RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6523
(713 letters)
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 237 bits (608), Expect = 6e-74
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 10/189 (5%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
+VGG + ++PW V L FCGG+++++++++TAAHCV + + + VV EHN
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK---ITVVAGEHN 57
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
E + R V++++ H +NA +++HDIALL+LD PL V+P+C+
Sbjct: 58 I-EETEHTEQKRNVIRIIPHHNFNA-AINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 314 K---FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGY 370
+G V GWGRV G+ A L+ +VP++ C + F +T NM CAG+
Sbjct: 116 TNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF--TITNNMFCAGF 173
Query: 371 VEGGKDSCQ 379
EGG+DSCQ
Sbjct: 174 HEGGRDSCQ 182
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 236 bits (605), Expect = 3e-73
Identities = 70/193 (36%), Positives = 100/193 (51%), Gaps = 11/193 (5%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG E PW V L G CGGTLI+ +V++AAHC K ++LI V+ EH+
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ ++ ++RRV +V+ Y + +HDIALL+L P+ V P+CLP+
Sbjct: 61 L-SEHDGDEQSRRVAQVIIPSTYVPG---TTNHDIALLRLHQPVVLTDHVVPLCLPERTF 116
Query: 314 KF----TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ---FPGFEAKLTGNMM 366
R V GWG++ + G A +L VP + Q+C Q G +T M
Sbjct: 117 SERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMF 176
Query: 367 CAGYVEGGKDSCQ 379
CAGY +G KDSC+
Sbjct: 177 CAGYSDGSKDSCK 189
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 234 bits (599), Expect = 2e-72
Identities = 67/192 (34%), Positives = 101/192 (52%), Gaps = 16/192 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
IVGG + E PW L + FCGGT++S+ Y+LTAAHC+ +KR V + +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR---FKVRVGDR 57
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
N E V V+ H ++ + ++D DIA+L+L TP+ F+ V+P CLP+
Sbjct: 58 NT-EQEEGGEAVHEVEVVIKHNRFTKE---TYDFDIAVLRLKTPITFRMNVAPACLPERD 113
Query: 313 ----EKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMC 367
TQ+TG V G+GR E G+ ++ L+ +VP + C+ +T NM C
Sbjct: 114 WAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF---IITQNMFC 170
Query: 368 AGYVEGGKDSCQ 379
AGY +D+CQ
Sbjct: 171 AGYDTKQEDACQ 182
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 233 bits (597), Expect = 2e-72
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 6/188 (3%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCV-RSSKRQKDLIVVISEH 252
IVGG + +PWVV L + CG +L+S ++++AAHCV + ++ H
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
++ + Q R + +++ +P YN + D+DIA++ L+ + + + P+ LP+
Sbjct: 61 MKSNLTSPQTVPRLIDEIVINPHYNRR---RKDNDIAMMHLEFKVNYTDYIQPISLPEEN 117
Query: 313 EKFTQRT-GTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYV 371
+ F ++ GWG V G A L+ VP++SN+ C+Q E +T NM+CAGY
Sbjct: 118 QVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMP-EYNITENMICAGYE 176
Query: 372 EGGKDSCQ 379
EGG DSCQ
Sbjct: 177 EGGIDSCQ 184
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 233 bits (596), Expect = 1e-71
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 23/217 (10%)
Query: 183 EGCGVPNRMDRIVGGWTTEVNEYPWVVALE-----QAGKFFCGGTLISDRYVLTAAHCVR 237
CG D+I+ G T E+PW + +F CGG+LI++RY++TAAHCV
Sbjct: 12 NDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVA 71
Query: 238 SSKRQKD---LIVVISEHNRATVYETQIE----------TRRVVKVLTHPKYNAQGAKSH 284
+ V + E N AT + + + + HP Y G+K
Sbjct: 72 GRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD-GSKDR 130
Query: 285 DHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQV 343
HDIAL++L+ +EF + PVCLPQ E+ + TVVGWGR E GQ ++ + V
Sbjct: 131 YHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTET-GQYSTIKQKLAV 189
Query: 344 PVMSNQECRQ-FPGFEAKLTGNMMCAGYVEGGKDSCQ 379
PV+ ++C + F ++ + +CAG E KDSC
Sbjct: 190 PVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCG 225
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 231 bits (591), Expect = 2e-71
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 13/192 (6%)
Query: 194 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISE 251
IVGG E+PW V++ + + FCGG++I+DR+V+ AAHC++ + +V+ E
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAP-ALVSLVVGE 59
Query: 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
H+ + T +T V + + Y+ + ++D++++K + F V P+C P
Sbjct: 60 HDS-SAASTVRQTHDVDSIFVNENYDPA---TLENDVSVIKTAVAITFDINVGPICAPDP 115
Query: 312 GEKFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAG 369
+ R GWG + G LR + + +N C + + +M+CA
Sbjct: 116 ANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD--TIYDDMICAT 173
Query: 370 YVEG--GKDSCQ 379
G +DSCQ
Sbjct: 174 DNTGMTDRDSCQ 185
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 233 bits (597), Expect = 2e-70
Identities = 71/209 (33%), Positives = 100/209 (47%), Gaps = 9/209 (4%)
Query: 177 MEGCNNEGCGVPN-RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHC 235
+ CG +DRIVGG T + +PW V+L G CGG+L+S +VLTAAHC
Sbjct: 100 FLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHC 159
Query: 236 VRSSKRQ-KDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQG---AKSHDHDIALL 291
R V +A+ + V V+ H Y ++ + +DIAL+
Sbjct: 160 FPERNRVLSRWRVFAGAVAQASPHG---LQLGVQAVVYHGGYLPFRDPNSEENSNDIALV 216
Query: 292 KLDTPLEFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQE 350
L +PL + PVCLP G+ TV GWG + GQ A L+ +VP++SN
Sbjct: 217 HLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDV 276
Query: 351 CRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
C + ++ M CAGY EGG D+CQ
Sbjct: 277 CNGADFYGNQIKPKMFCAGYPEGGIDACQ 305
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 228 bits (584), Expect = 2e-70
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQK--DLIV 247
IVGG + E+P+ ++ FCG ++ ++ Y +TA HCV + L +
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVC 307
V E + +V E + V K++ H ++ D+DI+LLKL L F V+P+
Sbjct: 61 VAGELDM-SVNEGSEQIITVSKIILHENFD---YNLLDNDISLLKLSGSLTFNDNVAPIA 116
Query: 308 LPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMC 367
LP+ G T V GWG E G L+ VP++S+++CR G ++ +M+C
Sbjct: 117 LPEQGHTATG-DVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG-ADEILDSMIC 174
Query: 368 AGYVEGGKDSCQ 379
AG EGGKDSCQ
Sbjct: 175 AGVPEGGKDSCQ 186
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 227 bits (580), Expect = 6e-70
Identities = 56/186 (30%), Positives = 77/186 (41%), Gaps = 16/186 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
+VGG E+P++V L CGG L + VLTAAHCV S + +
Sbjct: 1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ R KVL P + +++ D AL+KL P+ P
Sbjct: 57 LQSSSAV---KVRSTKVLQAPGFT---KETYGKDWALIKLAQPINQ-----PTLKIATTT 105
Query: 314 KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEG 373
+ Q T TV GWG E G L VP +S+ CR F + M+CAGY
Sbjct: 106 AYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFI-LVANEMICAGYDTK 164
Query: 374 GKDSCQ 379
+D+CQ
Sbjct: 165 QEDTCQ 170
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 233 bits (595), Expect = 7e-70
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 185 CGVP--NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ 242
CG+ +I GG + ++PW V + G G L+ D +VLTAAH V K
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHD 208
Query: 243 -KDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKP 301
L + + R + + TQ V H Y D+DIAL+KL+ +
Sbjct: 209 ASALDIRMGTLKRLSPHYTQ---AWSEAVFIHEGYTHD--AGFDNDIALIKLNNKVVINS 263
Query: 302 TVSPVCLPQLGEKFTQRTGT---VVGWGRVEESGQIASDLRATQVPVMSNQECRQ----F 354
++P+CLP+ + RT GWG + G +A +L +P++ +Q+C
Sbjct: 264 NITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAAYEKP 322
Query: 355 PGFEAKLTGNMMCAGYVEGGKDSCQ 379
P +T NM+CAG GGKDSC+
Sbjct: 323 PYPRGSVTANMLCAGLESGGKDSCR 347
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 226 bits (578), Expect = 1e-69
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG E E+PW +L+ G CG TLI+ ++++AAHC + K
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ + R + +++ H KY SHD+DI+L +L +P+ + V VCLP
Sbjct: 61 KPSK-----MKRGLRRIIVHEKYK---HPSHDYDISLAELSSPVPYTNAVHRVCLPDASY 112
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
+F V G+G ++ G + LR QV ++ C + + +T M+CAG +E
Sbjct: 113 EFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLE 172
Query: 373 GGKDSCQ 379
G D+CQ
Sbjct: 173 GKTDACQ 179
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 227 bits (581), Expect = 3e-69
Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 24/227 (10%)
Query: 173 ERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVL 230
E+ +E RIV G E+ PW V L + + CG +LISDR+VL
Sbjct: 10 EKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVL 69
Query: 231 TAAHCVRSSKRQK-----DLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHD 285
TAAHC+ K DL+V I +H+R + + K+ HP+YN ++ D
Sbjct: 70 TAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLD 127
Query: 286 HDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQ----RTGTVVGWGRVEE------SGQIA 335
DIAL+KL P+ F + PVCLP + G V GWG ++E
Sbjct: 128 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 187
Query: 336 SDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE---GGKDSCQ 379
S L+ +P++ C+ ++T NM CAGY D+C+
Sbjct: 188 SVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACE 232
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 227 bits (580), Expect = 3e-69
Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 15/211 (7%)
Query: 180 CNNEGCGVPNR-----MDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAH 234
+ CG ++ RI+GG ++ +PW+ A+ G FC G+L+ +V++AAH
Sbjct: 17 PGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAH 75
Query: 235 CVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLD 294
C S + + VV+ +H +T + K + + Y+ DHD+ L++L
Sbjct: 76 CFSHSPPRDSVSVVLGQHFF-NRTTDVTQTFGIEKYIPYTLYSVF--NPSDHDLVLIRLK 132
Query: 295 TP----LEFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSN 348
V P+CLP+ G F + GWG ++E+ S LR VP++++
Sbjct: 133 KKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVAD 192
Query: 349 QECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
+C + A ++ NM+CAGY + D+CQ
Sbjct: 193 HKCSSPEVYGADISPNMLCAGYFDCKSDACQ 223
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 225 bits (576), Expect = 3e-69
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ-KDLIVVISEH 252
I GG + ++PW V + G G L+ D +VLTAAH V K L + +
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
R + + TQ V H Y D+DIAL+KL+ + ++P+CLP+
Sbjct: 59 KRLSPHYTQ---AWSEAVFIHEGYTHDA--GFDNDIALIKLNNKVVINSNITPICLPRKE 113
Query: 313 EKFTQRTGT---VVGWGRVEESGQIASDLRATQVPVMSNQECRQ----FPGFEAKLTGNM 365
+ RT GWG + G +A +L +P++ +Q+C P +T NM
Sbjct: 114 AESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 366 MCAGYVEGGKDSCQ 379
+CAG GGKDSC+
Sbjct: 173 LCAGLESGGKDSCR 186
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 224 bits (574), Expect = 8e-69
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 12/193 (6%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKF-FCGGTLISDRYVLTAAHCVRSSKRQK-----DLIV 247
+VGG + E+PW V+L G+ CG +LIS ++++AAHC + +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVC 307
+ H+++ ++ RR+ ++++HP +N + D+DIALL+L+ P E+ V P+
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDF---TFDYDIALLELEKPAEYSSMVRPIS 117
Query: 308 LPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMM 366
LP F V GWG + G A L+ ++ V++ C ++T MM
Sbjct: 118 LPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL--LPQQITPRMM 175
Query: 367 CAGYVEGGKDSCQ 379
C G++ GG DSCQ
Sbjct: 176 CVGFLSGGVDSCQ 188
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 227 bits (581), Expect = 1e-68
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Query: 185 CGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK 240
CG P + RI+GG ++ +PW V G GG L+ DR++LTAAH + +
Sbjct: 77 CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE 134
Query: 241 RQK----DLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP 296
+ L V + N + + + +V HP Y + + + DIALL+L+
Sbjct: 135 HEAQSNASLDVFLGHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLELENS 192
Query: 297 LEFKPTVSPVCLPQLGEKFT-QRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQF- 354
+ P + P+CLP + G V G+G +EE A DLR ++PV + Q C +
Sbjct: 193 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWL 250
Query: 355 --PGFEAKLTGNMMCAGYVEGGKDSCQ 379
+ NM CAG+ +D+CQ
Sbjct: 251 RGKNRMDVFSQNMFCAGHPSLKQDACQ 277
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 223 bits (570), Expect = 1e-68
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 13/188 (6%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG + ++P++V++ + G +CGG+L++ VLTAAHCV + + +
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQ-SGFQIRAGSLS 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
R + T + V HP Y+ +++D+A+LKL T + + L G
Sbjct: 60 R----TSGGITSSLSSVRVHPSYS-----GNNNDLAILKLSTSIPSGGNIGYARLAASGS 110
Query: 314 KFTQ-RTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYV 371
+ TV GWG E G L VP++S CR G + +T M CAG
Sbjct: 111 DPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG-TSAITNQMFCAGVS 169
Query: 372 EGGKDSCQ 379
GGKDSCQ
Sbjct: 170 SGGKDSCQ 177
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 227 bits (580), Expect = 1e-68
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 185 CGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK 240
CGVP RI+GG ++ +PW V + GG LI++ +VLTAAH V ++
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVEGNR 126
Query: 241 RQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGA----KSHDHDIALLKLDTP 296
+ + + + T + + V HP + + D+DIAL++L P
Sbjct: 127 ---EPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDP 183
Query: 297 LEFKPTVSPVCLPQLGEKFTQRTGT---VVGWGRVEESGQIASDLRATQVPVMSNQECRQ 353
++ PTVSP+CLP + G + GWGR E+ A L+A ++PV ++C++
Sbjct: 184 VKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK-RDRAVRLKAARLPVAPLRKCKE 242
Query: 354 -------FPGFEAKLTGNMMCAGYVEGGKDSCQ 379
T NM+CAG E G DSC+
Sbjct: 243 VKVEKPTADAEAYVFTPNMICAGG-EKGMDSCK 274
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 223 bits (571), Expect = 2e-68
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQ----KDLIVVI 249
I+GG ++ +PW V G GG L+ DR++LTAAH + + + L V +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
N + + + +V HP Y + + + DIALL+L+ + P + P+CLP
Sbjct: 59 GHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP 116
Query: 310 QLGEKF-TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ---FPGFEAKLTGNM 365
+ G V G+G +EE A DLR ++PV + Q C + NM
Sbjct: 117 DNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNM 174
Query: 366 MCAGYVEGGKDSCQ 379
CAG+ +D+CQ
Sbjct: 175 FCAGHPSLKQDACQ 188
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 228 bits (584), Expect = 2e-68
Identities = 62/221 (28%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 180 CNNEGCGVPNRM---DRIVGGWT-TEVNEYPWVVAL--------EQAGKFFCGGTLISDR 227
CG+ N +I G E E+PW+VA+ + CGG+LI+
Sbjct: 113 LKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPS 172
Query: 228 YVLTAAHCVRSSKRQ-KDLIVVISEHNRATVYET-QIETRRVVKVLTHPKYNAQGAKSHD 285
VLT AHCV S + + + E + T E + R++ +V+ H +N + +
Sbjct: 173 VVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPK---TVV 229
Query: 286 HDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGTVVGWGRVEE--SGQIASDLRATQV 343
+D+ALL LD PL + +CLPQ + F GWG+ E + ++ L+ Q+
Sbjct: 230 NDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQL 289
Query: 344 PVMSNQECRQ-----FPGFEAKLTGNMMCAGYVEGGKDSCQ 379
P + +C+ G + L +CAG E GKD+C
Sbjct: 290 PTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCT 329
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 228 bits (582), Expect = 5e-68
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 28/219 (12%)
Query: 180 CNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALE----QAGKFFCGGTLISDRYVLTAAHC 235
N CG R+ G+ +++ PW+ L +F CGG +IS+RY+LTAAHC
Sbjct: 106 DENFDCGNFLS-QRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHC 164
Query: 236 VRSSKRQKDLIVVISEHNRATVYETQ-----------IETRRVVKVLTHPKYNAQGAKSH 284
V + + + EH +T + + + + K L H KY+ A+
Sbjct: 165 VHGLQN-DLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYD---ARHI 220
Query: 285 DHDIALLKLDTPLEFKPTVSPVCLPQLGE----KFTQRTGTVVGWGRVEESGQIASDLRA 340
HDIALLKL+ + F+ + P+CLP E T V GWG E+G + L
Sbjct: 221 MHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQ 279
Query: 341 TQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
VP+ C Q + + + +C G +DSC+
Sbjct: 280 ANVPLQPRSACSQA--YRRAVPLSQLCVGG-GDLQDSCK 315
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 223 bits (571), Expect = 5e-68
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 180 CNNEGCGVP--NRMDRIVGGWTTEVNEYPWVVAL-----EQAGKFFCGGTLISDRYVLTA 232
CG +I+GG T + PW A+ + + CGG+L+S +V++A
Sbjct: 8 ELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISA 67
Query: 233 AHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLK 292
HC +++D IV + V ++ H Y+A +H +DIALLK
Sbjct: 68 THCFIDYPKKEDYIVYLGRSRL-NSNTQGEMKFEVENLILHKDYSADTL-AHHNDIALLK 125
Query: 293 LDTP----LEFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVM 346
+ + + T+ +CLP + T + G+G+ + + + L+ T V ++
Sbjct: 126 IRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLI 185
Query: 347 SNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
S++EC+Q + +++T M+CA + DSCQ
Sbjct: 186 SHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQ 218
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 227 bits (580), Expect = 8e-68
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 18/207 (8%)
Query: 185 CGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK 240
CG P + +I+GG ++ +PW V G GG L+ DR++LTAAH + +
Sbjct: 145 CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE 202
Query: 241 RQK----DLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP 296
+ L V + N + + + +V HP Y + + + DIALL+L+
Sbjct: 203 HEAQSNASLDVFLGHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLELENS 260
Query: 297 LEFKPTVSPVCLPQLGEKFT-QRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQF- 354
+ P + P+CLP + G V G+G +EE A DLR ++PV + Q C +
Sbjct: 261 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWL 318
Query: 355 --PGFEAKLTGNMMCAGYVEGGKDSCQ 379
+ NM CAG+ +D+CQ
Sbjct: 319 RGKNRMDVFSQNMFCAGHPSLKQDACQ 345
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 221 bits (566), Expect = 1e-67
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 10/192 (5%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
++GG E+PW ++ + CG +L+S L+A+HCV ++ V+
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLP-NNIRVIAG 59
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
++ TQ T V H Y A S+ +DIA+L L T + + LP
Sbjct: 60 LWQQSDTSGTQ--TANVDSYTMHENYGAG-TASYSNDIAILHLATSISLGGNIQAAVLPA 116
Query: 311 LGEKFTQ-RTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPG--FEAKLTGNMMC 367
T + GWGR + + + L+ + +PV++ +C A + N +C
