...++|||||+|.+|+.+++.++|||||..... ..+..+.++|||.+.... ..+.
T Consensus 81 v~~i~~hp~y~~~--~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~ 158 (259)
T 3rm2_H 81 LEKIYIHPRYNWR--ENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS 158 (259)
T ss_dssp EEEEEECTTCBTT--TTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCS
T ss_pred EEEEEECCCCCCC--CCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccc
Confidence 9999999999843 356799999999999999999999999975432 356789999999877532 2267
Q ss_pred hcccccccccChhhhhcCCCccccccCcccccCCCC---CCCCCccc
Q psy6523 337 DLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE---GGKDSCQV 380 (713)
Q Consensus 337 ~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~---~~~d~c~~ 380 (713)
.|+.+.+++++...|.... ...++.+|+|||+.. .+.+.|++
T Consensus 159 ~l~~~~~~~~~~~~C~~~~--~~~~~~~~~Cag~~~~~~~~~~~C~G 203 (259)
T 3rm2_H 159 VLQVVNLPIVERPVCKDST--RIRITDNMFCAGYKPDEGKRGDACEG 203 (259)
T ss_dssp BCEEEEEEBCCHHHHHHTC--SSCCCTTEEEECCCGGGSCCCBCCTT
T ss_pred cceEEEEEEeCHHHhhhhh--cccCCCceEeeeccCCCCCCCcccCC
Confidence 8999999999999998764 346789999999763 34588986
No 109
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Probab=99.88 E-value=1.6e-22 Score=206.52 Aligned_cols=175 Identities=28% Similarity=0.490 Sum_probs=143.1
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccc-cceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYE-TQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d-~~~~~~~v~~ii~ 272 (713)
|+||..+.. +|||++++...+.++||||||+++||||||||+.... ...+.|++|..+.....+ .......|.+++.
T Consensus 1 IvgG~~a~~-~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~ 78 (240)
T 1si5_H 1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRD-LKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVY 78 (240)
T ss_dssp CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSC-GGGEEEEESCSBSSCSTTTTTCEEEEEEEEEE
T ss_pred CCCCeeCCC-CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCCC-CccEEEEEeeeecCCCCCCCcceEEEEEEEEc
Confidence 678888888 9999999987788999999999999999999997643 346788999988665432 3346678899999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
||. .+||||++|.+|+.+++.++|||||.....+ .+..+.++|||.+...+ .+..|+++.+++++...|
T Consensus 79 ~p~---------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C 148 (240)
T 1si5_H 79 GPE---------GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKC 148 (240)
T ss_dssp CSS---------TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS-CCCBCEEEEEEEECGGGT
T ss_pred CCC---------CCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEeecCHHHh
Confidence 974 6899999999999999999999999865444 56789999999987644 567899999999999999
Q ss_pred hcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.+.......++..|+||+...++.+.|++
T Consensus 149 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~G 177 (240)
T 1si5_H 149 SQHHRGKVTLNESEICAGAEKIGSGPCEG 177 (240)
T ss_dssp CC-------CCTTEEEEECSSSCCBCCTT
T ss_pred hhhhcCCccCCCCEEeecCCCCCCEeccC
Confidence 87543222378999999998888999997
No 110
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=7.3e-23 Score=214.42 Aligned_cols=170 Identities=26% Similarity=0.544 Sum_probs=130.7
Q ss_pred CCCCCcccccccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccce
Q psy6523 184 GCGVPNRMDRIVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQI 262 (713)
Q Consensus 184 ~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~ 262 (713)
.||..... |..+..++|||+++|.. .+.++||||||+++||||||||+.... .+.|++|+.+.. ...
T Consensus 48 ~CG~~~~~-----g~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~---~~~V~~G~~~~~----~~~ 115 (283)
T 3f1s_B 48 ACGVLTSE-----KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHR---NITVKTYFNRTS----QDP 115 (283)
T ss_dssp CTTCCCC-------------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTSCS---SCEEEECTTC-C----CCC
T ss_pred ccCccccC-----CccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCccC---ceEEEEeeeeCC----CCc
Confidence 58876543 78888999999999975 567999999999999999999996543 678999987643 355
Q ss_pred EEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCC----CccCCCceEEEeeccccCCCCcchhc
Q psy6523 263 ETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG----EKFTQRTGTVVGWGRVEESGQIASDL 338 (713)
Q Consensus 263 ~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~----~~~~~~~~~v~GwG~~~~~~~~~~~L 338 (713)
..+.|.+++.||+|+. ..+++|||||+|.+|+.++.+++|||||... ....+..+.++|||. ..+..+..|
T Consensus 116 ~~~~v~~i~~Hp~y~~---~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L 190 (283)
T 3f1s_B 116 LMIKITHVHVHMRYDA---DAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSL 190 (283)
T ss_dssp EEEEEEEEEECTTCBT---TTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------C
T ss_pred EEEEeEEEEECCCCCC---CCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC--CCCCCCcee
Confidence 6788999999999986 3568999999999999999999999999765 345678899999999 456778899
Q ss_pred ccccccccChhhhhcCCCccccccCcccccCCCC
Q psy6523 339 RATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372 (713)
Q Consensus 339 ~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~ 372 (713)
+++.+++++...|++.. ...++.+|+|||...
T Consensus 191 ~~~~v~~~~~~~C~~~~--~~~~~~~~~Ca~~~~ 222 (283)
T 3f1s_B 191 TTRPVTLVEGEECGQVL--NVTVTTRTYCERSSV 222 (283)
T ss_dssp EEEEEEEECHHHHHHHH--TSCCCTTEEEEECSS
T ss_pred eEEEEeEeCHHHHhhhh--cCCCCCCeEcccCCC
Confidence 99999999999998753 346899999998654
No 111
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Probab=99.87 E-value=1.7e-22 Score=204.88 Aligned_cols=171 Identities=26% Similarity=0.519 Sum_probs=142.2
Q ss_pred ccccccccCcCCchhhhhhc----cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ----AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVK 269 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e----~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ 269 (713)
|+||.++.+.+|||++++.. ...++||||||+++||||||||+.. .....|++|..+.... .....+.+
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~---~~~~~v~~G~~~~~~~----~~~~~v~~ 73 (230)
T 2hlc_A 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD---AVSVVVYLGSAVQYEG----EAVVNSER 73 (230)
T ss_dssp CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT---EEEEEEEESCSBTTCC----SEEEECSE
T ss_pred CCCCeECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCC---CcceEEEEeeeecCCC----CeEEEEEE
Confidence 67888999999999999875 4678999999999999999999975 2357788998876541 26678999
Q ss_pred EeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCC---ccCCCceEEEeeccccCCCCcchhccccccccc
Q psy6523 270 VLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE---KFTQRTGTVVGWGRVEESGQIASDLRATQVPVM 346 (713)
Q Consensus 270 ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~---~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~ 346 (713)
++.||+|+.. ...+||||++|. |+.+++.++|||||...+ ...+..+.++|||.+.... ..|+++.++++
T Consensus 74 i~~hp~y~~~---~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~---~~l~~~~~~~~ 146 (230)
T 2hlc_A 74 IISHSMFNPD---TYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT---VILQYTYNLVI 146 (230)
T ss_dssp EEECTTCBTT---TTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC---CBCEEEEEEEE
T ss_pred EEECCCCCCC---CccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC---ceeEEEEEEEe
Confidence 9999999863 568999999999 999999999999998664 3467789999999887654 67899999999
Q ss_pred ChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 347 SNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 347 ~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
+...|.+.... ..++..|+||+. ..+.+.|++
T Consensus 147 ~~~~C~~~~~~-~~~~~~~~Ca~~-~~~~~~C~G 178 (230)
T 2hlc_A 147 DNDRCAQEYPP-GIIVESTICGDT-SDGKSPCFG 178 (230)
T ss_dssp CHHHHHTTSCT-TSSCTTEEEECC-TTSCBCCTT
T ss_pred CHHHhhhhhCC-CcccCCeEEecC-CCCCCcCCC
Confidence 99999875432 257899999987 456789986
No 112
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=203.85 Aligned_cols=172 Identities=26% Similarity=0.522 Sum_probs=141.9
Q ss_pred ccccccccCcCCchhhhhhcc-CceeeeeeeechhhHHhhcccccCCC-CCCceEEEEccccCCccc-ccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSK-RQKDLIVVISEHNRATVY-ETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~-~~~~cggslI~~r~vltaa~c~~~~~-~~~~~vv~ig~~~~~~~~-d~~~~~~~v~~i 270 (713)
|+||. +.+|||+++|... +.++||||||+++||||||||+.... ....+.|++|..+..... +...+...|.++
T Consensus 1 IvgG~---~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i 77 (234)
T 2asu_B 1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM 77 (234)
T ss_dssp CBSCE---ECCCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred CCCcc---cCCCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence 45665 5789999999865 67999999999999999999997543 334678899988765432 344677889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.||. .+|||||+|.+|+.++..++|||||.....+ .+..+.++|||.+...+ .+..|+++.+++++..
T Consensus 78 ~~hp~---------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~ 147 (234)
T 2asu_B 78 VCGPS---------GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG-NDTVLNVALLNVISNQ 147 (234)
T ss_dssp EECST---------TCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS-CTTBCEEEEEEEECHH
T ss_pred ecCCC---------CCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC-CCccceEEEeeEEcHH
Confidence 99985 4799999999999999999999999866543 57789999999987654 4678999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|.... ...++..|+||+...++.++|++
T Consensus 148 ~C~~~~--~~~~~~~~~Ca~~~~~~~~~C~G 176 (234)
T 2asu_B 148 ECNIKH--RGRVRESEMCTEGLLAPVGACEG 176 (234)
T ss_dssp HHHHHT--TTCCCTTEEEECCCSSCCBCCTT
T ss_pred Hccccc--CCccCcceEeecCCCCCCeeccC
Confidence 998643 34578999999998888999997
No 113
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Probab=99.86 E-value=6.8e-22 Score=182.55 Aligned_cols=128 Identities=38% Similarity=0.726 Sum_probs=109.2
Q ss_pred ccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 194 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
|+||..+.+++|||++++.. .+.++||||||+++||||||||+.. ....|++|..+.... +...+.+.|.+++.
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~~v~~G~~~~~~~-~~~~~~~~v~~i~~ 75 (131)
T 1yph_C 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT----TSDVVVAGEFDQGSS-SEKIQKLKIAKVFK 75 (131)
T ss_dssp CBTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCCC----TTSEEEESCSBTTCS-SSCCEEEEEEEEEE
T ss_pred CCCCEECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCCC----CCeEEEEeEccCCCC-CCceEEEEEEEEEe
Confidence 67899999999999999986 5568999999999999999999865 456788998876543 23346788999999
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeecccc
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVE 329 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~ 329 (713)
||+|+.. ..++||||++|.+|+.++++++|||||.....+ .+..|.++|||.+.
T Consensus 76 hp~y~~~---~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t~ 130 (131)
T 1yph_C 76 NSKYNSL---TINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTR 130 (131)
T ss_dssp CTTCCTT---TCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSC
T ss_pred CCCCCCC---CCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCccC
Confidence 9999864 568999999999999999999999999876654 67889999999874
No 114
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Probab=99.86 E-value=5.2e-22 Score=200.44 Aligned_cols=171 Identities=32% Similarity=0.556 Sum_probs=141.7
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||.++.+++|||++.+. +.||||||+++||||||||+........+.|++|..+.... ......+.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~----~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~---~~~~~~v~~i~~h 73 (224)
T 3beu_A 1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSS---SAVKVRSTKVLQA 73 (224)
T ss_dssp CBTCEECCTTTSTTEEEET----TTEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCSBTTCT---TCEEEEEEEEEEC
T ss_pred CCCCeECCCCCCCEEEEEC----CceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEeecCCC---CceEEEEEEEEeC
Confidence 6788999999999999985 57999999999999999999876555667888998775432 2356789999999
Q ss_pred CCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhhc
Q psy6523 274 PKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ 353 (713)
Q Consensus 274 ~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~ 353 (713)
|+|+.. .+.+||||++|.+|+.+ .++|++.... ..+..+.++|||.+...+..+..|+++.+++++...|+.
T Consensus 74 p~y~~~---~~~~DIALl~L~~~v~~----~~i~l~~~~~-~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~ 145 (224)
T 3beu_A 74 PGFTKE---TYGKDWALIKLAQPINQ----PTLKIATTTA-YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRS 145 (224)
T ss_dssp TTCCCG---GGSCCCEEEEESSCCCS----CCCEECCSST-TSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHH
T ss_pred CCcCCC---cCCCCEEEEEeCCCCCC----Cccccccccc-cCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhh
Confidence 999864 56799999999999964 5788886543 345589999999998888888999999999999999987
Q ss_pred CCCccccccCcccccCCCCCCCCCccc
Q psy6523 354 FPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 354 ~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.... ..++..|+|||....+.+.|++
T Consensus 146 ~~~~-~~~~~~~~Ca~~~~~~~~~C~G 171 (224)
T 3beu_A 146 SSSF-ILVANEMICAGYDTKQEDTCQG 171 (224)
T ss_dssp HCSS-CCCGGGEEEECCSSSSCBCCTT
T ss_pred hcCC-ccCCCCeEEeccCCCCCcCCCC
Confidence 5432 3478899999998888899987
No 115
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2
Probab=99.86 E-value=9.5e-22 Score=198.13 Aligned_cols=170 Identities=33% Similarity=0.543 Sum_probs=143.7
Q ss_pred ccccccccCcCCchhhhhhcc---CceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEE
Q psy6523 194 IVGGWTTEVNEYPWVVALEQA---GKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKV 270 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~---~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~i 270 (713)
|+||..+.+++|||++++... +.++||||||+++||||||||+.... ...+.|++|..+.... +.....+.|.++
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~~v~~G~~~~~~~-~~~~~~~~v~~i 78 (221)
T 1fuj_A 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIP-QRLVNVVLGAHNVRTQ-EPTQQHFSVAQV 78 (221)
T ss_dssp CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSC-GGGEEEEESCSBTTSC-CTTCEEEEEEEE
T ss_pred CCCCEECCCCCcCCEEEEEEecCCCCEEEEEEEecCCEEEEchHhcCcCC-CCceEEEEeeeeccCC-CCceEEEEEEEE
Confidence 678889999999999999743 46899999999999999999997643 2467888998876542 334567889999
Q ss_pred eeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCc-cCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 271 LTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEK-FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 271 i~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
+.| +|+.. ...+||||++|.+|+.+++.++|+|||..... ..+..+.++|||.+...+..+..|++..++++ ..
T Consensus 79 ~~h-~y~~~---~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~-~~ 153 (221)
T 1fuj_A 79 FLN-NYDAE---NKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TF 153 (221)
T ss_dssp EEC-CCBTT---TTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CT
T ss_pred EeC-CCCCC---CCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEE-ee
Confidence 999 99863 56899999999999999999999999987654 45778999999999887788899999999999 88
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|... |+||+....+.+.|++
T Consensus 154 ~C~~~----------~~Ca~~~~~~~~~C~G 174 (221)
T 1fuj_A 154 FCRPH----------NICTFVPRRKAGICFG 174 (221)
T ss_dssp TCCTT----------EEEEECSSSSCBCCTT
T ss_pred ecCCc----------eeeeccCCCCCCCCCC
Confidence 89753 9999998888899986
No 116
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0
Probab=99.86 E-value=4.5e-22 Score=201.31 Aligned_cols=176 Identities=28% Similarity=0.418 Sum_probs=145.2
Q ss_pred cccccccCcCCchhhhhhccCc--e-eeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEe
Q psy6523 195 VGGWTTEVNEYPWVVALEQAGK--F-FCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVL 271 (713)
Q Consensus 195 ~~g~~~~~~~~P~~~~l~e~~~--~-~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii 271 (713)
+||.++.+++|||++++...+. + +||||||+++||||||||+.... ...+.|.+|..+..... ......|.+++
T Consensus 1 ~gG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~-~~~~~v~~g~~~~~~~~--~~~~~~v~~i~ 77 (228)
T 3h7o_A 1 KGGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQK-PETIVIQYESTNLWEDP--GKSDPYVSHVY 77 (228)
T ss_dssp CCCEECCGGGSTTEEEEEECGGGCCEEEEEEESSSSEEEECHHHHTTSC-GGGCEEEESCSBTTTBC--CEEECCEEEEE
T ss_pred CCCccCCcCCCCeEEEEeecCCCCceEeeeEEeeCCEEEEcHHhcccCC-CCcEEEEecccccccCC--CceeeeEEEEE
Confidence 4677888999999999975443 4 99999999999999999997533 34678888988765432 23667889999
Q ss_pred eCCCCCcCCCCCCccceEEEecCCCCCCCC-CcccccCCCCCC-ccCCCceEEEeeccccCCCCcchhcccccccccChh
Q psy6523 272 THPKYNAQGAKSHDHDIALLKLDTPLEFKP-TVSPVCLPQLGE-KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQ 349 (713)
Q Consensus 272 ~h~~~~~~~~~~~~~diall~L~~p~~~~~-~i~~icl~~~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 349 (713)
.| .|+. ....+|||||+|.+|+.++. .++|+|||.... ...+..+.++|||.+...+..+..|+++.+++++..
T Consensus 78 ~h-~y~~---~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~ 153 (228)
T 3h7o_A 78 LS-FYRQ---ETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLD 153 (228)
T ss_dssp ES-SCBT---TTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHH
T ss_pred cc-ccCC---CCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHH
Confidence 99 8976 46689999999999999999 999999998765 346778999999999888888899999999999999
Q ss_pred hhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 350 ECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 350 ~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.|+..... ..++..|+||+... .+.|++
T Consensus 154 ~C~~~~~~-~~~~~~~~Ca~~~~--~~~C~G 181 (228)
T 3h7o_A 154 ECRTKYGP-IFLSLQVFCAQKVG--VSLESG 181 (228)
T ss_dssp HHHHHHTT-SCCCSSEEEEECTT--CCCCGG
T ss_pred HHHHHhcC-ccCCceEEecCCCC--CcCCCC
Confidence 99875332 34789999999775 788885
No 117
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Probab=99.85 E-value=1.9e-21 Score=228.25 Aligned_cols=187 Identities=35% Similarity=0.692 Sum_probs=156.6
Q ss_pred CCCCCCcc-----cccccccccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCc
Q psy6523 183 EGCGVPNR-----MDRIVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRAT 256 (713)
Q Consensus 183 ~~~~~~~~-----~~rI~~g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~ 256 (713)
..||.+.. ..||+||..+.+++|||+++|.. .+.++||||||+++||||||||+........+.|++|.++...
T Consensus 546 ~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~ 625 (791)
T 4dur_A 546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVN 625 (791)
T ss_dssp CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSS
T ss_pred cCcCCcccccccCCCceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccC
Confidence 35777432 36999999999999999999974 3679999999999999999999987665677899999987554
Q ss_pred ccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCcc-CCCceEEEeeccccCCCCcc
Q psy6523 257 VYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIA 335 (713)
Q Consensus 257 ~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~~~ 335 (713)
. +...+...|.+++.||. .+|||||+|..|+.++..++|||||.....+ .+..+.++|||.+.. ...+
T Consensus 626 ~-~~~~q~~~V~~i~~hp~---------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~-~~~s 694 (791)
T 4dur_A 626 L-EPHVQEIEVSRLFLEPT---------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGA 694 (791)
T ss_dssp C-CTTCEEEEEEEEEECTT---------CCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC----CCT
T ss_pred C-CCccEEEEEEEEECCCC---------CCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCC-CCCC
Confidence 3 44566788999999985 4699999999999999999999999876554 467799999998864 3457
Q ss_pred hhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 336 SDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 336 ~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..|+++.+++++...|.....+...++.+|+|||...++.++|++
T Consensus 695 ~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~G 739 (791)
T 4dur_A 695 GLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 739 (791)
T ss_dssp TBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCS
T ss_pred CeeEEEEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCC
Confidence 889999999999999988655556789999999999999999997
No 118
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.84 E-value=9e-22 Score=224.97 Aligned_cols=189 Identities=33% Similarity=0.580 Sum_probs=113.7
Q ss_pred CCCCCCc----ccccccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCccc
Q psy6523 183 EGCGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVY 258 (713)
Q Consensus 183 ~~~~~~~----~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~ 258 (713)
..||.+. +..||+||..+.+++|||+++|...+.++||||||+++||||||||+.... ...+.|++|.++.....
T Consensus 307 ~~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~-~~~~~V~~G~~~~~~~~ 385 (565)
T 2xrc_A 307 LSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASK-THRYQIWTTVVDWIHPD 385 (565)
T ss_dssp CCCCC--------------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTCS-SCCEEEEC---------
T ss_pred cccCCCCCcccCCCceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccCC-CcceEEEEEEeeccCCC
Confidence 3588754 357999999999999999999987778999999999999999999997643 34567888887754432
Q ss_pred ccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCC----CcccccCCCCCCcc-CCCceEEEeeccccCCCC
Q psy6523 259 ETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKP----TVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQ 333 (713)
Q Consensus 259 d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~----~i~~icl~~~~~~~-~~~~~~v~GwG~~~~~~~ 333 (713)
......+.|.+++.||+|+.. .+++|||||+|.+|+.++. .++|||||.....+ .+..+.++|||.+.. +.
T Consensus 386 ~~~~~~~~V~~ii~Hp~Y~~~---~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~-~~ 461 (565)
T 2xrc_A 386 LKRIVIEYVDRIIFHENYNAG---TYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKD-NE 461 (565)
T ss_dssp ----CEEEEEEEEECTTCCTT---TCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC---------
T ss_pred CCccEEEEEEEEEeCCCCCCC---cccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCC-CC
Confidence 234456789999999999863 5789999999999998764 78999999765543 577899999999876 34
Q ss_pred cchhcccccccccChhhhhcCCCcccccc-CcccccCCCCCCCCCccc
Q psy6523 334 IASDLRATQVPVMSNQECRQFPGFEAKLT-GNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 334 ~~~~L~~~~~~~~~~~~c~~~~~~~~~it-~~~~cAG~~~~~~d~c~~ 380 (713)
.+..|+++.+++++. |.... ...++ ..|+|||...++.++|++
T Consensus 462 ~~~~L~~~~v~i~~~--C~~~~--~~~~~~~~~iCAg~~~g~~d~C~G 505 (565)
T 2xrc_A 462 RVFSLQWGEVKLISN--CSKFY--GNRFYEKEMECAGTYDGSIDACKG 505 (565)
T ss_dssp -----CEEEEEECSC--THHHH--TTSCCTTTEEEEEEC---------
T ss_pred ccceeeEEeeeehHH--hHHhh--ccCcCCCceEEeCCCCCCCccCCC
Confidence 678899999999874 87642 22344 449999999888999987
No 119
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.84 E-value=6.1e-22 Score=224.56 Aligned_cols=225 Identities=19% Similarity=0.330 Sum_probs=156.4
Q ss_pred hHHHHHHhhccCc--eeEEeecccceeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhccCceeeee
Q psy6523 144 TLCARAVANRTDA--CFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGG 221 (713)
Q Consensus 144 T~la~alA~e~~~--~~~~V~~~~i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e~~~~~cgg 221 (713)
....+.||...+- +++.+...+-+.....+-.....+....||.. .++|..+.+++|||+++|...+.++|||
T Consensus 177 ~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~CG~~-----~~~g~~a~~~~~Pw~v~l~~~~~~~CgG 251 (509)
T 2odp_A 177 WRELNELGSKKDGERHAFILQDTKALHQVFEHMLDVSKLTDTICGVG-----NMSANASDQERTPWHVTIKPKSQETCRG 251 (509)
T ss_dssp HHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEECTTCCSCCSSCC-----CCCTTSCHHHHCTTEEEEEC----CEEE
T ss_pred HHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhcccccCCcccCCc-----CCCCCccccCCCCcEEEEEeCCCcEEEE
Confidence 4567888888764 47777765554444333222233344568875 3567888899999999998777899999
Q ss_pred eeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCC------CCCccceEEEecCC
Q psy6523 222 TLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGA------KSHDHDIALLKLDT 295 (713)
Q Consensus 222 slI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~------~~~~~diall~L~~ 295 (713)
|||+++||||||||+........+.|++|.++.. ....+.|.+++.||+|+.... ..+++|||||+|.+
T Consensus 252 sLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~-----~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~ 326 (509)
T 2odp_A 252 ALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQ-----WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQ 326 (509)
T ss_dssp EECSSSEEEECGGGC--------CEEEECCTTCT-----TCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESS
T ss_pred EEEcCCEEEEcHHHcCCCCCcceEEEEeCCcccC-----CCceeeeEEEEECCCCccccccccccccccCCCeEEEEECC
Confidence 9999999999999997654445678999988742 235678999999999987532 35789999999999
Q ss_pred CCCCCCCcccccCCCCCC------ccCCCceEEEeeccccCCCCcch-----hcccccccc---cChhhhhcCC-----C
Q psy6523 296 PLEFKPTVSPVCLPQLGE------KFTQRTGTVVGWGRVEESGQIAS-----DLRATQVPV---MSNQECRQFP-----G 356 (713)
Q Consensus 296 p~~~~~~i~~icl~~~~~------~~~~~~~~v~GwG~~~~~~~~~~-----~L~~~~~~~---~~~~~c~~~~-----~ 356 (713)
|+.++.+++|||||.... ...+..|.+.|||..... ..+. ..+...+++ ++...|.+.. .