Sbjct: 117 NNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC 176
Query: 368 AGYVEGGKDSCQ 379
G +C
Sbjct: 177 VQDPAGNTGACN 188
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 221 bits (565), Expect = 2e-67
Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
IVGG + E+PW V+L A + CGG+LI ++VLTAAHC Q +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
+ ++ +++ H Y +HDIAL+KL PLE+ P+ LP
Sbjct: 61 ILEL-SDITKDTPFSQIKEIIIHQNYK---VSEGNHDIALIKLQAPLEYTEFQKPISLPS 116
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAG 369
G+ T T V GWG +E G+I + L+ +P+++N+EC++ + K+T M+CAG
Sbjct: 117 KGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQ-DYKITQRMVCAG 175
Query: 370 YVEGGKDSCQ 379
Y EGGKD+C+
Sbjct: 176 YKEGGKDACK 185
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 219 bits (561), Expect = 6e-67
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 194 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
++ G T + PW V L + K CG LI +VLTAAHC+ SK+ L+V + E+
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKK---LLVRLGEY 57
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
+ +E + +V HP Y+ + D+DIALL L P T+ P+CLP G
Sbjct: 58 DL-RRWEKWELDLDIKEVFVHPNYSKS---TTDNDIALLHLAQPATLSQTIVPICLPDSG 113
Query: 313 EKFTQ-----RTGTVVGWGRVEESGQIASD-----LRATQVPVMSNQECRQFPGFEAKLT 362
+ + V GWG + A L ++PV+ + EC + ++
Sbjct: 114 LAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN--MVS 171
Query: 363 GNMMCAGYVEGGKDSCQ 379
NM+CAG + +D+C+
Sbjct: 172 ENMLCAGILGDRQDACE 188
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 219 bits (561), Expect = 7e-67
Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 194 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRQK--------- 243
I G + PW+ L G+ FCGG+L+ +++TAAHC+ S K
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 244 ----DLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEF 299
D +++ +H R + + V HP+Y+ + ++D+AL++L
Sbjct: 61 LSPSDFKIILGKHWR-LRSDENEQHLGVKHTTLHPQYD---PNTFENDVALVELLESPVL 116
Query: 300 KPTVSPVCLPQLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFE 358
V P+CLP+ ++ V GWG+ + L ++P++ + C++ + +
Sbjct: 117 NAFVMPICLPEGPQQ-EGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYAPLK 174
Query: 359 AKLTGNMMCAGYVEGGKDSCQ 379
K+T +M+CAG EGGKD+C
Sbjct: 175 KKVTRDMICAGEKEGGKDACA 195
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 218 bits (559), Expect = 9e-67
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 194 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISE 251
I+GG +NE+ ++VAL ++ FCGGTLI+ +VLTAAHC R + + +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKN-----FRIKLGM 55
Query: 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
H++ E + K N D DI L++LD+P++ ++P LP
Sbjct: 56 HSKKVPNEDEQTRVPKEKFFCLSSKNYT---LWDKDIMLIRLDSPVKNSKHIAPFSLPSS 112
Query: 312 GEKFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAG 369
++GWGR+ + D + ++ + CR +P FE T +CAG
Sbjct: 113 PPSVGS-VCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAG 171
Query: 370 YVEGGKDSCQ 379
+EGGKD+C+
Sbjct: 172 ILEGGKDTCK 181
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 218 bits (557), Expect = 1e-66
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG+ + P V+L +G FCGG+L+++ +V++AAHC +S + V + EHN
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSR-----VEVRLGEHN 54
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
V E + +V+ HP Y++ + D+DI L+KL P V PV LP
Sbjct: 55 I-KVTEGSEQFISSSRVIRHPNYSSY---NIDNDIMLIKLSKPATLNTYVQPVALPTSCA 110
Query: 314 KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGYVE 372
TV GWG S ++ L+ +P++S +C +PG +T M CAGY+E
Sbjct: 111 PAGT-MCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG---MITNAMFCAGYLE 166
Query: 373 GGKDSCQ 379
GGKDSCQ
Sbjct: 167 GGKDSCQ 173
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 217 bits (556), Expect = 2e-66
Identities = 70/189 (37%), Positives = 100/189 (52%), Gaps = 14/189 (7%)
Query: 194 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
IVGG+ + E PW L + FCGGT++S+ Y+LTAAHC+ +KR V + +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR---FKVRVGDR 57
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
N E V V+ H ++ + ++D DIA+L+L TP+ F+ V+P LP
Sbjct: 58 NT-EQEEGGEAVHEVEVVIKHNRFTKE---TYDFDIAVLRLKTPITFRMNVAPASLPT-A 112
Query: 313 EKFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGY 370
T + GWG SG D L+ PV+S +C +PG K+T NM C G+
Sbjct: 113 PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG---KITSNMFCVGF 169
Query: 371 VEGGKDSCQ 379
+EGGKDSCQ
Sbjct: 170 LEGGKDSCQ 178
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 223 bits (571), Expect = 3e-66
Identities = 69/227 (30%), Positives = 100/227 (44%), Gaps = 24/227 (10%)
Query: 173 ERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVL 230
E+ +E RIV G E+ PW V L + + CG +LISDR+VL
Sbjct: 145 EKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVL 204
Query: 231 TAAHCVRSSKRQ-----KDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHD 285
TAAHC+ DL+V I +H+R + + K+ HP+YN ++ D
Sbjct: 205 TAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLD 262
Query: 286 HDIALLKLDTPLEFKPTVSPVCLPQLGEKF----TQRTGTVVGWGRVEE------SGQIA 335
DIAL+KL P+ F + PVCLP G V GWG ++E
Sbjct: 263 RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP 322
Query: 336 SDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE---GGKDSCQ 379
S L+ +P++ C+ ++T NM CAGY D+C+
Sbjct: 323 SVLQVVNLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACE 367
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 217 bits (556), Expect = 4e-66
Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 10/192 (5%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG ++ +PW+ A+ G FC G+L+ +V++AAHC S + + VV+ +H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCLP 309
+T + K + + Y+ DHD+ L++L V P+CLP
Sbjct: 60 F-NRTTDVTQTFGIEKYIPYTLYSVF--NPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKLTGNMMC 367
+ G F + GWG ++E+ S LR VP++++ +C + A ++ NM+C
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLC 176
Query: 368 AGYVEGGKDSCQ 379
AGY + D+CQ
Sbjct: 177 AGYFDCKSDACQ 188
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 217 bits (555), Expect = 4e-66
Identities = 65/191 (34%), Positives = 106/191 (55%), Gaps = 11/191 (5%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
IVGG + E+PW V L + CGG++I ++++LTAAHC + K L V
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
N++ + E V +++ H +Y +DIALLKL+T + + + P+ LP
Sbjct: 61 ILNQSEIKEDT-SFFGVQEIIIHDQYKMA---ESGYDIALLKLETTVNYTDSQRPISLPS 116
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
GE+ T V GWG + +I + L+ ++P+++N+EC++ + G K+T M+CA
Sbjct: 117 KGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG--HKITHKMICA 174
Query: 369 GYVEGGKDSCQ 379
GY EGGKD+C+
Sbjct: 175 GYREGGKDACK 185
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 215 bits (551), Expect = 1e-65
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 193 RIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
I+GG + P++ +++ G CGG LI ++VLTAAHC + + VV+ H
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
+ + E +T + K + + + +DI L+KL T + V + +
Sbjct: 62 SL-SKNEASKQTLEIKKFIPFSRVT---SDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKT 117
Query: 313 EKFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQEC--RQFPGFEAKLTGNMMCAG 369
+ V GWG + SD LR V V+S + C + + + +T +M+CAG
Sbjct: 118 SLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAG 177
Query: 370 YVEGGKDSCQ 379
+G KDSC+
Sbjct: 178 DAKGQKDSCK 187
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 215 bits (551), Expect = 1e-65
Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 15/192 (7%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG +++ + PW V + K FCGG++++ +V+TAA CV +K D+ +
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKP-SDISIHYGSSY 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEF-KPTVSPVCLPQLG 312
R T T + K + +Y+ + ++ A+++ + P++ T + LP L
Sbjct: 60 RTT-----KGTSVMAKKIYIVRYH---PLTMQNNYAVIETEMPIKLDDKTTKKIELPSLL 111
Query: 313 EKFTQRT-GTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQF---PGFEAKLTGNMMC 367
T V GWG S L V+ + C + + + + C
Sbjct: 112 YDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFC 171
Query: 368 AGYVEGGKDSCQ 379
AG
Sbjct: 172 AGGEYDETYIGY 183
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 214 bits (548), Expect = 3e-65
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 11/186 (5%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG V +YP+ V+L +G CG +++ + VLTAAHCV L V + +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ V + + Y+ +D+AL+ L P++F V P+ L E
Sbjct: 61 L----SESGDVYDVEDAVVNKNYDDF---LLRNDVALVHLTNPIKFNDLVQPIKLSTNDE 113
Query: 314 KFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEG 373
T+ GWG G + L+ ++ V ++C + ++ + +C +
Sbjct: 114 DLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTLT-KR 169
Query: 374 GKDSCQ 379
G+ +C
Sbjct: 170 GEGACH 175
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 215 bits (550), Expect = 3e-65
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 185 CGV----PNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCV 236
CG PN R+VGG + +PW ++L + + CGGTLI+ +VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 237 RSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP 296
++ V + ++N E V + H K+N+ +DIAL+KL
Sbjct: 61 SNTL---TYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSF---LVRNDIALIKLAET 114
Query: 297 LEFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFP 355
+E T+ CLP G Q V GWGR+ +G IA++L+ PV+ C Q
Sbjct: 115 VELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRD 174
Query: 356 GFEAKLTGNMMCAGYVEGGKDSCQ 379
+ + M+CAG +G +C
Sbjct: 175 WWGTTVKETMVCAGG-DGVISACN 197
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 214 bits (547), Expect = 3e-65
Identities = 66/188 (35%), Positives = 101/188 (53%), Gaps = 16/188 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG+T N P+ V+L +G FCGG+LI+ ++V++AAHC +S + V + E N
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSG-----IQVRLGEDN 54
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
V E + K + HP YN+ + ++DI L+KL + V+ + LP
Sbjct: 55 I-NVVEGNEQFISASKSIVHPSYNSN---TLNNDIMLIKLKSAASLNSRVASISLPT--S 108
Query: 314 KFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYV 371
+ T + GWG + SG D L+ + P++S+ C+ ++T NM CAGY+
Sbjct: 109 CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYL 166
Query: 372 EGGKDSCQ 379
EGGKDSCQ
Sbjct: 167 EGGKDSCQ 174
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 214 bits (547), Expect = 4e-65
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
++GG +NE+ ++ + A CGGTLI+ +VLTA HC R + R + + HN
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDRGNMR-----IYLGMHN 54
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ + + K N D DI L++L+ P+ ++P+ LP
Sbjct: 55 LKVLNKDALRRFPKEKYFCLNTRNDT---IWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP 111
Query: 314 KFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGYV 371
++GWG + D + ++ C+ + G L +CAG +
Sbjct: 112 SVGS-VCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG----LAATTLCAGIL 166
Query: 372 EGGKDSCQ 379
EGGKD+C+
Sbjct: 167 EGGKDTCK 174
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 215 bits (550), Expect = 4e-65
Identities = 67/206 (32%), Positives = 97/206 (47%), Gaps = 24/206 (11%)
Query: 194 IVGGWTTEVNEYPWVVALEQAG--KFFCGGTLISDRYVLTAAHCVRSSKRQK-----DLI 246
IV G E+ PW V L + + CG +LISDR+VLTAAHC+ K DL+
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 247 VVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPV 306
V I +H+R + + K+ HP+YN ++ D DIAL+KL P+ F + PV
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 307 CLPQLGEKFTQ----RTGTVVGWGRVEE------SGQIASDLRATQVPVMSNQECRQFPG 356
CLP + G V GWG ++E S L+ +P++ C+
Sbjct: 119 CLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-- 176
Query: 357 FEAKLTGNMMCAGYVE---GGKDSCQ 379
++T NM CAGY D+C+
Sbjct: 177 TRIRITDNMFCAGYKPDEGKRGDACE 202
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 226 bits (577), Expect = 4e-65
Identities = 67/205 (32%), Positives = 110/205 (53%), Gaps = 11/205 (5%)
Query: 180 CNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAG---KFFCGGTLISDRYVLTAAHCV 236
C + RIVGG + E+PW V L + CGG++I ++++LTAAHC
Sbjct: 374 CKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF 433
Query: 237 RSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP 296
+ K L V N++ + E V +++ H +Y +DIALLKL+T
Sbjct: 434 YGVESPKILRVYSGILNQSEIKEDTSF-FGVQEIIIHDQYK---MAESGYDIALLKLETT 489
Query: 297 LEFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-F 354
+ + + P+CLP G++ T V GWG + +I + L+ ++P+++N+EC++ +
Sbjct: 490 VNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 549
Query: 355 PGFEAKLTGNMMCAGYVEGGKDSCQ 379
G K+T M+CAGY EGGKD+C+
Sbjct: 550 RGH--KITHKMICAGYREGGKDACK 572
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 214 bits (547), Expect = 7e-65
Identities = 68/203 (33%), Positives = 95/203 (46%), Gaps = 18/203 (8%)
Query: 184 GCGVP-----NRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVR 237
CG P R+VGG + +PW V+L + G FCGGTLIS +VLTAAHC+
Sbjct: 3 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE 62
Query: 238 SSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPL 297
S R V++ H E ++ V ++ P DIALLKL +P
Sbjct: 63 KSPRPSSYKVILGAHQE-VNLEPHVQEIEVSRLFLEPTRK---------DIALLKLSSPA 112
Query: 298 EFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPG 356
V P CLP RT + GWG + A L+ Q+PV+ N+ C ++
Sbjct: 113 VITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEF 171
Query: 357 FEAKLTGNMMCAGYVEGGKDSCQ 379
++ +CAG++ GG DSCQ
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQ 194
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 213 bits (545), Expect = 7e-65
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG E + P++ +++ G CGG L+++++VL+AAHC+ + K + V++ H+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGK-VQVLLGAHS 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ E V++ + HP + DHD+ LL+L P V P+ ++
Sbjct: 60 L-SQPEPSKRLYDVLRAVPHPDSQ---PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDR 115
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
T V GWG V +G+ L+ +PV+ C + + +T +MCA
Sbjct: 116 DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE--S 173
Query: 373 GGKDSCQ 379
+DSC+
Sbjct: 174 NRRDSCK 180
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 212 bits (541), Expect = 3e-64
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 23/191 (12%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+ G +PW VAL + CGG L+++R+VLTAAHC + V +
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNE-----YTVHLGSDT 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ + + + K HP Y+ Q +H +D+ L+KL++ V V LP E
Sbjct: 56 L---GDRRAQRIKASKSFRHPGYSTQ---THVNDLMLVKLNSQARLSSMVKKVRLPSRCE 109
Query: 314 KFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
GT V GWG L V ++S Q+C + + L +M+CA
Sbjct: 110 P----PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD---LLENSMLCA 162
Query: 369 GYVEGGKDSCQ 379
G + K++C
Sbjct: 163 GIPDSKKNACN 173
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 212 bits (542), Expect = 4e-64
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 194 IVGGWTTEVNEYPWVVAL-----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVV 248
I+GG T + PW A+ + + CGG+LIS +V++A HC +++D IV
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 249 ISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVS 304
+ V ++ H Y+A +H +DIALLK+ + + T+
Sbjct: 61 LGRSRL-NSNTQGEMKFEVENLILHKDYSADTL-AHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 305 PVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKLT 362
+ LP + T + G+G+ + + + L+ T V ++S++EC+Q + +++T
Sbjct: 119 TISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 363 GNMMCAGYVEGGKDSCQ 379
M+CA + DSCQ
Sbjct: 179 TKMLCAADPQWKTDSCQ 195
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 212 bits (542), Expect = 6e-64
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 13/195 (6%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I GG + ++PW V++ G CGG+L+S+++VL+AAHC S ++ V + H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
Y + + ++ HP Y +G DIALL+L P+ F + P+ LP
Sbjct: 61 L-DSYSEDAKVSTLKDIIPHPSYLQEG---SQGDIALLQLSRPITFSRYIRPISLPAAQA 116
Query: 314 KFTQRTG-TVVGWGRVEESGQIAS--DLRATQVPVMSNQECRQF------PGFEAKLTGN 364
F TV GWG V S + + L+ +VP++S + C P + +
Sbjct: 117 SFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQED 176
Query: 365 MMCAGYVEGGKDSCQ 379
M+CAGYVEGGKD+CQ
Sbjct: 177 MVCAGYVEGGKDACQ 191
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 211 bits (540), Expect = 6e-64
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 9/187 (4%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG + P++ +L++ G CGG L+ ++VLTAAHC+ Q L +V+ H
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQ--LRLVLGLHT 58
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
++ T + + HP+Y + ++D+ALL+LD ++ T+ P+ LP +
Sbjct: 59 L----DSPGLTFHIKAAIQHPRYK--PVPALENDLALLQLDGKVKPSRTIRPLALPSKRQ 112
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
T ++ GWG + G+++ LR + V+ + C + L+ +M+C
Sbjct: 113 VVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADS 172
Query: 373 GGKDSCQ 379
+ C+
Sbjct: 173 KDQAPCK 179
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 210 bits (538), Expect = 1e-63
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG + P++V L K C G LI+ +VLTAAHC + + Q V++ H+
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQ----VILGAHS 56
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
T E + V K +P Y+ + + D+ LL+L + V+ + LP+ G+
Sbjct: 57 I-TREEPTKQIMLVKKEFPYPCYD---PATREGDLKLLQLTEKAKINKYVTILHLPKKGD 112
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ--FPGFEAKLTGNMMCAGY 370
T V GWGR S + LR ++ ++ + C F + NM+CAG
Sbjct: 113 DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 172
Query: 371 VEGGKDSCQ 379
+ GG+DSC
Sbjct: 173 LRGGRDSCN 181
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 212 bits (541), Expect = 1e-63
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 194 IVGGWTTEVNEYPWVVAL------EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247
I+GG +PW+V+L CGG+L++ +++LTAAHC R K+ D +
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 248 VISEHNRATVYETQI----ETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTV 303
+ + + R V K++ H KY+A S +DIAL+K+ P+ +
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSA---SSEANDIALMKITPPVTCGHFI 117
Query: 304 SPVCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEA 359
P CLPQ + V GWG ++E+ + S L+ +V ++ C +
Sbjct: 118 GPGCLPQFRAGPPR-VPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG 176
Query: 360 KLTGNMMCAGYVEGGKDSCQ 379
++ +CAGY EG D+CQ
Sbjct: 177 RIRSTNVCAGYPEGKIDTCQ 196
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 210 bits (536), Expect = 3e-63
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 21/204 (10%)