T Consensus 327 ~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 405 (509)
T 2odp_A 327 KVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQ-SVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTM 405 (509)
T ss_dssp CCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSS-EEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTT
T ss_pred cccCCCCcccccCCCCcccchhhccCCCCccccccccccccc-cceeeeecccCceeeEEEecCccHHHHHHHhhccccc
Confidence 999999999999997532 245677888999976542 2221 112334444 4689998631 1
Q ss_pred c------cccccCcccccCCCCCCCCCccc
Q psy6523 357 F------EAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 357 ~------~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
| ...++.+|+|||. .++.++|++
T Consensus 406 ~~~~~~~~~~~~~~~iCag~-~~~~~~C~G 434 (509)
T 2odp_A 406 FPNLTDVREVVTDQFLCSGT-QEDESPCKG 434 (509)
T ss_dssp CTTCSSGGGTSCTTEEEECC-TTCCCCCGG
T ss_pred ccccccccccccCCEEEeCC-CCCCcccCC
Confidence 2 2358999999997 578899997
No 120
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=203.04 Aligned_cols=162 Identities=25% Similarity=0.535 Sum_probs=137.0
Q ss_pred cccccCcCCchhhhhhc-cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCC
Q psy6523 197 GWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPK 275 (713)
Q Consensus 197 g~~~~~~~~P~~~~l~e-~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~ 275 (713)
|..+...+|||+++|.. .+.++||||||+++||||||||+... ..+.|++|..+.. ...+.+.|.+++.||+
T Consensus 97 G~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~---~~~~V~~G~~~~~----~~~~~~~v~~i~~Hp~ 169 (317)
T 3h5c_B 97 KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLH---RNITVKTYFNRTS----QDPLMIKITHVHVHMR 169 (317)
T ss_dssp CSSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHSC---SSCEEEECTTSCT----TSCEEEEEEEEEECTT
T ss_pred cccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCcC---CceEEEEeeecCC----CCcEEEEeeEEEECCC
Confidence 77788999999999985 56789999999999999999999653 3578889987643 3456789999999999
Q ss_pred CCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCC----CccCCCceEEEeeccccCCCCcchhcccccccccChhhh
Q psy6523 276 YNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG----EKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQEC 351 (713)
Q Consensus 276 ~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~----~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c 351 (713)
|+.. .+++|||||+|.+|+.++..++|||||... ....+..+.++|||. ..+..+..|+++.+++++..+|
T Consensus 170 y~~~---~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~~C 244 (317)
T 3h5c_B 170 YDAD---AGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEEC 244 (317)
T ss_dssp CBTT---TTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEEECHHHH
T ss_pred CCCC---CCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEEECHHHH
Confidence 9863 568999999999999999999999999764 345678899999999 4566788999999999999999
Q ss_pred hcCCCccccccCcccccCCCC
Q psy6523 352 RQFPGFEAKLTGNMMCAGYVE 372 (713)
Q Consensus 352 ~~~~~~~~~it~~~~cAG~~~ 372 (713)
.+.. ...++.+|+||+...
T Consensus 245 ~~~~--~~~~~~~~~Ca~~~~ 263 (317)
T 3h5c_B 245 GQVL--NVTVTTRTYCERSSV 263 (317)
T ss_dssp HHHH--TCCCCTTEEEEECSC
T ss_pred hhhh--cCcCCCceeECCCCC
Confidence 8753 346889999998654
No 121
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=8.1e-23 Score=228.40 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=76.8
Q ss_pred ccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC--ceeEEeecccceeeeecc
Q psy6523 96 ARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD--ACFIRVIGSELVQKYVGE 173 (713)
Q Consensus 96 ~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~--~~~~~V~~~~i~s~~~Ge 173 (713)
..|++++|.++ +++.+.+++.. ...|..+++|+|||||||||||++|+++|++++ .+|+.++++++.++|.|+
T Consensus 34 ~~~~~iiG~~~-~~~~l~~~~~~----~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~ 108 (456)
T 2c9o_A 34 QAASGLVGQEN-AREACGVIVEL----IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKK 108 (456)
T ss_dssp SEETTEESCHH-HHHHHHHHHHH----HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCH
T ss_pred hchhhccCHHH-HHHHHHHHHHH----HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhh
Confidence 35677776665 44444443321 123567889999999999999999999999999 999999999999999998
Q ss_pred eeecccCCCCCCCCCccccccccccccc---CcCCchhhhhhccCcee
Q psy6523 174 RVLMEGCNNEGCGVPNRMDRIVGGWTTE---VNEYPWVVALEQAGKFF 218 (713)
Q Consensus 174 s~~~~~~~~~~~~~~~~~~rI~~g~~~~---~~~~P~~~~l~e~~~~~ 218 (713)
++ ++...|+.+ ....|+++++||.+.+.
T Consensus 109 ~~-----------------~~~~~f~~a~~~~~~~~~il~iDEid~l~ 139 (456)
T 2c9o_A 109 TE-----------------VLMENFRRAIGLRIKETKEVYEGEVTELT 139 (456)
T ss_dssp HH-----------------HHHHHHHHTEEEEEEEEEEEEEEEEEEEE
T ss_pred hH-----------------HHHHHHHHHHhhhhcCCcEEEEechhhcc
Confidence 65 255666666 55678899999886643
No 122
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.81 E-value=6.1e-21 Score=215.61 Aligned_cols=222 Identities=23% Similarity=0.406 Sum_probs=161.4
Q ss_pred hHHHHHHhhccCc--eeEEeecccceeeeecceeecccCCCCCCCCCcccccccccccccCcCCchhhhhhc----cCce
Q psy6523 144 TLCARAVANRTDA--CFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQ----AGKF 217 (713)
Q Consensus 144 T~la~alA~e~~~--~~~~V~~~~i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~~P~~~~l~e----~~~~ 217 (713)
....+.||...+- .++.+...+-+.....+- +-.......||..... +..+.+.+|||+++|.. .+.+
T Consensus 169 ~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~-i~~~~~~~~CG~~~~~-----~~~~~~~~~Pw~v~l~~~~~~~~~~ 242 (497)
T 1rrk_A 169 QVNINALASKKDNEQHVCKVKDMECLEDVFYQM-IDESQSLSLCGMVWEH-----RKGTDYHKQPWQAKISVIRPSKGHE 242 (497)
T ss_dssp HHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHH-SCGGGGTTCTTCCCCC-----TTCCHHHHSTTEEEEEECC--CCCE
T ss_pred HHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhc-ccCCCCcCCCCCCCCC-----CCCCCccccCcEEEEEEEcCCCCCc
Confidence 4677999998876 888887554443332221 1111122457774321 23456789999999973 3468
Q ss_pred eeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCC------CCCccceEEE
Q psy6523 218 FCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGA------KSHDHDIALL 291 (713)
Q Consensus 218 ~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~------~~~~~diall 291 (713)
+||||||+++||||||||+........+.|.+|.+. ..+.|.+++.||+|+.... ..+.+|||||
T Consensus 243 ~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~---------~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl 313 (497)
T 1rrk_A 243 SCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEK---------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALI 313 (497)
T ss_dssp EEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTCS---------SCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEE
T ss_pred eeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCcc---------ceeeeEEEEeCCCccccccccccccccCCCcEEEE
Confidence 999999999999999999976544456778888642 3468999999999987532 3568999999
Q ss_pred ecCCCCCCCCCcccccCCCCC------CccCCCceEEEeeccccCCC-------CcchhcccccccccC---hhhhhcCC
Q psy6523 292 KLDTPLEFKPTVSPVCLPQLG------EKFTQRTGTVVGWGRVEESG-------QIASDLRATQVPVMS---NQECRQFP 355 (713)
Q Consensus 292 ~L~~p~~~~~~i~~icl~~~~------~~~~~~~~~v~GwG~~~~~~-------~~~~~L~~~~~~~~~---~~~c~~~~ 355 (713)
+|.+|+.++.+++|||||... ....+..|.+.|||...... ..+..|+++.+++++ ...|.+..
T Consensus 314 ~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~ 393 (497)
T 1rrk_A 314 KLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDA 393 (497)
T ss_dssp EESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGG
T ss_pred EECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhh
Confidence 999999999999999999754 23456778889999765421 235689999999998 78997531
Q ss_pred ----Cc------cccccCcccccCCCCC--CCCCccc
Q psy6523 356 ----GF------EAKLTGNMMCAGYVEG--GKDSCQV 380 (713)
Q Consensus 356 ----~~------~~~it~~~~cAG~~~~--~~d~c~~ 380 (713)
+| ...++.+|+|||...+ +.++|++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~G 430 (497)
T 1rrk_A 394 QYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 430 (497)
T ss_dssp GGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGG
T ss_pred hhcccccccccccccCCCCeEEeCCCCCCCCCcCCCC
Confidence 22 2357899999998753 6799997
No 123
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.78 E-value=2.2e-19 Score=212.82 Aligned_cols=235 Identities=23% Similarity=0.395 Sum_probs=164.1
Q ss_pred CCcEEeeCCCCCch---hHHHHHHhhccCc--eeEEeecccceeeeecceeecccCCCCCCCCCcccccccccccccCcC
Q psy6523 130 PKGVLLFGPPGTGK---TLCARAVANRTDA--CFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNE 204 (713)
Q Consensus 130 p~gvLL~GPpGtGK---T~la~alA~e~~~--~~~~V~~~~i~s~~~Ges~~~~~~~~~~~~~~~~~~rI~~g~~~~~~~ 204 (713)
..||-+|. -|.|. ....+.||...+- +++.+...+-+.....+ .....|....||.. ...+..+.+++
T Consensus 395 ~~gi~i~~-igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~-l~~~~~~~~~CG~~-----~~~~~~~~~~~ 467 (741)
T 3hrz_D 395 EDYLDVYV-FGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ-MIDESQSLSLCGMV-----WEHRKGTDYHK 467 (741)
T ss_dssp GGGEEEEE-EECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHH-HHHHHSCTTSTTCC-----CCC---CCTTT
T ss_pred ccCeeEEE-EeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHH-hhcccccccccccc-----cccCCcccccC
Confidence 45666652 33443 5678899998876 57877755444333222 12234555667764 33467778899
Q ss_pred Cchhhhhhc----cCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCC
Q psy6523 205 YPWVVALEQ----AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 280 (713)
Q Consensus 205 ~P~~~~l~e----~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~ 280 (713)
|||++.+.- .+.++||||||+++||||||||+........+.|++|..+ ..+.|.+++.||+|+...
T Consensus 468 ~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~---------~~~~v~~i~~Hp~y~~~~ 538 (741)
T 3hrz_D 468 QPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEK---------RDLEIEVVLFHPNYNING 538 (741)
T ss_dssp CTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-----CCEEEEETTCS---------CCEEEEEEEECTTCCTTT
T ss_pred cCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCCc---------eEEEEEEEEECCCCCccc
Confidence 999655442 3568999999999999999999987655667888888654 456899999999999754
Q ss_pred C------CCCccceEEEecCCCCCCCCCcccccCCCCCC------ccCCCceEEEeeccccCCC-------Ccchhcccc
Q psy6523 281 A------KSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE------KFTQRTGTVVGWGRVEESG-------QIASDLRAT 341 (713)
Q Consensus 281 ~------~~~~~diall~L~~p~~~~~~i~~icl~~~~~------~~~~~~~~v~GwG~~~~~~-------~~~~~L~~~ 341 (713)
. ..+++|||||+|.+|+.+++.++|||||.... ...+..|.+.|||.+.... .....|++.
T Consensus 539 ~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~ 618 (741)
T 3hrz_D 539 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK 618 (741)
T ss_dssp TGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEE
T ss_pred ccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceeccccccccccc
Confidence 2 34789999999999999999999999996432 3456788899999877643 235678999
Q ss_pred cccccC---hhhhhcCC----Cc------cccccCcccccCCCCC--CCCCccc
Q psy6523 342 QVPVMS---NQECRQFP----GF------EAKLTGNMMCAGYVEG--GKDSCQV 380 (713)
Q Consensus 342 ~~~~~~---~~~c~~~~----~~------~~~it~~~~cAG~~~~--~~d~c~~ 380 (713)
.+++.+ ...|.... .| ...++.+|+|||...+ +.++|++
T Consensus 619 ~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~G 672 (741)
T 3hrz_D 619 EVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 672 (741)
T ss_dssp EEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGG
T ss_pred eeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcC
Confidence 999998 88898622 12 2468999999998864 7889997
No 124
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.73 E-value=1.2e-18 Score=191.01 Aligned_cols=61 Identities=8% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcccCCCCCCCeEEEEe-cCCCCCccccccCCCCCCeEEEecCCCHH-HHHHHHHH
Q psy6523 490 LREVVETPLLHLDGFDPRGNIKVLMA-TNRPDTLDPALMRPGRLDRKVEFGLPDLE-GRTHIFKI 552 (713)
Q Consensus 490 ~~~~v~~lL~~~d~~~~~~~v~vi~a-TN~p~~lD~Al~RpGRfd~~i~i~~P~~~-~R~~il~~ 552 (713)
.++++++||++|||+.+...| +++ ||+|+.|||||+||||||++|+|++|+.. .|.+||..
T Consensus 128 e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 128 EERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 359999999999999776655 455 99999999999999999999999999997 88888743
No 125
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.63 E-value=6.1e-17 Score=171.08 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=76.6
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccH
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRF 565 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~ 565 (713)
.+++.|+..|+.. ..++++|++||.++ .++|+|++ ||+..|+|+.|+.+++.+|++.++.+.... ++-.+
T Consensus 154 ~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~ 229 (309)
T 3syl_A 154 EAIEILLQVMENN--RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAE 229 (309)
T ss_dssp HHHHHHHHHHHHC--TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHH
T ss_pred HHHHHHHHHHhcC--CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5667777777743 45688999998764 36899999 999999999999999999999999876654 33334
Q ss_pred HHHHHh-------CCCCCHHHHHHHHHHHHHHHHHH
Q psy6523 566 ELLARL-------CPNSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 566 ~~la~~-------t~g~sgadi~~l~~~A~~~a~~~ 594 (713)
..++.. ...-+++++.++++.|.+.+..+
T Consensus 230 ~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 230 TALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 555554 22334899999999998877765
No 126
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.63 E-value=5.9e-16 Score=167.62 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=80.0
Q ss_pred CCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy6523 517 NRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 595 (713)
Q Consensus 517 N~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~ 595 (713)
|.++.+|++|++ ||.. +.|+.|+.+++.+|++..+...... ++..+..|++.+.|.+++++.++|+.|+..|..++
T Consensus 238 ~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~ 314 (368)
T 3uk6_A 238 QSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK 314 (368)
T ss_dssp EEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 458899999999 9977 8999999999999999988765443 34457889998887899999999999999999888
Q ss_pred hhhcCHHHHHHHHhHh
Q psy6523 596 RKVASEKDFLEAVNKV 611 (713)
Q Consensus 596 ~~~v~~~d~~~a~~~~ 611 (713)
...|+.+++.+++..+
T Consensus 315 ~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp CSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHh
Confidence 8899999999998764
No 127
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.60 E-value=5.7e-16 Score=176.27 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=70.5
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhc-----cCCCc------ccccHHHHHHhCCCC-
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHAR-----SMSVE------RDIRFELLARLCPNS- 575 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~-----~~~~~------~~~~~~~la~~t~g~- 575 (713)
.++++|+|||+++.|||+|++ ||+ .|+|+.|+.++|.+|++.++. ...+. ++-.+..++....+-
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 468999999999999999999 995 799999999999999998872 22221 122344445433332
Q ss_pred CH----HHHHHHHHHHHHHHHHHH--hhhcCHHHHHHHHhHh
Q psy6523 576 TG----AEIRSVCTEAGMFAIRAR--RKVASEKDFLEAVNKV 611 (713)
Q Consensus 576 sg----adi~~l~~~A~~~a~~~~--~~~v~~~d~~~a~~~~ 611 (713)
.. +.|..+|+.|+..+++.. ...|+.+++.+++...
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 22 556666666666555432 2368888998888654
No 128
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Probab=99.59 E-value=1.1e-16 Score=160.43 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=113.8
Q ss_pred ccccccccccccCcCCchh--hhhhccCceeeeeeeechhhHHhhcccccCCCCC---CceEEEEccccCCcccccceEE
Q psy6523 190 RMDRIVGGWTTEVNEYPWV--VALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ---KDLIVVISEHNRATVYETQIET 264 (713)
Q Consensus 190 ~~~rI~~g~~~~~~~~P~~--~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~---~~~vv~ig~~~~~~~~d~~~~~ 264 (713)
...||.+|. ++||. +++. .+.++|||+||+++||||||||+...... ....|++|..+..... ..
T Consensus 7 ~~~rI~~g~-----~~P~~~~~~~~-~~~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~----~~ 76 (215)
T 1p3c_A 7 GRTKVANTR-----VAPYNSIAYIT-FGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVN----GS 76 (215)
T ss_dssp CCEECSCTT-----STTGGGEEEEE-CSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCTT----CC
T ss_pred CCEEecCCC-----cCCCeEEEEEE-cCCceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCCCC----Ce
Confidence 346787775 47883 3333 56789999999999999999999764321 1237889988765432 25
Q ss_pred EEeeEEeeCCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhccccccc
Q psy6523 265 RRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVP 344 (713)
Q Consensus 265 ~~v~~ii~h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~ 344 (713)
+.|.+++.||+|+.. ....+|||||+|.+| ++..++|+|||.... ..+..+.+.|||.+.. +..+..|+.+.++
T Consensus 77 ~~v~~i~~hp~y~~~--~~~~~DiAll~L~~~--~~~~v~pi~l~~~~~-~~g~~~~~~Gwg~~~~-~~~~~~l~~~~~~ 150 (215)
T 1p3c_A 77 ANMTEFYVPSGYINT--GASQYDFAVIKTDTN--IGNTVGYRSIRQVTN-LTGTTIKISGYPGDKM-RSTGKVSQWEMSG 150 (215)
T ss_dssp EEEEEEECCHHHHHH--CCGGGCCEEEEESSC--HHHHHCCCCBCCCSC-CTTCEEEEEECCHHHH-HHHSSCCCEEEEE
T ss_pred EEEEEEEeCCccccC--CCcccCEEEEEECCC--CcccceeeecCCCcc-cCCCeEEEecCCCCCc-ccccceechhccC
Confidence 789999999999532 356799999999996 678899999997653 5678899999997654 2345678899999
Q ss_pred ccChhhhhcC
Q psy6523 345 VMSNQECRQF 354 (713)
Q Consensus 345 ~~~~~~c~~~ 354 (713)
+++...|...
T Consensus 151 ~~~~~~c~~~ 160 (215)
T 1p3c_A 151 SVTREDTNLA 160 (215)
T ss_dssp ECCEECSSEE
T ss_pred ccCcccchhe
Confidence 9999999864
No 129
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.56 E-value=4.2e-14 Score=151.28 Aligned_cols=100 Identities=17% Similarity=0.128 Sum_probs=85.1
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
++++|+|||++..++++|++ ||+..+.|+.|+.+++.+|++.++...... ++..++.|++.+.| +..++.++++.|
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 58999999999999999999 999999999999999999999998877654 34456778886655 568999999999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 588 GMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 588 ~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
...+.......++.+++..++...
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHHh
Confidence 877776667789999999888764
No 130
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.55 E-value=7.8e-15 Score=122.19 Aligned_cols=76 Identities=45% Similarity=0.733 Sum_probs=71.9
Q ss_pred cCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 539 GLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 539 ~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
|+||.++|.+||+.+++++++..++|+..||+.|+|||||||.++|++|++.|++++...|+.+||+.|++++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999987543
No 131
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=9.5e-15 Score=123.66 Aligned_cols=77 Identities=44% Similarity=0.733 Sum_probs=72.6
Q ss_pred ecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 538 FGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 538 i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
-.+||.++|.+||+.+++++++..++|++.||+.|+|||||||++||++|++.|+++....|+.+||+.|++++.+.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 36899999999999999999998899999999999999999999999999999999988899999999999988654
No 132
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=2.3e-15 Score=168.47 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=73.9
Q ss_pred HhhhhcccCCCCCCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC----Cc-cccc
Q psy6523 495 ETPLLHLDGFDPRGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS----VE-RDIR 564 (713)
Q Consensus 495 ~~lL~~~d~~~~~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~----~~-~~~~ 564 (713)
+.|+..|+ .+.+.+|+|||.++ .+|++|+| ||+. |.|+.|+.+++.+||+.++.++. +. .+..
T Consensus 281 ~~L~~~L~----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~a 353 (468)
T 3pxg_A 281 NILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDA 353 (468)
T ss_dssp ---CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHH
T ss_pred HHHHHhhc----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 34444444 34689999999998 79999999 9985 99999999999999999887642 22 3344
Q ss_pred HHHHHHhCCCCC-----HHHHHHHHHHHHHHHHHHHh-hhcCHHHHHHHHhHh
Q psy6523 565 FELLARLCPNST-----GAEIRSVCTEAGMFAIRARR-KVASEKDFLEAVNKV 611 (713)
Q Consensus 565 ~~~la~~t~g~s-----gadi~~l~~~A~~~a~~~~~-~~v~~~d~~~a~~~~ 611 (713)
+..++..+.+|. +.....++.+|+..+..+.. .....++++..+++.
T Consensus 354 l~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 354 IEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 666666655554 45777888888765544332 223334455554443
No 133
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=2.9e-14 Score=169.07 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred HhhhhcccCCCCCCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-----cccc
Q psy6523 495 ETPLLHLDGFDPRGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-----RDIR 564 (713)
Q Consensus 495 ~~lL~~~d~~~~~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-----~~~~ 564 (713)
+.|+..|+ .+.+.+|+|||..+ .+||||+| || ..|+|+.|+.+++.+||+.+...+... .+..
T Consensus 281 ~~L~~~l~----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~a 353 (758)
T 3pxi_A 281 NILKPSLA----RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDA 353 (758)
T ss_dssp ---CCCTT----SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHH
T ss_pred HHHHHHHh----cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 34444444 45689999999999 79999999 99 569999999999999999887764321 2233
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHH
Q psy6523 565 FELLARL-----CPNSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 565 ~~~la~~-----t~g~sgadi~~l~~~A~~~a~~~ 594 (713)
+..++.. ++++.+.....++.+|+..+..+
T Consensus 354 l~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 354 IEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 4445443 44677888888898887666544
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.51 E-value=8.7e-15 Score=151.85 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHHHhhhhcccCCC-CCCCeEEEEecCCCCCccc-cccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHH
Q psy6523 492 EVVETPLLHLDGFD-PRGNIKVLMATNRPDTLDP-ALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLA 569 (713)
Q Consensus 492 ~~v~~lL~~~d~~~-~~~~v~vi~aTN~p~~lD~-Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la 569 (713)
.+++.|+..+++.. ...+++||+|||+++.+|+ .+++ ||+..|++|.++. |.+|.+.+.....+ .+.++..++
T Consensus 149 ~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~ 223 (272)
T 1d2n_A 149 LVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIA 223 (272)
T ss_dssp HHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHH
Confidence 45566666677664 3346889999999999999 5666 9999988765543 44555544443333 355688899
Q ss_pred HhCCCC----CHHHHHHHHHHHHH
Q psy6523 570 RLCPNS----TGAEIRSVCTEAGM 589 (713)
Q Consensus 570 ~~t~g~----sgadi~~l~~~A~~ 589 (713)
+.+.|| +-.++.+++..|..
T Consensus 224 ~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 224 QQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHTTSEEEECHHHHHHHHHHHTT
T ss_pred HHhcCCCccccHHHHHHHHHHHhh
Confidence 999998 66777777776643
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.50 E-value=4.5e-14 Score=148.66 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=79.4
Q ss_pred HHHhhhhcccCCC--------CCCCeEEEEe----cCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHH----hh--
Q psy6523 493 VVETPLLHLDGFD--------PRGNIKVLMA----TNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI----HA-- 554 (713)
Q Consensus 493 ~v~~lL~~~d~~~--------~~~~v~vi~a----TN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~----~~-- 554 (713)
+.+.||..|++.. ...++++|++ ++.+..++|+|++ ||+..|+|+.|+.+++.+|++. ++
T Consensus 144 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~ 221 (310)
T 1ofh_A 144 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQ 221 (310)
T ss_dssp HHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHH
T ss_pred HHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHH
Confidence 4455666666531 2346788888 6789999999999 9999999999999999999983 21
Q ss_pred -----ccCC--Cc-ccccHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHhh------hcCHHHHHHHHhH
Q psy6523 555 -----RSMS--VE-RDIRFELLARLC-------PNSTGAEIRSVCTEAGMFAIRARRK------VASEKDFLEAVNK 610 (713)
Q Consensus 555 -----~~~~--~~-~~~~~~~la~~t-------~g~sgadi~~l~~~A~~~a~~~~~~------~v~~~d~~~a~~~ 610 (713)
.... +. ++-.++.|++.+ ++.+.+++.++++.+...+..+... .|+.+++.+++..
T Consensus 222 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 222 YKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 1112 11 233456666665 3578889999998887655533221 3777777777654
No 136
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.49 E-value=1.4e-13 Score=146.18 Aligned_cols=100 Identities=18% Similarity=0.163 Sum_probs=83.3
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
++.+|++||++..++++|++ ||+..+.++.|+.+++.++++.++...... ++..+..|+..+.|. ..++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 57899999999999999999 999999999999999999999998866544 344577888888764 58899999988
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 588 GMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 588 ~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
...+.......++.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 777665556678999988887654
No 137
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.46 E-value=7.4e-14 Score=118.92 Aligned_cols=76 Identities=76% Similarity=1.161 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccc
Q psy6523 542 DLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKI 617 (713)
Q Consensus 542 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~ 617 (713)
|.++|.+||+.+++++++..++|+..||+.|+|||||||.++|++|++.|+++....|+.+||+.|++++..+...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999998776543
No 138
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}
Probab=99.46 E-value=1.3e-14 Score=145.55 Aligned_cols=120 Identities=14% Similarity=0.250 Sum_probs=91.9
Q ss_pred CcCCchhhhhhc---cCceeeeeeeec---hhhHHhhcccccCCCC---CCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 202 VNEYPWVVALEQ---AGKFFCGGTLIS---DRYVLTAAHCVRSSKR---QKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 202 ~~~~P~~~~l~e---~~~~~cggslI~---~r~vltaa~c~~~~~~---~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
+..|||+..|.. ...++||||||+ ++||||||||+..... ...+.++.|.++.... .....|.+++.
T Consensus 3 ~~~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~----~~~~~v~~~~~ 78 (218)
T 3cp7_A 3 PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESE----HGVWAAEELVT 78 (218)
T ss_dssp CTTCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCCT----TCCEEEEEEEE
T ss_pred CCCCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCCC----ccEEEEEEEEE
Confidence 567999987763 235899999999 9999999999965321 1356677887664321 12467899999
Q ss_pred CCCCCcCCCCCCccceEEEecCCC--CCCCCCcc-cccCCCCCCccCCCceEEEeecccc
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTP--LEFKPTVS-PVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p--~~~~~~i~-~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
||+|+.. ...++|||||+|.+| +.+++.++ +++|+... ..+..+.+.|||.+.
T Consensus 79 hp~y~~~--~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~--~~g~~~~v~GwG~~~ 134 (218)
T 3cp7_A 79 SAEWANR--GDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ--PRGQYYSAYGYPAAA 134 (218)
T ss_dssp CHHHHHH--CCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC--CSSCEEEEEECCCST
T ss_pred CcccccC--CCCcCCEEEEEEeCCCCcChhHhcCcccceeecC--CCCCEEEEEeCCCCC
Confidence 9999743 246799999999999 78888899 99998532 467789999999875
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.45 E-value=7.9e-13 Score=141.05 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred CCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCC----------------------c
Q psy6523 508 GNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSV----------------------E 560 (713)
Q Consensus 508 ~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~----------------------~ 560 (713)
.+++||+|+|..+ .+|++|++ ||+..+++++|+.++|.+||+..+..... .
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 226 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVT 226 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCB
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCC
Confidence 3567888888443 39999999 99999999999999999999988764321 0
Q ss_pred -ccccHHHHHHhC-------------------CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 561 -RDIRFELLARLC-------------------PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 561 -~~~~~~~la~~t-------------------~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
++.-++.+++.. .|.|.+.+..+++.|...|..+++..++.+|+.+++..+..
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 111133333321 26699999999999988888888888999999999987654
No 140
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.42 E-value=2e-13 Score=162.08 Aligned_cols=81 Identities=23% Similarity=0.273 Sum_probs=58.2
Q ss_pred CCCeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC------CCcccccHHHHHHhCCC-
Q psy6523 507 RGNIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM------SVERDIRFELLARLCPN- 574 (713)
Q Consensus 507 ~~~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~------~~~~~~~~~~la~~t~g- 574 (713)
.+.+.+|++||.++ .+|++|.| ||+ .+.|+.|+.++|.+||+.+...+ .+. +-.+..++..+.|
T Consensus 313 ~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 313 SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKY 388 (758)
T ss_dssp SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhh
Confidence 35678999999754 68999999 998 69999999999999999877542 222 2234555555443
Q ss_pred ----CCHHHHHHHHHHHHHHH
Q psy6523 575 ----STGAEIRSVCTEAGMFA 591 (713)
Q Consensus 575 ----~sgadi~~l~~~A~~~a 591 (713)
+.+..+..++.+|+..+
T Consensus 389 i~~~~lp~~~i~lld~a~~~~ 409 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARA 409 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHH
Confidence 45567777777775443
No 141
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=99.40 E-value=2.3e-13 Score=113.85 Aligned_cols=79 Identities=35% Similarity=0.606 Sum_probs=66.3
Q ss_pred ccccccccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeC
Q psy6523 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTH 273 (713)
Q Consensus 194 I~~g~~~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h 273 (713)
|+||..+.+++|||++++...+.++||||||+++||||||||+.. ...|++|..+..... .....+.|.+++.|
T Consensus 1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~-----~~~v~~G~~~~~~~~-~~~~~~~v~~i~~H 74 (80)
T 2pka_A 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND-----NYEVWLGRHNLFENE-NTAQFFGVTADFPH 74 (80)
T ss_dssp CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS-----CCEEEESCSBTTSCC-TTCEEEEEEEEEEC
T ss_pred CCCCEECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCC-----CcEEEEeeeEcCCCC-CCcEEEEEEEEEEC
Confidence 578889999999999999877789999999999999999999864 356889998765432 23467889999999
Q ss_pred CCCCc
Q psy6523 274 PKYNA 278 (713)
Q Consensus 274 ~~~~~ 278 (713)
|+|+.
T Consensus 75 p~y~~ 79 (80)
T 2pka_A 75 PGFNL 79 (80)
T ss_dssp TTTTT
T ss_pred cCCCC
Confidence 99984
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.38 E-value=7.1e-12 Score=124.28 Aligned_cols=93 Identities=10% Similarity=0.060 Sum_probs=72.4
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
.++.+|++||.++.+++++.+ ||. .++++.|+.++..++++.++...... ++..+..+++.+.| +...+.++++.
T Consensus 131 ~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 467889999999999999999 998 89999999999999999888654433 23456778877765 56666666666
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 587 AGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 587 A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
++..+ ..|+.+++.+++.
T Consensus 207 ~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-----SCBCHHHHHHHHH
T ss_pred HHhcC-----ceecHHHHHHHhc
Confidence 65443 5789999988764
No 143
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.38 E-value=1.5e-13 Score=148.82 Aligned_cols=46 Identities=39% Similarity=0.579 Sum_probs=41.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee-eeecc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGE 173 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s-~~~Ge 173 (713)
.+++++||+||||||||++|+++|..++.+|+.++++++.. .|.|+
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36889999999999999999999999999999999998874 37665
No 144
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.37 E-value=3.8e-13 Score=113.33 Aligned_cols=73 Identities=29% Similarity=0.469 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 542 DLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 542 ~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
|.++|.+||+.+++++++..++|+..||+.|+|||||||.++|++|++.|+++....|+.+||..|++++.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6899999999999999998899999999999999999999999999999999887788888888888877554
No 145
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.3e-12 Score=144.65 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=63.3
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhC-----cccccccCCC---CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQ-----PEKFVNLGIE---PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~-----~~~~~~~gi~---~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
++...+.+|+|++|.+..++ .+.+.+.. +..|...|.. +++++||+||||||||++|+++|++++.+++.+
T Consensus 30 ~ekyrP~~~~dliG~~~~~~-~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVM-KLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHH-HHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCHHHhcCCHHHHH-HHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45556678999888766544 44444443 3455555553 679999999999999999999999999999999
Q ss_pred ecccceeeeecc
Q psy6523 162 IGSELVQKYVGE 173 (713)
Q Consensus 162 ~~~~i~s~~~Ge 173 (713)
++++..+.+..+
T Consensus 109 n~s~~~~~~~~~ 120 (516)
T 1sxj_A 109 NASDVRSKTLLN 120 (516)
T ss_dssp CTTSCCCHHHHH
T ss_pred eCCCcchHHHHH
Confidence 998877765443
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.37 E-value=2.5e-12 Score=129.68 Aligned_cols=95 Identities=9% Similarity=0.018 Sum_probs=73.7
Q ss_pred EEEEecCCCC---CccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHH
Q psy6523 511 KVLMATNRPD---TLDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVC 584 (713)
Q Consensus 511 ~vi~aTN~p~---~lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~ 584 (713)
+|+.+++.++ .+++++.+ ||. ..++++.|+.+++.++++.++....+. ++..++.|++.+.| +.+++.+++
T Consensus 141 ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l 217 (242)
T 3bos_A 141 LIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVL 217 (242)
T ss_dssp EEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred EEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHH
Confidence 4555554554 56788998 886 999999999999999999998755443 34456788888866 889999999
Q ss_pred HHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 585 TEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 585 ~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
+.|...|..++ ..|+.+++.++++
T Consensus 218 ~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 218 DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 99988875543 5699999988764
No 147
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.35 E-value=1e-11 Score=133.11 Aligned_cols=103 Identities=16% Similarity=0.180 Sum_probs=77.7
Q ss_pred CeEEEEecCCCC-CccccccCCCCCCeEEEecCC-CHHHHHHHHHHhh-------------------------------c
Q psy6523 509 NIKVLMATNRPD-TLDPALMRPGRLDRKVEFGLP-DLEGRTHIFKIHA-------------------------------R 555 (713)
Q Consensus 509 ~v~vi~aTN~p~-~lD~Al~RpGRfd~~i~i~~P-~~~~R~~il~~~~-------------------------------~ 555 (713)
++++|+|||..+ .++++|++ ||+..++++.| +.+.|.+|++..+ .
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 264 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP 264 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCC
Confidence 688999999755 89999999 99999999999 6788888887632 1
Q ss_pred cCCCcccccHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhc
Q psy6523 556 SMSVERDIRFELLARLCP---NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARC 614 (713)
Q Consensus 556 ~~~~~~~~~~~~la~~t~---g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~ 614 (713)
...++ +.-+..|++... +-+.+.+.++++.|...|..+++..|+.+|+.+|+..+...
T Consensus 265 ~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 265 KVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp GCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred CCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 22222 222344444433 23779999999999988888777889999999998866443
No 148
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=5.2e-12 Score=136.86 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=88.8
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCC---CCccccccCCCCCCe-EEEecCCCHHHHHHHHHHhhcc----CCCcccc
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRP---DTLDPALMRPGRLDR-KVEFGLPDLEGRTHIFKIHARS----MSVERDI 563 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p---~~lD~Al~RpGRfd~-~i~i~~P~~~~R~~il~~~~~~----~~~~~~~ 563 (713)
.++..++..++......++.+|++||.+ +.+++++.+ ||.. .+.|+.|+.+++.+|++..+.. ..++ +.
T Consensus 150 ~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~ 226 (387)
T 2v1u_A 150 DLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PD 226 (387)
T ss_dssp HHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SS
T ss_pred hHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HH
Confidence 4566666666654324568899999998 789999999 9985 9999999999999999988764 2332 33
Q ss_pred cHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 564 RFELLARLCP---NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 564 ~~~~la~~t~---g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
.+..+++.+. | ....+.++++.|+..|..++...++.+++..|+....
T Consensus 227 ~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 227 VVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 4667777776 5 4678889999998888776778899999999988764
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.34 E-value=1.7e-12 Score=143.85 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=76.8
Q ss_pred hhhhcccCCCCCCCeEEEEec--CCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-------CCc-ccccH
Q psy6523 496 TPLLHLDGFDPRGNIKVLMAT--NRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM-------SVE-RDIRF 565 (713)
Q Consensus 496 ~lL~~~d~~~~~~~v~vi~aT--N~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~-------~~~-~~~~~ 565 (713)
.||..|+. +.+++|++| |....++++|++ |+. .+.++.|+.+++.+|++.++... .+. ++..+
T Consensus 125 ~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al 197 (447)
T 3pvs_A 125 AFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETR 197 (447)
T ss_dssp CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHH
T ss_pred HHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHH
Confidence 34555553 346777776 445689999999 987 67799999999999999998762 121 23346
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHH--HhhhcCHHHHHHHHhHh
Q psy6523 566 ELLARLCPNSTGAEIRSVCTEAGMFAIRA--RRKVASEKDFLEAVNKV 611 (713)
Q Consensus 566 ~~la~~t~g~sgadi~~l~~~A~~~a~~~--~~~~v~~~d~~~a~~~~ 611 (713)
+.|++.+.| +.+++.+++..|+..+... +...|+.+++.+++.+.
T Consensus 198 ~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 198 RAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 778888655 6788888888887665322 23468888888877643
No 150
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.34 E-value=3.6e-12 Score=135.51 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=75.2
Q ss_pred CCeEEEEecCCCC---CccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHH
Q psy6523 508 GNIKVLMATNRPD---TLDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIR 581 (713)
Q Consensus 508 ~~v~vi~aTN~p~---~lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~ 581 (713)
+..+|++++|.|. .++++|++ ||+ ..+.+++ +.++|.+|++.++...++. ++..++.|++.+ -+.+++.
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~ 205 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIE 205 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHH
Confidence 3467777777776 68999999 997 7899999 9999999999998765443 344478899998 5778888
Q ss_pred HHHHHHHHH---HHH-HHhhhc-CHHHHHHHHhHhh
Q psy6523 582 SVCTEAGMF---AIR-ARRKVA-SEKDFLEAVNKVA 612 (713)
Q Consensus 582 ~l~~~A~~~---a~~-~~~~~v-~~~d~~~a~~~~~ 612 (713)
.++..+... +++ .....+ +.+++.+++....
T Consensus 206 ~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 206 GKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHh
Confidence 888887655 222 334567 8888888887543
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.9e-13 Score=147.80 Aligned_cols=205 Identities=53% Similarity=0.871 Sum_probs=110.6
Q ss_pred ccccHhhHHHHHHhcCCccchhhhhHHHHHHHHHHHhhhccCcccCCCCCCCCCccccccchhhhccCCCceecccCCCC
Q psy6523 380 VTLDEADIALLKSYGQGQYTKSIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPK 459 (713)
Q Consensus 380 ~~l~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 459 (713)
..|++.|+..++.+|.|.+...+...|.++.....++..++|+++++++++++..|++..++..++++.++++.-
T Consensus 27 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----- 101 (467)
T 4b4t_H 27 VPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVAR----- 101 (467)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----------------CCSSSEE-----
T ss_pred CCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchHHhccccchhHhh-----
Confidence 368999999999999999999999999999999999999999999999999999999988887777666654321
Q ss_pred CCccchhcccccCCCcccccccccHHHHHHHHHHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEec
Q psy6523 460 IDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFG 539 (713)
Q Consensus 460 ~~~s~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~ 539 (713)
+|.. |.+
T Consensus 102 -------------------------------------------------------~~~~---l~~--------------- 108 (467)
T 4b4t_H 102 -------------------------------------------------------CTKI---IKG--------------- 108 (467)
T ss_dssp -------------------------------------------------------EEEC---CCC---------------
T ss_pred -------------------------------------------------------hHhH---hcc---------------
Confidence 1110 000
Q ss_pred CCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccccc
Q psy6523 540 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKIIN 619 (713)
Q Consensus 540 ~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~~~ 619 (713)
+.+..... ...+. .|. +++....... ...
T Consensus 109 --~~~~~~~~---~~~~~---------------~~~-~~~~~~~~~~------------------------------~~~ 137 (467)
T 4b4t_H 109 --NGESDETT---TDNNN---------------SGN-SNSNSNQQST------------------------------DAD 137 (467)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cccccccc---ccccc---------------ccc-ccccccccCc------------------------------ccc
Confidence 00000000 00000 000 0000000000 000
Q ss_pred cCCCCchhhhhHHHHHHHHhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHH
Q psy6523 620 ADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQ 699 (713)
Q Consensus 620 ~~~~~~~~~i~~~~~~~~~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~v 699 (713)
...+...+.+..+...+.+......+.++++.++.++.+....|.....+|++++|.+..+...++|+|+|+|||||+++
T Consensus 138 ~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~ 217 (467)
T 4b4t_H 138 EDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQ 217 (467)
T ss_dssp ---CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHH
T ss_pred ccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHH
Confidence 01122233444444455566677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCC
Q psy6523 700 IEKLREVVETPLLH 713 (713)
Q Consensus 700 k~~L~~av~~Pl~~ 713 (713)
|++|+|+|+||++|
T Consensus 218 k~~L~e~V~~pl~~ 231 (467)
T 4b4t_H 218 IEKLREVVELPLLS 231 (467)
T ss_dssp HHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999976
No 152
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.32 E-value=2.6e-12 Score=142.39 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=78.0
Q ss_pred CeEEEEecCCCCC---ccccccCCCCCC--eEEEecCCCHHHHHHHHHHhhccC--CCcccccHHHHHHhCCCCCHHHHH
Q psy6523 509 NIKVLMATNRPDT---LDPALMRPGRLD--RKVEFGLPDLEGRTHIFKIHARSM--SVERDIRFELLARLCPNSTGAEIR 581 (713)
Q Consensus 509 ~v~vi~aTN~p~~---lD~Al~RpGRfd--~~i~i~~P~~~~R~~il~~~~~~~--~~~~~~~~~~la~~t~g~sgadi~ 581 (713)
..+||++.+.|.. ++++|++ ||+ ..+.++.|+.++|.+||+..+... .++++ -+..|+..+.| +.+++.
T Consensus 228 ~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~ 303 (440)
T 2z4s_A 228 KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLR 303 (440)
T ss_dssp CEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHH
Confidence 4555555555655 8899999 997 889999999999999999988743 34433 37889998875 899999
Q ss_pred HHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 582 SVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 582 ~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
.+++.+...|...+ ..|+.+++.+++....
T Consensus 304 ~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 304 GAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 99999988776544 4699999999988764
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=5.5e-11 Score=119.31 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhC
Q psy6523 494 VETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLC 572 (713)
Q Consensus 494 v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t 572 (713)
.+.|+..++.. ..++.+|++||+++.+++++++ |+ ..++++.|+.++..++++.++...... ++..+..+++.+
T Consensus 143 ~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 143 FNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp HHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 44455555533 3468899999999999999998 86 789999999999999999988755433 334577899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 573 PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 573 ~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.| ++.++.++++.|...+ ...|+.+++.+++
T Consensus 218 ~G-~~~~~~~~~~~~~~~~----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 218 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 248 (250)
T ss_dssp TT-CHHHHHHHHHHHHTTT----TSSBCHHHHHHHS
T ss_pred CC-CHHHHHHHHHHHHhcc----CceecHHHHHHHh
Confidence 88 8899999998885433 3478888888765
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=5e-11 Score=127.38 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=85.4
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
.+.++++||++..|++++++ ||...+.+++|+.+++.+|++.......+. ++..+..||+++.| +++++..+++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 45678899999999999999 999999999999999999999887765444 33447889999887 468999999999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 588 GMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 588 ~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
...|..++...|+.+++.++++...
T Consensus 227 ~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 8888877777899999999998753
No 155
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.26 E-value=1.2e-12 Score=109.98 Aligned_cols=69 Identities=29% Similarity=0.317 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 544 EGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 544 ~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
++|.+||+.+++++++..++|+..||+.|+|||||||.++|++|++.|+++....|+.+||+.|++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 479999999999999888999999999999999999999999999999999888999999999998774
No 156
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B
Probab=99.23 E-value=9.8e-12 Score=117.27 Aligned_cols=96 Identities=31% Similarity=0.615 Sum_probs=83.2
Q ss_pred CCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCC---CcchhcccccccccChhhhhcCCCcc
Q psy6523 282 KSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESG---QIASDLRATQVPVMSNQECRQFPGFE 358 (713)
Q Consensus 282 ~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~---~~~~~L~~~~~~~~~~~~c~~~~~~~ 358 (713)
..+.+|||||+|.+|+.+++.++|||||.... ..+..+.++|||.+...+ ..+..|+++.+++++...|.+.. .
T Consensus 4 ~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~--~ 80 (152)
T 2pka_B 4 KDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAH--P 80 (152)
T ss_dssp SBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHC--S
T ss_pred CCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhh--c
Confidence 35679999999999999999999999997654 357889999999998766 67889999999999999998753 2
Q ss_pred ccccCcccccCCCCCCCCCccc
Q psy6523 359 AKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 359 ~~it~~~~cAG~~~~~~d~c~~ 380 (713)
..++.+|+|||...++.++|++
T Consensus 81 ~~~~~~~iCa~~~~~~~~~C~G 102 (152)
T 2pka_B 81 DKVTESMLCAGYLPGGKDTCMG 102 (152)
T ss_dssp SBCCTTEEEEECTTSSCBCCTT
T ss_pred CCCCCCEEeeccCCCCCcccCC
Confidence 3578999999998888999996
No 157
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.23 E-value=8.8e-12 Score=149.52 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCeEEEEecCCCC----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC----CCc-ccccHHHHHHh-----CC
Q psy6523 508 GNIKVLMATNRPD----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM----SVE-RDIRFELLARL-----CP 573 (713)
Q Consensus 508 ~~v~vi~aTN~p~----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~----~~~-~~~~~~~la~~-----t~ 573 (713)
+.+.+|++||.++ .+|++|+| ||+. |.|+.|+.+++.+||+.++..+ .+. .+..+..+++. +.
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~ 374 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITE 374 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCS
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhccc
Confidence 4577999999885 48999999 9997 9999999999999999877643 221 23334555554 44
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy6523 574 NSTGAEIRSVCTEAGMFAIR 593 (713)
Q Consensus 574 g~sgadi~~l~~~A~~~a~~ 593 (713)
.|.+.....++.+|+..+..