Query: 185 CGVP------NRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVR 237
CGVP + + RIV G +PW V+L ++ G FCGG+LI++ +V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 238 SSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPL 297
++ +VV E ++ +I+ ++ KV + KYN+ + ++DI LLKL T
Sbjct: 61 TTS----DVVVAGEFDQ-GSSSEKIQKLKIAKVFKNSKYNSL---TINNDITLLKLSTAA 112
Query: 298 EFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRV-EESGQIASDLRATQVPVMSNQECRQFP 355
F TVS VCLP + F T GWG + L+ +P++SN C+++
Sbjct: 113 SFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY- 171
Query: 356 GFEAKLTGNMMCAGYVEGGKDSCQ 379
+ K+ M+CAG G SC
Sbjct: 172 -WGTKIKDAMICAG--ASGVSSCM 192
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 208 bits (533), Expect = 5e-63
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 19/191 (9%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
++GG +NE+ +VA + FFC GTLI++ +VLTAAHC ++ + + H+
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTN-----FQMKLGVHS 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ + E + +TR + P + D DI L+KLD+ + + P+ LP
Sbjct: 56 KKVLNEDE-QTRNPKEKFICPNKK--NDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPP 112
Query: 314 KFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
G+ ++GWG + D + ++ + C+ +P +CA
Sbjct: 113 SV----GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPE--LLTEYRTLCA 166
Query: 369 GYVEGGKDSCQ 379
G +EGGKD+C
Sbjct: 167 GILEGGKDTCG 177
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 209 bits (534), Expect = 6e-63
Identities = 55/204 (26%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 194 IVGGWTTEVNEYPWVVAL------EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247
I GG ++ +PW A+ +F CGG LIS ++L+AAHC + L V
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 248 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPL----EFKPTV 303
++ R V + + V K + H +++ ++D+DIALL+L + + V
Sbjct: 61 ILGRTYR-VVPGEEEQKFEVEKYIVHKEFDDD---TYDNDIALLQLKSDSSRCAQESSVV 116
Query: 304 SPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKL 361
VCLP + T + G+G+ E S+ L+ V + + C +
Sbjct: 117 RTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTV 176
Query: 362 TGNMMCAGYVEGG------KDSCQ 379
T NM+CAG G D+CQ
Sbjct: 177 TDNMLCAGDTRSGGPQANLHDACQ 200
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 208 bits (531), Expect = 8e-63
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+ G + PW AL Q + CGG L+ DR+VLTAAHC + V + +H+
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQK-----YSVRLGDHS 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ + + + +V + + HP YN + H HDI L++L V PV L L
Sbjct: 56 LQSRDQPE-QEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP 114
Query: 314 KFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
K G + GWG V + + L +V + S +C + +PG K+T M+CA
Sbjct: 115 K----VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPG---KITEGMVCA 167
Query: 369 GYVEGGKDSCQ 379
G G D+CQ
Sbjct: 168 GS-SNGADTCQ 177
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 207 bits (530), Expect = 1e-62
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 17/188 (9%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
+V G + +P+ AL +G CGG LI +VLTAAHC + + L V + +HN
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPN-----LQVFLGKHN 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
E+ E VV+ + HP Y+ A SHD DI LL+L P + + P+ L + +
Sbjct: 56 L-RQRESSQEQSSVVRAVIHPDYD---AASHDQDIMLLRLARPAKLSELIQPLPLER--D 109
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGYV 371
T ++GWG+ G ++ + ++S +EC +PG ++T NM+CAG
Sbjct: 110 CSANTTSCHILGWGKT-ADGDFPDTIQCAYIHLVSREECEHAYPG---QITQNMLCAGDE 165
Query: 372 EGGKDSCQ 379
+ GKDSCQ
Sbjct: 166 KYGKDSCQ 173
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 207 bits (529), Expect = 2e-62
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG ++P++ +++ G+ FCGG LI R+V+TAA C +S VV+ ++
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPG-VSTVVLGAYD 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
E Q + ++ Y+ + + +D+ LL+LD +V+ + LP
Sbjct: 60 L-RRRERQSRQTFSISSMSENGYD---PQQNLNDLMLLQLDREANLTSSVTILPLPLQNA 115
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
T V GWG G+++ R V V +CR N +C G +
Sbjct: 116 TVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NNVCTGVLT 165
Query: 373 GGKDSCQ 379
C
Sbjct: 166 RRGGICN 172
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 207 bits (529), Expect = 2e-62
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 196 GGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
GG T++ + PW VA+ CGG ++S +VLTAAHCV K + +++
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKP-ETIVIQYEST 60
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEF-KPTVSPVCLPQL 311
N +E ++ V + Y ++ ++DIA+L+L PL+ P LP +
Sbjct: 61 NL---WEDPGKSDPYVSHVYLSFYR---QETMENDIAILELSRPLKLDGLKSKPAKLPDI 114
Query: 312 GEKFTQ-RTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGY 370
+ V G+G + DL++ Q+ V+ ECR G L+ + CA
Sbjct: 115 EFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG-PIFLSLQVFCAQK 173
Query: 371 VEGGKDSCQ 379
G
Sbjct: 174 --VGVSLES 180
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 207 bits (529), Expect = 2e-62
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 193 RIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
V N PW VA+ + K+ CGG L+ +VLTAAHC V + ++
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDK-----YQVWLGKN 57
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQ--------GAKSHDHDIALLKLDTPLEFKPTVS 304
N + + R V K + HP +N + +D+ LL+L P + V
Sbjct: 58 NFLEDEPSD-QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVK 116
Query: 305 PVCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAK 360
P+ LP K G+ GWG D L+ + ++ N++C + K
Sbjct: 117 PITLPTEEPKL----GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEM--K 170
Query: 361 LTGNMMCAGYVEGGKDSCQ 379
+T M+CAG ++GG +C+
Sbjct: 171 VTDAMLCAGEMDGGSYTCE 189
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 207 bits (528), Expect = 2e-62
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 194 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISE 251
+VGG +NE+P++VAL + C G LI+ +VLTAAHC R + + + +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRN-----IRIKLGM 55
Query: 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
H++ E + K G D DI L++L P+ + ++PV LP
Sbjct: 56 HSKNIRNEDEQIRVPRGKYFCLNTKFPNG---LDKDIMLIRLRRPVTYSTHIAPVSLPSR 112
Query: 312 GEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGY 370
++GWG++ T + ++ ++ C +P +CAG
Sbjct: 113 SRGVGS-RCRIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLYPWV--PADSRTLCAGI 168
Query: 371 VEGGKDSCQ 379
++GG+D+C
Sbjct: 169 LKGGRDTCH 177
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 207 bits (528), Expect = 2e-62
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 18/190 (9%)
Query: 194 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
I+ G +++ PW AL + + +CG L+ +++LTAAHC + R V + +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFR-----VRLGHY 55
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
+ + VYE+ + + VK + HP Y+ H +D+ L+KL+ + V P+ +
Sbjct: 56 SLSPVYESGQQMFQGVKSIPHPGYSHP---GHSNDLMLIKLNRRIRPTKDVRPINVSS-- 110
Query: 313 EKFTQRTG-TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAG 369
+ T V GWG + L+ + V+S + C +P ++ M CAG
Sbjct: 111 HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR---QIDDTMFCAG 167
Query: 370 YVEGGKDSCQ 379
+ G+DSCQ
Sbjct: 168 D-KAGRDSCQ 176
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 206 bits (526), Expect = 4e-62
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 16/188 (8%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+ G + PW AL + FC G L+ ++VL+AAHC ++S + + H+
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYT-----IGLGLHS 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
E + + HP+YN +D+ L+KLD + T+ + + +
Sbjct: 56 LEADQEPGSQMVEASLSVRHPEYN---RPLLANDLMLIKLDESVSESDTIRSISIAS--Q 110
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGYV 371
T V GWG + +G++ + L+ V V+S + C + + +M CAG
Sbjct: 111 CPTAGNSCLVSGWGLL-ANGRMPTVLQCVNVSVVSEEVCSKLYDP---LYHPSMFCAGGG 166
Query: 372 EGGKDSCQ 379
+ KDSC
Sbjct: 167 QDQKDSCN 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 208 bits (531), Expect = 4e-62
Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 6/141 (4%)
Query: 491 REVVET--PLLH-LDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRT 547
REV T LL +DGFD RG++K++ ATNRPD LDPA++RPGR DR +E PD +GR
Sbjct: 135 REVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRL 194
Query: 548 HIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607
I KIH R M++ D+ E +A++ GAE++++CTEAGM AIR R + DF +A
Sbjct: 195 EILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKA 254
Query: 608 VNKVARCTKIINADSENPKYI 628
V K+ K+ + P ++
Sbjct: 255 VEKIMEKKKV---KVKEPAHL 272
Score = 130 bits (330), Expect = 5e-34
Identities = 47/88 (53%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
Query: 89 MIDAIGGARFDDGAGGDNEVQ--RTMLEL-INQPEKFVNLGIEPPKGVLLFGPPGTGKTL 145
+D R++D G + ++Q R ++EL + PE F +GIEPPKG+LL+GPPGTGKTL
Sbjct: 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTL 66
Query: 146 CARAVANRTDACFIRVIGSELVQKYVGE 173
A+AVA T+A FIRV+GSELV+K++GE
Sbjct: 67 LAKAVATETNATFIRVVGSELVKKFIGE 94
Score = 106 bits (268), Expect = 7e-26
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 20/78 (25%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVA T+A FIRV+GSELV+K++GEGA + IDAI R D
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 101 GAGGDNEVQRTMLELINQ 118
GGD EVQRT+++L+ +
Sbjct: 130 LTGGDREVQRTLMQLLAE 147
Score = 75.0 bits (185), Expect = 6e-15
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 9/57 (15%)
Query: 464 VTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------PRGNIKVLM 514
M+V+E+P+V Y DIGG ++Q++++REVVE PL H + F+ P+G +L+
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKG---ILL 56
Score = 73.5 bits (181), Expect = 2e-14
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 677 VTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
M+V+E+P+V Y DIGG ++Q++++REVVE PL H
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKH 39
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 205 bits (525), Expect = 8e-62
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 11/191 (5%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
+VGG + N +P ++L + CGGTLI +V+TAAHCV VV+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL---TFRVVV 57
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
EHN + V K++ HP +N + +DIALL+L + V LP
Sbjct: 58 GEHNL-NQNNGTEQYVGVQKIVVHPYWNTDDV-AAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368
+ G + + GWG +GQ+A L+ +P + C + + + +M+CA
Sbjct: 116 RAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCA 175
Query: 369 GYVEGGKDSCQ 379
G +G + CQ
Sbjct: 176 GG-DGVRSGCQ 185
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 205 bits (523), Expect = 1e-61
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
I+GG + + P++ L E+ + CGG LIS ++VLTAAHC V++
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREIT-----VIL 55
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
H+ E+ + +V K + H YN + + HDI LLKL+ +E P V+ V LP
Sbjct: 56 GAHDV-RKRESTQQKIKVEKQIIHESYN---SVPNLHDIMLLKLEKKVELTPAVNVVPLP 111
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368
+ GWG+ + LR ++ +M + C + + +C
Sbjct: 112 SPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY---EYKFQVCV 168
Query: 369 GYVEGGKDSCQ 379
G + +
Sbjct: 169 GSPTTLRAAFM 179
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 205 bits (523), Expect = 1e-61
Identities = 61/200 (30%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGGW E + PW AL F CGG L+ ++VLTAAHC+ + + + + HN
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQ-----LWLGRHN 55
Query: 254 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDTPLE-FKPTVS 304
T + V + HP +N Q + + HD+ LL+L P + V
Sbjct: 56 LFDDENTA-QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVK 114
Query: 305 PVCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEA 359
V LP + G+ GWG +E D L+ + ++ N EC++
Sbjct: 115 VVELPTEEPEV----GSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQ--- 167
Query: 360 KLTGNMMCAGYVEGGKDSCQ 379
K+T M+C G++EGGKD+C
Sbjct: 168 KVTDFMLCVGHLEGGKDTCV 187
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 204 bits (522), Expect = 2e-61
Identities = 52/191 (27%), Positives = 72/191 (37%), Gaps = 17/191 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
I+GG + + P++ L FCGG LI +VLTAAHC S V +
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSIT-----VTL 55
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
HN +T + V+K HPKYN + HDI LLKL V + P
Sbjct: 56 GAHNITEEEDTW-QKLEVIKQFRHPKYNTS---TLHHDIMLLKLKEKASLTLAVGTLPFP 111
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368
V GWGR + L+ ++ +M Q C F +C
Sbjct: 112 SQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD---FDHNLQLCV 168
Query: 369 GYVEGGKDSCQ 379
G K + +
Sbjct: 169 GNPRKTKSAFK 179
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 203 bits (519), Expect = 3e-61
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG N +P AL +FCGG+LIS ++LTAAHC+ + + VV+ HN
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGF---VDVVLGAHN 57
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
TQ+ T + H YN+ +DIA+++L P+ ++ V LP +
Sbjct: 58 IREDEATQV-TIQSTDFTVHENYNSF---VISNDIAVIRLPVPVTLTAAIATVGLPS-TD 112
Query: 314 KFTQRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
T GWG +S SD LR VP+MSN +C G +T +C
Sbjct: 113 VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG---IVTDGNICIDS-T 168
Query: 373 GGKDSCQ 379
GGK +C
Sbjct: 169 GGKGTCN 175
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 203 bits (520), Expect = 4e-61
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 11/191 (5%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
+VGG N +PW V+L + CGGTL+ +VLTAAHC+ SS+ VV+
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSR---TYRVVL 57
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
H+ + E +V K++ H +N+ S+ +DIALLKL +P+ + CLP
Sbjct: 58 GRHSL-STNEPGSLAVKVSKLVVHQDWNSNQL-SNGNDIALLKLASPVSLTDKIQLGCLP 115
Query: 310 QLGEKFTQRTGTVV-GWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368
G V GWGR++ +G L+ Q+ V+ C + + + + NM+CA
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICA 175
Query: 369 GYVEGGKDSCQ 379
G +G SC
Sbjct: 176 GG-DGIISSCN 185
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 203 bits (519), Expect = 5e-61
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
+VGG + N +PW ++L + CGG+LI +V+TAAHCV S++ VV+
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSAR---TWRVVL 57
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
EHN E + + V V H +N+ + +DIALL+L+T V LP
Sbjct: 58 GEHNL-NTNEGKEQIMTVNSVFIHSGWNSDDV-AGGYDIALLRLNTQASLNSAVQLAALP 115
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCA 368
+ + GWG+ G ++ L+ +P + + C + + + M+CA
Sbjct: 116 PSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCA 175
Query: 369 GYVEGGKDSCQ 379
G G C
Sbjct: 176 G--GGANSGCN 184
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 213 bits (544), Expect = 6e-61
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 173 ERVLMEGCNNEGCGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRY 228
R + CGV N R RIVGG ++ + PW VA++ A CGG I +
Sbjct: 297 RRRIKSLLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCW 356
Query: 229 VLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDI 288
+LTAAHC+R+SK + + + +I V +++ H YNA ++ +DI
Sbjct: 357 ILTAAHCLRASKT-HRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAG---TYQNDI 412
Query: 289 ALLKLDTPLEF----KPTVSPVCLPQLGEKFTQRT-GTVVGWGRVEESGQIASDLRATQV 343
AL+++ P P C+P F V GWGR +++ ++ S L+ +V
Sbjct: 413 ALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFS-LQWGEV 471
Query: 344 PVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
++SN C +F G M CAG +G D+C+
Sbjct: 472 KLISN--CSKFYG-NRFYEKEMECAGTYDGSIDACK 504
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 202 bits (517), Expect = 7e-61
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
I+GG + + P++ L +Q CGG LI D +VLTAAHC SS + V +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSS-----INVTLG 55
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
HN E + V + + HP YN K+ +DI LL+L+ + V P+ LP
Sbjct: 56 AHNI-KEQEPTQQFIPVKRPIPHPAYN---PKNFSNDIMLLQLERKAKRTRAVQPLRLPS 111
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
+ +V GWG+ G+ + L+ ++ V +++C + + +C
Sbjct: 112 NKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY--YDSTIELCV 169
Query: 369 GYVEGGKDSCQ 379
G E K S +
Sbjct: 170 GDPEIKKTSFK 180
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 203 bits (518), Expect = 8e-61
Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGGW E + PW V + G+ CGG L+ ++VLTAAHC+R+ +++ H+
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSV-----ILLGRHS 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQ--------GAKSHDHDIALLKLDTPLEFKPTVSP 305
+T + +V HP Y+ HD+ LL+L P E V
Sbjct: 56 LFHPEDTG-QVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKV 114
Query: 306 VCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAK 360
+ LP GT GWG +E + L+ + V+SN C Q P K
Sbjct: 115 MDLPTQEPAL----GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ---K 167
Query: 361 LTGNMMCAGYVEGGKDSCQ 379
+T M+CAG GGK +C
Sbjct: 168 VTKFMLCAGRWTGGKSTCS 186
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 202 bits (516), Expect = 1e-60
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 17/191 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
I+GG + + P++ L CGG L+ + +VLTAAHC+ SS V +
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSIN-----VTLG 55
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
HN E + V + + HP YN ++ +DI LLKL + VSP+ LP+
Sbjct: 56 AHNI-MERERTQQVIPVRRPIPHPDYN---DETLANDIMLLKLTRKADITDKVSPINLPR 111
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCA 368
+ +V GWGR+ + L+ + V S ++C F + +CA
Sbjct: 112 SLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKN---YIPFTQICA 168
Query: 369 GYVEGGKDSCQ 379
G K+S
Sbjct: 169 GDPSKRKNSFS 179
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 202 bits (515), Expect = 2e-60
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 26/199 (13%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
+VGG+ E N PW VA+ + CGG L+ +VLTAAHC V + ++
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQ-----YEVWLGKNK 55
Query: 254 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDTPLEFKPTVSP 305
+ + R V K HP +N D+ LL+L P + V P
Sbjct: 56 LFQEEPSA-QHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKP 114
Query: 306 VCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAK 360
+ LP K G+ GWG + + D L+ + ++ N+ C + + K
Sbjct: 115 IALPTKEPK----PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQ---K 167
Query: 361 LTGNMMCAGYVEGGKDSCQ 379
+T M+CAG + GGKD+C+
Sbjct: 168 VTDVMLCAGEMGGGKDTCR 186
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 201 bits (514), Expect = 3e-60
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 26/199 (13%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GGW E + PW VA+ G F CGG L+ ++VLTAAHC+ + + + HN
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQ-----IWLGRHN 55
Query: 254 RATVYETQIETRRVVKVLTHPKYNA--------QGAKSHDHDIALLKLDTPLEFKPTVSP 305
+ +T + +V P+++ + HD+ LL+L P V
Sbjct: 56 LSKDEDTA-QFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI 114
Query: 306 VCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAK 360
+ LP K G+ GWG + S L+ ++ + SN++C + +P K
Sbjct: 115 LDLPTQEPKL----GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE---K 167
Query: 361 LTGNMMCAGYVEGGKDSCQ 379
+T ++CA + + C
Sbjct: 168 MTEFVLCATHRDDSGSICL 186
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 199 bits (509), Expect = 1e-59
Identities = 57/192 (29%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
I+GG + P++ K FCGG L+ D++VLTAAHC S V +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMT-----VTL 55
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
HN ETQ + V K + HP YN +DI LLKL + V P+ LP
Sbjct: 56 GAHNIKAKEETQ-QIIPVAKAIPHPDYNPD---DRSNDIMLLKLVRNAKRTRAVRPLNLP 111
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQEC-RQFPGFEAKLTGNMMC 367
+ V GWG+V G+ L ++ V +Q C QF N +C
Sbjct: 112 RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSS--YNRANEIC 169
Query: 368 AGYVEGGKDSCQ 379
G + S +
Sbjct: 170 VGDSKIKGASFE 181
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 198 bits (506), Expect = 3e-59
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
I+GG + + P++ L AG+ CGG L+ + +VLTAAHC S+ V +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNIN-----VTLG 55
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
HN E + + + HP+YN ++ +DI LL+L + V+PV LP+
Sbjct: 56 AHNI-QRRENTQQHITARRAIRHPQYN---QRTIQNDIMLLQLSRRVRRNRNVNPVALPR 111
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAG 369
E T TV GWGRV + LR Q+ V +++C + F + +C G
Sbjct: 112 AQEGLRPGTLCTVAGWGRV-SMRRGTDTLREVQLRVQRDRQCLRI--FGSYDPRRQICVG 168
Query: 370 YVEGGKDSCQ 379
K + +
Sbjct: 169 DRRERKAAFK 178
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 198 bits (506), Expect = 3e-59
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG+ E N PW VA+ ++ CGG LI +V+TAAHC ++ V++ +N
Sbjct: 1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCYSNN-----YQVLLGRNN 53
Query: 254 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDTPLEFKPTVSP 305
+ R V + HP Y Q H +D+ LL L P + V
Sbjct: 54 LFKDEPFA-QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKV 112
Query: 306 VCLPQLGEKFTQRTGT---VVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEAK 360
+ LP K G+ GWG S + S L+ + ++SN++C + +
Sbjct: 113 IDLPTKEPKV----GSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD---N 165
Query: 361 LTGNMMCAGYVEGGKDSCQ 379
+T M+CAG +EGGKD+C
Sbjct: 166 VTDVMLCAGEMEGGKDTCA 184
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 197 bits (504), Expect = 9e-59
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 197 GWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
G + W V+L + A CGG+LI+ +V+TA HC+ +S+ VV+ E+
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR---TYQVVLGEY 58
Query: 253 NRATVYET-QIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
+R+ + + Q+ + HP +N+ + +DIAL+KL + V LP
Sbjct: 59 DRSVLEGSEQVIPINAGDLFVHPLWNSNCV-ACGNDIALVKLSRSAQLGDKVQLANLPPA 117
Query: 312 GEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGY 370
G+ + GWGR+ G + L+ +P + + C Q+ + + M+CAG
Sbjct: 118 GDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGG 177
Query: 371 VEGGKDSCQ 379
+ C
Sbjct: 178 --DTRSGCN 184
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 195 bits (499), Expect = 2e-58
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 18/187 (9%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
IVGG + +P++V+L+ G FCG TLI+ +V++AAHCV + + + VV+ HN
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRA-VRVVLGAHN 59
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ T+ V+ + Y+ + +DI +L+L+ V LP G
Sbjct: 60 LSRREPTRQ--VFAVQRIFENGYDPV---NLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Query: 314 KFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVE 372
+ +GWG + + IAS L+ V V+++ CR+ + +C
Sbjct: 115 RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR----------SNVCTLVRG 163
Query: 373 GGKDSCQ 379
C
Sbjct: 164 RQAGVCF 170
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 196 bits (500), Expect = 3e-58
Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
+V G T W+V+L K CGG+LI + +VLTA C S KD + H+
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDL-KDYEAWLGIHD 58
Query: 254 RATVYETQIETRRVV-KVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
+ + + V +++ P+ + D+ L+KL P VS + LP G
Sbjct: 59 VHGRGDEKCKQVLNVSQLVYGPEGS---------DLVLMKLARPAVLDDFVSTIDLPNYG 109
Query: 313 EKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYV 371
++T +V GWG LR + +M N++C Q + L + +CAG
Sbjct: 110 STIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAE 168
Query: 372 EGGKDSCQ 379
+ G C+
Sbjct: 169 KIGSGPCE 176
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 196 bits (501), Expect = 8e-58
Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 25/209 (11%)
Query: 179 GCNNEGCGV---PNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAH 234
G +++ C ++ + PW V L GK FCGG +I + +VLT A
Sbjct: 35 GEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAK 94
Query: 235 CVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLD 294
C + I V + NR ++ V H +Y+A + ++D++LL+L+
Sbjct: 95 CSLLHRN----ITVKTYFNR---TSQDPLMIKITHVHVHMRYDAD---AGENDLSLLELE 144
Query: 295 TPLEFKPTVSPVCLPQLGEK----FTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQE 350
P++ PVC P+ + G + GW R + + L V ++ +E
Sbjct: 145 WPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEE 202
Query: 351 CRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
C Q +T C +
Sbjct: 203 CGQV--LNVTVTTRTYCER---SSVAAMH 226
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 197 bits (503), Expect = 9e-58
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 22/213 (10%)
Query: 172 GERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVL 230
G R+ + ++ + PW V L GK FCGG +I + +VL
Sbjct: 72 GYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVL 131
Query: 231 TAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIAL 290
T A C + I V + NR + ++ V H +Y+A + ++D++L
Sbjct: 132 TTAKCSLLHRN----ITVKTYFNRTSQDP---LMIKITHVHVHMRYDAD---AGENDLSL 181
Query: 291 LKLDTPLEFKPTVSPVCLPQLGEK----FTQRTGTVVGWGRVEESGQIASDLRATQVPVM 346
L+L+ P++ PVC P+ + G + GW R + + L V ++
Sbjct: 182 LELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLV 239
Query: 347 SNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
+EC Q +T C +
Sbjct: 240 EGEECGQVLNV--TVTTRTYCER---SSVAAMH 267
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 194 bits (495), Expect = 2e-57
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKF---FCGGTLISDRYVLTAAHCVRSSKRQ-KDLIVVI 249
IVGG +++PW V+L ++ FCGG+LI ++VLTAAHCV + L V +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
E + Q + V +++ HP++ DIALL+L+ P+ V V LP
Sbjct: 61 REQHL----YYQDQLLPVSRIIVHPQFYII---QTGADIALLELEEPVNISSRVHTVMLP 113
Query: 310 QLGEKFTQRTG-TVVGWGRVEESGQIASD--LRATQVPVMSNQECRQF-------PGFEA 359
E F V GWG V+ + L+ +VP+M N C
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 360 KLTGNMMCAGYVEGGKDSCQ 379
+ +M+CAG +DSCQ
Sbjct: 174 IIRDDMLCAGN--SQRDSCQ 191
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 188 bits (481), Expect = 1e-55
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 194 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI--S 250
+VGG PW V+L + G+ FCGG+L+ ++++LTA C S V +
Sbjct: 1 VVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
E ++ V K++ P + + LLKL+ + V+ +CLP
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPSGS---------QLVLLKLERSVTLNQRVALICLPP 108
Query: 311 LGEKFTQRTGTVV-GWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAG 369
T + GWG + +G + L + V+SNQEC ++ + MC
Sbjct: 109 EWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIK--HRGRVRESEMCTE 165
Query: 370 YVEGGKDSCQ 379
+ +C+
Sbjct: 166 GLLAPVGACE 175
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 185 bits (471), Expect = 2e-54
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
Query: 194 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS 250
IVGG + + P++ +L G FCGGTLI +VLTAAHC+R ++ + VV+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRL-VNVVLG 59
Query: 251 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQ 310
HN T TQ + V +V + Y+ A++ +DI L++L +P +V+ V LPQ
Sbjct: 60 AHNVRTQEPTQ-QHFSVAQVFLNN-YD---AENKLNDILLIQLSSPANLSASVATVQLPQ 114
Query: 311 LGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAG 369
+ T +GWGRV A L+ V V++ CR + +C
Sbjct: 115 QDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFF-CRP----------HNICTF 163
Query: 370 YVEGGKDSCQ 379
C
Sbjct: 164 VPRRKAGICF 173
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 182 bits (465), Expect = 2e-53
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 23/193 (11%)
Query: 194 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI 249
I+ G+ +P+ L + + +CGG+LI ++++LTAAHCV + ++V +
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVS---VVVYL 57
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLP 309
+ YE + ++++H +N ++ +D+AL+K+ +E+ + P+ LP
Sbjct: 58 GSAVQ---YEGEA-VVNSERIISHSMFN---PDTYLNDVALIKIP-HVEYTDNIQPIRLP 109
Query: 310 QLGEKFTQRTG---TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMM 366
E + TV GWG+ I L+ T V+ N C Q + + +
Sbjct: 110 SGEELNNKFENIWATVSGWGQSNTDTVI---LQYTYNLVIDNDRCAQEYP-PGIIVESTI 165
Query: 367 CAGYVEGGKDSCQ 379
C GK C
Sbjct: 166 CGDT-SDGKSPCF 177
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 187 bits (476), Expect = 6e-52
Identities = 44/253 (17%), Positives = 86/253 (33%), Gaps = 41/253 (16%)
Query: 157 CFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGK 216
+ ++ + + + + + CGV + ++ PW V ++ +
Sbjct: 192 HAFILQDTKALHQVFEHMLDVSKLTDTICGV-----GNMSANASDQERTPWHVTIKPKSQ 246
Query: 217 FFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKY 276
C G LISD++VLTAAHC R V + + + + K + P +
Sbjct: 247 ETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWG-----KEFLIEKAVISPGF 301
Query: 277 NAQGAKS------HDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQ------RTGTVVG 324
+ K+ + DIALLKL ++ P+CLP E T
Sbjct: 302 DVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHE 361
Query: 325 WGRVEESGQIAS--DLRATQVPV-----MSNQECRQ-----------FPGFEAKLTGNMM 366
+ + A L +++ + + C + +T +
Sbjct: 362 NELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFL 421
Query: 367 CAGYVEGGKDSCQ 379
C+G + + C+
Sbjct: 422 CSGT-QEDESPCK 433
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 188 bits (479), Expect = 9e-51
Identities = 66/203 (32%), Positives = 93/203 (45%), Gaps = 13/203 (6%)
Query: 179 GCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVR 237
C R+VGG + +PW V+L + G FCGGTLIS +VLTAAHC+
Sbjct: 547 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE 606
Query: 238 SSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPL 297
S R V++ H E ++ V ++ P DIALLKL +P
Sbjct: 607 KSPRPSSYKVILGAHQEVN-LEPHVQEIEVSRLFLEPTRK---------DIALLKLSSPA 656
Query: 298 EFKPTVSPVCLPQLGEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPG 356
V P CLP RT + GWG + A L+ Q+PV+ N+ C ++
Sbjct: 657 VITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEF 715
Query: 357 FEAKLTGNMMCAGYVEGGKDSCQ 379
++ +CAG++ GG DSCQ
Sbjct: 716 LNGRVQSTELCAGHLAGGTDSCQ 738
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 180 bits (458), Expect = 1e-49
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 52/249 (20%)
Query: 169 KYVGERVLMEGCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLI 224
+ V +++ E + CG+ T+ ++ PW + G C G ++
Sbjct: 195 EDVFYQMIDESQSLSLCGMVW-----EHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVV 249
Query: 225 SDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAK-- 282
S+ +VLTAAHC ++ + V + R + VL HP YN G K
Sbjct: 250 SEYFVLTAAHCFTVDDKEHSIKVSVGGEKR---------DLEIEVVLFHPNYNINGKKEA 300
Query: 283 ----SHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF-TQRTGTVVGWGRVEE------- 330
+D+D+AL+KL L++ T+ P+CLP R + +E
Sbjct: 301 GIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD 360
Query: 331 -----SGQIASDLRATQVPVMSNQECRQ-------------FPGFEAKLTGNMMCAGYVE 372
+ L +V + + + +T +C G V
Sbjct: 361 IKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVS 420
Query: 373 G--GKDSCQ 379
++C+
Sbjct: 421 PYADPNTCR 429
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 169 bits (430), Expect = 2e-44
Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 52/233 (22%)
Query: 185 CGVPNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSK 240
CG+ T+ ++ PW + G C G ++S+ +VLTAAHC
Sbjct: 453 CGM-----VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD 507
Query: 241 RQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKS------HDHDIALLKLD 294
++ + V + R + VL HP YN G K +D+D+AL+KL
Sbjct: 508 KEHSIKVSVGGEKR---------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 558
Query: 295 TPLEFKPTVSPVCLPQLGEKF---TQRTGT---VVGWGRVEESG-------QIASDLRAT 341
L++ T+ P+CLP T + + L
Sbjct: 559 NKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK 618
Query: 342 QVPVMSNQECRQ-------------FPGFEAKLTGNMMCAGYVEG--GKDSCQ 379
+V + + + +T +C G V ++C+
Sbjct: 619 EVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 671
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 149 bits (379), Expect = 1e-42
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 194 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEH 252
IV G +PW V+L ++ G FCGG+LI++ +V+TAAHC ++ +VV E
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTT----SDVVVAGEF 56
Query: 253 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLG 312
++ +I+ ++ KV + KYN+ + ++DI LLKL T F TVS VCLP
Sbjct: 57 DQ-GSSSEKIQKLKIAKVFKNSKYNSL---TINNDITLLKLSTAASFSQTVSAVCLPSAS 112
Query: 313 EKFTQRTGTVV-GWGR 327
+ F T V GWG
Sbjct: 113 DDFAAGTTCVTTGWGL 128
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 138 bits (350), Expect = 2e-36
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Query: 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552
V+ L +DG + N+ ++ ATNRPD +DPA++RPGRLD+ + LPD + R I K
Sbjct: 138 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197
Query: 553 HARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612
+ R V +D+ E LA++ +GA++ +C A AI R + SE + +
Sbjct: 198 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI--RESIESE---IRRERERQ 252
Query: 613 RCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIE 651
+ + ++P I F + + SV+ DI
Sbjct: 253 TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIR 291
Score = 101 bits (254), Expect = 8e-24
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 103 GGDNEVQRTMLELI----NQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACF 158
GG +V+R + EL+ P+KF+ G+ P KGVL +GPPG GKTL A+A+AN A F
Sbjct: 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77
Query: 159 IRVIGSELVQKYVGE 173
I + G EL+ + GE
Sbjct: 78 ISIKGPELLTMWFGE 92
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 471 EKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------PRGNIKVLM 514
E P VT+ DIGG ++ +L+E+V+ P+ H D F +G VL
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG---VLF 54
Score = 43.0 bits (102), Expect = 2e-04
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 35/102 (34%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEG----------ARM----------IDAIGGARFDD 100
A+AN A FI + G EL+ + GE AR +D+I AR +
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 101 GAGGDNEVQRTMLELINQPEKFVNL-----GIEPPKGVLLFG 137
G R +INQ + G+ K V + G
Sbjct: 128 IGDGGGAADR----VINQ------ILTEMDGMSTKKNVFIIG 159
Score = 41.1 bits (97), Expect = 8e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 684 EKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
E P VT+ DIGG ++ +L+E+V+ P+ H
Sbjct: 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEH 37
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 129 bits (328), Expect = 3e-36
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 536 VEFGLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 595
P+ E R I KIH+R M++ R I +A L P ++GAE++ VCTEAGM+A+R R
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 596 RKVASEKDFLEAVNKV 611
R +++DF AV KV
Sbjct: 66 RVHVTQEDFEMAVAKV 81
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 141 bits (356), Expect = 6e-36
Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 17/138 (12%)
Query: 491 REVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIF 550
R +V L +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD GR I
Sbjct: 322 RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 381
Query: 551 KIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA----------- 599
+IH ++M + D+ E +A GA++ ++C+EA + AIR + +
Sbjct: 382 QIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEV 441
Query: 600 ------SEKDFLEAVNKV 611
+ DF A+++
Sbjct: 442 MNSLAVTMDDFRWALSQS 459
Score = 99.9 bits (249), Expect = 3e-22
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 97 RFDDGAGGDNEVQ--RTMLEL-INQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
+DD G ++ + M+EL + P F +G++PP+G+LL+GPPGTGKTL ARAVAN
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 154 TDACFIRVIGSELVQKYVGE 173
T A F + G E++ K GE
Sbjct: 262 TGAFFFLINGPEIMSKLAGE 281
Score = 57.1 bits (138), Expect = 1e-08
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 456 LPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------PRGN 509
+ + +P + E +V Y DIGGC++Q+ +++E+VE PL H F PRG
Sbjct: 182 IHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG- 240
Query: 510 IKVLM 514
+L+
Sbjct: 241 --ILL 243
Score = 54.4 bits (131), Expect = 9e-08
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 669 LPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
+ + +P + E +V Y DIGGC++Q+ +++E+VE PL H
Sbjct: 182 IHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRH 226
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 23/75 (30%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVAN T A F + G E++ K GE +DAI R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--E 314
Query: 101 GAGGDNEVQRTMLEL 115
G+ E +R + +L
Sbjct: 315 KTHGEVE-RRIVSQL 328
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 124 bits (313), Expect = 4e-34
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 540 LPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 599
P+ E R I KIH+R M++ R I +A L P ++GAE++ VCTEAGM+A+R RR
Sbjct: 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHV 61
Query: 600 SEKDFLEAVNKV 611
+++DF AV KV
Sbjct: 62 TQEDFEMAVAKV 73