T Consensus 375 ~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 375 RRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp SCTHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHh
Confidence 67788888888888766543
No 158
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.23 E-value=3.1e-11 Score=135.02 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=70.8
Q ss_pred EEEEecCCCCC---ccccccCCCCCCeEEEecCCCH-HHHHHHHHHhhc-------------------------cCCCcc
Q psy6523 511 KVLMATNRPDT---LDPALMRPGRLDRKVEFGLPDL-EGRTHIFKIHAR-------------------------SMSVER 561 (713)
Q Consensus 511 ~vi~aTN~p~~---lD~Al~RpGRfd~~i~i~~P~~-~~R~~il~~~~~-------------------------~~~~~~ 561 (713)
++|+|||.+.. +.+|+++ ||...+++++|+. +++.+|++.... +..+++
T Consensus 151 ~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d 228 (500)
T 3nbx_X 151 LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPD 228 (500)
T ss_dssp EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCH
T ss_pred hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCch
Confidence 57888886433 4459999 9999999999987 889999986543 112221
Q ss_pred cccHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 562 DIRFELLARL---------CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 562 ~~~~~~la~~---------t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
+ -++.+++. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..+
T Consensus 229 ~-v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 229 H-VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp H-HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred H-HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 1 12333332 3589999999999999999999999999999887 44433
No 159
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.21 E-value=5.6e-11 Score=126.21 Aligned_cols=67 Identities=24% Similarity=0.274 Sum_probs=52.9
Q ss_pred hhhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 90 IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 90 id~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
.+...+.+|++.+|.... .+.+...+.. -..|+.+|++||||||||++|+++|++++.+++.+++++
T Consensus 17 ~~k~rP~~~~~ivg~~~~-~~~l~~~l~~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 17 EQKYRPSTIDECILPAFD-KETFKSITSK--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp HHHSCCCSTTTSCCCHHH-HHHHHHHHHT--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred HHhhCCCCHHHHhCcHHH-HHHHHHHHHc--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 455566789999987654 4556666652 245678999999999999999999999999999998755
No 160
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.21 E-value=1.8e-11 Score=128.97 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=67.3
Q ss_pred CeEEEEecCC--------------------------CCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-----
Q psy6523 509 NIKVLMATNR--------------------------PDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM----- 557 (713)
Q Consensus 509 ~v~vi~aTN~--------------------------p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~----- 557 (713)
++++|+|||. ...++|+|+. ||+..+.+++|+.+++.+|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999 5578999998 999999999999999999999987653
Q ss_pred ----CCc-ccccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHH
Q psy6523 558 ----SVE-RDIRFELLARLCP--NSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 558 ----~~~-~~~~~~~la~~t~--g~sgadi~~l~~~A~~~a~~~ 594 (713)
.+. ++..+..|++... ..+.++|+++++.+...++.+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 111 2334566777665 678899999999998877643
No 161
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.21 E-value=1e-11 Score=134.95 Aligned_cols=46 Identities=37% Similarity=0.554 Sum_probs=36.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce-eeeecc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV-QKYVGE 173 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~-s~~~Ge 173 (713)
.++.++||+||||||||++|+++|+.++.+|+.++...+. ++|.|+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~ 116 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGE 116 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-------
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCc
Confidence 4577899999999999999999999999999999988776 455554
No 162
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=2.4e-11 Score=131.82 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=78.3
Q ss_pred CCeEEEEecCCC---CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc----CCCcccccHHHHHHhCCCC--CHH
Q psy6523 508 GNIKVLMATNRP---DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS----MSVERDIRFELLARLCPNS--TGA 578 (713)
Q Consensus 508 ~~v~vi~aTN~p---~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~~~~la~~t~g~--sga 578 (713)
.++.+|++||.+ +.+++++++ ||...+.|++|+.++..+||+..+.. ..++ +..++.+++.+.++ ...
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccCCHH
Confidence 578899999988 789999999 99889999999999999999998763 2232 33467778777633 345
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 579 EIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 579 di~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
.+.++++.|...|. +...|+.+++..++....
T Consensus 240 ~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 240 KAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 66678888877765 456799999999988764
No 163
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=99.20 E-value=1.2e-11 Score=126.06 Aligned_cols=137 Identities=17% Similarity=0.251 Sum_probs=92.5
Q ss_pred ccCcCCchhhhh--hccCceeeeeeeechhhHHhhcccccCCCCC-CceEEEEccccCCccc-ccceEEEEeeEEeeCCC
Q psy6523 200 TEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ-KDLIVVISEHNRATVY-ETQIETRRVVKVLTHPK 275 (713)
Q Consensus 200 ~~~~~~P~~~~l--~e~~~~~cggslI~~r~vltaa~c~~~~~~~-~~~vv~ig~~~~~~~~-d~~~~~~~v~~ii~h~~ 275 (713)
+...++||.+.+ ...+.++|||++|+++||||||||+...... ..+.+.-|..+..... ........+..+..||
T Consensus 36 a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~- 114 (242)
T 1agj_A 36 KDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP- 114 (242)
T ss_dssp TGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCT-
T ss_pred ccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCC-
Confidence 456789998544 4445689999999999999999999764332 2233333655432110 0001234566778888
Q ss_pred CCcCCCCCCccceEEEecCCCCC---CCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccC
Q psy6523 276 YNAQGAKSHDHDIALLKLDTPLE---FKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMS 347 (713)
Q Consensus 276 ~~~~~~~~~~~diall~L~~p~~---~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~ 347 (713)
|+ ..+|||||+|..|+. ++..++|+||+.......+..+.++|||...... .+....+++..
T Consensus 115 ~~------~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~~----~l~~~~~~~~~ 179 (242)
T 1agj_A 115 FG------AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVN----QMHRSEIELTT 179 (242)
T ss_dssp TC------TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTSTT----CCEEEEEEECC
T ss_pred CC------CCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCCc----cceeeeeeEec
Confidence 74 468999999999964 6678999999876555678889999999765431 34445555444
No 164
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Probab=99.18 E-value=9.3e-12 Score=128.30 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=92.2
Q ss_pred hhhccCceeeeeeeech------hhHHhhcccccCCC-CCCceEEEEccccCC--c--------ccccceEEEEeeEEee
Q psy6523 210 ALEQAGKFFCGGTLISD------RYVLTAAHCVRSSK-RQKDLIVVISEHNRA--T--------VYETQIETRRVVKVLT 272 (713)
Q Consensus 210 ~l~e~~~~~cggslI~~------r~vltaa~c~~~~~-~~~~~vv~ig~~~~~--~--------~~d~~~~~~~v~~ii~ 272 (713)
.+...+.++||||||++ +||||||||+.... ....+.|..+..+.. . ..+.......+..++.
T Consensus 27 rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~ 106 (268)
T 1arb_A 27 AYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVK 106 (268)
T ss_dssp EEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEE
T ss_pred EEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEe
Confidence 44455679999999998 59999999986421 112355555543211 0 0112222334677788
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCc--chhcccccccccChhh
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQI--ASDLRATQVPVMSNQE 350 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~--~~~L~~~~~~~~~~~~ 350 (713)
|+ ..++|||||+|.+|+. .+..+.++|||++...+.. ...++...++.+....
T Consensus 107 h~--------~~~nDIALLrL~~~v~-----------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~ 161 (268)
T 1arb_A 107 AT--------YATSDFTLLELNNAAN-----------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNST 161 (268)
T ss_dssp EE--------ETTTTEEEEEESSCCC-----------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEEC
T ss_pred cC--------CCCCceEEEEecCCCC-----------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeec
Confidence 87 2469999999999852 2345789999998765432 2234455667777777
Q ss_pred hhcC-CCccccccCcccccCCCCCCCCCccc
Q psy6523 351 CRQF-PGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 351 c~~~-~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
|... ..+...++..|+||++..+..++|++
T Consensus 162 ~~~~~~~~~~~~~~~~iCag~~~~~gdtC~g 192 (268)
T 1arb_A 162 SPTSFVAWGGGAGTTHLNVQWQPSGGVTEPG 192 (268)
T ss_dssp SCCEEECTTSSSCSSEEEEECCTTSCCCCTT
T ss_pred cccccccccccccCCeEEEeeecCCCCCccC
Confidence 7531 12334577899999865322378886
No 165
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=3.7e-11 Score=137.90 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred CCeEEEEecCCCC-------------CccccccCCCCCC-eEEEecCCCHHHHHHHHHHhhccCCC-------c------
Q psy6523 508 GNIKVLMATNRPD-------------TLDPALMRPGRLD-RKVEFGLPDLEGRTHIFKIHARSMSV-------E------ 560 (713)
Q Consensus 508 ~~v~vi~aTN~p~-------------~lD~Al~RpGRfd-~~i~i~~P~~~~R~~il~~~~~~~~~-------~------ 560 (713)
.++.||+|||.+. .|++||++ ||| ..+..+.|+.+ ...|.+..+..... +
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~ 509 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRK 509 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHH
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHH
Confidence 4578999999987 99999999 998 56777888888 88888887754221 0
Q ss_pred -------------ccccHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhh
Q psy6523 561 -------------RDIRFELLARL--------------CPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVAR 613 (713)
Q Consensus 561 -------------~~~~~~~la~~--------------t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~ 613 (713)
++...+.|.+. +.+.|.+.+.++++.|...|..+.+..|+.+|+.+|+.-+..
T Consensus 510 ~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 510 YIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp HHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 11122333332 358899999999999999998888999999999999875543
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.16 E-value=4.5e-10 Score=118.34 Aligned_cols=105 Identities=9% Similarity=0.046 Sum_probs=74.2
Q ss_pred HHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhC
Q psy6523 494 VETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLC 572 (713)
Q Consensus 494 v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t 572 (713)
.+.|+..|+.. ..++.+|++||.++.+++++.+ |+. .+.++.|+.+++.++++..+.+.++. ++..+..|+..+
T Consensus 119 ~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 119 QAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193 (319)
T ss_dssp HHTTGGGTSSS--SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45566666643 3467899999999999999999 886 89999999999999999988766544 344567778766
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 573 PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 573 ~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
.| +...+.++++.++.. ...++.+++.+.+.
T Consensus 194 ~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 194 GG-DFRKAINALQGAAAI-----GEVVDADTIYQITA 224 (319)
T ss_dssp TT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHHTT
T ss_pred CC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHC
Confidence 55 344444444444321 34577777766543
No 167
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.15 E-value=1.3e-10 Score=137.77 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCeEEEEecCCCCC------------ccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC---------CCc-ccccH
Q psy6523 508 GNIKVLMATNRPDT------------LDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM---------SVE-RDIRF 565 (713)
Q Consensus 508 ~~v~vi~aTN~p~~------------lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~---------~~~-~~~~~ 565 (713)
.++++|+|||.+.. ++|+|+. |||..|.|++|+.+++.+|++.++..+ .+. ++.-+
T Consensus 619 ~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~ 696 (758)
T 3pxi_A 619 RNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAK 696 (758)
T ss_dssp TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHH
Confidence 46789999998765 7889998 999999999999999999999887653 111 23335
Q ss_pred HHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q psy6523 566 ELLARL--CPNSTGAEIRSVCTEAGMFAIR 593 (713)
Q Consensus 566 ~~la~~--t~g~sgadi~~l~~~A~~~a~~ 593 (713)
+.|++. ...+...+|+++++++...++.
T Consensus 697 ~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 697 AKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 566654 3356778999999988776654
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=3.2e-10 Score=121.41 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=71.5
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEA 587 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~A 587 (713)
++.+|++||+++.+++++++ |+. .+.++.|+.++..++++..+....+. ++..+..|++.+.|. ...+.++++.+
T Consensus 163 ~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~ 238 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSA 238 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHT
T ss_pred CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 45677899999999999999 996 88999999999999999888654433 344578889888874 55555566665
Q ss_pred HHHHHHHHhh-hcCHHHHHHHHh
Q psy6523 588 GMFAIRARRK-VASEKDFLEAVN 609 (713)
Q Consensus 588 ~~~a~~~~~~-~v~~~d~~~a~~ 609 (713)
+..+-+.... .|+.+++.+++.
T Consensus 239 ~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 239 SKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHhcCCCccCccccHHHHHHHhC
Confidence 5544322111 689999887765
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.12 E-value=7.3e-11 Score=139.96 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCeEEEEecCCCC-------------------------CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC-----
Q psy6523 508 GNIKVLMATNRPD-------------------------TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM----- 557 (713)
Q Consensus 508 ~~v~vi~aTN~p~-------------------------~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~----- 557 (713)
.++++|+|||.+. .++|+|+. |||..|.|+.|+.+++.+|++.++..+
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999865 68899998 999999999999999999999988633
Q ss_pred ----CCc-ccccHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHH
Q psy6523 558 ----SVE-RDIRFELLARLC--PNSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 558 ----~~~-~~~~~~~la~~t--~g~sgadi~~l~~~A~~~a~~~ 594 (713)
.+. ++--++.|++.. ..+..++|..+++.+...++.+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 111 223355666543 3567889999999887766543
No 170
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.12 E-value=2e-09 Score=116.15 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=78.3
Q ss_pred HHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhC
Q psy6523 494 VETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLC 572 (713)
Q Consensus 494 v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t 572 (713)
.+.|+..++.. ..++++|++||.++.+++++++ |+ ..+.++.|+.++..++++.++.+.++. ++..+..+++.+
T Consensus 136 ~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 45556666543 4578899999999999999998 87 789999999999999999888755443 233467788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy6523 573 PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 573 ~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
.| +..++.+++..+...+ ...++.+++.+++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 77 6778888887775332 3457777766554
No 171
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.11 E-value=2.4e-12 Score=124.59 Aligned_cols=67 Identities=25% Similarity=0.451 Sum_probs=48.5
Q ss_pred hhcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc----------CceeEE
Q psy6523 91 DAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT----------DACFIR 160 (713)
Q Consensus 91 d~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~----------~~~~~~ 160 (713)
+...+..|++.+|.++++++.+ +.+.. ..++++||+||||||||++|+++|.++ +.+++.
T Consensus 14 ~~~~~~~~~~~~g~~~~~~~l~-~~l~~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 14 ERAEQGKLDPVIGRDEEIRRTI-QVLQR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHH-HHHTS---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HHHhhccccccccchHHHHHHH-HHHhc---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 3444567888888877655443 33332 346789999999999999999999986 677777
Q ss_pred eecccce
Q psy6523 161 VIGSELV 167 (713)
Q Consensus 161 V~~~~i~ 167 (713)
++...+.
T Consensus 84 ~~~~~~~ 90 (195)
T 1jbk_A 84 LDMGALV 90 (195)
T ss_dssp ECHHHHH
T ss_pred eeHHHHh
Confidence 7665543
No 172
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=99.10 E-value=1e-10 Score=121.30 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=87.9
Q ss_pred cCcCCchhhh--hhc---cCceeeeeeeechhhHHhhcccccCCCC-CCceEEEEccccCCcccccceEEEEeeEEeeCC
Q psy6523 201 EVNEYPWVVA--LEQ---AGKFFCGGTLISDRYVLTAAHCVRSSKR-QKDLIVVISEHNRATVYETQIETRRVVKVLTHP 274 (713)
Q Consensus 201 ~~~~~P~~~~--l~e---~~~~~cggslI~~r~vltaa~c~~~~~~-~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~ 274 (713)
...++||.+. +.. .+.++|||+||+++||||||||+..... ...+.|+.|..+.....+. ...+.+++.|+
T Consensus 13 ~~~~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g---~~~~~~i~~~~ 89 (274)
T 2o8l_A 13 DTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG---GFTAEQITKYS 89 (274)
T ss_dssp STTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTC---CEEEEEEEECS
T ss_pred CCCCCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCcccCCCcceEEEEecccCcccccCc---cEEEEEEEeCC
Confidence 4567888754 332 3458999999999999999999976433 2347788887765433222 35677788874
Q ss_pred CCCcCCCCCCccceEEEecCCCC---CCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 275 KYNAQGAKSHDHDIALLKLDTPL---EFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 275 ~~~~~~~~~~~~diall~L~~p~---~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
..+|||||+|..++ .+...++++||+.......+..+.++|||...
T Consensus 90 ---------~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~ 138 (274)
T 2o8l_A 90 ---------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDK 138 (274)
T ss_dssp ---------SSSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTS
T ss_pred ---------CCCcEEEEEecCcccccccccccccccccccccccCCCEEEEEECCCCC
Confidence 35899999999997 47889999999876556678889999999754
No 173
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1
Probab=99.09 E-value=7.3e-11 Score=122.06 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=87.4
Q ss_pred cCcCCchhhh--hhc---cCceeeeeeeechhhHHhhcccccCCCC-CCceEEEEccccCCcccccceEEEEeeEEeeCC
Q psy6523 201 EVNEYPWVVA--LEQ---AGKFFCGGTLISDRYVLTAAHCVRSSKR-QKDLIVVISEHNRATVYETQIETRRVVKVLTHP 274 (713)
Q Consensus 201 ~~~~~P~~~~--l~e---~~~~~cggslI~~r~vltaa~c~~~~~~-~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~ 274 (713)
...++||.+. +.. .+.++|||+||+++||||||||+..... ...+.|+.|..+.....+. ...+.+++.|+
T Consensus 13 ~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g---~~~~~~i~~~~ 89 (268)
T 1wcz_A 13 DTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNG---GFTAEQITKYS 89 (268)
T ss_dssp CTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTC---CEEEEEEEECS
T ss_pred CCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCCccCCcceEEEEecccCcccccCC---cEEEEEEecCC
Confidence 4567888754 432 3568999999999999999999976433 2357788888765433222 24567777773
Q ss_pred CCCcCCCCCCccceEEEecCCCC---CCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 275 KYNAQGAKSHDHDIALLKLDTPL---EFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 275 ~~~~~~~~~~~~diall~L~~p~---~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
..+|||||+|..++ .+...++++||+.......+..+.++|||...
T Consensus 90 ---------~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~ 138 (268)
T 1wcz_A 90 ---------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDK 138 (268)
T ss_dssp ---------SSSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTS
T ss_pred ---------CCCcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCC
Confidence 35899999999997 47788999999876555678889999999654
No 174
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=99.08 E-value=9e-11 Score=119.81 Aligned_cols=121 Identities=17% Similarity=0.270 Sum_probs=87.2
Q ss_pred cCcCCchhhhh--hccCceeeeeeeechhhHHhhcccccCCCCC-CceEEEEccccCCc-c-cccceEEEEeeEEeeCCC
Q psy6523 201 EVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ-KDLIVVISEHNRAT-V-YETQIETRRVVKVLTHPK 275 (713)
Q Consensus 201 ~~~~~P~~~~l--~e~~~~~cggslI~~r~vltaa~c~~~~~~~-~~~vv~ig~~~~~~-~-~d~~~~~~~v~~ii~h~~ 275 (713)
...++||++.+ ...+.++|||++|+++||||||||+...... ..+.+..|.++... . .........+..+..||
T Consensus 30 ~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp- 108 (246)
T 1qtf_A 30 DNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP- 108 (246)
T ss_dssp CCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCT-
T ss_pred hcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCC-
Confidence 46789999653 3345689999999999999999999754321 34566677654322 0 00011245677788898
Q ss_pred CCcCCCCCCccceEEEecCCCC---CCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 276 YNAQGAKSHDHDIALLKLDTPL---EFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 276 ~~~~~~~~~~~diall~L~~p~---~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
|+ .++|||||+|..++ .++..++|+||+.......+..+.+.||+..
T Consensus 109 ~~------~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~~~~g~~v~v~G~p~g 158 (246)
T 1qtf_A 109 YG------QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYN 158 (246)
T ss_dssp TC------TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTT
T ss_pred CC------CCCCEEEEEEeCCccccccccceeeeecCCccccCCCCEEEEEECCCC
Confidence 54 36899999999998 5667899999997655567888999999653
No 175
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.07 E-value=1.9e-10 Score=124.32 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=83.9
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCC---CCccccccCCCCCC-eEEEecCCCHHHHHHHHHHhhcc----CCCccccc
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRP---DTLDPALMRPGRLD-RKVEFGLPDLEGRTHIFKIHARS----MSVERDIR 564 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p---~~lD~Al~RpGRfd-~~i~i~~P~~~~R~~il~~~~~~----~~~~~~~~ 564 (713)
++..++..++.. ...++.+|++||.+ +.+++.+.+ ||. +.|.++.++.++..+||+..+.. ..+. +-.
T Consensus 148 ~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~ 223 (386)
T 2qby_A 148 ILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNV 223 (386)
T ss_dssp HHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHH
T ss_pred HHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHH
Confidence 345555555544 34578899999988 578889988 886 59999999999999999987653 2222 233
Q ss_pred HHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 565 FELLARLCP---NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 565 ~~~la~~t~---g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
+..+++.+. | +...+..+|+.|+..|..++...++.+++..|+....
T Consensus 224 ~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 224 IKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 556666665 4 4566777999998888776777899999999988764
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=2.5e-09 Score=115.92 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=88.1
Q ss_pred HHHhhhhcccCCCC--CCCeEEEEecCCC---CCccccccCCCCCCe-EEEecCCCHHHHHHHHHHhhcc----CCCccc
Q psy6523 493 VVETPLLHLDGFDP--RGNIKVLMATNRP---DTLDPALMRPGRLDR-KVEFGLPDLEGRTHIFKIHARS----MSVERD 562 (713)
Q Consensus 493 ~v~~lL~~~d~~~~--~~~v~vi~aTN~p---~~lD~Al~RpGRfd~-~i~i~~P~~~~R~~il~~~~~~----~~~~~~ 562 (713)
.+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ..+ ++
T Consensus 141 ~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~ 217 (389)
T 1fnn_A 141 ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SE 217 (389)
T ss_dssp HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CH
T ss_pred HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CH
Confidence 34445555544321 1468899999998 788899888 8875 8999999999999999988764 222 34
Q ss_pred ccHHHHHHhCCCC--------CHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 563 IRFELLARLCPNS--------TGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 563 ~~~~~la~~t~g~--------sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
..+..+++.+.+. ....+.++++.|...|..++...++.+++..++....
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 4567788888422 5678899999999888877778899999999887654
No 177
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.3e-09 Score=112.06 Aligned_cols=92 Identities=10% Similarity=0.147 Sum_probs=66.1
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
.++.+|++||.++.+++++.+ |+. .+.++.|+.++..++++..+....+. ++-.++.|+..+.| +...+.++++.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 467888999999999999999 887 78999999999999999988766543 34456778887765 45555555555
Q ss_pred HHHHHHHHHhhhcCHHHHHHHH
Q psy6523 587 AGMFAIRARRKVASEKDFLEAV 608 (713)
Q Consensus 587 A~~~a~~~~~~~v~~~d~~~a~ 608 (713)
++.. ...++.+++...+
T Consensus 215 ~~~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 215 AAAL-----DKKITDENVFMVA 231 (327)
T ss_dssp HHTT-----CSEECHHHHHHHT
T ss_pred HHhc-----CCCCCHHHHHHHH
Confidence 5422 2245555555443
No 178
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.96 E-value=3e-11 Score=116.47 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=48.7
Q ss_pred hcCCccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc----------CceeEEe
Q psy6523 92 AIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT----------DACFIRV 161 (713)
Q Consensus 92 ~i~~~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~----------~~~~~~V 161 (713)
...+..|++.+|.+.++++.+. .+.. ..++++||+||||||||++|+++|.++ +.+++.+
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~-~l~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQ-ILSR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHH-HHTS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred HHhccccchhhcchHHHHHHHH-HHhC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3334578888888876665443 3322 346789999999999999999999986 7778877
Q ss_pred ecccce
Q psy6523 162 IGSELV 167 (713)
Q Consensus 162 ~~~~i~ 167 (713)
+...+.
T Consensus 85 ~~~~~~ 90 (187)
T 2p65_A 85 DLSSLI 90 (187)
T ss_dssp CHHHHH
T ss_pred eHHHhh
Confidence 765554
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=1.1e-08 Score=107.92 Aligned_cols=94 Identities=7% Similarity=0.040 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
.++.+|++||.++.+++++++ |+. .+.++.|+.++..++++..+....+. ++..+..+++.+.|. ...+.+++..
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~ 211 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQS 211 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 467888899999999999999 876 89999999999999999887654332 234567788887664 3444444444
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 587 AGMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 587 A~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
++. ....++.+++.+++..
T Consensus 212 ~~~-----~~~~i~~~~v~~~~~~ 230 (323)
T 1sxj_B 212 TVA-----GHGLVNADNVFKIVDS 230 (323)
T ss_dssp HHH-----HHSSBCHHHHHHHHTS
T ss_pred HHh-----cCCCcCHHHHHHHHCC
Confidence 432 1246888888777653
No 180
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.8e-10 Score=118.82 Aligned_cols=49 Identities=6% Similarity=0.133 Sum_probs=40.9
Q ss_pred CCCeEEEEecCCCCC----ccccccCCCCCC-eEEEecCCCHHHHHHHHHHhhccC
Q psy6523 507 RGNIKVLMATNRPDT----LDPALMRPGRLD-RKVEFGLPDLEGRTHIFKIHARSM 557 (713)
Q Consensus 507 ~~~v~vi~aTN~p~~----lD~Al~RpGRfd-~~i~i~~P~~~~R~~il~~~~~~~ 557 (713)
..+++||+.+|..+. |++++++ ||. .+|.|+..+.++..+|++..+...