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 130 bits (328), Expect = 4e-34
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DG ++ VL +TNR D LD ALMRPGRLDR V LP L+ R IF+ H +S+
Sbjct: 134 LVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL 193
Query: 558 SVERDIRF--ELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611
+ + F + LA L P +GA+I ++C EA + A R +F AV +V
Sbjct: 194 KLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249
Score = 77.7 bits (192), Expect = 5e-16
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 95 GARFDDGAGGDNEVQRTMLELIN---QPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 151
G F D AG E + + E ++ PE+F+ LG + PKG LL GPPG GKTL A+AVA
Sbjct: 2 GVSFKDVAGMH-EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 152 NRTDACFIRVIGSELVQKYVG 172
F+ + G+E V+ G
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGG 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 136 bits (343), Expect = 3e-33
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 5/160 (3%)
Query: 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552
V+ L +DG + N+ ++ ATNRPD +DPA++RPGRLD+ + LPD + R I K
Sbjct: 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659
Query: 553 HARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKVA 612
+ R V +D+ E LA++ +GA++ +C A AIR + ++ N A
Sbjct: 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSA 719
Query: 613 RCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEE 652
+ + ++P I F + + SV+ DI +
Sbjct: 720 -----MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRK 754
Score = 125 bits (316), Expect = 5e-30
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 45/226 (19%)
Query: 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRT 547
E R +V L +DG R ++ V+ ATNRP+++DPAL R GR DR+V+ G+PD GR
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 548 HIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607
I +IH ++M + D+ E +A GA++ ++C+EA + AIR
Sbjct: 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR-------------- 424
Query: 608 VNKVARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHI 667
+ +I+ + E I+ + V + D +
Sbjct: 425 -----KKMDLIDLEDET----IDAEVMNSLAVTMD------DFRWALS------------ 457
Query: 668 PLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
+ +P+ V E P VT+ DIGG ++ +L+E+V+ P+ H
Sbjct: 458 ----QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499
Score = 98.3 bits (245), Expect = 2e-21
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 103 GGDNEVQRTMLELI----NQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACF 158
GG +V+R + EL+ P+KF+ G+ P KGVL +GPPG GKTL A+A+AN A F
Sbjct: 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539
Query: 159 IRVIGSELVQKYVGE 173
I + G EL+ + GE
Sbjct: 540 ISIKGPELLTMWFGE 554
Score = 85.2 bits (211), Expect = 3e-17
Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 98 FDDGAGGDNEVQ--RTMLEL-INQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154
+DD G ++ + M+EL + P F +G++PP+G+LL+GPPGTGKTL ARAVAN T
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 155 DACFIRVIGSELVQKYVGE 173
A F + G E++ K GE
Sbjct: 263 GAFFFLINGPEIMSKLAGE 281
Score = 48.3 bits (115), Expect = 8e-06
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 459 KIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRG 508
+ +P + E +V Y D+GGC++Q+ +++E+VE PL H F G
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG 234
Score = 46.7 bits (111), Expect = 2e-05
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 672 KIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
+ +P + E +V Y D+GGC++Q+ +++E+VE PL H
Sbjct: 185 EGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRH 226
Score = 44.8 bits (106), Expect = 9e-05
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 459 KIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------PRG 508
+ +P+ V E P VT+ DIGG ++ +L+E+V+ P+ H D F +G
Sbjct: 458 QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 513
Score = 44.4 bits (105), Expect = 1e-04
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 25/97 (25%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEG----------ARM----------IDAIGGARFDD 100
A+AN A FI + G EL+ + GE AR +D+I AR +
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 101 GAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFG 137
G R + +++ + + G+ K V + G
Sbjct: 590 IGDGGGAADRVINQILTEMD-----GMSTKKNVFIIG 621
Score = 29.4 bits (66), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARMIDAI 93
AVAN T A F + G E++ K GE +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Score = 28.6 bits (64), Expect = 8.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 31 IARGAVANRTDACFIRVIGSELVQKYVGE 59
IAR AVAN T A F + G E++ K GE
Sbjct: 254 IAR-AVANETGAFFFLINGPEIMSKLAGE 281
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 120 bits (304), Expect = 7e-33
Identities = 57/70 (81%), Positives = 68/70 (97%)
Query: 542 DLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASE 601
DLEGR +IF+IH++SMSVER IR+EL++RLCPNSTGAE+RSVCTEAGMFAIRARRKVA+E
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 61
Query: 602 KDFLEAVNKV 611
KDFL+AV+KV
Sbjct: 62 KDFLKAVDKV 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 126 bits (319), Expect = 1e-32
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 16/137 (11%)
Query: 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552
VV L +DG + R + ++ ATNRPD +DPA++RPGRLD+ + GLP R I K
Sbjct: 130 VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKT 189
Query: 553 HARS---MSVERDIRFELLAR--LCPNSTGAEIRSVCTEAGMFAIR-----------ARR 596
++ ++ D+ E +A C TGA++ ++ EA + A+R
Sbjct: 190 ITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGE 249
Query: 597 KVASEKDFLEAVNKVAR 613
S K F EA KV
Sbjct: 250 LKVSHKHFEEAFKKVRS 266
Score = 101 bits (254), Expect = 4e-24
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 103 GGDNEVQRTMLELINQP----EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACF 158
G +++ + I P ++F LG+ P GVLL GPPG GKTL A+AVAN + F
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 159 IRVIGSELVQKYVGE 173
I V G EL+ YVGE
Sbjct: 73 ISVKGPELLNMYVGE 87
Score = 42.9 bits (102), Expect = 2e-04
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 471 EKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------PRGNIKVLM 514
P+VT++DIG ++ E+L + P+ + D F P G VL+
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG---VLL 49
Score = 41.0 bits (97), Expect = 8e-04
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 684 EKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
P+VT++DIG ++ E+L + P+ +
Sbjct: 3 TVPNVTWADIGALEDIREELTMAILAPVRN 32
Score = 39.9 bits (94), Expect = 0.002
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 34/113 (30%)
Query: 35 AVANRTDACFIRVIGSELVQKYVGEGAVANRTDACFIRVIGSELVQKYVGEGARM----- 89
AVAN + FI V G EL+ YVGE A R F R A+
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQ--VFQR--------------AKNSAPCV 106
Query: 90 -----IDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFG 137
+DA+ R D G V +L ++ G+E + V +
Sbjct: 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMD--------GLEARQQVFIMA 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 125 bits (316), Expect = 1e-32
Identities = 51/114 (44%), Positives = 75/114 (65%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DGF+ I V+ ATNRPD LDPAL+RPGR DR+V GLPD+ GR I K+H R +
Sbjct: 139 LVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 198
Query: 558 SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611
+ DI ++AR P +GA++ ++ EA +FA R ++V S +F +A +K+
Sbjct: 199 PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252
Score = 78.9 bits (195), Expect = 2e-16
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 97 RFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154
F D AG D + ++E + +P +F LG + PKGVL+ GPPGTGKTL A+A+A
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 155 DACFIRVIGSELVQKYVG 172
F + GS+ V+ +VG
Sbjct: 70 KVPFFTISGSDFVEMFVG 87
Score = 35.0 bits (81), Expect = 0.055
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 467 MQVEEKPDVTYSDIGGCKEQIEKLREVVE 495
M E++ T++D+ GC E E++ E+VE
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVE 29
Score = 35.0 bits (81), Expect = 0.055
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 680 MQVEEKPDVTYSDIGGCKEQIEKLREVVE 708
M E++ T++D+ GC E E++ E+VE
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVE 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 124 bits (314), Expect = 4e-32
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 498 LLHLDGFD-PRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARS 556
L +DGF + VL ATNRP+ LDPALMRPGR DR+V PD GR I K+H +
Sbjct: 139 LAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198
Query: 557 MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611
+ + D+ + +A+L GA++ ++ EA + A R +K ++ EAV +
Sbjct: 199 VKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253
Score = 79.6 bits (197), Expect = 1e-16
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 97 RFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRT 154
RF D AG + + +++ + PE++ NLG + PKGVLL GPPGTGKTL A+AVA
Sbjct: 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68
Query: 155 DACFIRVIGSELVQKYVG 172
F + GS ++ +VG
Sbjct: 69 HVPFFSMGGSSFIEMFVG 86
Score = 33.8 bits (78), Expect = 0.17
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 470 EEKPDVTYSDIGGCKEQIEKLREVVE 495
EKP+V + D+ G +E E++ E+V+
Sbjct: 3 AEKPNVRFKDMAGNEEAKEEVVEIVD 28
Score = 33.8 bits (78), Expect = 0.17
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 683 EEKPDVTYSDIGGCKEQIEKLREVVE 708
EKP+V + D+ G +E E++ E+V+
Sbjct: 3 AEKPNVRFKDMAGNEEAKEEVVEIVD 28
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 122 bits (309), Expect = 1e-31
Identities = 48/111 (43%), Positives = 68/111 (61%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DGF+ I V+ ATNRPD LDPAL+RPGR DR++ PD++GR I +IHAR
Sbjct: 143 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 202
Query: 558 SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608
+ D+ LLA+ P GA++ ++ EA + A R R+ + KD EA
Sbjct: 203 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253
Score = 80.4 bits (199), Expect = 4e-17
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 87 ARMI-DAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGK 143
+ F D AG + + + ++E + P +F +G PKGVLL GPPG GK
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 144 TLCARAVANRTDACFIRVIGSELVQKYVG 172
T ARAVA FI GS+ V+ +VG
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVG 91
Score = 35.4 bits (82), Expect = 0.047
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 467 MQVEEKPDVTYSDIGGCKEQIEKLREVVE 495
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVE 33
Score = 35.4 bits (82), Expect = 0.047
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 680 MQVEEKPDVTYSDIGGCKEQIEKLREVVE 708
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVE 33
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 122 bits (308), Expect = 3e-31
Identities = 48/111 (43%), Positives = 68/111 (61%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DGF+ I V+ ATNRPD LDPAL+RPGR DR++ PD++GR I +IHAR
Sbjct: 167 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 226
Query: 558 SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAV 608
+ D+ LLA+ P GA++ ++ EA + A R R+ + KD EA
Sbjct: 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277
Score = 83.6 bits (207), Expect = 6e-18
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 ARMIDAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKT 144
AR++ F D AG + + + ++E + P +F +G PKGVLL GPPG GKT
Sbjct: 28 ARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 145 LCARAVANRTDACFIRVIGSELVQKYVG 172
ARAVA FI GS+ V+ +VG
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVG 115
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 469 VEEKPDVTYSDIGGCKEQIEKLREVVE 495
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVE 57
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 682 VEEKPDVTYSDIGGCKEQIEKLREVVE 708
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVE 57
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 126 bits (318), Expect = 6e-31
Identities = 49/114 (42%), Positives = 73/114 (64%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DGFD + I V+ ATNRPD LDPAL+RPGR D+K+ PD+ GR I +IH R+
Sbjct: 143 LVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK 202
Query: 558 SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611
+ D+ E++A+ P GA++ ++ EA + A R R + KDF EA+++V
Sbjct: 203 PLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256
Score = 78.8 bits (195), Expect = 2e-15
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 87 ARMI--DAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTG 142
A M F D G + ++ + ++E + P KF +G PKG+LL GPPGTG
Sbjct: 2 ATMYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTG 61
Query: 143 KTLCARAVANRTDACFIRVIGSELVQKYVG 172
KTL ARAVA + F + GS+ V+ +VG
Sbjct: 62 KTLLARAVAGEANVPFFHISGSDFVELFVG 91
Score = 35.6 bits (83), Expect = 0.058
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 466 MMQVEEKPDVTYSDIGGCKEQIEKLREVVE 495
M + VT+ D+GG +E IE+L+EVVE
Sbjct: 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVE 33
Score = 35.6 bits (83), Expect = 0.058
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 679 MMQVEEKPDVTYSDIGGCKEQIEKLREVVE 708
M + VT+ D+GG +E IE+L+EVVE
Sbjct: 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVE 33
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 117 bits (296), Expect = 6e-31
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 281 AKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRTGT---VVGWGRVEESG---QI 334
K + HD+ LL+L +P + V + LP + G+ GWG +E +
Sbjct: 3 GKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPEL----GSTCEASGWGSIEPGPDDFEF 58
Query: 335 ASDLRATQVPVMSNQECRQ-FPGFEAKLTGNMMCAGYVEGGKDSCQ 379
+++ Q+ ++ N C P K+T +M+CAGY+ GGKD+C
Sbjct: 59 PDEIQCVQLTLLQNTFCADAHPD---KVTESMLCAGYLPGGKDTCM 101
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 125 bits (315), Expect = 2e-30
Identities = 49/114 (42%), Positives = 71/114 (62%)
Query: 498 LLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHARSM 557
L+ +DGF+ I V+ ATNRPD LDPAL+RPGR DR++ PD++GR I +IHAR
Sbjct: 158 LVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 217
Query: 558 SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVNKV 611
+ D+ LLA+ P GA++ ++ EA + A R R+ + KD EA ++V
Sbjct: 218 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271
Score = 81.1 bits (201), Expect = 3e-16
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 ARMIDAIGGARFDDGAGGDNEVQ--RTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKT 144
AR++ F D AG + + + ++E + P +F +G PKGVLL GPPG GKT
Sbjct: 19 ARVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKT 78
Query: 145 LCARAVANRTDACFIRVIGSELVQKYVG 172
ARAVA FI GS+ V+ +VG
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVG 106
Score = 34.1 bits (79), Expect = 0.15
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 469 VEEKPDVTYSDIGGCKEQIEKLREVVE 495
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 22 LTEAPKVTFKDVAGAEEAKEELKEIVE 48
Score = 34.1 bits (79), Expect = 0.15
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 682 VEEKPDVTYSDIGGCKEQIEKLREVVE 708
+ E P VT+ D+ G +E E+L+E+VE
Sbjct: 22 LTEAPKVTFKDVAGAEEAKEELKEIVE 48
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 110 bits (278), Expect = 2e-29
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 542 DLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASE 601
D + IF M++ ++ E +GA+I S+C E+GM A+R R +
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 602 KDFLEAVNKV 611
KDF +A V
Sbjct: 62 KDFEKAYKTV 71
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 107 bits (268), Expect = 8e-26
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 12/141 (8%)
Query: 488 EKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRT 547
L + + +++ N TL L+R GR+++ P E R
Sbjct: 134 NIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI 191
Query: 548 HIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607
+ R+ ++ E + ++ N G I G R +
Sbjct: 192 GVCTGIFRT----DNVPAEDVVKIVDNFPGQSI----DFFGALRARVYDDEVRKWVSGTG 243
Query: 608 VNKVARCTKIINADSENPKYI 628
+ K+ K++N+ P +
Sbjct: 244 IEKIGD--KLLNSFDGPPTFE 262
Score = 101 bits (252), Expect = 1e-23
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 98 FDDGAGGDNEVQRTMLELINQPEK--FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD 155
D+ G M +L+ K I+ P + ++G G GK+ V +
Sbjct: 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61
Query: 156 ACFIRVIGSELVQKYVGE 173
I + EL GE
Sbjct: 62 INPIMMSAGELESGNAGE 79
Score = 64.8 bits (158), Expect = 2e-11
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 26/85 (30%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARMI------------------------DAIGGA 96
V + I + EL GE A++I DA G
Sbjct: 55 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGR 114
Query: 97 RFDDGAGG--DNEVQRTMLELINQP 119
+ V T++ + + P
Sbjct: 115 MGGTTQYTVNNQMVNATLMNIADNP 139
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 99.9 bits (250), Expect = 1e-25
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 194 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHN 253
I+GG E N +PW VA+ F CGG L++ ++VLTAAHC + V + HN
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDN-----YEVWLGRHN 55
Query: 254 RATVYETQIETRRVVKVLTHPKYN 277
T + V HP +N
Sbjct: 56 LFENENTA-QFFGVTADFPHPGFN 78
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 91.3 bits (227), Expect = 1e-22
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 546 RTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFL 605
R IF A MS+ + + L + +GA I ++ EAG+ A+R R V + D
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 606 EAVNKVARCTKIIN 619
EA + ++
Sbjct: 63 EAYATQVKTDNTVD 76
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 94.7 bits (236), Expect = 2e-21
Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 17/180 (9%)
Query: 488 EKLREVVETPLLHLDGF-DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGR 546
E R + L+ ++G + + VL ATN P LD A+ R R +R++ LPDL R
Sbjct: 132 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 189
Query: 547 THIFKIHARSMSVER-DIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFL 605
T +F+I+ + L + +G++I V +A M IR + KD
Sbjct: 190 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 249
Query: 606 ---EAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLAD----------SVAPTDIEE 652
+ K+ C+ + E I + + + + D +V D+ +
Sbjct: 250 TEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 309
Score = 91.6 bits (228), Expect = 2e-20
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 97 RFDDGAGGDNEVQRTMLELINQPEKFVNL---GIEPPKGVLLFGPPGTGKTLCARAVANR 153
+++D AG + + + E + P KF +L +P G+LL+GPPGTGK+ A+AVA