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 456899999999875 5666777 897 689999999999999999888754
No 181
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.91 E-value=1.4e-09 Score=130.29 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=72.1
Q ss_pred HHHHhhhhcccCCC---------CCCCeEEEEecCCC--------------------------CCccccccCCCCCCeEE
Q psy6523 492 EVVETPLLHLDGFD---------PRGNIKVLMATNRP--------------------------DTLDPALMRPGRLDRKV 536 (713)
Q Consensus 492 ~~v~~lL~~~d~~~---------~~~~v~vi~aTN~p--------------------------~~lD~Al~RpGRfd~~i 536 (713)
.+.+.||..||.-. .-.++++|+|||.+ ..+.|+|+. |||..+
T Consensus 675 ~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i 752 (854)
T 1qvr_A 675 DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIV 752 (854)
T ss_dssp HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCC
T ss_pred HHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEE
Confidence 45566666666321 11368899999983 245677777 999999
Q ss_pred EecCCCHHHHHHHHHHhhccC---------CCc-ccccHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHH
Q psy6523 537 EFGLPDLEGRTHIFKIHARSM---------SVE-RDIRFELLARLCP--NSTGAEIRSVCTEAGMFAIRA 594 (713)
Q Consensus 537 ~i~~P~~~~R~~il~~~~~~~---------~~~-~~~~~~~la~~t~--g~sgadi~~l~~~A~~~a~~~ 594 (713)
.+.+|+.++...|++.++..+ .+. ++--++.|++... .+..++|+++++.+...++.+
T Consensus 753 ~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 753 VFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999888632 111 2333566777655 678899999999998777643
No 182
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=98.91 E-value=7.1e-10 Score=109.41 Aligned_cols=110 Identities=14% Similarity=0.252 Sum_probs=76.5
Q ss_pred ccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcC
Q psy6523 200 TEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQ 279 (713)
Q Consensus 200 ~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~ 279 (713)
+..+++||++.+. ...|+|++|+++||||||||+........+.+..+ ... . ......+.+++.|+
T Consensus 8 ~~~~~~P~~~~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~v~v~~~-~~~---~--~~~~~~~~~i~~~~----- 73 (204)
T 2vid_A 8 KDTNIFPYTGVVA---FKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPN-SDK---G--NGGIYSIKKIINYP----- 73 (204)
T ss_dssp SCTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHTTCCTTCEEEESCC-SSS---C--CSCEEEEEEEEECS-----
T ss_pred ccCCcCchhheEE---eeeEEEEEEECCEEEEChhHCCCccCCceEEEEec-ccc---C--CCcEEEeeEEecCC-----
Confidence 4567899999654 25899999999999999999976433222222111 111 1 11234566676653
Q ss_pred CCCCCccceEEEecCC--------CCCCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 280 GAKSHDHDIALLKLDT--------PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 280 ~~~~~~~diall~L~~--------p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
.++|||||+|.. ++.++..++|+|++. ....+..+.+.|||...
T Consensus 74 ----~~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~--~~~~g~~~~~~G~g~~~ 125 (204)
T 2vid_A 74 ----GKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAA--GAKAGERIKVIGYPHPY 125 (204)
T ss_dssp ----SSSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCS--CCCTTCEEEEEECCCCC
T ss_pred ----CCCeEEEEEEcCcccccccccccccccccccccCC--cCCCCCEEEEEeCCCCC
Confidence 357999999985 567778899999985 44567889999999754
No 183
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=8.1e-10 Score=119.19 Aligned_cols=76 Identities=38% Similarity=0.684 Sum_probs=70.0
Q ss_pred HhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 638 VVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 638 ~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+..+...+.++++..+.++.+....+...-.+|+.++|+++++...++|+|+|+|||||+++|++|+|+|+||++|
T Consensus 95 ~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~ 170 (405)
T 4b4t_J 95 IVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKH 170 (405)
T ss_dssp EECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHC
T ss_pred EEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4456677888899999999999999988888999999999999999999999999999999999999999999986
No 184
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=98.85 E-value=1.4e-09 Score=108.09 Aligned_cols=108 Identities=13% Similarity=0.217 Sum_probs=75.8
Q ss_pred cCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCC
Q psy6523 201 EVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 280 (713)
Q Consensus 201 ~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~ 280 (713)
...++||++.+. ...|||++|+++||||||||+........+.|..+... .+ .....+.+++.+ +
T Consensus 10 ~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~~----~~--g~~~~~~~v~~~---~--- 74 (210)
T 2as9_A 10 DTNNFPYNGVVS---FKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDK----GN--GGIYKIKSISDY---P--- 74 (210)
T ss_dssp CTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGGG----CC--SCEEEEEEEEEC---S---
T ss_pred cCCcCCeEEEEE---eeeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCccc----CC--CCEEEEEEEEeC---C---
Confidence 467899999664 46899999999999999999975432223444333211 11 123344455543 2
Q ss_pred CCCCccceEEEecCC--------CCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 281 AKSHDHDIALLKLDT--------PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 281 ~~~~~~diall~L~~--------p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
.++|||||+|.. |+.++..++|+||+. ....+..+.+.||+..
T Consensus 75 ---~~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~--~~~~g~~v~v~G~p~~ 125 (210)
T 2as9_A 75 ---GDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK--DAKVDDKIKVIGYPLP 125 (210)
T ss_dssp ---SSSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS--CCCTTCEEEEEECSST
T ss_pred ---CCCcEEEEEecCccccccccccccccccceeecCC--CCCCCCEEEEEeCCCC
Confidence 258999999988 678888999999973 4456788999999864
No 185
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=98.85 E-value=1.3e-09 Score=107.38 Aligned_cols=109 Identities=15% Similarity=0.208 Sum_probs=74.8
Q ss_pred ccCcCCchhhhhhccCceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcC
Q psy6523 200 TEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQ 279 (713)
Q Consensus 200 ~~~~~~P~~~~l~e~~~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~ 279 (713)
+..+++||++.+. .+.|||++|+++||||||||+..... ....+.++..... .......+.+++.+ +
T Consensus 8 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~-~~~~v~v~~~~~~----~~~~~~~~~~i~~~---~-- 74 (200)
T 2w7s_A 8 TDATKEPYNSVVA---FVGGTGVVVGKNTIVTNKHIAKSNDI-FKNRVSAHHSSKG----KGGGNYDVKDIVEY---P-- 74 (200)
T ss_dssp SCTTSTTGGGEEE---ETTEEEEEEETTEEEECHHHHHHHHH-TTCCEEETCCSSS----CCCCEECEEEEEEC---S--
T ss_pred eccccCCcccccc---cceEEEEEEECCEEEEChhhcCCccc-CCcEEEEEecCcc----CCCcEEEEEEEecC---C--
Confidence 4567899999775 46899999999999999999864321 1122344332211 11123344455543 2
Q ss_pred CCCCCccceEEEecCCC----CCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 280 GAKSHDHDIALLKLDTP----LEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 280 ~~~~~~~diall~L~~p----~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
.++|||||+|..+ +.+++.++|+||+. ....+..+.+.||+.
T Consensus 75 ----~~~DiAll~l~~~~~~~~~~~~~v~pi~l~~--~~~~g~~v~v~G~p~ 120 (200)
T 2w7s_A 75 ----GKEDLAIVHVHETSTEGLNFNKNVSYTKFAD--GAKVKDRISVIGYPK 120 (200)
T ss_dssp ----SSSSCEEEEECSBCTTSCBGGGSCCCCCBCC--CCCTTCEEEEEECTT
T ss_pred ----CcceEEEEEECCCCCCcccccccccceeccc--cCCCCCEEEEEECCC
Confidence 2589999999885 88888999999973 345678899999853
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=4.5e-08 Score=104.81 Aligned_cols=77 Identities=8% Similarity=0.057 Sum_probs=60.0
Q ss_pred CeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-c-cccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 509 NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-R-DIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 509 ~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~-~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
++.+|.+||.++.+++++++ |+ ..+.|+.|+.++..++++..+.+.++. + +..+..+++.+.| +.+++.++++.
T Consensus 164 ~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~ 239 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLES 239 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTH
T ss_pred CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 57889999999999999999 99 889999999999999999888755443 3 4457788887765 45555556555
Q ss_pred HHH
Q psy6523 587 AGM 589 (713)
Q Consensus 587 A~~ 589 (713)
++.
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 187
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.78 E-value=1.6e-08 Score=103.86 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=41.8
Q ss_pred cccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC---ceeEEeecccce
Q psy6523 97 RFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD---ACFIRVIGSELV 167 (713)
Q Consensus 97 r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~---~~~~~V~~~~i~ 167 (713)
+|++.+|....+++.+.....- ...+..+||+||||||||++|++++.... .+|+.|+++.+.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~--------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHL--------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALN 69 (265)
T ss_dssp ------CCCHHHHHHHHHHHHH--------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSC
T ss_pred ccccceeCCHHHHHHHHHHHHH--------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCC
Confidence 6778888777666543322211 12357899999999999999999999875 789999987653
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=1.9e-08 Score=107.46 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=47.7
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc--CCCcccccHHHHHHhCCC
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS--MSVERDIRFELLARLCPN 574 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~--~~~~~~~~~~~la~~t~g 574 (713)
..+.+|++||.++.++|++++ |+. .+.+..++.++..++++..+.. +.++ +..+..++..+.|
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~-~~~~~~i~~~s~G 203 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLS-PNAEKALIELSNG 203 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBC-HHHHHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 456778889999999999999 986 7889888999999999888744 3343 3345666765544
No 189
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.72 E-value=2.3e-08 Score=105.22 Aligned_cols=41 Identities=32% Similarity=0.439 Sum_probs=34.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
..+..|||+||||||||++|+++++.. +.+|+.|+++.+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~ 66 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE 66 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh
Confidence 346789999999999999999999954 68899999876643
No 190
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.64 E-value=3.6e-08 Score=128.19 Aligned_cols=46 Identities=20% Similarity=0.389 Sum_probs=42.0
Q ss_pred CeEEEEecCCCC-----CccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccC
Q psy6523 509 NIKVLMATNRPD-----TLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557 (713)
Q Consensus 509 ~v~vi~aTN~p~-----~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~ 557 (713)
++.+|||||.|. .|||+|+| || ..|+++.|+.+++..|++.+++..
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 589999999994 89999999 99 889999999999999999888643
No 191
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.62 E-value=3.7e-07 Score=97.22 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=62.8
Q ss_pred HHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhC
Q psy6523 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLC 572 (713)
Q Consensus 493 ~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t 572 (713)
..+.||..|+. +..++++|++||.++.|+|++++ |+. .+.|+.|+.++..++++... .++ +..+..+++.+
T Consensus 124 a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s 194 (334)
T 1a5t_A 124 AANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLS 194 (334)
T ss_dssp HHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHc
Confidence 45677877874 45578899999999999999999 884 79999999999999998765 222 34456788877
Q ss_pred CCCCHHHHHHHHHHH
Q psy6523 573 PNSTGAEIRSVCTEA 587 (713)
Q Consensus 573 ~g~sgadi~~l~~~A 587 (713)
.| +...+.+++..+
T Consensus 195 ~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 195 AG-SPGAALALFQGD 208 (334)
T ss_dssp TT-CHHHHHHTTSSH
T ss_pred CC-CHHHHHHHhccc
Confidence 66 444444444443
No 192
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.60 E-value=2.5e-09 Score=133.32 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=44.8
Q ss_pred CccccCCCCCcHHHH---HHHHHHHhC----------cccccc------cCCC----------CCCc--EEeeCCCCCch
Q psy6523 95 GARFDDGAGGDNEVQ---RTMLELINQ----------PEKFVN------LGIE----------PPKG--VLLFGPPGTGK 143 (713)
Q Consensus 95 ~~r~~d~iG~~~~~~---~~i~~~l~~----------~~~~~~------~gi~----------~p~g--vLL~GPpGtGK 143 (713)
.+.|+|+.|..+..+ +.+.+.+.+ ++.|+. .|+. +|+| +|+||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 367888877776433 344444533 667776 4555 7777 99999999999
Q ss_pred hHHHHHHhhccC---ceeEEeecccce
Q psy6523 144 TLCARAVANRTD---ACFIRVIGSELV 167 (713)
Q Consensus 144 T~la~alA~e~~---~~~~~V~~~~i~ 167 (713)
|+||+++|.+.. .|.+.|+..+..
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~ 1122 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHAL 1122 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccch
Confidence 999999998774 444445544444
No 193
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.3e-08 Score=108.28 Aligned_cols=76 Identities=34% Similarity=0.533 Sum_probs=69.2
Q ss_pred HhhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 638 VVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 638 ~~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+..+...+.+..+..+..+.+....+...-.+|+.++|++..+...+.|+|+|+|||||+++|++|+|+|+||++|
T Consensus 129 ~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~ 204 (437)
T 4b4t_I 129 YVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTH 204 (437)
T ss_dssp EEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHC
T ss_pred EEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhC
Confidence 4456677888899999999999988888888899999999999999999999999999999999999999999986
No 194
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.8e-08 Score=107.75 Aligned_cols=75 Identities=39% Similarity=0.597 Sum_probs=68.5
Q ss_pred hhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 639 VDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 639 ~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
..+...+.++.+..+.++.+....+...-.+|..++|++..+...+.|+|+|+|||||+++|++|+++|+||++|
T Consensus 129 v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~ 203 (437)
T 4b4t_L 129 VGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKN 203 (437)
T ss_dssp ECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHC
T ss_pred EecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhC
Confidence 345667788888999999999888888888899999999999999999999999999999999999999999986
No 195
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.49 E-value=3.6e-07 Score=105.24 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=70.2
Q ss_pred CeEEEEecCCC--CCccccccCCCCCC---eEEEecC--C-CHHHHHHHHHHhhccC-------CCcccccHHHHHHh--
Q psy6523 509 NIKVLMATNRP--DTLDPALMRPGRLD---RKVEFGL--P-DLEGRTHIFKIHARSM-------SVERDIRFELLARL-- 571 (713)
Q Consensus 509 ~v~vi~aTN~p--~~lD~Al~RpGRfd---~~i~i~~--P-~~~~R~~il~~~~~~~-------~~~~~~~~~~la~~-- 571 (713)
++.||+|||+. +.+||+|++ ||+ ..+.++. + +.+....+++.+.+.. .+ ++--+..|.+.
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-s~eAl~~Li~~~~ 328 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHF-TKEAVEEIVREAQ 328 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCB-BHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccC-CHHHHHHHHHHHh
Confidence 57899999987 789999999 997 4555543 2 3455666665544321 22 22334445442
Q ss_pred -CCCC------CHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhH
Q psy6523 572 -CPNS------TGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNK 610 (713)
Q Consensus 572 -t~g~------sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~ 610 (713)
..|- +.+++.++++.|...|..+....|+.+|+.+|+..
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2553 78999999999988888778889999999999854
No 196
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.43 E-value=1.8e-07 Score=102.06 Aligned_cols=102 Identities=16% Similarity=0.090 Sum_probs=76.0
Q ss_pred CCeEEEEecCCCC---Ccc---ccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCC---CcccccHHHHHHhCC-----
Q psy6523 508 GNIKVLMATNRPD---TLD---PALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMS---VERDIRFELLARLCP----- 573 (713)
Q Consensus 508 ~~v~vi~aTN~p~---~lD---~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~---~~~~~~~~~la~~t~----- 573 (713)
.++.+|++||.++ .++ +.+.+ ||...+.++.++.++..++|+..+.... .-++..+..+++.+.
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 5688999998776 455 77777 7777799999999999999987664211 112334677888887
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhh
Q psy6523 574 -NSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612 (713)
Q Consensus 574 -g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~ 612 (713)
| .+..+..+++.|...|..+....++.+++..++....
T Consensus 256 ~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 256 DG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 6 4677888999888888776667888899988887653
No 197
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.8e-08 Score=105.68 Aligned_cols=73 Identities=38% Similarity=0.650 Sum_probs=65.2
Q ss_pred cCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 641 LADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 641 ~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
....+.++.+.++.++.+....+...-.+|++++|++.++...+.|+|+|+|||||+++|++|+++|+||++|
T Consensus 131 ~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~ 203 (434)
T 4b4t_M 131 MVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKR 203 (434)
T ss_dssp CCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHC
T ss_pred cccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhC
Confidence 3445677888888888888888887777888999999999999999999999999999999999999999986
No 198
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-07 Score=103.03 Aligned_cols=75 Identities=35% Similarity=0.605 Sum_probs=67.1
Q ss_pred hhcCCCCCcccccccccccccccccccccCCCCCCCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 639 VDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 639 ~~~~~sv~~~d~~~~~~~~~~~~~~~~~~~~p~~~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
..+...+.++.+..+..+.+....+.....+|+.++|+...+...+.|+|+|+|||||+++|++|+++|+||++|
T Consensus 120 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~ 194 (428)
T 4b4t_K 120 VRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQ 194 (428)
T ss_dssp ECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHC
T ss_pred EeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhC
Confidence 345566777888888888888888888888899999999999999999999999999999999999999999976
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=2.2e-06 Score=89.97 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhh
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHA 554 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~ 554 (713)
...|.||..|+. +.+++++|++||.|+.|.|+++. | .+.|+.|+.++..+.++..+
T Consensus 97 ~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 97 QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 345678888874 45678888889999999999999 8 89999999999999988776
No 200
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.23 E-value=1.2e-08 Score=127.27 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=34.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
|+.+...++++||||+|||+||..+|.+. +.+++.++..+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 68999999999999999999999998864 4466777665544
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=7.9e-06 Score=75.71 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=33.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
.+..|||+||||||||++|++++... +.+|+ +++..+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 45679999999999999999999986 78899 88876554
No 202
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.94 E-value=4.1e-06 Score=80.49 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=49.0
Q ss_pred CccccCCCCCcHHHH---HHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeecccce
Q psy6523 95 GARFDDGAGGDNEVQ---RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIGSELV 167 (713)
Q Consensus 95 ~~r~~d~iG~~~~~~---~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~~~i~ 167 (713)
..+|++.++.....+ +.+.+++.+ +.+.+.++++|+||||||||+|++++|+.. |..++.++..++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 457888777544333 333444433 234567899999999999999999999876 6677777776666
Q ss_pred eee
Q psy6523 168 QKY 170 (713)
Q Consensus 168 s~~ 170 (713)
..+
T Consensus 80 ~~~ 82 (180)
T 3ec2_A 80 FRL 82 (180)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.93 E-value=2.6e-06 Score=78.86 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
.+..|||+||||||||++|++++.+.+ +|+.+++.++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~ 64 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI 64 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh
Confidence 456799999999999999999999988 999998877654
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.88 E-value=8.6e-06 Score=79.64 Aligned_cols=70 Identities=27% Similarity=0.287 Sum_probs=48.0
Q ss_pred CccccCCCCCcHH---HHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 95 GARFDDGAGGDNE---VQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 95 ~~r~~d~iG~~~~---~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
..+|++.++.... ..+.+..++.+... -..+++++|+||||||||++|++++++. +.+++.++.+++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 4577777775543 22344455443221 0135899999999999999999999976 67788788776654
Q ss_pred e
Q psy6523 169 K 169 (713)
Q Consensus 169 ~ 169 (713)
.
T Consensus 96 ~ 96 (202)
T 2w58_A 96 E 96 (202)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=97.73 E-value=4.1e-05 Score=77.14 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=64.0
Q ss_pred CchhhhhhccC-----ceeeeeeeechhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcC
Q psy6523 205 YPWVVALEQAG-----KFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQ 279 (713)
Q Consensus 205 ~P~~~~l~e~~-----~~~cggslI~~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~ 279 (713)
.|+++.+.-.. ...|+|++|+++||||++||+.... .+.|..+. .......+..|+
T Consensus 41 ~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~~~---~~~V~~~~-----------~~~~~~~v~~~~----- 101 (237)
T 3k6y_A 41 EPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAGSN---NVTVYAGD-----------KPFEATVVSYDP----- 101 (237)
T ss_dssp GGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTTCS---EEEEEETT-----------EEEECEEEEEET-----
T ss_pred cCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCCCc---eEEEEECC-----------cEEEEEEEEEcC-----
Confidence 46666665322 4679999999999999999986532 45555543 011222222332
Q ss_pred CCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 280 GAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 280 ~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
++|||||++. ...+++++|+ ......+..+.+.||+...
T Consensus 102 -----~~DiAll~l~-----~~~~~~~~l~-~~~~~~G~~v~v~G~p~g~ 140 (237)
T 3k6y_A 102 -----SVDVAILAVP-----HLPPPPLVFA-AEPAKTGADVVVLGYPGGG 140 (237)
T ss_dssp -----TTTEEEEECT-----TCCSCCCCBC-SSCCCTTCEEEEEECGGGC
T ss_pred -----CCCEEEEEeC-----CCCCCceecC-CCCCCCCCEEEEEECCCCC
Confidence 5799999998 3468899998 4445567889999998643
No 206
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.49 E-value=3.7e-05 Score=75.01 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
|++..+++|+|||||||||++|.++|+.+.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45566789999999999999999999986543
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.47 E-value=4.9e-05 Score=79.74 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=47.8
Q ss_pred CccccCCCCCcHH---HHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhccC----ceeEEeecccce
Q psy6523 95 GARFDDGAGGDNE---VQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD----ACFIRVIGSELV 167 (713)
Q Consensus 95 ~~r~~d~iG~~~~---~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~~----~~~~~V~~~~i~ 167 (713)
..+|++..+.... +......++.... -.+.++++||||||||||.||+|+|+++. .+++.++.++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 3578877765422 2334444554321 12468999999999999999999998554 778888877766
Q ss_pred eee
Q psy6523 168 QKY 170 (713)
Q Consensus 168 s~~ 170 (713)
..+
T Consensus 194 ~~l 196 (308)
T 2qgz_A 194 IDV 196 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 208
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.46 E-value=5.5e-05 Score=77.03 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=25.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
++.+++|||||||||||++|+|||+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44568999999999999999999997665
No 209
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.45 E-value=0.0024 Score=69.83 Aligned_cols=106 Identities=17% Similarity=0.029 Sum_probs=68.0
Q ss_pred CeEEEEecCCCC-----------CccccccCCCCCCeEEE-ecCCCHHHH---------HHHHHH---hhc--c--CCCc
Q psy6523 509 NIKVLMATNRPD-----------TLDPALMRPGRLDRKVE-FGLPDLEGR---------THIFKI---HAR--S--MSVE 560 (713)
Q Consensus 509 ~v~vi~aTN~p~-----------~lD~Al~RpGRfd~~i~-i~~P~~~~R---------~~il~~---~~~--~--~~~~ 560 (713)
++.||||+|... .|+++++. |||..+. ++.|+.+.- .+.++. +.+ . ..++
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls 416 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELT 416 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEEC
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeC
Confidence 578999999765 88999999 9997543 566665431 122222 222 1 1122
Q ss_pred ccccHHHHH-----------H------hCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHhhhcccc
Q psy6523 561 RDIRFELLA-----------R------LCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVARCTKI 617 (713)
Q Consensus 561 ~~~~~~~la-----------~------~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~~~~~~~ 617 (713)
++ ..+.|. . ..-|.|++.+.++++-|...|.-+.+..|+.+|+.+|++=+..+...
T Consensus 417 ~e-a~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 417 EE-ARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 11 111111 0 24589999999999999999999999999999999999866555443
No 210
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=97.40 E-value=0.00016 Score=76.39 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=66.9
Q ss_pred cCCchhhhhhc---cCceeeeeeeech-hhHHhhcccccCCCC------CCceEEEEccccCCcccccceEEEEeeEEee
Q psy6523 203 NEYPWVVALEQ---AGKFFCGGTLISD-RYVLTAAHCVRSSKR------QKDLIVVISEHNRATVYETQIETRRVVKVLT 272 (713)
Q Consensus 203 ~~~P~~~~l~e---~~~~~cggslI~~-r~vltaa~c~~~~~~------~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~ 272 (713)
...|+++.+.- .....|+|.+|++ .||||++||+..... ...+.|.++... .. ..+++.
T Consensus 14 ~~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~----------~~-~a~vv~ 82 (324)
T 1y8t_A 14 KVVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGR----------TA-PFTVVG 82 (324)
T ss_dssp HHGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTCC----------EE-CEEEEE
T ss_pred HhcCcEEEEEEEccCCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCCC----------EE-EEEEEE
Confidence 34688887764 2457899999997 799999999976431 124555554211 11 122332
Q ss_pred CCCCCcCCCCCCccceEEEecCCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 273 HPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 273 h~~~~~~~~~~~~~diall~L~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
|+ ..+|||||++..+ ..+.+++++.......+..+.+.||..
T Consensus 83 ---~d------~~~DlAllkl~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~ 124 (324)
T 1y8t_A 83 ---AD------PTSDIAVVRVQGV----SGLTPISLGSSSDLRVGQPVLAIGSPL 124 (324)
T ss_dssp ---CC------TTTTEEEEEECSC----CSCCCCEECCSTTCCTTCEEEEEECGG
T ss_pred ---eC------CCCCEEEEEECCC----CCCceEEecCcccCCCCCEEEEEEcCC
Confidence 22 3689999999987 457889998765555788899999943
No 211
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...
Probab=97.40 E-value=7.9e-05 Score=71.95 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=73.6
Q ss_pred eeee-eeeec---hhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEe
Q psy6523 217 FFCG-GTLIS---DRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLK 292 (713)
Q Consensus 217 ~~cg-gslI~---~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~ 292 (713)
..|+ |.++. ++|+|||+||+.... .+ .+...+. . .+..+ .+.+| .++||||++
T Consensus 12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~~~---~~--~v~~~~~------~----~~g~~-~~~~~-------~~~DiAll~ 68 (185)
T 2qa9_E 12 GRCSLGFNVRSGSTYYFLTAGHCTDGAT---TW--WANSART------T----VLGTT-SGSSF-------PNNDYGIVR 68 (185)
T ss_dssp CEEECCEEEEETTEEEEEECHHHHTTCS---EE--ESSTTSC------S----EEEEE-EEEEC-------SBSCEEEEE
T ss_pred CcEeccEEEEECCceEEEECcccCCCCC---cE--EecCCCc------e----EeEEE-ecccc-------CCCCEEEEE
Confidence 5687 77765 579999999987542 11 1111100 0 01111 11111 358999999
Q ss_pred cCC-CCCCCCCcccccCCCCCCccCCCceEEEeeccccCCCCcchhcccccccccChhhhhcCCCccccccCccccc
Q psy6523 293 LDT-PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368 (713)
Q Consensus 293 L~~-p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cA 368 (713)
|.. ++.++..++|+|++.......+..+.+.||+.. .....|+...+++ ....|.. + ..+...|+|+
T Consensus 69 l~~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~~---~-~~~~~~~~ca 136 (185)
T 2qa9_E 69 YTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGDV---V-YGMIRTNVCA 136 (185)
T ss_dssp ECCSSSCCCCEETTEECCEECCCCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTCE---E-EEEEEESCCC
T ss_pred ecCCCccccCccceeeeCCcccCCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCCE---E-eceEEecccC
Confidence 998 999999999999986555567888999999642 2344566666664 2223321 1 1234578886
No 212
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.31 E-value=0.00017 Score=94.29 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeeccccee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 168 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~s 168 (713)
..|++++||+|||||.+++++|..+|.+++.+++++-+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld 683 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD 683 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC
Confidence 468999999999999999999999999999999876553
No 213
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.28 E-value=0.00039 Score=75.27 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.1
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccccee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 168 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s 168 (713)
....||++|++|||||++|+++.... +.+|+.|+++.+..
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 201 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCH
Confidence 34568999999999999999998765 47899999877643
No 214
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=97.27 E-value=0.00023 Score=71.36 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=57.0
Q ss_pred eeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCC
Q psy6523 217 FFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDT 295 (713)
Q Consensus 217 ~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~ 295 (713)
..|+|.+|+++ ||||++||+... ..+.|.+... . ......+..+ .++|||||++..
T Consensus 63 ~~GSG~iI~~~G~VLTaaHvv~~~---~~i~V~~~~g--------~--~~~a~v~~~d----------~~~DlAlL~l~~ 119 (231)
T 3tjo_A 63 ASGSGFIVSEDGLIVTNAHVVTNK---HRVKVELKNG--------A--TYEAKIKDVD----------EKADIALIKIDH 119 (231)
T ss_dssp EEEEEEECSTTCEEEEETTTCCSS---SEEEEECTTS--------C--EEEEEEEEEE----------TTTTEEEEECCC
T ss_pred ceEEEEEEeCCCEEEEchhcccCC---ceEEEEcCCC--------C--EEEEEEEEec----------CCCCEEEEEecC
Confidence 57999999998 999999999652 2334443221 1 1111112222 257999999987
Q ss_pred CCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 296 PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 296 p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
+. .+.+++++.......+..+.+.||+..
T Consensus 120 ~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g 148 (231)
T 3tjo_A 120 QG----KLPVLLLGRSSELRPGEFVVAIGSPFS 148 (231)
T ss_dssp SS----CCCCCCBCCGGGCCTTCEEEEEEEEET
T ss_pred CC----CCCceecCCcCCCCCCCEEEEEECCCC
Confidence 63 456778876666667888999999853
No 215
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=97.24 E-value=0.00019 Score=72.29 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=60.0
Q ss_pred ceeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecC
Q psy6523 216 KFFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLD 294 (713)
Q Consensus 216 ~~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~ 294 (713)
...|+|.+|+++ ||||++||+.... .+.|.++.. . ... .+++. + ...+|||||++.
T Consensus 55 ~~~gsG~iI~~~g~ILTnaHvv~~~~---~i~V~~~~g--------~--~~~-a~vv~---~------d~~~DlAllkl~ 111 (239)
T 1l1j_A 55 ASLGSGFIFDPEGYILTNYHVVGGAD---NITVTMLDG--------S--KYD-AEYIG---G------DEELDIAVIKIK 111 (239)
T ss_dssp EEEEEEEEEETTTEEEEEHHHHSSCS---SCEEECTTS--------C--EEE-BCCCE---E------ETTTTEEEEEBC
T ss_pred CceEEEEEEeCCCEEEEChHHhCCCC---EEEEEECCC--------C--EEE-EEEEE---E------cCCCCEEEEEEc
Confidence 578999999985 9999999997532 345554421 1 111 11111 1 246899999999
Q ss_pred CCCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 295 TPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 295 ~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
.+. ..+.+++|+.....-.+..+.+.||+..
T Consensus 112 ~~~---~~~~~~~l~~s~~~~~G~~v~~iG~p~g 142 (239)
T 1l1j_A 112 ASD---KKFPYLEFGDSDKVKIGEWAIAIGNPLG 142 (239)
T ss_dssp CSS---SCCCCCEECCGGGCCTTCEEEEEECTTS
T ss_pred CCC---CCCceEEecCccCCccccEEEEEECCCC
Confidence 876 5678899987655556788999999864
No 216
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.15 E-value=0.00029 Score=75.13 Aligned_cols=88 Identities=22% Similarity=0.323 Sum_probs=59.6
Q ss_pred eeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCC
Q psy6523 217 FFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDT 295 (713)
Q Consensus 217 ~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~ 295 (713)
..|+|.+|+++ ||||++||+.... .+.|.+... . .... +++.+ ...+|||||++..
T Consensus 53 g~GSG~iI~~~G~IlT~aHvv~~~~---~i~V~~~~g--------~--~~~a-~~v~~---------d~~~DlAlLkl~~ 109 (348)
T 3qo6_A 53 GSGSGFVWDKQGHIVTNYHVIRGAS---DLRVTLADQ--------T--TFDA-KVVGF---------DQDKDVAVLRIDA 109 (348)
T ss_dssp EEEEEEEEETTTEEEECHHHHTTCS---EEEEECTTS--------C--EEEE-EEEEE---------EGGGTEEEEECCC
T ss_pred ceEEEEEEeCCCEEEECHHHhCCCc---EEEEEECCC--------C--EEEE-EEEEE---------cCcCCEEEEEEcC
Confidence 46899999998 9999999997532 333433211 1 1111 12111 1257999999988
Q ss_pred CCCCCCCcccccCCCCCCccCCCceEEEeeccccC
Q psy6523 296 PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE 330 (713)
Q Consensus 296 p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~~ 330 (713)
| ...+++++++.......+..+.+.||+....
T Consensus 110 ~---~~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~ 141 (348)
T 3qo6_A 110 P---KNKLRPIPVGVSADLLVGQKVFAIGNPFGLD 141 (348)
T ss_dssp C---GGGCCCCCBCCSTTCCTTCEEEEEECGGGCT
T ss_pred C---CCCceeEEecCcccCCCCCEEEEEECCCCCC
Confidence 7 3467889998776666788999999986543
No 217
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.13 E-value=0.00077 Score=88.91 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=39.8
Q ss_pred CCeEEEEecCCC-----CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhcc
Q psy6523 508 GNIKVLMATNRP-----DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS 556 (713)
Q Consensus 508 ~~v~vi~aTN~p-----~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~ 556 (713)
.++.+|+|.|.| ..|+|+|+| ||-. ++++.|+.++...|+..++..
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHHH
Confidence 357899999988 579999999 9977 899999999999998877653
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00022 Score=69.44 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.+.+.+-|+|.||||||||+++++||..++++++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3566778999999999999999999999999887654
No 219
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.05 E-value=0.00035 Score=64.92 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccce
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELV 167 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~ 167 (713)
+...++|+||+|+|||+|++++++.. |..++.++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 56789999999999999999999976 6666666665544
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00041 Score=65.92 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=31.9
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++-|+|.||||+|||+++++||..++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 4568999999999999999999999999887765443
No 221
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=96.99 E-value=0.0013 Score=65.93 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=56.5
Q ss_pred eeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCC
Q psy6523 217 FFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDT 295 (713)
Q Consensus 217 ~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~ 295 (713)
..|+|.+|+++ ||||++||+.... .+.|.... .. ......+..| ..+|||||++..
T Consensus 53 ~~GsG~ii~~~G~IlTaaHvv~~~~---~~~V~~~~--------g~--~~~a~vv~~d----------~~~DlAll~l~~ 109 (237)
T 3lgi_A 53 TLGSGVIMDQRGYIITNKHVINDAD---QIIVALQD--------GR--VFEALLVGSD----------SLTDLAVLKINA 109 (237)
T ss_dssp EEEEEEEEETTTEEEEEHHHHTTCS---EEEEECTT--------SC--EEEEEEEEEE----------TTTTEEEEECCC
T ss_pred eEEEEEEEeCCCEEEEeeeecCCCC---EEEEEeCC--------CC--EEEEEEEEEc----------CCCCEEEEEecC
Confidence 47899999998 9999999997542 33333321 11 1111222222 247999999987
Q ss_pred CCCCCCCcccccCCCCCCccCCCceEEEeeccc
Q psy6523 296 PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 296 p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~ 328 (713)
+. .+.+++++.......+..+.+.||+..
T Consensus 110 ~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~ 138 (237)
T 3lgi_A 110 TG----GLPTIPINARRVPHIGDVVLAIGNPYN 138 (237)
T ss_dssp SS----CCCCCCCCTTCCCCTTBEEEEEECGGG
T ss_pred CC----CCceEeccCcccCCCCCEEEEEECCCC
Confidence 65 356778876555567788899999864
No 222
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.95 E-value=0.0004 Score=66.47 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=29.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++.|+|.||||||||++++.+|..+|++++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3567999999999999999999999999888653
No 223
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.90 E-value=0.00044 Score=66.50 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+..++-|+|.||||+|||++++.+|..++.+++..
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 455677899999999999999999999999877663
No 224
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A
Probab=96.88 E-value=0.00021 Score=68.72 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=56.1
Q ss_pred eeee-eeeec---hhhHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEe
Q psy6523 217 FFCG-GTLIS---DRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLK 292 (713)
Q Consensus 217 ~~cg-gslI~---~r~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~ 292 (713)
..|+ |.+|+ ++|||||+||+.... .+.++..+ .+. ..++||||++
T Consensus 12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~~-----~~~~G~~~-------------------~~~-------~~~~DiAlik 60 (181)
T 2sga_A 12 SRCSLGFNVSVNGVAHALTAGHCTNISA-----SWSIGTRT-------------------GTS-------FPNNDYGIIR 60 (181)
T ss_dssp EEEECCEEEEETTEEEEEECHHHHTTCS-----EETTEEEE-------------------EEE-------CSBSCEEEEE
T ss_pred CcEeccEEEEECCceEEEECcccCCCCC-----ceeeccee-------------------CCc-------CCCCCEEEEE
Confidence 4687 88987 789999999985431 12223221 011 1357999999
Q ss_pred cCCCCCCCCCcccc----cCCC-CCCccCCCceEEEeeccc
Q psy6523 293 LDTPLEFKPTVSPV----CLPQ-LGEKFTQRTGTVVGWGRV 328 (713)
Q Consensus 293 L~~p~~~~~~i~~i----cl~~-~~~~~~~~~~~v~GwG~~ 328 (713)
|..+..+...++++ +++. ......+..+++.||+..
T Consensus 61 l~~~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~ 101 (181)
T 2sga_A 61 HSNPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTG 101 (181)
T ss_dssp ESCGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTE
T ss_pred ccCCCcccceEEecCCcceeecccccCCCCCEEEEeecCCC
Confidence 99998888889988 7764 344456778888888754
No 225
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.78 E-value=0.00068 Score=65.15 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
+.++.-+.|.||||+|||++++.||+..+...+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 5566678999999999999999999988777777776554
No 226
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.78 E-value=0.00067 Score=64.69 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=30.6
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
..++.|+|.||||+|||++++++|..++.+++.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 34567999999999999999999999998887654
No 227
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=96.76 E-value=0.0013 Score=69.42 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=58.8
Q ss_pred ceeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecC
Q psy6523 216 KFFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLD 294 (713)
Q Consensus 216 ~~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~ 294 (713)
...|+|.+|+++ ||||++||+.... .+.|.++. .. ... .+++. + ..++|+|||++.
T Consensus 46 ~~~gsG~iI~~~G~IlT~aHvv~~~~---~i~V~~~~--------g~--~~~-a~v~~---~------d~~~DlAllkl~ 102 (325)
T 1lcy_A 46 ISNGSGFVVAADGLIVTNAHVVADRR---RVRVRLLS--------GD--TYE-AVVTA---V------DPVADIATLRIQ 102 (325)
T ss_dssp EEEEEEEEEETTTEEEECHHHHTTCS---EEEEECTT--------SC--EEE-EEEEE---E------ETTTTEEEEECC
T ss_pred cccEEEEEEeCCCEEEECHHHcCCCC---EEEEEeCC--------CC--EEE-EEEEE---E------CCCCCEEEEEEc
Confidence 368999999998 9999999997642 34444432 11 111 12221 1 236899999998
Q ss_pred CCCCCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 295 TPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 295 ~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
.+. .+.+++++.......+..+.+.||+...
T Consensus 103 ~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~ 133 (325)
T 1lcy_A 103 TKE----PLPTLPLGRSADVRQGEFVVAMGSPFAL 133 (325)
T ss_dssp CSS----CCCCCCBCCGGGCCTTCEEEECCCTTSS
T ss_pred CCC----CCceEEecccccCCCCCEEEEEECCCCC
Confidence 763 4678888765555567888899999754
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.73 E-value=0.00075 Score=64.79 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc-cCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR-TDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e-~~~~~~~V~ 162 (713)
+.-|+|.|+||||||++++.+|.. +|++++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999998 798887654
No 229
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.68 E-value=0.00082 Score=72.24 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=32.7
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
+++++++.++|+||||||||++++++|+..+..++.+.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~ 201 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 201 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEe
Confidence 47889999999999999999999999998776655543
No 230
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.64 E-value=0.0012 Score=62.25 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=27.1
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
+.-|.|.||||+|||++++.||+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3568999999999999999999999976654
No 231
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.63 E-value=0.00099 Score=63.22 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=27.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+-|+|.||||+|||+++++||..++++++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3589999999999999999999999888753
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.00038 Score=72.68 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=29.7
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhccCce--eEEe
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRTDAC--FIRV 161 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~--~~~V 161 (713)
-|+.+.+.+|++||||||||+||.++|.+.|.+ |+.+
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 367777788999999999999999999875433 5554
No 233
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.55 E-value=0.001 Score=63.60 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=27.8
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|+|.|+||+|||++|+.||..+|++++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999887643
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.54 E-value=0.0011 Score=62.16 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=27.2
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|.|.||||+|||++++.||..++++++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876543
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.52 E-value=0.0025 Score=65.96 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=31.6
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
..|.-++|.||||+|||++++.++.+.+..++.|+...+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456779999999999999999999988655677775443
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.52 E-value=0.0039 Score=68.91 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=87.9
Q ss_pred HHHHhhhhcccCCCCCCCeEEEEe---------cC---CCCCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCC
Q psy6523 492 EVVETPLLHLDGFDPRGNIKVLMA---------TN---RPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSV 559 (713)
Q Consensus 492 ~~v~~lL~~~d~~~~~~~v~vi~a---------TN---~p~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~ 559 (713)
...+.||..|+.-. ..+++++| |+ .|+.|+|.++. ||.. +.++.++.++..+||+..+.....
T Consensus 310 ~a~~aLlk~lEe~~--~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~ 384 (456)
T 2c9o_A 310 ECFTYLHRALESSI--APIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGI 384 (456)
T ss_dssp HHHHHHHHHTTSTT--CCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccC--CCEEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCC
Confidence 67888898888543 34544454 32 28899999999 9987 599999999999999987653332
Q ss_pred c-ccccHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHhHh
Q psy6523 560 E-RDIRFELLARLC-PNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611 (713)
Q Consensus 560 ~-~~~~~~~la~~t-~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~~~ 611 (713)
. ++-.+..++..+ .| ++...-.+++.|...|..++...|+.+|+.+++.-+
T Consensus 385 ~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 385 NISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp CBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 2 233466777776 55 888899999999999988888899999999998754
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.49 E-value=0.0017 Score=65.84 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=32.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
...|.-++|.||||+|||++++.|+..++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4567789999999999999999999999866666665444
No 238
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=96.49 E-value=0.0043 Score=65.52 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=55.7
Q ss_pred eeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecCC
Q psy6523 217 FFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDT 295 (713)
Q Consensus 217 ~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~~ 295 (713)
..++|.+|+++ ||||++||+... ..+.|.++.. .......+..|+ ++|||||++..
T Consensus 46 ~~GSG~iI~~~G~ILTaaHvv~~~---~~i~V~~~~g----------~~~~a~~~~~d~----------~~DlAlL~l~~ 102 (332)
T 3num_A 46 ASGSGFIVSEDGLIVTNAHVVTNK---HRVKVELKNG----------ATYEAKIKDVDE----------KADIALIKIDH 102 (332)
T ss_dssp EEEEEEEEETTTEEEECTTTCCTT---SEEEEEETTS----------CEEEEEEEEEET----------TTTEEEEEECC
T ss_pred eeEEEEEEeCCCEEEEChHHcCCC---CEEEEEECCC----------CEEEEEEEEecC----------CCCeEEEEEcC
Confidence 57899999998 999999999753 2344444321 112222233332 47999999988
Q ss_pred CCCCCCCcccccCCCCCCccCCCceEEEeecccc
Q psy6523 296 PLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVE 329 (713)
Q Consensus 296 p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~~~ 329 (713)
+. .+.+++++.......+..+.+.||+...
T Consensus 103 ~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g~ 132 (332)
T 3num_A 103 QG----KLPVLLLGRSSELRPGEFVVAIGSPFSL 132 (332)
T ss_dssp SS----CCCCCCBCCTTSCCTTCEEEEECC----
T ss_pred CC----CCceeeecCcccCCCCCEEEEEECCCCC
Confidence 73 4567778766665678889999998643
No 239
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=96.46 E-value=0.0033 Score=65.98 Aligned_cols=85 Identities=13% Similarity=0.256 Sum_probs=57.5
Q ss_pred ceeeeeeeechh-hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEecC
Q psy6523 216 KFFCGGTLISDR-YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLD 294 (713)
Q Consensus 216 ~~~cggslI~~r-~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L~ 294 (713)
...|+|.+|+++ ||||++||+.... .+.|.++.. .. . ..+++. + ...+|+||+++.
T Consensus 41 ~~~gsG~iI~~~G~IlT~aHvv~~~~---~i~V~~~~g--------~~--~-~a~v~~---~------d~~~DlAllk~~ 97 (318)
T 1te0_A 41 RTLGSGVIMDQRGYIITNKHVINDAD---QIIVALQDG--------RV--F-EALLVG---S------DSLTDLAVLIIK 97 (318)
T ss_dssp EEEEEEEECSTTCEEEEEHHHHTTCS---EEEEECTTS--------CE--E-EEEEEE---E------ETTTTEEEEECC
T ss_pred CccEEEEEEeCCCEEEECHHHcCCCC---EEEEEeCCC--------CE--E-EEEEEE---e------CCCceEEEEEEe
Confidence 478999999998 9999999997643 344443321 11 1 122322 1 136899999998
Q ss_pred CCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 295 TPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 295 ~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
.+ ..+.+++++.......+..+.+.||..
T Consensus 98 ~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~ 126 (318)
T 1te0_A 98 AT----GGLPTIPINARRVPHIGDVVLAIGNPY 126 (318)
T ss_dssp CS----SCCCCCCCCTTCCCCTTCEEEEECCCS
T ss_pred CC----CCCceEEeeCccCCCCCCEEEEEEcCC
Confidence 77 356788888655556788889999643
No 240
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.43 E-value=0.0013 Score=65.34 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=28.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
..+.-|+|.||||+|||++++.||..++.+++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4567799999999999999999999999887754
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.0016 Score=63.34 Aligned_cols=32 Identities=38% Similarity=0.499 Sum_probs=28.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.-|+|.||||+|||++|+.||..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45589999999999999999999999887664
No 242
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.39 E-value=0.0017 Score=61.14 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
...|+|.|+||||||++++.||..+|++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45789999999999999999999999988764
No 243
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.38 E-value=0.0016 Score=61.56 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=25.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhh-ccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVAN-RTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~-e~~~~~~~ 160 (713)
|+-|++.||||+|||++|+.++. ..++.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 45689999999999999999998 56665554
No 244
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.37 E-value=0.0016 Score=64.40 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=31.5
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
+..++-|+|.||||+||++.|+.||..+|++.+ +..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHH
Confidence 456788999999999999999999999987654 444444
No 245
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.36 E-value=0.0017 Score=65.90 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=28.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
-+++.||||+|||++|++||...+..++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877654
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.35 E-value=0.0014 Score=63.07 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++.-|.|.||||+|||++++.||..++.+++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 34567999999999999999999999998877543
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0018 Score=62.13 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=27.9
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.-|+|.|+||+|||++|+.+|..++++++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 55689999999999999999999999877543
No 248
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.35 E-value=0.002 Score=63.51 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=28.9
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
++.-|+|.||||+|||++++.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356789999999999999999999999877664
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.34 E-value=0.0016 Score=60.98 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=26.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
-|+|.||||+|||++|+.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8899987765
No 250
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.33 E-value=0.0022 Score=60.41 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+-|+|.|+||+|||++++.+|..+|++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999887753
No 251
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.32 E-value=0.0016 Score=61.88 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
+.-|+|.|+||+|||++|+.+|..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999877
No 252
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.28 E-value=0.002 Score=61.71 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.++-|+|.|+||+|||++++.+|..++++++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 356789999999999999999999999877654
No 253
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.27 E-value=0.0036 Score=82.78 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
..|..++||+|||||.+++.+|..+|.+++.+++++-+
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~ 641 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF 641 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 45778999999999999999999999999999986644
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.25 E-value=0.0018 Score=61.85 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.-|+|.||||+|||++++.+|..+|++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4588999999999999999999998776543
No 255
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.25 E-value=0.0026 Score=63.49 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=28.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+.-|+|.||||+|||++|+.||..++++++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45699999999999999999999999877664
No 256
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.21 E-value=0.0027 Score=61.68 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=27.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
++-|+|.||||+|||++++.||..+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877665
No 257
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.19 E-value=0.0021 Score=63.18 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+|.||||+|||++|+.||.+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999998877665
No 258
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.19 E-value=0.0022 Score=64.60 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=29.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.+|.-|+|.||||+|||++|+.|+..++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4567799999999999999999999998877654
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.18 E-value=0.0021 Score=63.42 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+.-|+|.||||+|||++++.||..++++++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34589999999999999999999999887765
No 260
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.15 E-value=0.0018 Score=64.01 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.6
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.+.-|+|.||||+|||++++.||..++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 456799999999999999999999999876654
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.14 E-value=0.0031 Score=61.24 Aligned_cols=32 Identities=41% Similarity=0.635 Sum_probs=26.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
.++.-+.|.||+|+|||++++.||+.+|..++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 34566889999999999999999999876554
No 262
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.12 E-value=0.0026 Score=61.74 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++-|+|.||||+|||++++.||..+|.+++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3456899999999999999999999998776643
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.11 E-value=0.0021 Score=61.43 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC-----ceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD-----ACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~-----~~~~~ 160 (713)
+.-|+|.||||+|||++++.||..++ .+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 34689999999999999999999887 66654
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.11 E-value=0.0022 Score=62.85 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=26.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+|.||||+|||++|+.+|..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999877655
No 265
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.10 E-value=0.0023 Score=61.63 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.++-|.|.||||+|||++|+.||..++.+++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 3567999999999999999999999997766543
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.07 E-value=0.0032 Score=59.51 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=26.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
..-+.|.||||+|||++++.+++.+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458899999999999999999988866554
No 267
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.06 E-value=0.0031 Score=59.03 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=26.8
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
-|+|.|+||+|||++++.+|..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 378999999999999999999999887754
No 268
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.05 E-value=0.0027 Score=64.61 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeecccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIGSEL 166 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~~~i 166 (713)
+.-|+|.|+||+|||++|+.+|.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 7888876665443
No 269
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.98 E-value=0.0035 Score=61.45 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=27.2
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeecccce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELV 167 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i~ 167 (713)
++|.||||+||++.|+-||...|++.+ +..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 688999999999999999999987655 444444
No 270
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.94 E-value=0.0039 Score=65.33 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=32.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
++.|+|.||+|+|||++++.||..++..++.++.-.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 4578999999999999999999999998888865433
No 271
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.89 E-value=0.006 Score=59.63 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=30.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
|+++..-++++||||+|||++++.+|...+.+++.++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 57788889999999999999999999855555555543
No 272
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.73 E-value=0.004 Score=61.15 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=26.3
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+|.||||+|||++++.||..++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999998877665
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.68 E-value=0.0076 Score=58.24 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=28.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc-CceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT-DACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~-~~~~~~V~ 162 (713)
.++-|.|.||||+|||++++.||..+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35568999999999999999999998 57777654
No 274
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.67 E-value=0.0058 Score=57.99 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
++.-+.|.|++|+|||++++.++..+ |.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 34557899999999999999999987 8888877643
No 275
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.64 E-value=0.0059 Score=60.45 Aligned_cols=29 Identities=31% Similarity=0.598 Sum_probs=25.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|+|.||||+|||++++.||..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998766554
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.62 E-value=0.007 Score=59.63 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.6
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.-|.|.||+|||||++++.+|+.+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999977664
No 277
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.62 E-value=0.0046 Score=62.53 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
.+-|.|.||+|+|||++++.||..+|++|+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 567999999999999999999999999888743
No 278
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.60 E-value=0.0068 Score=60.52 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=27.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
|.-+.+.||||+|||++++.||..++++++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 5568999999999999999999999987654
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.58 E-value=0.0025 Score=67.39 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=29.1
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
..++|.||||+|||+++++||+.++.+|+.++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a 57 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLS 57 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecc
Confidence 359999999999999999999999999977443
No 280
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.57 E-value=0.031 Score=58.92 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHhhhhcccCCCCCCCeEEEEecCCC------CCccccccCCCCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHH
Q psy6523 494 VETPLLHLDGFDPRGNIKVLMATNRP------DTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFE 566 (713)
Q Consensus 494 v~~lL~~~d~~~~~~~v~vi~aTN~p------~~lD~Al~RpGRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~ 566 (713)
.+.|+..++.. ..++++|.+|+.+ ..+-+++.. |. ..+.+..|+..+....++..+...++. ++-.+.