Sbjct: 16 KWEDVAGLE-GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74
Query: 154 TDACFIRVIGSELVQKYVGE 173
++ F V S+LV K++GE
Sbjct: 75 ANSTFFSVSSSDLVSKWMGE 94
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 25/79 (31%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVA ++ F V S+LV K++GE ++ +DA+ G R
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR--- 126
Query: 101 GAGGDNEVQRTML-ELINQ 118
G++E R + EL+ Q
Sbjct: 127 -GEGESEASRRIKTELLVQ 144
Score = 40.0 bits (94), Expect = 0.002
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 469 VEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGF 504
+ EKP+V + D+ G + E L+E V P+ F
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF 44
Score = 38.9 bits (91), Expect = 0.004
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 682 VEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
+ EKP+V + D+ G + E L+E V P+
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 95.3 bits (237), Expect = 2e-21
Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 488 EKLREVVETPLLHLDGF-DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGR 546
E R + L+ ++G + + VL ATN P LD A+ R R +R++ LPDL R
Sbjct: 165 EASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222
Query: 547 THIFKIHARSM-SVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFL 605
T +F+I+ SV + L + +G++I V +A M IR + KD
Sbjct: 223 TTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 282
Query: 606 ---EAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLAD----------SVAPTDIEE 652
+ K+ + + E I + + + + D +V D+ +
Sbjct: 283 TEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLK 342
Score = 80.3 bits (198), Expect = 2e-16
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 97 RFDDGAGGDNEVQRTMLELINQPEKFVNL---GIEPPKGVLLFGPPGTGKTLCARAVANR 153
+++D AG + + + E + P KF +L +P G+LL+GPPGTGK+ A+AVA
Sbjct: 49 KWEDVAGLE-GAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107
Query: 154 TDACFIRVIGSELVQKYVGE 173
++ F V S+LV K++GE
Sbjct: 108 ANSTFFSVSSSDLVSKWMGE 127
Score = 40.2 bits (94), Expect = 0.002
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 24/72 (33%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVA ++ F V S+LV K++GE ++ +DA+ G R
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR--- 159
Query: 101 GAGGDNEVQRTM 112
G++E R +
Sbjct: 160 -GEGESEASRRI 170
Score = 39.4 bits (92), Expect = 0.003
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 458 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGF 504
K+ ++ + EKP+V + D+ G + E L+E V P+ F
Sbjct: 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF 77
Score = 38.3 bits (89), Expect = 0.007
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 671 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
K+ ++ + EKP+V + D+ G + E L+E V P+
Sbjct: 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 93.6 bits (233), Expect = 5e-21
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 13/176 (7%)
Query: 488 EKLREVVETPLLHLDGF-DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGR 546
E R + L+ + G I VL ATN P LD A+ R R ++++ LP+ R
Sbjct: 127 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHAR 184
Query: 547 THIFKIHARSMSVER-DIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFL 605
+FK+H + + F L R +GA+I + +A M + RKV S F
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV---RKVQSATHFK 241
Query: 606 EAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADS------VAPTDIEEGMR 655
+ + D P + +D+ V+ +D+ +
Sbjct: 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLS 297
Score = 84.7 bits (210), Expect = 5e-18
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 97 RFDDGAGGDNEVQRTMLELINQPEKFVNL---GIEPPKGVLLFGPPGTGKTLCARAVANR 153
++ D AG + + + E + P KF +L P +G+LLFGPPGTGK+ A+AVA
Sbjct: 10 KWSDVAGLE-GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68
Query: 154 TDAC-FIRVIGSELVQKYVGE 173
+ F + S+LV K++GE
Sbjct: 69 ANNSTFFSISSSDLVSKWLGE 89
Score = 40.4 bits (95), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 469 VEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGF 504
V E+P+V +SD+ G + E L+E V P+ F
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF 38
Score = 39.7 bits (93), Expect = 0.003
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 682 VEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
V E+P+V +SD+ G + E L+E V P+
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKF 34
Score = 37.7 bits (88), Expect = 0.010
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 25/73 (34%)
Query: 61 AVANRTDAC-FIRVIGSELVQKYVGEGARM--------------------IDAIGGARFD 99
AVA + F + S+LV K++GE ++ ID++ G+R
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-- 121
Query: 100 DGAGGDNEVQRTM 112
+ ++E R +
Sbjct: 122 --SENESEAARRI 132
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 91.7 bits (228), Expect = 4e-20
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 488 EKLREVVETPLLHLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEG 545
E R + L+ LDG I V+ ATNRP +D A R RL +++ LP+
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASA 255
Query: 546 RTHIFKIH-ARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR----------- 593
R I ++ + E + + +GA++ +C EA + IR
Sbjct: 256 RKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315
Query: 594 --ARRKVASEKDFLEAVNKV 611
R + + DF A V
Sbjct: 316 PDQVRPI-AYIDFENAFRTV 334
Score = 87.9 bits (218), Expect = 6e-19
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 97 RFDDGAGGDNEVQRTMLEL----INQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 152
++D AG + + T+ E+ + +P+ F L PPKG+LLFGPPGTGKTL + +A+
Sbjct: 82 NWEDIAGVE-FAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIAS 139
Query: 153 RTDACFIRVIGSELVQKYVGE 173
++ A F + S L K+VGE
Sbjct: 140 QSGATFFSISASSLTSKWVGE 160
Score = 41.7 bits (98), Expect = 6e-04
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 28/98 (28%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
+A+++ A F + S L K+VGEG +M ID++ R
Sbjct: 136 CIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR--- 192
Query: 101 GAGGDNEVQRTML-ELINQPEKFVNLGIEPPKGVLLFG 137
G++E R + E + Q +L+ G
Sbjct: 193 -GDGEHESSRRIKTEFLVQ---LDGATTSSEDRILVVG 226
Score = 38.6 bits (90), Expect = 0.006
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 13/71 (18%)
Query: 458 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------------ 505
PK+ + ++ P V + DI G + ++E+V P+L D F
Sbjct: 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLF 123
Query: 506 -PRGNIKVLMA 515
P G K L+
Sbjct: 124 GPPGTGKTLIG 134
Score = 37.1 bits (86), Expect = 0.016
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 671 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
PK+ + ++ P V + DI G + ++E+V P+L
Sbjct: 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLR 106
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 92.7 bits (230), Expect = 5e-20
Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 13/176 (7%)
Query: 488 EKLREVVETPLLHLDGF-DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGR 546
E R + L+ + G I VL ATN P LD A+ R R ++++ LP+ R
Sbjct: 249 EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHAR 306
Query: 547 THIFKIHARSMSVER-DIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFL 605
+F++H S + F+ L R +GA+I + +A M + RKV S F
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV---RKVQSATHFK 363
Query: 606 EAVNKVARCTKIINADSENPKYIINVKQFAKFVVDLADS------VAPTDIEEGMR 655
+ I D P + +D+ V+ D+ +
Sbjct: 364 KVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLS 419
Score = 76.1 bits (187), Expect = 8e-15
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 97 RFDDGAGGDNEVQRTMLELINQPEKFVNL---GIEPPKGVLLFGPPGTGKTLCARAVANR 153
++ D AG + + + E + P KF +L P +G+LLFGPPGTGK+ A+AVA
Sbjct: 132 KWSDVAGLE-GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190
Query: 154 TDAC-FIRVIGSELVQKYVGE 173
+ F + S+LV K++GE
Sbjct: 191 ANNSTFFSISSSDLVSKWLGE 211
Score = 45.3 bits (107), Expect = 4e-05
Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 14/146 (9%)
Query: 384 EADIALLKSYGQGQYTK-SIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWDLTADKQ 442
+ + ++K QG K SI+A + +++ E KE D++
Sbjct: 39 QYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEK 98
Query: 443 TLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLD 502
++ + P K+ + V E+P+V +SD+ G + E L+E V P+
Sbjct: 99 GNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPH 158
Query: 503 GF-------------DPRGNIKVLMA 515
F P G K +A
Sbjct: 159 LFTGKRTPWRGILLFGPPGTGKSYLA 184
Score = 40.7 bits (95), Expect = 0.001
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 668 PLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
P K+ + V E+P+V +SD+ G + E L+E V P+
Sbjct: 111 PEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKF 156
Score = 35.3 bits (81), Expect = 0.065
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 26/80 (32%)
Query: 61 AVANRTDAC-FIRVIGSELVQKYVGEGARM--------------------IDAIGGARFD 99
AVA + F + S+LV K++GE ++ ID++ G+R
Sbjct: 186 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-- 243
Query: 100 DGAGGDNEVQRTML-ELINQ 118
+ ++E R + E + Q
Sbjct: 244 --SENESEAARRIKTEFLVQ 261
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 88.9 bits (221), Expect = 1e-19
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 97 RFDDGAGGDNEVQRTMLELI----NQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 152
+ D AG D ++ + E++ +PE F L P KG+LLFGPPG GKTL ARAVA
Sbjct: 19 EWTDIAGQDV-AKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVAT 76
Query: 153 RTDACFIRVIGSELVQKYVGE 173
A F+ + + L KYVG+
Sbjct: 77 ECSATFLNISAASLTSKYVGD 97
Score = 88.9 bits (221), Expect = 1e-19
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 20/131 (15%)
Query: 498 LLHLDGFDPRGN---IKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHA 554
L+ DG + I VL ATNRP LD A +R R ++V LPD + R +
Sbjct: 145 LVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLL 202
Query: 555 RSMSVER-DIRFELLARLCPNSTGAEIRSVCTEAGMFAIR-------------ARRKVAS 600
+ LA++ +G+++ ++ +A + IR A R + +
Sbjct: 203 QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAI-T 261
Query: 601 EKDFLEAVNKV 611
E+DF ++ ++
Sbjct: 262 EQDFHSSLKRI 272
Score = 41.5 bits (98), Expect = 6e-04
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 24/72 (33%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVA A F+ + + L KYVG+G ++ +D++ R
Sbjct: 73 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSER--- 129
Query: 101 GAGGDNEVQRTM 112
+ ++E R +
Sbjct: 130 -SSSEHEASRRL 140
Score = 38.8 bits (91), Expect = 0.004
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 459 KIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGF 504
K+ + VE V ++DI G + L+E+V P + + F
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF 47
Score = 37.7 bits (88), Expect = 0.009
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 672 KIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
K+ + VE V ++DI G + L+E+V P +
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVR 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 88.0 bits (218), Expect = 1e-18
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 498 LLHLDGF--DPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKIHAR 555
L+ DG + V+ ATNRP LD A++R R ++V LP+ E R + K
Sbjct: 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLC 296
Query: 556 SMSVER-DIRFELLARLCPNSTGAEIRSVCTEAGMFAIR-----ARRKVASE-------K 602
LAR+ +G+++ ++ +A + IR + +++
Sbjct: 297 KQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLS 356
Query: 603 DFLEAVNKV 611
DF E++ K+
Sbjct: 357 DFTESLKKI 365
Score = 87.6 bits (217), Expect = 1e-18
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 97 RFDDGAGGDNEVQRTMLELI----NQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 152
+FDD AG D ++ + E++ +PE F L P +G+LLFGPPG GKT+ A+AVA
Sbjct: 113 KFDDIAGQD-LAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAA 170
Query: 153 RTDACFIRVIGSELVQKYVGE 173
++A F + + L KYVGE
Sbjct: 171 ESNATFFNISAASLTSKYVGE 191
Score = 40.2 bits (94), Expect = 0.002
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 24/72 (33%)
Query: 61 AVANRTDACFIRVIGSELVQKYVGEGARM--------------------IDAIGGARFDD 100
AVA ++A F + + L KYVGEG ++ +D++ R
Sbjct: 167 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCER--- 223
Query: 101 GAGGDNEVQRTM 112
G+++ R +
Sbjct: 224 -REGEHDASRRL 234
Score = 39.8 bits (93), Expect = 0.003
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 458 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD------------ 505
+ + V+ V + DI G + L+E+V P L + F
Sbjct: 95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLF 154
Query: 506 -PRGNIKVLMA 515
P GN K ++A
Sbjct: 155 GPPGNGKTMLA 165
Score = 38.7 bits (90), Expect = 0.006
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 671 PKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
+ + V+ V + DI G + L+E+V P L
Sbjct: 95 SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLR 137
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 80.6 bits (199), Expect = 6e-17
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 106 NEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSE 165
V L+ Q + P VLL GPP +GKT A +A ++ FI++ +
Sbjct: 43 TRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99
Query: 166 LVQKYVGE 173
+ +
Sbjct: 100 KMIGFSET 107
Score = 70.5 bits (173), Expect = 2e-13
Identities = 15/123 (12%), Positives = 40/123 (32%), Gaps = 6/123 (4%)
Query: 491 REVVETPLLHLDGFDPRG-NIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHI 549
V++ L+ L P+G + ++ T+R D L + + +P++ +
Sbjct: 148 NLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EMEMLNAFSTTIH--VPNIATGEQL 204
Query: 550 FKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEAVN 609
+ + + R + ++ I+ + M + FL +
Sbjct: 205 LEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRV--RKFLALLR 262
Query: 610 KVA 612
+
Sbjct: 263 EEG 265
Score = 40.1 bits (94), Expect = 0.001
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 470 EEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFDPRGNIKVLM 514
E+ + I + + ++ + E + D + VL+
Sbjct: 25 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLL 69
Score = 37.0 bits (86), Expect = 0.013
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 683 EEKPDVTYSDIGGCKEQIEKLREVVETPLLH 713
E+ + I + + ++ + E +
Sbjct: 25 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQ 55
Score = 36.6 bits (85), Expect = 0.017
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 31 IARGAVANRTDACFIRVIGSELVQKYVGEGAVA 63
+A +A ++ FI++ + + +
Sbjct: 80 LAA-KIAEESNFPFIKICSPDKMIGFSETAKCQ 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.1 bits (207), Expect = 8e-17
Identities = 112/681 (16%), Positives = 204/681 (29%), Gaps = 174/681 (25%)
Query: 5 INQIH-----ISQTFNNISVKPLDIFNGHKNIARGAVANRTDACFIR-VIGSELVQKYVG 58
+ I F + V D K++ D + ++ E + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDC----KDV--------QD--MPKSILSKEEIDHIIM 56
Query: 59 EGAVANRTDACF--IRVIGSELVQKYVGEGAR-----MIDAIGGARFD------------ 99
+ T F + E+VQK+V E R ++ I +
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 100 DGAGGDNEVQRTMLELINQPEKFVNL-----GIEPPKGVLLFGPPGTGKTLCARAVANRT 154
D DN+V +++ + ++ L + P K VL+ G G+GKT A V
Sbjct: 117 DRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-- 172
Query: 155 DACFIRVIGSEL----VQKYVGERVLMEGCNN-------EGCGVPNRMDRI---VGGWTT 200
+ ++ ++ ++E + I +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 201 EVNEYPWVVALEQAGKFFCGGTLI----SDRYVLTA--AHC---VRSSKRQKDLIVVISE 251
E+ K + L+ + A C + + R K + +S
Sbjct: 233 ELRRL-------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSA 283
Query: 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
T I LT + + K D L P E T +P L +
Sbjct: 284 ATT-----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVL-TTNPRRLSII 333
Query: 312 GEKFTQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-------FPGFEAKLTGN 364
E T W V ++ + + ++ + V+ E R+ FP A +
Sbjct: 334 AESIRDGLATWDNWKHVNCD-KLTTIIESS-LNVLEPAEYRKMFDRLSVFPP-SAHIPTI 390
Query: 365 MMCAGYVEGGKDSCQVTLDE-ADIALLKSYGQGQYTKSI-------KAVEDDIQAVIKR- 415
++ + + K V +++ +L++ + + T SI K ++ A+ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSI 449
Query: 416 VNELTGIKESDTGLAPPALWDLTADKQTLQNEQPLQIHIPLPPKIDPTVTMMQVEEKPDV 475
V+ K D+ DL PP +D
Sbjct: 450 VDHYNIPKTFDS-------DDLI------------------PPYLD------------QY 472
Query: 476 TYSDIGGCKEQIEKLREVVETPLLHLD-GFDPRGNIKVLMATNRPDTLDPALMRPGRLDR 534
YS IG + IE + ++ LD F L R D+ L+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF--------LEQKIRHDST-AWNASGSILNT 523
Query: 535 KVEFGLPDLEG-RTHIFKIHARSMSVERDI-RFELLARLCPNSTGAEIRSVCTEAGMFAI 592
L L+ + +I + + I F L ++ N I S T+ A+
Sbjct: 524 -----LQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENL----ICSKYTDLLRIAL 572
Query: 593 RARRKVASEKDFLEAVNKVAR 613
A E F EA +V R
Sbjct: 573 MA----EDEAIFEEAHKQVQR 589
Score = 32.5 bits (73), Expect = 0.56
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 28/122 (22%)
Query: 603 DFLEAVNKVARCTKIINA-DSENPKYII-------NVKQFAKFVVD--------LADSVA 646
D +++ II + D+ + + + KFV + L +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 647 -----PTDIEEGMRVGVDR--NKYQIHIPLP-PKIDPTVTM----MQVEEKPDVTYSDIG 694
P+ + DR N Q+ ++ P + + +++ +V +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 695 GC 696
G
Sbjct: 160 GS 161
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 73.0 bits (179), Expect = 7e-16
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 611 VARCTKIINADSENPKYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLP 670
V + I+ E+ + ++ KFVV+ + + +++ G RV +++ I LP
Sbjct: 40 VGVVSDIL----EDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 95
Query: 671 PKIDPTVTMMQVEE 684
DP V +VEE
Sbjct: 96 TSKDPMVYGFEVEE 109
Score = 39.1 bits (91), Expect = 5e-04
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 446 NEQPLQIHIPLPPKIDPTVTMMQVEE 471
N+Q L I LP DP V +VEE
Sbjct: 84 NQQTLAIVNVLPTSKDPMVYGFEVEE 109
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 73.9 bits (181), Expect = 4e-15
Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 200 TEVNEYPW-VVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKD---LIVVISEHNRA 255
P+ +A G C GTLI+ +LT HCV ++ + V ++
Sbjct: 12 ANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDST 71
Query: 256 TVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKF 315
V + + + Y GA +D A++K DT + TV + Q+
Sbjct: 72 AVN----GSANMTEFYVPSGYINTGA--SQYDFAVIKTDTNI--GNTVGYRSIRQVTNLT 123
Query: 316 TQRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECR 352
+ G+ + V
Sbjct: 124 GTTI-KISGYPGDKMRSTGKVSQWEMSGSVTREDTNL 159
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 59.1 bits (144), Expect = 4e-11
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 332 GQIASDLRATQVPVMSNQECRQFPGFEAKLTGNMMCAGYVEGGKDSCQ 379
L+ +P++SN C+++ G K+ M+CAG G SC
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAG--ASGVSSCM 44