T Consensus 94 ~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~ 168 (343)
T 1jr3_D 94 NEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQ 168 (343)
T ss_dssp HHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34455556543 2345555555554 357778887 55 578999999999998888888776654 333466
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHh
Q psy6523 567 LLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609 (713)
Q Consensus 567 ~la~~t~g~sgadi~~l~~~A~~~a~~~~~~~v~~~d~~~a~~ 609 (713)
.|++.+.| +-.++.+.+...+..+ ....|+.+++.+.+.
T Consensus 169 ~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 169 VLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVN 207 (343)
T ss_dssp HHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHH
T ss_pred HHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHh
Confidence 67766654 4444444444443322 234677777666554
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.55 E-value=0.0067 Score=60.92 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=27.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.|.-+.|.||||+|||++++.||..+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 36679999999999999999999888875543
No 282
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.52 E-value=0.0069 Score=58.70 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=25.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|.+.||+|+|||++++.||+ .|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887776543
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.51 E-value=0.0044 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhccC
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-|+|.||||+|||++++.||..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999776
No 284
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.48 E-value=0.0065 Score=58.91 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=27.8
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
.++.-+.|.||+|||||+++++||+.+ |...+.+++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 445668899999999999999999987 544334444
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.48 E-value=0.0069 Score=58.39 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=24.7
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
|.|.|+||+|||++++.||..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 789999999999999999999998655
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.46 E-value=0.0042 Score=79.03 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSEL 166 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i 166 (713)
|+++++++|||||||||||+||.++|.+. |.....++..+.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 48999999999999999999999998864 444555554443
No 287
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.46 E-value=0.008 Score=57.44 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=26.6
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
|.|.|+||+|||++++.+|..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 88877654
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.41 E-value=0.0083 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=24.4
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
-|.|.||+|+|||++++.+|+ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 477899999999999999998 7877664
No 289
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.38 E-value=0.0093 Score=57.20 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=25.7
Q ss_pred EEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
|.|.||+|+|||++++.++..+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999988 88887554
No 290
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.37 E-value=0.016 Score=60.92 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhccCCCcccccHHHHHHhCCCCCHHHHHHHHHH
Q psy6523 530 GRLDRKVEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTE 586 (713)
Q Consensus 530 GRfd~~i~i~~P~~~~R~~il~~~~~~~~~~~~~~~~~la~~t~g~sgadi~~l~~~ 586 (713)
||+...+.++..+.++-.++++..+.......+ +...+...|.|+.. -+..++..
T Consensus 198 ~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 198 GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 577889999999999999999887653333222 23788889998754 35555543
No 291
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.33 E-value=0.012 Score=58.48 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=25.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+++..-++|+||||+|||+|++.+|..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 6778888999999999999999999984
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.32 E-value=0.0044 Score=60.39 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.++-|.|.|+||+|||++++.||..++.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 356689999999999999999999887765554
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.28 E-value=0.0088 Score=57.92 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|.+.||+|+|||++++.+|..+|++++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999998877643
No 294
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.17 E-value=0.0099 Score=63.20 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=31.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~ 165 (713)
|+++.+-++++||||+|||+|+..+|... +..++.|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 57778889999999999999999999863 44555565543
No 295
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.16 E-value=0.0052 Score=59.89 Aligned_cols=33 Identities=21% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
.+.-|.|.|+||+|||++++.||..++...+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 456689999999999999999999876554443
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.15 E-value=0.011 Score=57.61 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=28.2
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc-CceeEEee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT-DACFIRVI 162 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~-~~~~~~V~ 162 (713)
.++.-|.+.||||+|||++++.|++.. ++.++..+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 445567899999999999999999987 66665543
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.13 E-value=0.011 Score=56.95 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+.-|.|.|++|+|||++++.||.. |++++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 456889999999999999999998 8777653
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.04 E-value=0.014 Score=56.63 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
+.-|+|.||||+|||++++.||..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3458899999999999999999988763
No 299
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.98 E-value=0.014 Score=61.39 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
++-|+|.||+|+|||.|+..||..++..+|..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 34688999999999999999999999888776643
No 300
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.97 E-value=0.013 Score=56.63 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=27.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-|.|.|++|||||++++.+|..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4778999999999999999998898887643
No 301
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.89 E-value=0.016 Score=60.15 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=31.4
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeecccc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~i 166 (713)
.|+-+++.||+|+|||.||..+|...+..+++++.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 35678899999999999999999999988777655433
No 302
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.88 E-value=0.011 Score=58.01 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=24.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+.+..-++|+||||+|||+|++.+|..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5777778999999999999999999964
No 303
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.87 E-value=0.013 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=22.0
Q ss_pred EEeeCCCCCchhHHHHHHhhccCc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~ 156 (713)
+.|.||+|+|||+|++.|++..++
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999998863
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.87 E-value=0.013 Score=58.97 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
..|.-|.|.||||+|||++|+.||..++.++
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 3455689999999999999999999999874
No 305
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.86 E-value=0.017 Score=56.61 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
+.-|.|.|++|+|||++++.||. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45688999999999999999998 88776654
No 306
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.85 E-value=0.015 Score=60.97 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|+++..-++++||||+|||.+|..+|...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 67888889999999999999999999764
No 307
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.85 E-value=0.017 Score=56.52 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=28.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
|.-|.|.|++|+|||++++.+|..+|++++...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 446899999999999999999999998877643
No 308
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.84 E-value=0.017 Score=57.54 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.++.-|.|.|++|+|||++++.+|..+|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 344568899999999999999999999987765
No 309
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.83 E-value=0.0065 Score=64.79 Aligned_cols=41 Identities=27% Similarity=0.480 Sum_probs=25.5
Q ss_pred CCCccceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 673 IDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 673 ~~Ps~~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
+..........+.|+++|+||||++++|++|+++|.||++|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~ 73 (355)
T 2qp9_X 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73 (355)
T ss_dssp --------------CCCGGGSCCGGGHHHHHHHHTHHHHHC
T ss_pred HHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 34444455566789999999999999999999999999754
No 310
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.78 E-value=0.016 Score=63.22 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=27.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.|.-|+|.||||+|||++|+.++..+++.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 45678999999999999999999999876654
No 311
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.75 E-value=0.016 Score=56.22 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.+++-++|.||||+|||++++.|+...+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356778899999999999999999998774
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.73 E-value=0.016 Score=56.03 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.++.-+.|.||+|+|||++++.|++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556678899999999999999999876
No 313
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=94.65 E-value=0.038 Score=55.53 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=50.6
Q ss_pred ceeeeeeeechh--hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEec
Q psy6523 216 KFFCGGTLISDR--YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKL 293 (713)
Q Consensus 216 ~~~cggslI~~r--~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L 293 (713)
...++|.+|+++ ||||++||+.... .+.|.+.. . .......+..+ ..+|||||++
T Consensus 62 ~~~GSGfiI~~~~G~IlTnaHvv~~a~---~i~V~~~d--------g--~~~~a~vv~~d----------~~~DlAlLkv 118 (245)
T 3sti_A 62 EGLGSGVIINASKGYVLTNNHVINQAQ---KISIQLND--------G--REFDAKLIGSD----------DQSDIALLQI 118 (245)
T ss_dssp --CCEEEEEETTTTEEEECGGGC-------CEEEECTT--------S--CEEEEEEEEEE----------TTTTEEEEEE
T ss_pred cceEEEEEEeCCCCEEEEcHHHhCCCC---EEEEEECC--------C--CEEEEEEEEec----------CCCCEEEEEe
Confidence 357899999997 9999999997542 23333321 1 11111122222 2579999999
Q ss_pred CCCCCCCCCcccccCCCCCCccCCCceEEEeec
Q psy6523 294 DTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWG 326 (713)
Q Consensus 294 ~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG 326 (713)
..+. .+.++.+......-.+..+.+.||.
T Consensus 119 ~~~~----~~~~~~l~~s~~~~~G~~v~aiG~P 147 (245)
T 3sti_A 119 QNPS----KLTQIAIADSDKLRVGDFAVAVGNP 147 (245)
T ss_dssp SSCC----SCCCCCBCCGGGCCTTBEEEEEECG
T ss_pred ccCC----CCceeeecCcCCCCCCCEEEEEECC
Confidence 7653 3556777665555567788889975
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.65 E-value=0.018 Score=55.70 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=27.9
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
..++|++.||+|+|||.||.++|.... .++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 367899999999999999999998765 5555443
No 315
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.62 E-value=0.014 Score=55.56 Aligned_cols=36 Identities=33% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC---ceeEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD---ACFIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~---~~~~~V~~ 163 (713)
.++.-|+|.|+||+|||++++.+|..++ ..+..+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3456688999999999999999998764 33444443
No 316
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.62 E-value=0.011 Score=65.08 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=29.8
Q ss_pred ceeeeeecCCcccccccchHHHHHHHHHHHhcccCC
Q psy6523 678 TMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713 (713)
Q Consensus 678 ~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~~ 713 (713)
......+.|+++|+||||++++|++|+++|.||++|
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~ 156 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKF 156 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHC
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhC
Confidence 344556789999999999999999999999999764
No 317
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.58 E-value=0.016 Score=59.84 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.9
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc-CceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT-DACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~-~~~~~~V 161 (713)
|+-|+|.||||+|||++++.++... ++.++..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 3568999999999999999999863 6655543
No 318
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.57 E-value=0.02 Score=60.92 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-++++||||+|||+||..+|.+. +.+++.++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 67888899999999999999999998753 4556666653
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.51 E-value=0.024 Score=57.18 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
..-|-|.||+|+|||++++.||..+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3457899999999999999999999987664
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.49 E-value=0.025 Score=59.84 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+++..-++++||||+|||.||..+|..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6777777999999999999999999986
No 321
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.021 Score=56.73 Aligned_cols=38 Identities=37% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~ 163 (713)
|+++..-++++||||+|||+++..+|.. .+..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6788888999999999999998888764 3455555553
No 322
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.44 E-value=0.051 Score=56.82 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhccCCCc-ccccHHHHHHhCCCCCHHHHHHHHH
Q psy6523 530 GRLDRKVEFGLPDLEGRTHIFKIHARSMSVE-RDIRFELLARLCPNSTGAEIRSVCT 585 (713)
Q Consensus 530 GRfd~~i~i~~P~~~~R~~il~~~~~~~~~~-~~~~~~~la~~t~g~sgadi~~l~~ 585 (713)
||+...+.+++.+.++-.++++..+...... .+..+..+...|.|+-. -+..++.
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 5777899999999999999998877654332 23456778888988754 3555554
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.43 E-value=0.021 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.8
Q ss_pred cEEeeCCCCCchhHHHHHHhhccC
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.|.||+|+|||++++.||+..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 367899999999999999997543
No 324
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.37 E-value=0.019 Score=55.88 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=27.2
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
-|.+.||+|||||++++.||..+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999885
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.36 E-value=0.018 Score=57.43 Aligned_cols=27 Identities=41% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhh
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~ 152 (713)
|+++..-+.|.||+|+|||+|++.++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 678888899999999999999999983
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.35 E-value=0.014 Score=57.35 Aligned_cols=29 Identities=38% Similarity=0.446 Sum_probs=25.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|+++..-+.|.||+|+|||+|++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67777789999999999999999999743
No 327
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.28 E-value=0.023 Score=60.36 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-++++||||+|||+||..+|.+. +..++.++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67888889999999999999999998653 4445555543
No 328
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.17 E-value=0.023 Score=58.40 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.3
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
|.-|.|.|+||+|||++|+.+| +.|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 688776553
No 329
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.14 E-value=0.035 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.++.-+-+.||+|+|||+|++.|++...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445577899999999999999999764
No 330
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.14 E-value=0.028 Score=55.82 Aligned_cols=38 Identities=32% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc----cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR----TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e----~~~~~~~V~~ 163 (713)
|+++..-++++|+||+|||.+|.-+|.+ .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6888888999999999999999876543 3555555543
No 331
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.09 E-value=0.026 Score=60.24 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGS 164 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~ 164 (713)
|+++.+-++++||||+|||+||..+|.+. +.+++.++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67888889999999999999999988753 4556666654
No 332
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.02 E-value=0.032 Score=57.99 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=28.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeecc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~ 164 (713)
+-|++.||+|+|||.|+..+|...+..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578899999999999999999998776665543
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.93 E-value=0.031 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++-+.|.||+|+|||++++.|+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455688999999999999999998765
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.93 E-value=0.023 Score=55.49 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC----ceeEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD----ACFIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~----~~~~~V~~ 163 (713)
.++.-|+|.|+||+|||++++.++..++ .+++.+++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 3455688999999999999999998654 45666653
No 335
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.88 E-value=0.031 Score=58.85 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
+-|.+.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999976666554
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.79 E-value=0.032 Score=53.72 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+..-+.|.||+|+|||++++.|++..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344557899999999999999999875
No 337
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.76 E-value=0.033 Score=59.15 Aligned_cols=30 Identities=37% Similarity=0.382 Sum_probs=27.0
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.|+++.+-++|+||||+|||+|++.+|...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 477888889999999999999999999876
No 338
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.73 E-value=0.035 Score=52.72 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+-+.|.||+|+|||+|++.|++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999998653
No 339
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.71 E-value=0.036 Score=57.61 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc-----CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT-----DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~-----~~~~~~V~~~~ 165 (713)
|+++. -++++||||+|||+|+.-++.+. +..++.|+..+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 56665 57999999999999977776543 55566666544
No 340
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.70 E-value=0.041 Score=53.42 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCeEEEEecCCCCCccccccCCCCCCeEEEecCCCHH
Q psy6523 508 GNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLE 544 (713)
Q Consensus 508 ~~v~vi~aTN~p~~lD~Al~RpGRfd~~i~i~~P~~~ 544 (713)
..+-+|.+|+.++.||.++++ |++.++++..|...
T Consensus 122 ~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 122 QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccC
Confidence 345678888889999999998 99999999887543
No 341
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.56 E-value=0.03 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=23.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
++.-+-|.||+|+|||++++.|++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445578999999999999999999876
No 342
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.55 E-value=0.027 Score=57.55 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+.+..-++|+||||+|||+|++.+|..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 6777788999999999999999999974
No 343
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.53 E-value=0.034 Score=51.87 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=23.5
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||.|+|||+|++++++..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444558899999999999999999865
No 344
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.47 E-value=0.069 Score=55.41 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=24.9
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.++.-+.|.||+|+|||++++.||+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45667778899999999999999999854
No 345
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.45 E-value=0.036 Score=57.12 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.3
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+|+.+..-++|.||||+|||+|++.+|...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467888889999999999999999999753
No 346
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.37 E-value=0.029 Score=55.72 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.7
Q ss_pred EeeCCCCCchhHHHHHHhhccCceeEEe
Q psy6523 134 LLFGPPGTGKTLCARAVANRTDACFIRV 161 (713)
Q Consensus 134 LL~GPpGtGKT~la~alA~e~~~~~~~V 161 (713)
=|.||||+|||++|+.||..++++.+..
T Consensus 12 ~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 12 ILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3679999999999999999999877654
No 347
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.35 E-value=0.04 Score=57.65 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+++..-++++||||+|||.+|..+|.+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6777888999999999999999999875
No 348
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.32 E-value=0.026 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHh
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVA 151 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA 151 (713)
+.+..-+.|.||+|+|||+|++++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc
Confidence 4555668899999999999999965
No 349
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.25 E-value=0.076 Score=55.17 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 107 EVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 107 ~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+.+.+.+.... -..+...+++-+++.||+|+|||+++..+|..+
T Consensus 82 ~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 82 SLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp HHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34455666654332 112234567789999999999999999999754
No 350
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.24 E-value=0.038 Score=59.38 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEEeec
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~ 163 (713)
|++-|.+.||+|+|||.|+..||...+..++..+.
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 34567899999999999999999999877655543
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.23 E-value=0.08 Score=58.45 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 108 VQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 108 ~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+++.+..+|.....--.+.+.++.-+.|.||+|+|||++++.||+.+
T Consensus 271 l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 271 LKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp HHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44455555543322223345666778899999999999999999853
No 352
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.20 E-value=0.079 Score=56.29 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=25.4
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+.++.-+.|.||+|+|||++++.||+..
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345667778999999999999999999854
No 353
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.16 E-value=0.041 Score=54.46 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=27.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
.-|.+.|++|||||++++.||..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999999865
No 354
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.13 E-value=0.044 Score=56.89 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.3
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+++..-+.|.||+|+|||+|++.|++-.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 356777779999999999999999999876
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.06 E-value=0.047 Score=53.66 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+.+-+.|.||+|+|||+|++.|++..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555668899999999999999999865
No 356
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.99 E-value=0.046 Score=52.85 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=22.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.+-+.|.||+|+|||+|++.|++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3456789999999999999999998653
No 357
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.88 E-value=0.073 Score=61.35 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhh---ccCceeEEeec
Q psy6523 103 GGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN---RTDACFIRVIG 163 (713)
Q Consensus 103 G~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~---e~~~~~~~V~~ 163 (713)
++.+..++.+...+...+ -.|++||||||||..+-.+.. ..+..++.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~-----------~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKE-----------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp TCCHHHHHHHHHHHHCSS-----------EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCHHHHHHHHHHhcCCC-----------ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 344555566666564433 258999999999975433332 23444444443
No 358
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.84 E-value=0.053 Score=52.67 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.+..-+-|.||+|+|||+|+++|++...
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45555678999999999999999998764
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.83 E-value=0.066 Score=51.75 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=26.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEe
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRV 161 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V 161 (713)
.++.-+.+.||+|+|||++++.+++.+ +.+++.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345558899999999999999999864 4444444
No 360
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.78 E-value=0.037 Score=54.78 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=17.9
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHh-hcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVA-NRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA-~e~ 154 (713)
+.+..-+.|.||+|+|||++++.|+ +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4556668899999999999999999 765
No 361
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.75 E-value=0.053 Score=51.71 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+-+.|.||+|+|||++++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4477899999999999999998664
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.69 E-value=0.042 Score=54.96 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
.++.-+-|.||+|+|||++++.|++.+|...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~ 53 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhc
Confidence 3444477899999999999999999877543
No 363
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.49 E-value=0.089 Score=54.87 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
|+.+..-+++.|+||+|||+++..+|... +.+++.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68888889999999999999999988643 34444444
No 364
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.39 E-value=0.081 Score=58.26 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+|+.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 365
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.35 E-value=0.075 Score=57.37 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHh
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVA 151 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA 151 (713)
|+.+..-++|+||||||||+|++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 78888889999999999999999665
No 366
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.31 E-value=0.13 Score=53.78 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCcc-----cccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 107 EVQRTMLELINQPE-----KFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 107 ~~~~~i~~~l~~~~-----~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+++.+.+++.... .--.+...+++-+++.||+|+|||+++..+|..+
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 77 ALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp HHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455666664332 1112234677789999999999999999999743
No 367
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.27 E-value=0.065 Score=61.06 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=31.2
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeeccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSE 165 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~ 165 (713)
+.-|+|.|+||+|||++|++||..+ |.+++.+++..
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4558999999999999999999998 99998887433
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.19 E-value=0.082 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++-+.|.||+|+|||+|+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345678899999999999999998754
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.15 E-value=0.031 Score=54.27 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.1
Q ss_pred EEeeCCCCCchhHHHHHHhhccCce
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
|.+.||+|+|||++++.|+..++..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999987643
No 370
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=92.15 E-value=0.14 Score=54.13 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=54.0
Q ss_pred ceeeeeeeechh--hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEec
Q psy6523 216 KFFCGGTLISDR--YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKL 293 (713)
Q Consensus 216 ~~~cggslI~~r--~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L 293 (713)
...|+|.+|+++ ||||++||+.... .+.|.+.. . .......+..|+ .+|||||++
T Consensus 62 ~~~GSGfiI~~~~G~IlTnaHVv~~~~---~i~V~~~d--------g--~~~~a~vv~~d~----------~~DlAlLkv 118 (345)
T 3stj_A 62 EGLGSGVIINASKGYVLTNNHVINQAQ---KISIQLND--------G--REFDAKLIGSDD----------QSDIALLQI 118 (345)
T ss_dssp EEEEEEEEEETTTTEEEECHHHHTTEE---EEEEECTT--------S--CEEEEEEEEEET----------TTTEEEEEE
T ss_pred ceeEEEEEEECCCCEEEEChHHhCCCC---EEEEEeCC--------C--cEEEEEEEEEcC----------CCCEEEEEE
Confidence 367999999987 9999999997532 23333321 1 111222233332 479999999
Q ss_pred CCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 294 DTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 294 ~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
..+. .+.++.+......-.+..+.+.||..