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 60.9 bits (147), Expect = 1e-10
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 18/173 (10%)
Query: 201 EVNEYPWVVALE---QAGKFFCGGTLISD---RYVLTAAHCV---RSSKRQKDLIVVISE 251
+ P + + G F C +++ V TA HC+ + ++ + +
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAY 61
Query: 252 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQL 311
+ + +++T ++ +G HD+ A+L+ + V
Sbjct: 62 DYGESEH----GVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVG----TAS 113
Query: 312 GEKFTQRTG-TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEAKLTG 363
F Q G +G + +L + ++ G +TG
Sbjct: 114 PIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSSTQGIPCNMTG 166
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 58.3 bits (140), Expect = 2e-09
Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 21/147 (14%)
Query: 200 TEVNEYPW--VVALE---QAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVI-SEHN 253
T+ + V ++ G F G ++ +LT H V ++ + S N
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ ++ K S + D+A++K + K V +
Sbjct: 72 QDNYPNGGFTAEQITKY------------SGEGDLAIVKFSPNEQNKHIGEVVKPATMSN 119
Query: 314 KFTQRTG---TVVGWGRVEESGQIASD 337
+T TV G+ + +
Sbjct: 120 NAETQTNQNITVTGYPGDKPVATMWES 146
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 55.4 bits (133), Expect = 2e-08
Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 200 TEVNEYPW--VVALE---QAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVIS-EHN 253
T+ + V ++ G F G ++ +LT H V ++ + N
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 254 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGE 313
+ ++ K S + D+A++K + K V +
Sbjct: 72 QDNYPNGGFTAEQITKY------------SGEGDLAIVKFSPNEQNKHIGEVVKPATMSN 119
Query: 314 KFTQRTGTVV 323
+ +
Sbjct: 120 NAETQVNQNI 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 55/289 (19%), Positives = 82/289 (28%), Gaps = 108/289 (37%)
Query: 433 ALWDLTADKQTLQN----------EQP--LQIHIPLPP--KIDPTVTMMQVEEKPDVTYS 478
+W+ AD P L IH +I + M E D
Sbjct: 1644 DVWN-RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD---- 1698
Query: 479 DIGGCKEQIEKLREVVE-TPLLHLDGFDPRGNIKVLMAT-NRPDTLDPALMRPGRLDRKV 536
G + + +E+ E + +G +L AT T PAL L K
Sbjct: 1699 ---GKLKTEKIFKEINEHSTSYTFRS--EKG---LLSATQF---T-QPALT----LMEKA 1742
Query: 537 EFGLPDLEGRTHIFKI-----H-----------ARSMSVERD------IRFELLARLCPN 574
F DL+ + I H A MS+E R + P
Sbjct: 1743 AFE--DLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-SLVEVVFYRGMTMQVAVPR 1799
Query: 575 STGAEIRSVCTEAGMFAIRARR---------------KVASEKD-FLEAVNKVARCTKII 618
+ GM AI R +V +E VN
Sbjct: 1800 DELGR-----SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--------Y 1846
Query: 619 NADSENPKYII-----------NVKQFAKF----VVDLADSVAPTDIEE 652
N EN +Y+ NV F K +++L S++ ++E
Sbjct: 1847 N--VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 42.0 bits (98), Expect = 7e-04
Identities = 53/339 (15%), Positives = 81/339 (23%), Gaps = 133/339 (39%)
Query: 139 PGTGKTLC-----ARAVANRTDACFIRVIG---SELVQKYVGERVLMEGCNNEGCGVPNR 190
G G L A+ V NR D F G ++V NN P
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI------------NN-----PVN 1671
Query: 191 MDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRY-VLTAAHCVRSSKRQKDLIVVI 249
+ GG G I + Y + V + + + I
Sbjct: 1672 LTIHFGGE---------------------KGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 250 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCL- 308
+EH+ + + ++ +L+ + Q AL +
Sbjct: 1711 NEHSTSYTFRSEKG------LLSATQ-FTQ--------PALT----------LMEKAAFE 1745
Query: 309 --------PQ--------LGE------------------------KFTQRTGTVVGWGRV 328
P LGE Q GR
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR- 1804
Query: 329 EESGQIASDLRATQVPVMSNQE-CRQFPGFEAKLTG------NMMCAG--YVEGGKDSCQ 379
G IA + +V +QE + K TG N YV G
Sbjct: 1805 SNYGMIA--INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD---L 1859
Query: 380 VTLDEADIALLKSYGQGQYTKSIKAVEDDIQAVIKRVNE 418
LD +L + I +E ++ V
Sbjct: 1860 RALDTV-TNVLNFIK----LQKIDIIELQKSLSLEEVEG 1893
Score = 39.3 bits (91), Expect = 0.005
Identities = 49/310 (15%), Positives = 86/310 (27%), Gaps = 107/310 (34%)
Query: 387 IALLKSYGQ--GQYTKSIKAVEDDIQAVIKRVNELTGIKESDTGLAPPALWD--LTADKQ 442
+ K G G+ +K Q ++ V I E+D+ W+ + ++
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAV----AIAETDS-------WESFFVSVRK 298
Query: 443 TL----------QNEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLRE 492
+ P + LPP I + S E
Sbjct: 299 AITVLFFIGVRCYEAYP---NTSLPPSI--------------LEDSLENN---------E 332
Query: 493 VVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRTHIFKI 552
V +P+L + + TN L ++VE L + G + +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNS--HLPA--------GKQVEISLVN--GAKN-LVV 379
Query: 553 --HARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA---RRKVASEKDFLEA 607
+S L L +R +G+ R RK+ FL
Sbjct: 380 SGPPQS-----------LYGLN-----LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP- 422
Query: 608 VNKV---------ARCTKIINADSENPKYIINVKQFAKFVVD---------LADSVAPTD 649
V + +IN D N K V D L+ S++
Sbjct: 423 ---VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 650 IEEGMRVGVD 659
++ +R+ V
Sbjct: 480 VDCIIRLPVK 489
Score = 37.7 bits (87), Expect = 0.018
Identities = 85/459 (18%), Positives = 129/459 (28%), Gaps = 172/459 (37%)
Query: 2 LELINQI--HISQ--------TFNNISVKPLDIFNGHKNIARG----AVA----NRTDAC 43
EL+ + ++S F+ + L F G A+A D
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIHALAAKLLQENDTT 115
Query: 44 FIRVIGSELVQKYVGEGAVANRTDACFIRVIGSELVQKYVGEGARMIDAI-GG-----AR 97
++ EL++ Y+ +A R F + S L + A+++ AI GG
Sbjct: 116 LVKT--KELIKNYITARIMAKRP---FDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDY 169
Query: 98 FDD---------GAGGD--NEVQRTMLELINQP---EKFVNLGIE-----------PPKG 132
F++ GD T+ ELI EK G+ P K
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 133 VLLFGP------------------------PG------TGKTLC------ARAVAN-RTD 155
LL P PG G T A A+A +
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 156 ACF-------IRV---IGSELVQKYVGERVL----MEGCNNEGCGVPNRMDRIVGGWTTE 201
F I V IG + L +E GVP+ M I +
Sbjct: 290 ESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 202 VNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQ 261
V +Y + + T +H + V IS N
Sbjct: 349 VQDY-----VNK-----------------TNSHLPAGKQ------VEISLVN-------- 372
Query: 262 IETRRVVKVLT-HPK--YNAQGAKSHDHDI-ALLKLD---TPL-EFKPTVS----PVCLP 309
+ + V++ P+ Y G A LD P E K S PV P
Sbjct: 373 --GAKNL-VVSGPPQSLY---GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 310 ---QLGEKFTQRTGTVVGWGRVEESGQIASDLRATQVPV 345
L + + V + A D++ +PV
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFN---AKDIQ---IPV 459
Score = 31.2 bits (70), Expect = 1.7
Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 73/213 (34%)
Query: 1 MLELIN------QIHISQTFNNISV---KPLDI--FNGHKN----------------IAR 33
ML + N Q ++++T N + K ++I NG KN + +
Sbjct: 338 MLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 34 GAVANRTDACFIRVIGSELVQKYVGEGAVANRTDACFIRV----------IGSELVQKYV 83
+ D R+ SE +K +NR F+ V S+L+ K +
Sbjct: 396 AKAPSGLDQS--RIPFSE--RKLK----FSNR----FLPVASPFHSHLLVPASDLINKDL 443
Query: 84 GEGARMIDA--IGGARFD--DGA---GGDNEVQRTMLELI-NQP---EKFVNLGIEPPKG 132
+ +A I +D DG+ + +++ I P E
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF---KATH 500
Query: 133 VLLFGP---PGTGKTLCARAVANRTDACFIRVI 162
+L FGP G G L R D +RVI
Sbjct: 501 ILDFGPGGASGLGV-LTHRNK----DGTGVRVI 528
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 50.0 bits (119), Expect = 9e-07
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Query: 200 TEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYE 259
+ Y V + G G LI ++T H R + + I+ N +
Sbjct: 31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQN----RD 86
Query: 260 TQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKPTVSPVCLPQLGEKFTQRT 319
+ + + D+A++KL + + + + +
Sbjct: 87 AEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAK 146
Query: 320 GTVV 323
G
Sbjct: 147 GDKY 150
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 45.4 bits (107), Expect = 5e-05
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 81 KYVGEGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGI---------EPPK 131
K + R+ G ++ L+ Q G+ +
Sbjct: 7 KSTTKTQRIASH--SHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGR 64
Query: 132 GVLLFGPPGTGKTLCARAVAN--RTDACFIRVIGSELVQKYV-GERVLMEGC 180
VLL GPPGTGKT A A+A + F ++GSE+ + VLME
Sbjct: 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENF 116
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 45.2 bits (108), Expect = 6e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161
++L+GPPGTGKT A +A +A R+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 44.3 bits (103), Expect = 6e-05
Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 208 VVALEQAGKFFCGGTLISDR------YVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQ 261
V A ++G C G+L+++ Y LTA HC + IVV + +T
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 262 IETRRVVKVLTHPKYNAQG---AKSHDHDIALLKLDTP 296
+ + + A D LL+L+
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNA 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 44.9 bits (106), Expect = 7e-05
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 104 GDNEVQRTMLELINQPEKFVNLGIEPP--------KGVLLFGPPGTGKTLCARAVAN 152
G+ + + E + + +L+GPPG GKT A VA
Sbjct: 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 43.2 bits (101), Expect = 2e-04
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 110 RTMLELINQPEKFVNLGIEPPKGVL---LFGPPGTGKTLCARAVANRT-------DACFI 159
R L+ LG+ L G PGTGKT A +A +
Sbjct: 44 RETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLV 103
Query: 160 RVIGSELVQKYVGE 173
V +LV +Y+G
Sbjct: 104 SVTRDDLVGQYIGH 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 41.8 bits (98), Expect = 3e-04
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 126 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160
G++ P +++ G P TGKT ++A+A +
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35
>3h43_A Proteasome-activating nucleotidase; regulatory particle,
nucleosidase, ATP-binding, cytoplasm,
nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus
jannaschii}
Length = 85
Score = 39.0 bits (91), Expect = 3e-04
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 626 KYIINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTV 677
K ++ F+V+++ V P D+ G RV +++ + LP
Sbjct: 32 KVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPELEHHHH 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 40.4 bits (95), Expect = 5e-04
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 96 ARFDDGAGGDNEVQRTMLELINQPEKFV-NLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
A D N Q L I FV N E KG+ G PG GKT A A
Sbjct: 7 ANLDT-YHPKNVSQNRALLTI---RVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 87 ARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLC 146
M I A D D+ + + ++ + KG+ L G G GKT
Sbjct: 13 MFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYL 70
Query: 147 ARAVAN 152
A+AN
Sbjct: 71 LAAIAN 76
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 39.8 bits (93), Expect = 0.002
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 87 ARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLC 146
+ + D + +++ E++ + KG+ L+G G GK+
Sbjct: 112 VSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYL 168
Query: 147 ARAVAN 152
A+A+
Sbjct: 169 LAAMAH 174
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 39.8 bits (93), Expect = 0.002
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 132 GVLLFGPPGTGKTLCARAVA 151
GVL+FG GTGK+ RA+A
Sbjct: 47 GVLVFGDRGTGKSTAVRALA 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 39.7 bits (92), Expect = 0.002
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANR------TDACFIRVIGSELVQKYVGERVLMEGCN 181
E P + ++G GTGKT + V ++ + + ++ Y L+E +
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLD 102
Query: 182 NEGCGVPNRMDRIVGGWTTEVNEY--PWVVALE 212
+ + + V +Y V+ L+
Sbjct: 103 VKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLD 135
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 39.0 bits (90), Expect = 0.003
Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 14/98 (14%)
Query: 446 NEQPLQIHIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIEKLREVVETPLLHLDGFD 505
NE + + T+ ++ +E++ L + + L +
Sbjct: 144 NEALTVVEAGTFEAVGEISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPE 203
Query: 506 PRGNIKVLMATNRPDTLDPALMRPG---RLDRKVEFGL 540
D P +RPG +D K +
Sbjct: 204 ALN-----------DDTRPRKLRPGDSLLVDTKAGYAF 230
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 39.0 bits (90), Expect = 0.004
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 11/163 (6%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANR---------TDACFIRVIGSELVQKYVGERVLME 178
E P LL+G GTGKT AR V R I V Y + E
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101
Query: 179 --GCNNEGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCV 236
G G+ +++ L++ Y +T +
Sbjct: 102 AVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE 161
Query: 237 RSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQ 279
+ L+ + + E ++++ L P Y A
Sbjct: 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAP 204
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 39.0 bits (90), Expect = 0.005
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANR 153
E L G GTGKT ++ + N
Sbjct: 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 39.0 bits (90), Expect = 0.005
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 120 EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN----RTDACFIRVIGSELVQKYVGERV 175
++ L G PGTGKT+ R + +T A F+ + G +
Sbjct: 34 GNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT---AI 90
Query: 176 LMEGCNNEGCGVPNR 190
+ E + P R
Sbjct: 91 IGEIARSLNIPFPRR 105
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 37.4 bits (87), Expect = 0.008
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 33/129 (25%)
Query: 199 TTEVNEYPWVVALEQAGKFFCGGT--LISDRYVLTAAHCVRSSKRQKDLIVVISEHNRAT 256
+ N +P+ F T +I ++T H + K + H
Sbjct: 8 VKDTNNFPY-----NGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITA----HPNGD 58
Query: 257 VYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP--------LEFKPTVSPVCL 308
I + + D DI+++ ++ F V
Sbjct: 59 KGNGGIYKIKSI-----------SDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNF 107
Query: 309 ---PQLGEK 314
++ +K
Sbjct: 108 AKDAKVDDK 116
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 37.6 bits (88), Expect = 0.008
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 134 LLFGPPGTGKTLCARAVANR 153
L GPPGTGKT A A+A
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 38.2 bits (89), Expect = 0.010
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 133 VLLFGPPGTGKTLCARAVANR-TDACFIRV 161
V L GPPG K+L AR + +A
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEY 73
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 36.0 bits (84), Expect = 0.013
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 133 VLLFGPPGTGKTLCARAV---ANRTDACFIRV 161
V L+G PGTG+ AR + F+
Sbjct: 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYR 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 37.3 bits (87), Expect = 0.014
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 134 LLFGPPGTGKTLCARAVAN 152
L GPPGTGKT A A+A
Sbjct: 42 LFSGPPGTGKTATAIALAR 60
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 36.4 bits (84), Expect = 0.015
Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 26/105 (24%)
Query: 221 GTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 280
G ++ +LT H ++ K + + + + K++
Sbjct: 26 GFVVGKNTILTNKHVSKNYKVGDRITAHPNSD------KGNGGIYSIKKII--------- 70
Query: 281 AKSHDHDIALLKLD--------TPLEFKPTVSPVCL---PQLGEK 314
D+++++++ F V+P + GE+
Sbjct: 71 NYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGER 115
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 37.2 bits (87), Expect = 0.016
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 110 RTMLELINQPEKFVNLGI---------EPPKGVLLFGPPGTGKTLCARAVAN 152
+T+ E I Q L + EP + +LLFGPPG GKT A +A+
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 35.8 bits (82), Expect = 0.019
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERVLMEGCNNEGCGVPNRMD 192
+LL G PG GKT + +A+++ +I V E L +G + E D
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYIN------VGDLAREEQLYDGYDEEYDCPILDED 67
Query: 193 RIVGGWTTEVNEYPWVVALEQAGKF 217
R+V ++ E +V F
Sbjct: 68 RVVDELDNQMREGGVIVDYHGCDFF 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 36.4 bits (83), Expect = 0.020
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERVLMEGCNNEGCGV 187
+ P +LL G G GKT R + + G ++ L + G
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQ---EYGKDS 86
Query: 188 PNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDLIV 247
G + GTL + A +++ + L +
Sbjct: 87 VEYTKDFAGKMVESLVTK----LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLAL 142
Query: 248 V 248
+
Sbjct: 143 I 143
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.023
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 25/54 (46%)
Query: 484 KEQIEKLREVVETPLLHLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVE 537
K+ ++KL + L K L A D+ PAL + +E
Sbjct: 19 KQALKKL----QASL------------K-LYA---DDSA-PALA----IKATME 47
Score = 29.1 bits (64), Expect = 3.1
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 601 EKDFLEAVNKVARCTKIINADSENPKYIIN 630
EK +A+ K+ K+ DS P I
Sbjct: 18 EK---QALKKLQASLKLYADDSA-PALAIK 43
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 35.8 bits (82), Expect = 0.023
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161
EP + V++ G G+GKT A VA+ T F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 35.8 bits (83), Expect = 0.025
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 28/124 (22%)
Query: 200 TEVNEYPWVVALEQAGKFFCGGT--LISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATV 257
T+ + P+ + F GGT ++ ++T H +S+ +
Sbjct: 8 TDATKEPY-----NSVVAFVGGTGVVVGKNTIVTNKHIAKSNDI-----FKNRVSAHHSS 57
Query: 258 YETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDTP----LEFKPTVSPVCL---PQ 310
V ++ D+A++ + L F VS +
Sbjct: 58 KGKGGGNYDVKDIV---------EYPGKEDLAIVHVHETSTEGLNFNKNVSYTKFADGAK 108
Query: 311 LGEK 314
+ ++
Sbjct: 109 VKDR 112
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 35.8 bits (82), Expect = 0.025
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166
+LL G PG+GK+ A A+AN + +L
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 36.2 bits (84), Expect = 0.027
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 134 LLFGPPGTGKTLCARAVAN 152
L GPPG GKT A A+A
Sbjct: 50 LFAGPPGVGKTTAALALAR 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 36.0 bits (84), Expect = 0.031
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 110 RTMLELINQPEKFVNLGI---------EPPKGVLLFGPPGTGKTLCARAVAN 152
+++ E I Q L + E VLL GPPG GKT A +A+
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 35.7 bits (81), Expect = 0.039
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 105 DNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGS 164
D + + L + +E P LL G PG+GKT A+ T I +
Sbjct: 9 DKQFEN-RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND 67
Query: 165 ELVQKYVGERVLMEGCNNE 183
Q++ L++ +
Sbjct: 68 TFKQQHPNFDELVKLYEKD 86
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 35.0 bits (80), Expect = 0.051
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160
P +++ G G+GK+ A+A FI
Sbjct: 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 35.8 bits (83), Expect = 0.054
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 114 ELINQPE--KFVNLGIEPPKGVLLFGPPGTGKTLCARAVA 151
++I Q + + + VLL G PGTGK++ +A+A
Sbjct: 42 QVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMA 81
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 34.9 bits (79), Expect = 0.077
Identities = 7/66 (10%), Positives = 14/66 (21%), Gaps = 10/66 (15%)
Query: 128 EPPKGVLLFGPPGTGKTLCARAVANR----------TDACFIRVIGSELVQKYVGERVLM 177
K + + K V + +I + EL +
Sbjct: 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW 102
Query: 178 EGCNNE 183
+ E
Sbjct: 103 FAISKE 108
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 34.0 bits (78), Expect = 0.082
Identities = 18/145 (12%), Positives = 31/145 (21%), Gaps = 40/145 (27%)
Query: 219 CGGTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNA 278
S Y LTA HC + T + T +
Sbjct: 18 FNVRSGSTYYFLTAGHCTDGA---------------TTWWANSARTTVLGTT-------- 54
Query: 279 QGAKSHDHDIALLKLDTPLEFKPTV---------------SPVCLPQLGEKFTQRTGTVV 323
G+ ++D +++ K V G +G+V
Sbjct: 55 SGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTR--RGSTTGTHSGSVT 112
Query: 324 GWGRVEESGQIASDLRATQVPVMSN 348
G + V +
Sbjct: 113 ALNATVNYGGGDVVYGMIRTNVCAE 137
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 33.3 bits (77), Expect = 0.085
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 133 VLLFGPPGTGKTLCARAV 150
V L G G+ AR
Sbjct: 30 VFLTGEAGSPFETVARYF 47
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 34.8 bits (81), Expect = 0.087
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 133 VLLFGPPGTGKTLCARAVAN 152
+L GP G GKT A ++
Sbjct: 58 ILFSGPAGLGKTTLANIISY 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 34.8 bits (81), Expect = 0.089
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRV 161
+LL G PG KTL +A D F R+
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDFHRI 77
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 33.6 bits (76), Expect = 0.11
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERVLMEGCNNE 183
+L+ G PGTGKT A +A D V K V E + E
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQH-----LEVGKLVKENHFYTEYDTE 58
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 33.2 bits (75), Expect = 0.16
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161
+ ++L G GK+ R + + ++
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 33.5 bits (77), Expect = 0.23
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 114 ELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
E I++ ++ G P +++ G PG GKT +A+
Sbjct: 28 ETIDRLQQIAKDGNMP--HMIISGMPGIGKTTSVHCLAHE 65
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 33.1 bits (76), Expect = 0.25
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 50 SELVQKYVGEGAVANRTDACFIRVIGSELVQKYVGEGARM--IDAIGGARFDDGAGGDNE 107
Q+ +G+ + +R L + + E + + + + G +
Sbjct: 21 QIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEEN 80
Query: 108 VQRTMLELINQ--PEKFVNLGIEPPKGVLLFGPPGTGKT 144
V + E++ P K ++LFG G GKT
Sbjct: 81 VVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKT 119
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 32.7 bits (74), Expect = 0.25
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIR 160
+L G G+GK+ A VA++ A F+
Sbjct: 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 32.6 bits (74), Expect = 0.28
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFI 159
++ GP G GK+ + +A + D
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY 31
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 33.3 bits (76), Expect = 0.29
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 85 EGARMIDAIGGARFDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPK-----GVLLFGPP 139
GA + G R +++R E + ++ G+ P+ +L+ G
Sbjct: 10 GGAPFKRFLRGTRI----VSGGKLKRMTRE---KAKQVTVAGVPMPRDAEPRHLLVNGAT 62
Query: 140 GTGKTLCARAV----ANRTDACFIRVIGSELVQKYVGERVLM 177
GTGK++ R + R D I +++ K+ ++ ++
Sbjct: 63 GTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDII 104
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 33.0 bits (75), Expect = 0.34
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 90 IDAIGGAR--FDDGAGGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCA 147
+D R G Q + + G + VL+ G PGTGKT A
Sbjct: 33 LDDALEPRQASQGMVG-----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87
Query: 148 RAVAN--RTDACFIRVIGSELVQKYVGERV-LMEGCNNEGC 185
+A D F + GSE+ + + L +
Sbjct: 88 MGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIG 128
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 32.9 bits (76), Expect = 0.38
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 135 LFGPPGTGKTLCARAVANRTDACFIRV 161
L GPPG GKT A+++A F+R+
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGRKFVRI 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.9 bits (72), Expect = 0.38
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGERV 175
+++ G PG GKT + + R I E+ +R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 32.8 bits (75), Expect = 0.40
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 114 ELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
E+I KFV+ G P +L +GPPGTGKT A+A
Sbjct: 32 EVITTVRKFVDEGKLP--HLLFYGPPGTGKTSTIVALARE 69
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.6 bits (74), Expect = 0.60
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 122 FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD 155
++ + + ++L GPPG+GKT+ +
Sbjct: 1296 VLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFP 1329
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 0.70
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 120 EKFVNLGIEPPKGVLLFGPPGTGKTLCARAVAN 152
+ E V + GP GTG T + +
Sbjct: 35 NIVMKAIKEKKHHVTINGPAGTGATTLTKFIIE 67
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.8 bits (70), Expect = 0.76
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFI 159
++L GP K+ A ++ I
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELKYPII 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 31.8 bits (72), Expect = 0.83
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 114 ELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
EL N + + + P +LL+GP GTGK A+
Sbjct: 21 ELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLES 59
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two
component system, AAA domain, NTRC family, DNA-binding;
HET: ATP; 3.0A {Salmonella typhimurium}
Length = 304
Score = 31.3 bits (72), Expect = 1.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 133 VLLFGPPGTGKTLCARAV---ANRTDACFIRV 161
VL+ G GTGK L ARA+ + R+D + +
Sbjct: 28 VLIHGDSGTGKELVARALHACSARSDRPLVTL 59
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 31.2 bits (70), Expect = 1.1
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 129 PPKGVLLFGPPGTGK-TLCAR 148
V+ G G+GK TL
Sbjct: 13 ASMIVVFVGTAGSGKTTLTGE 33
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 30.4 bits (68), Expect = 1.2
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 131 KGVLLFGPPGTGKTLCARAVANR------TDACFIRVIGSELVQKYVGERVLMEGCNNEG 184
GVL+ G GK+ + A+ +R D ++ ++L+ V G
Sbjct: 17 MGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCP--SVANGYILITG 74
Query: 185 CGVPNRMDRIVGGWTTEVNEYPWVVALEQ 213
G+ + +E ++L +
Sbjct: 75 IGIIDVPKLFGLDAVVNQHEVHLSISLVK 103
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator, enhancer
binding protein, PSPF; 1.7A {Escherichia coli} PDB:
2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 30.9 bits (71), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 12/46 (26%)
Query: 133 VLLFGPPGTGKTLCARAV---ANRTDACFIRV---------IGSEL 166
VL+ G GTGK L A + ++R FI + + SEL
Sbjct: 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 126 GIEPPKGVLLFGPPGTGK-TLC 146
G P ++GP +GK TL
Sbjct: 16 GFAPGVLTQVYGPYASGKTTLA 37
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 31.1 bits (71), Expect = 1.2
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGERV 175
+LL GP G+GKTL A+ +A D + L + YVGE V
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDV 118
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 30.9 bits (71), Expect = 1.4
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 133 VLLFGPPGTGKTLCARAV---ANRTDACFIRV 161
VL+ G G GK + AR + ++R+ F+ +
Sbjct: 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVAL 194
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 31.1 bits (71), Expect = 1.5
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 130 PKGVLLF-GPPGTGKTLCARAVANRTDACFIRVIGSE 165
P G LF GP G GKT ++ +R SE
Sbjct: 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 31.0 bits (71), Expect = 1.5
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGERV 175
+LL GP G+GKTL A +A D F + L + YVGE V
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.8 bits (69), Expect = 1.5
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 116 INQPEKFVN---------LGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL 166
+ E + +E LL G GK+ RA N I
Sbjct: 8 KTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYA 67
Query: 167 VQKYVGERVLME 178
+ ++ L++
Sbjct: 68 ERGHITREELIK 79
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.1 bits (67), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 131 KGVLLFGPPGTGKTLCARAVANRTDACFIRVIG 163
+ V L GPPG GKT + + + V G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 30.9 bits (70), Expect = 1.6
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 114 ELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
+ +K + P +L +GPPGTGKT A+
Sbjct: 44 HAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKE 81
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 30.2 bits (68), Expect = 1.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 126 GIEPPKGVLLFGPPGTGKTL 145
G VLL G GTGKT
Sbjct: 26 GFPEGTTVLLTGGTGTGKTT 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 30.3 bits (69), Expect = 2.1
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 129 PPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGE 173
PK +L+ GP G GKT AR +A +A FI+V ++ + YVG+
Sbjct: 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 2.2
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 103 GGDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
+ L N+ E N + +L G PG+GK+ A +
Sbjct: 3 DTHKLADDVLQLLDNRIED--NYRVCV----ILVGSPGSGKSTIAEELCQI 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 29.6 bits (67), Expect = 3.4
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 130 PKGVLLFGPPGTGKTLCARAVANRTDACFIRV 161
PK +L+ GP G GKT AR +A +A FI+V
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 29.6 bits (66), Expect = 4.2
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 129 PPK--GVLLFGPPGTGKTLCARAVAN 152
PK L GP +GKT A A+
Sbjct: 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 28.8 bits (65), Expect = 4.2
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 26/84 (30%)
Query: 221 GTLISDRYVLTAAHCVRSSKRQKDLIVVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 280
G + ++TAAH V ++ V + +YE KV P
Sbjct: 25 GFFSGN-DIVTAAHVVGNNTF-----VNVCYEGL--MYEA--------KVRYMP------ 62
Query: 281 AKSHDHDIALLKLDTPLEFKPTVS 304
+ DIA + L +
Sbjct: 63 ----EKDIAFITCPGDLHPTARLK 82
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 29.1 bits (65), Expect = 4.2
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 13/125 (10%)
Query: 186 GVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRQKDL 245
+P + V + Y + + G+ G LI VLT H + + D
Sbjct: 24 NLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFAN--GDP 81
Query: 246 IVVISEHNRATVYETQIETRR----VVKVLTHPKYNAQGAKSHDHDIALLKLDTPLEFKP 301
V + T ET V ++L P D+AL++L
Sbjct: 82 SKVSFRPSINTDDNGNTETPYGEYEVKEILQEP-------FGAGVDLALIRLKPDQNGVS 134
Query: 302 TVSPV 306
+
Sbjct: 135 LGDKI 139
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 29.3 bits (66), Expect = 4.2
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 134 LLFGPPGTGKTLCARAVA 151
L+ PG G A++
Sbjct: 28 LIQALPGMGDDALIYALS 45
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 29.0 bits (66), Expect = 4.4
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 130 PKGVLLFGPPGTGK-TLCARAV 150
P V + G PG+GK T CA V
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIV 27
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.5 bits (66), Expect = 4.6
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 126 GIEPPKGVLLFGPPGTGKT-LCARAVAN 152
G +L G GTGKT L +R V N
Sbjct: 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304
Score = 29.5 bits (66), Expect = 4.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 126 GIEPPKGVLLFGPPGTGKTL 145
G+ + L+ G GTGKTL
Sbjct: 35 GLPIGRSTLVSGTSGTGKTL 54
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 28.8 bits (65), Expect = 4.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 126 GIEPPKGVLLFGPPGTGKTL 145
GI + L G PGTGKT+
Sbjct: 19 GIPQGFFIALTGEPGTGKTI 38
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 28.7 bits (65), Expect = 5.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFI 159
+L G PG+GK+ R +A +
Sbjct: 5 AVLVGLPGSGKSTIGRRLAKALGVGLL 31
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 5.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 122 FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVI 162
+ +G++L GPPG+GKT+ + + I
Sbjct: 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGI 1299
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.4 bits (63), Expect = 6.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFI 159
+ + GP G GKT A + R F+
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 1.90A
{Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Length = 307
Score = 28.6 bits (64), Expect = 6.4
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 10/91 (10%)
Query: 548 HIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVASEKDFLEA 607
+F I + S ++E + E + R + + V E F + ARR K+F
Sbjct: 67 RVFGIVSISPAMEVEASLEKINRTALLMFRKKAKEVGKERPKFRVTARR---ITKEFPLD 123
Query: 608 VNKVARC--TKIINA-----DSENPKYIINV 631
++ I+N D +N I +
Sbjct: 124 SLEIQAKVGEYILNNENCEVDLKNYDIEIGI 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 28.3 bits (64), Expect = 6.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFI 159
+ + + L GP G GK+ R +A + + F
Sbjct: 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 28.3 bits (64), Expect = 7.0
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 130 PKGVLLFGPPGTGK-TLCARAV 150
+ + G PG GK T C + V
Sbjct: 15 VSVIFVLGGPGAGKGTQCEKLV 36
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 28.5 bits (64), Expect = 7.0
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 130 PKG--VLLFGPPGTGKTL 145
P+ VLL G PGTGKT+
Sbjct: 21 PERNVVLLSGGPGTGKTI 38
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 28.7 bits (64), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVI 162
++L G PG GK+ ++ +A I VI
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVI 36
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 7.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 126 GIEPPKGVLLFGPPGTGKTLCARAVA 151
+ L P G GK++ A +A
Sbjct: 26 NMVAGTVGALVSPGGAGKSMLALQLA 51
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 28.4 bits (63), Expect = 7.3
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 131 KGVLLFGPPGTGKTLCARAVANR------TDACFIRVIGSELV 167
GVL+ G G GK+ A + R D + + +
Sbjct: 35 LGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTI 77
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 28.3 bits (64), Expect = 7.3
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 130 PKGVLLFGPPGTGK-TLCAR 148
+ + G PG+GK T C +
Sbjct: 9 TNIIFVVGGPGSGKGTQCEK 28
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 28.3 bits (64), Expect = 7.3
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 130 PKGVLLFGPPGTGK-TLCARAV 150
P V + G PG GK T CAR V
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIV 24
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 28.3 bits (64), Expect = 7.5
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 130 PKGVLLFGPPGTGK-TLCAR 148
K + + G PG+GK T C +
Sbjct: 12 CKIIFIIGGPGSGKGTQCEK 31
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 27.9 bits (63), Expect = 7.7
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 130 PKGVLLFGPPGTGKTLCARAVANRTDACFI 159
+ + + G G G T R +A F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.6 bits (63), Expect = 7.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 104 GDNEVQRTMLELINQPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANR 153
N + + L EK E P+ V++ G TGKT +R + +
Sbjct: 113 KPNHTMKYIYNLHFMLEKIRMSNFEGPR-VVIVGGSQTGKTSLSRTLCSY 161
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 28.5 bits (64), Expect = 8.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 114 ELINQPEKFVNLGIEPPKGVLLFGP-PGTGKTLCARAVANRTDACFIRVIGSE 165
+ + G P ++L P PGTGKT A+A+ + +A + V GS+
Sbjct: 33 FDKETFKSITSKGKIP--HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 28.3 bits (63), Expect = 8.7
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 133 VLLFGPPGTGKTLCARAVANRTDACFIRVIGSEL---VQKYVGERVLMEGCNNEGCG--V 187
+ GPP TGK++ ++ + + + + R + C
Sbjct: 129 LAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYF 188
Query: 188 PNRMDRIVGGWTTEVN 203
+ + G+ ++
Sbjct: 189 DTYLRNALDGYPVSID 204
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+
ATPase, response regulator, transcriptional activator,
ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB:
1zit_A 2jrl_A
Length = 368
Score = 28.2 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 133 VLLFGPPGTGKTLCARAV---ANRTDACFIRV 161
VL+ G GTGK + AR + + R A F+ +
Sbjct: 155 VLITGESGTGKEIVARLIHRYSGRKGA-FVDL 185
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.9 bits (63), Expect = 9.4
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 127 IEPPKGVLLFGPPGTGKTLCARAVANRTDACFI 159
+ + L G G GKT +A T
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,090,504
Number of extensions: 712966
Number of successful extensions: 2369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 340
Length of query: 713
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 613
Effective length of database: 3,909,693
Effective search space: 2396641809
Effective search space used: 2396641809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)