T Consensus 119 ~~~~----~~~~~~l~~s~~~~~G~~V~aiG~p~ 148 (345)
T 3stj_A 119 QNPS----KLTQIAIADSDKLRVGDFAVAVGNPF 148 (345)
T ss_dssp SSCC----SCCCCCBCCGGGCCTTBEEEEEECGG
T ss_pred cccC----CCceEeecCcccCCCCCEEEEEECCC
Confidence 7653 34566666555555677888899853
No 371
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.15 E-value=0.078 Score=50.04 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCceeE
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDACFI 159 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~~~ 159 (713)
.+|+||.||+|+|||++|.++.. .|..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~-rG~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID-RGHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCeEe
Confidence 57999999999999999999996 465443
No 372
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.07 E-value=0.09 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=22.6
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
|-|.|.||+|+|||+|++.|..+..-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 348999999999999999998776433
No 373
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.84 E-value=0.096 Score=49.89 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.1
Q ss_pred EEeeCCCCCchhHHHHHHhhccCceeEEeeccc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~~~~~~~V~~~~ 165 (713)
+|++|++|+|||.+|+.+|.. +.+.+.+.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87777766543
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.72 E-value=0.11 Score=51.37 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
...-|.+.||||+|||++++.|+..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4455778899999999999999998763
No 375
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.67 E-value=0.076 Score=53.13 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=24.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+ .-+.|.||+|+|||+|.+++++-.
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567 778899999999999999999854
No 376
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.66 E-value=0.067 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+++.||+|+|||++++++++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445558899999999999999999854
No 377
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.65 E-value=0.075 Score=53.06 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|++.|++-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35666668899999999999999999753
No 378
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.52 E-value=0.064 Score=53.06 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=23.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555557899999999999999999754
No 379
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.51 E-value=0.077 Score=50.09 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhccC
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-.+++||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 457899999999999999997654
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.49 E-value=0.093 Score=56.14 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=28.0
Q ss_pred cccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 119 PEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 119 ~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
|+.+..+-+.+..-+++.||+|+|||++++++++..
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445555445556668999999999999999999854
No 381
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.44 E-value=0.073 Score=56.50 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4444557899999999999999999854
No 382
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.40 E-value=0.1 Score=51.44 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+++.+-+.|.||+|+|||+|.++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45566678999999999999999998654
No 383
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.40 E-value=0.082 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|+|||+|.++|++-.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555668899999999999999999754
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.33 E-value=0.15 Score=53.35 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
..|.-+-+.||+|||||++++.|+..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455678899999999999999998764
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.28 E-value=0.078 Score=53.60 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=25.2
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc-Ccee
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT-DACF 158 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~-~~~~ 158 (713)
..+.-|.+.|++|+|||++++.||..+ ++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 345668899999999999999999988 5433
No 386
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.25 E-value=0.087 Score=53.42 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|+|||+|.++|++-.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555557899999999999999999854
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.17 E-value=0.099 Score=50.25 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.6
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+.||+|+|||++++.+|+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 36789999999999999999865
No 388
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.12 E-value=0.093 Score=55.81 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4444557799999999999999999854
No 389
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.12 E-value=0.093 Score=56.12 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4445557799999999999999999854
No 390
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.09 E-value=0.093 Score=55.76 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4445557799999999999999999853
No 391
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.08 E-value=0.086 Score=51.78 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+++++-.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999999754
No 392
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.05 E-value=0.16 Score=53.48 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc---cCceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR---TDACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~ 162 (713)
|+.+..-+++.|+||+|||+|+..+|.. .+.++..++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 6788888999999999999999998875 355655554
No 393
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.02 E-value=0.096 Score=55.92 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4455557799999999999999999754
No 394
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.96 E-value=0.087 Score=55.86 Aligned_cols=28 Identities=39% Similarity=0.519 Sum_probs=23.2
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|||||+|.++||+-.
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455557899999999999999999754
No 395
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.91 E-value=0.08 Score=59.29 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.3
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCcee---EEeecccceeee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACF---IRVIGSELVQKY 170 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~---~~V~~~~i~s~~ 170 (713)
.+.-|+|.|+||+|||++|+.||..+++.+ ..++..++....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 355689999999999999999999886544 345655554433
No 396
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.89 E-value=0.099 Score=53.06 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4555558899999999999999999854
No 397
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.88 E-value=0.094 Score=53.00 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=23.2
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4445557899999999999999999754
No 398
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Probab=90.86 E-value=0.062 Score=45.55 Aligned_cols=43 Identities=30% Similarity=0.705 Sum_probs=34.8
Q ss_pred cchhcccccccccChhhhhcCCCccccccCcccccCCCCCCCCCccc
Q psy6523 334 IASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQV 380 (713)
Q Consensus 334 ~~~~L~~~~~~~~~~~~c~~~~~~~~~it~~~~cAG~~~~~~d~c~~ 380 (713)
.++.|+++.++++++.+|++.. ...++.+|+||| ..+.++|++
T Consensus 3 ~~~~L~~~~v~i~~~~~C~~~~--~~~i~~~~iCa~--~~~~~~C~G 45 (97)
T 1yph_E 3 TPDRLQQASLPLLSNTNCKKYW--GTKIKDAMICAG--ASGVSSCMG 45 (97)
T ss_dssp CCSBCEEEEEEBCCHHHHHHHH--GGGCCTTEEEEE--CSSCBCCTT
T ss_pred cCccceEEEEEECCHHHhhHHh--cCCCCCceEeec--CCCCCCCcC
Confidence 4578999999999999998643 235889999999 356789986
No 399
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.80 E-value=0.083 Score=55.92 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.+.||+-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 4455557799999999999999999743
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.77 E-value=0.093 Score=52.55 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999999854
No 401
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.74 E-value=0.11 Score=50.86 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=20.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
..-+.|.||+|+|||+|++++++-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 344778999999999999999974
No 402
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.69 E-value=0.15 Score=55.87 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=29.7
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc----cCceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR----TDACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e----~~~~~~~V~~ 163 (713)
|+.+..-+++.|+||+|||++|..+|.. .|.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 6778888999999999999999888864 2455555553
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.64 E-value=0.097 Score=51.90 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|.++|++..
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34556668899999999999999999854
No 404
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.64 E-value=0.084 Score=54.39 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.-|.+.||+|+|||++|+.++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999998776
No 405
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.57 E-value=0.07 Score=56.70 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=30.6
Q ss_pred ceeeeeecCCcccccccchHHHHHHHHHHHhcccC
Q psy6523 678 TMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLL 712 (713)
Q Consensus 678 ~re~~~~~P~v~W~dIGgl~~vk~~L~~av~~Pl~ 712 (713)
.++.+...|+++|+||+|++++|++|+++|.||++
T Consensus 71 ~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~ 105 (357)
T 3d8b_A 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPML 105 (357)
T ss_dssp HHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHH
T ss_pred HhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhh
Confidence 35566678999999999999999999999999864
No 406
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.57 E-value=0.12 Score=52.66 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+.+..-+.|.||+|+|||+|.+.|++-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455566889999999999999999985
No 407
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.55 E-value=0.11 Score=52.63 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 35566668899999999999999999754
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.53 E-value=0.099 Score=52.25 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+.|++-.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455557899999999999999999754
No 409
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.53 E-value=0.11 Score=52.97 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=24.6
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.+..-+.|.||+|+|||+|++.|++-..
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355566688999999999999999998543
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.51 E-value=0.1 Score=55.81 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=23.3
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.++||+-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 4455557899999999999999999854
No 411
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.51 E-value=0.075 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-+++.||+|+|||++.+++++..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999864
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.50 E-value=0.1 Score=52.53 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.+..-+.|.||+|+|||+|.+.|++-..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45555688999999999999999998543
No 413
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=90.49 E-value=0.19 Score=53.63 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=31.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCce--eEEeecccce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDAC--FIRVIGSELV 167 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~--~~~V~~~~i~ 167 (713)
...+|++|++||||+++|+++....+.. |+.|++..+-
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~ 191 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP 191 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSC
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCC
Confidence 3459999999999999999999866543 9999987654
No 414
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.43 E-value=0.13 Score=48.62 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=22.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
....+-+.+.||+|+|||++++.++..+
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3445678899999999999999999763
No 415
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.42 E-value=0.12 Score=52.32 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555568899999999999999999754
No 416
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.38 E-value=0.11 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+.+..-+.|.||+|+|||+|.+.|++-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455566889999999999999999974
No 417
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.34 E-value=0.23 Score=54.01 Aligned_cols=34 Identities=29% Similarity=0.203 Sum_probs=26.2
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
+|+-+++.||+|+|||+++..+|..+ |..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 57778999999999999999999643 44444444
No 418
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.34 E-value=0.11 Score=52.33 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+.|++-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999999854
No 419
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.30 E-value=0.11 Score=53.15 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|+++|++-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4455558899999999999999999854
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.30 E-value=0.12 Score=52.55 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4555568899999999999999999754
No 421
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.24 E-value=0.14 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+.-+-|.||+|+|||++++.|++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344577899999999999999999755
No 422
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.17 E-value=0.22 Score=52.25 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.++.-+.|.||+|+|||++++.||+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999999853
No 423
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.17 E-value=0.17 Score=53.78 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.5
Q ss_pred cccCCCC--CCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 123 VNLGIEP--PKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 123 ~~~gi~~--p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
-.+.+.+ ..-+.+.||+|+|||+|++.|++-....
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3334555 5678899999999999999999976543
No 424
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.10 E-value=0.16 Score=52.31 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=24.3
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
..+.-|.+.||+|+|||++++.|+..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34566789999999999999999987753
No 425
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.09 E-value=0.14 Score=56.24 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=29.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVI 162 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~ 162 (713)
|+.+..-+++.||||+|||+|+..+|... |.+++.++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 78888889999999999999999988743 44454444
No 426
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.08 E-value=0.11 Score=53.08 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+.|++-.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455558899999999999999999854
No 427
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.99 E-value=0.12 Score=52.20 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=23.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.+.|++-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555568899999999999999999854
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.93 E-value=0.12 Score=66.04 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeecccceeee
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKY 170 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~~~i~s~~ 170 (713)
|+.+...++++|+||+|||.||..+|.+. +.+++.++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql 775 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 775 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH
Confidence 68999999999999999999999999865 4468888887766654
No 429
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.88 E-value=0.088 Score=55.85 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|||||+|.+.||+-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4455557799999999999999999854
No 430
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.88 E-value=0.16 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
++.-+.+.||+|+|||++++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45668899999999999999999754
No 431
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.88 E-value=0.21 Score=47.65 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=22.6
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc---cCceeEEe
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR---TDACFIRV 161 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V 161 (713)
+-++++||+|+|||+++..++.. .+..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45789999999999998766654 35554444
No 432
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.87 E-value=0.19 Score=54.99 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
|+.+..-+++.|+||+|||++|..+|... |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67777889999999999999998888643 556665553
No 433
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.86 E-value=0.29 Score=53.34 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
+|+-|++.||||+|||+++.++|..+ |..+..|+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999999999865 33444444
No 434
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.84 E-value=0.12 Score=52.55 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|+|||+|+++|++-.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555567899999999999999999854
No 435
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.75 E-value=0.17 Score=50.28 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
|+-|.+.|++|+|||++++.||..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44588999999999999999999883
No 436
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.74 E-value=0.14 Score=58.10 Aligned_cols=34 Identities=32% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc---cCceeEEeec
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR---TDACFIRVIG 163 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e---~~~~~~~V~~ 163 (713)
.+-+++.||||||||+++.+++.. .+..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 356889999999999999999873 4555554443
No 437
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.71 E-value=0.27 Score=53.60 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=26.4
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
+|+-|++.||+|+|||+++..+|..+ |..+..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57789999999999999999998633 44454444
No 438
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.64 E-value=0.16 Score=52.80 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=23.6
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.++.-+-+.||+|+|||+|++.|++...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34555577899999999999999998653
No 439
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.54 E-value=0.15 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.6
Q ss_pred CcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-.|++.|+||+|||+++-++|..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999998888753
No 440
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.47 E-value=0.17 Score=56.42 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=30.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeec
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIG 163 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~ 163 (713)
|+.+..-+++.|+||+|||+|+..+|... |.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777889999999999999998888643 455655553
No 441
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.43 E-value=0.14 Score=55.06 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.8
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
-+.+..-+-|.||+|||||+|.++||+-
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3556666889999999999999999974
No 442
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.37 E-value=0.11 Score=58.70 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC----ceeEEeecccc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD----ACFIRVIGSEL 166 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~----~~~~~V~~~~i 166 (713)
+.-|+|.|+||+|||++|++|+..++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 35588999999999999999999876 67777775444
No 443
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.32 E-value=0.14 Score=57.22 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+....++++.||+|+|||++++++++...
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35567799999999999999999998664
No 444
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.41 Score=45.05 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 106 NEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 106 ~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
..+.+.+.+++.... .-...+..-|++.|++|+|||+|..++.+..
T Consensus 27 ~~l~~~l~~~~~~~~---~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 27 SQWREWIDEKLGGGS---GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp HHHHHHHHHHC-----------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhc---CCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555543222 1112445679999999999999999998754
No 445
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.08 E-value=0.42 Score=53.05 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc---CceeEEeec
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT---DACFIRVIG 163 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~~ 163 (713)
.+++-|++.|+||+|||+++..||..+ |..+..|+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999644 555555543
No 446
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.07 E-value=0.11 Score=57.39 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCcee
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACF 158 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~ 158 (713)
.+.-|+|.|.||+|||++++.+|..+++.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 355789999999999999999999876544
No 447
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.83 E-value=0.18 Score=56.03 Aligned_cols=26 Identities=8% Similarity=-0.073 Sum_probs=23.8
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
..|.|.|++|||||+++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999885
No 448
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.67 E-value=0.26 Score=48.57 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=23.3
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc---CceeEEee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT---DACFIRVI 162 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~---~~~~~~V~ 162 (713)
-++++||+|+|||+++..+|..+ |..++.+.
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46778999999999988887654 55555554
No 449
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.67 E-value=0.16 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+.|.||+|+|||+|.++|++-.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555558899999999999999999754
No 450
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.56 E-value=0.28 Score=48.75 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=29.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhccCceeEEeecc-ccee
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRTDACFIRVIGS-ELVQ 168 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~~~~~~~V~~~-~i~s 168 (713)
.+|+.||+|+|||.++.+++...+..++.+.+. +++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 489999999999999999998887776666654 4443
No 451
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.39 E-value=0.31 Score=47.56 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=26.7
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccCceeEEee
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~~~~~~V~ 162 (713)
-.|=|+|.+|||||++++.++. .|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3577999999999999999997 998887643
No 452
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.30 E-value=0.18 Score=57.77 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=18.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-+|++||||||||.++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999987766553
No 453
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.29 E-value=0.2 Score=50.79 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=22.7
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+. ..-+.|.||+|+|||+|.+.|++-.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 44 4457899999999999999999864
No 454
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.21 E-value=0.18 Score=56.41 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
|+.+..-+++.||||+|||+|++.+|+.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6777788999999999999999999975
No 455
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.20 E-value=0.19 Score=56.29 Aligned_cols=40 Identities=30% Similarity=0.291 Sum_probs=29.2
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHH--Hhhcc--CceeEEeeccc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARA--VANRT--DACFIRVIGSE 165 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~a--lA~e~--~~~~~~V~~~~ 165 (713)
++++..-++|.||+|+|||+|++. +++-. +..-+.|++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 467778899999999999999999 45432 34455555443
No 456
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.05 E-value=0.15 Score=53.46 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.+...+++.||+|+|||+|++++++...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45566799999999999999999998754
No 457
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.03 E-value=0.25 Score=46.56 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=21.7
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+-+.+.|++|+|||+++..++..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999864
No 458
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.91 E-value=0.19 Score=53.51 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.+..-+++.||+|+|||++++++++...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456777899999999999999999998654
No 459
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.85 E-value=0.35 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
..=|.+.||+|+|||++++.|+..+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34477889999999999999998773
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.72 E-value=0.15 Score=57.49 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.+..-+.|.||+|+|||+++++||+.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3445588999999999999999999774
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.66 E-value=0.23 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+++-+++.||+|+|||+++..+|..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356778999999999999999999743
No 462
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.28 E-value=0.28 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-|.+.||+|+|||+|.+.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 463
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.22 E-value=0.75 Score=50.06 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhcc----CceeEEeec
Q psy6523 107 EVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT----DACFIRVIG 163 (713)
Q Consensus 107 ~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e~----~~~~~~V~~ 163 (713)
.+.+.+.+++.....--.+.-.+|+.|++.|++|+|||+++-.+|..+ |..+..|+.
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 344555555543211011112467889999999999999998888643 555555554
No 464
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.17 E-value=0.43 Score=46.78 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.5
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhccCce
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRTDAC 157 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~~~~ 157 (713)
.+=|.+.||+|+|||++++.++..++.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4557888999999999999999998874
No 465
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.05 E-value=0.34 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
...-|++.|++|+|||+|..++.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999999754
No 466
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.93 E-value=0.27 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-|.|.||+|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 467
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.83 E-value=0.29 Score=51.96 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 127 IEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 127 i~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+..-+-|.||+|+|||+|.++|++-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4555557899999999999999999744
No 468
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.78 E-value=0.2 Score=49.03 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=21.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
.=|.|.||+|+|||++++.++..+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3467889999999999999998664
No 469
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=86.63 E-value=0.94 Score=49.33 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=54.6
Q ss_pred ceeeeeeeechh--hHHhhcccccCCCCCCceEEEEccccCCcccccceEEEEeeEEeeCCCCCcCCCCCCccceEEEec
Q psy6523 216 KFFCGGTLISDR--YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKL 293 (713)
Q Consensus 216 ~~~cggslI~~r--~vltaa~c~~~~~~~~~~vv~ig~~~~~~~~d~~~~~~~v~~ii~h~~~~~~~~~~~~~diall~L 293 (713)
...|+|.+|+++ ||||++||+.... .+.|.+.. . ......-+..| ...|+|+|++
T Consensus 62 ~~~GSGfii~~~~G~IlTn~Hvv~~a~---~i~V~~~d--------g--~~~~a~vv~~d----------~~~DlAllkv 118 (436)
T 4a8c_A 62 EGLGSGVIINASKGYVLTNNHVINQAQ---KISIQLND--------G--REFDAKLIGSD----------DQSDIALLQI 118 (436)
T ss_pred ceEEEEEEEECCCCEEEECHHHhCCCC---EEEEEeCC--------C--CEEEEEEEEEc----------CCCCEEEEEe
Confidence 467999999987 9999999997642 33343321 1 11112222223 2579999999
Q ss_pred CCCCCCCCCcccccCCCCCCccCCCceEEEeecc
Q psy6523 294 DTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGR 327 (713)
Q Consensus 294 ~~p~~~~~~i~~icl~~~~~~~~~~~~~v~GwG~ 327 (713)
..+. .+.++.+......-.+..+.+.||..
T Consensus 119 ~~~~----~l~~~~l~~s~~~~~G~~v~aiG~P~ 148 (436)
T 4a8c_A 119 QNPS----KLTQIAIADSDKLRVGDFAVAVGNPF 148 (436)
T ss_pred cCCC----CCceEeccCcccCCCCCEEEEEEcCC
Confidence 7653 45667776655556677888888853
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.58 E-value=0.34 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
-|++.|++|+|||+|++++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999754
No 471
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.58 E-value=0.44 Score=52.03 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
.+..-+.|.||+|||||+|++.||+....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 33444789999999999999999997654
No 472
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.53 E-value=0.28 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=22.2
Q ss_pred CCc-EEeeCCCCCchhHHHHHHhhccC
Q psy6523 130 PKG-VLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 130 p~g-vLL~GPpGtGKT~la~alA~e~~ 155 (713)
+.| +++.||+|+|||++.+++++...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344 68999999999999999998764
No 473
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.49 E-value=0.63 Score=52.56 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=34.1
Q ss_pred ccccCCCCCcHHHHHHHHHHHhCcccccccCCCCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 96 ARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 96 ~r~~d~iG~~~~~~~~i~~~l~~~~~~~~~gi~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
......+|-+.++.+ +.+.+.... ...+-|+++||+|.|||.||+.+++.
T Consensus 121 ~~~~~~vGR~~~l~~-L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNA-IQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CCCSSCCCCHHHHHH-HHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCCeecccHHHHHH-HHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 344556776665554 444444321 23567899999999999999999764
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.45 E-value=0.24 Score=51.43 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.4
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhccC
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTD 155 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~~ 155 (713)
-+.+..-+-|.||+|+|||+|++.|++-..
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456677789999999999999999998553
No 475
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.13 E-value=0.32 Score=45.71 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-|++.|++|+|||+|.+.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 476
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.01 E-value=0.37 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.2
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-.+++||.|+|||.+..||.--
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999853
No 477
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.98 E-value=0.29 Score=53.83 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 126 GIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 126 gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.+..-+.|.||+|+|||+|+|.|++-.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35555668999999999999999999854
No 478
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.88 E-value=0.3 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=18.0
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-+|++||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999987776653
No 479
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=85.70 E-value=0.39 Score=43.77 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
.--|++.|++|+|||+|++++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345899999999999999999864
No 480
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.69 E-value=0.32 Score=55.46 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhh
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVAN 152 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~ 152 (713)
.+-+++.||||||||+++.++..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHH
Confidence 35689999999999998777654
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.67 E-value=0.37 Score=44.37 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-|.+.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.66 E-value=0.32 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEeeCCCCCchhHHHHHHhhcc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+.|.||+|+|||+|.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999999854
No 483
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.58 E-value=0.67 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
.+..-++++||+|||||+|++.||+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 334558999999999999999998753
No 484
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.45 E-value=0.47 Score=50.10 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCc
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDA 156 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~ 156 (713)
...-+.|.||+|+|||+|.+.|++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3445789999999999999999998654
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.38 E-value=0.37 Score=43.65 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.1
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
.|++.|++|+|||+|++++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 486
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.27 E-value=0.24 Score=47.49 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.5
Q ss_pred cCCCCCCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 125 LGIEPPKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 125 ~gi~~p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+.+..-|.|.||+|+|||+|.+++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334555568999999999999999998643
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.18 E-value=0.41 Score=44.03 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=20.4
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e 153 (713)
--|++.|++|+|||+|.+++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45899999999999999999864
No 488
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=85.08 E-value=1.1 Score=46.19 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
++-+++.||+|+|||+++..+|..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6678889999999999999999754
No 489
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.04 E-value=0.44 Score=43.28 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
+..|++.|++|+|||+|.+++.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 490
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=85.00 E-value=0.45 Score=49.25 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=25.5
Q ss_pred CCCcEEeeCCCCCchhHHHHHHhhccCceeEE
Q psy6523 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160 (713)
Q Consensus 129 ~p~gvLL~GPpGtGKT~la~alA~e~~~~~~~ 160 (713)
..+|||+.||+|+|||++|.++.. .|..++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 368999999999999999999874 5665544
No 491
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.93 E-value=0.45 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e 153 (713)
-.|++.|++|+|||+|..++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 492
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.88 E-value=0.46 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CcEEeeCCCCCchhHHHHHHhhcc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e~ 154 (713)
--|++.|++|+|||+|.+++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998653
No 493
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.77 E-value=0.46 Score=43.32 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
.|++.|++|+|||+|.+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 494
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=84.71 E-value=0.47 Score=43.37 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
.--|++.|++|+|||+|.+++.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 495
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.66 E-value=0.47 Score=43.77 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred CcEEeeCCCCCchhHHHHHHhhc
Q psy6523 131 KGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 131 ~gvLL~GPpGtGKT~la~alA~e 153 (713)
-.|++.|++|+|||+|.+++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 496
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.59 E-value=0.23 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.4
Q ss_pred EEeeCCCCCchhHHHHHHhhcc
Q psy6523 133 VLLFGPPGTGKTLCARAVANRT 154 (713)
Q Consensus 133 vLL~GPpGtGKT~la~alA~e~ 154 (713)
+.+.||+|||||+|.++|+.-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999999854
No 497
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.55 E-value=0.56 Score=43.25 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 128 EPPKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 128 ~~p~gvLL~GPpGtGKT~la~alA~e 153 (713)
..+.-|++.|++|+|||+|.+++.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999753
No 498
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.24 E-value=0.5 Score=43.67 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred CCcEEeeCCCCCchhHHHHHHhhc
Q psy6523 130 PKGVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 130 p~gvLL~GPpGtGKT~la~alA~e 153 (713)
..-|++.|++|+|||+|.+++.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 499
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.16 E-value=0.5 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-|++.|++|+|||+|.+++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999863
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.15 E-value=0.38 Score=43.88 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=19.5
Q ss_pred cEEeeCCCCCchhHHHHHHhhc
Q psy6523 132 GVLLFGPPGTGKTLCARAVANR 153 (713)
Q Consensus 132 gvLL~GPpGtGKT~la~alA~e 153 (713)
-|++.|++|+|||+|.+++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4889999999999999999753
Done!