BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6524
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 69/107 (64%), Gaps = 3/107 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG TSEGG+ +V VP++S CRA Y I +M+CAG G DSCQGD
Sbjct: 130 VTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA-DYGADEILDSMICAGVPEGGKDSCQGD 188
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
SGGPL +D G L GIVSWG GC RPGYPGVYT V+ ++ W+K N
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S ++IV G+ D SV + + + VS I+ H +FD N ++DI+LLKL ++F +V
Sbjct: 56 SGLQIVAGELDMSVNEGSEQ---IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNV 112
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
PI LP +G + V GWG TSEGG+ +V VP++S CRA Y I
Sbjct: 113 APIALPEQGHTATGDV-IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRA-DYGADEILD 170
Query: 301 NMLCAG--RGEMDSCQ 314
+M+CAG G DSCQ
Sbjct: 171 SMICAGVPEGGKDSCQ 186
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 19/165 (11%)
Query: 30 IVGGRPTGVNKYPW---VARLVYDGNFH-CGASLINEDYVLTAAHCVR---RLKRSKIRI 82
IVGG + ++P+ +FH CGAS+ NE+Y +TA HCV S ++I
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
V G+ D SV + + + VS I+ H +FD N ++DI+LLKL ++F +V PI L
Sbjct: 61 VAGELDMSVNEGSEQ---IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117
Query: 143 PPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVL 187
P + HT + V +GT +G + V K+ + L
Sbjct: 118 P--EQGHTATGDVI-------VTGWGTTSEGGNTPDVLQKVTVPL 153
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 396
GK+ TV GWG T G A E +VPI+S C + ++I P M CAG G +D
Sbjct: 243 GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGID 302
Query: 397 SCQGDSGGPLIIND----VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+CQGDSGGP + D R+ L GIVSWG GC PGVYT+V+ + W+ + +K
Sbjct: 303 ACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGD 86
RIVGGR T + ++PW L YDG CG SL++ D+VLTAAHC R S+ R+ G
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGA 176
Query: 87 YDQSVTTETAEPTMMR-AVSSIVRH------RHFDVNNYNHDIALLKLRKPVSFTKSVRP 139
Q A P ++ V ++V H R + ++DIAL+ L P+ T+ ++P
Sbjct: 177 VAQ------ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQP 230
Query: 140 ICLP 143
+CLP
Sbjct: 231 VCLP 234
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 20/148 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMR-AVSSIVRH------RHFDVNNYNHDIALLKLR 231
V S+ R+ G Q A P ++ V ++V H R + ++DIAL+ L
Sbjct: 166 VLSRWRVFAGAVAQ------ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLS 219
Query: 232 KPVSFTKSVRPICLPPDN---IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC 288
P+ T+ ++P+CLP +D GK+ TV GWG T G A E +VPI+S C
Sbjct: 220 SPLPLTEYIQPVCLPAAGQALVD--GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC 277
Query: 289 RAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ ++I P M CAG G +D+CQ
Sbjct: 278 NGADFYGNQIKPKMFCAGYPEGGIDACQ 305
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 396
GK+ TV GWG T G A E +VPI+S C + ++I P M CAG G +D
Sbjct: 243 GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGID 302
Query: 397 SCQGDSGGPLIIND----VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+CQGDSGGP + D R+ L GIVSWG GC PGVYT+V+ + W+ + +K
Sbjct: 303 ACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 13/123 (10%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGD 86
RIVGGR T + ++PW L YDG CG SL++ D+VLTAAHC R S+ R+ G
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG- 175
Query: 87 YDQSVTTETAEPTMMRAVSSIVRH------RHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
+ + + V ++V H R + ++DIAL+ L P+ T+ ++P+
Sbjct: 176 ----AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPV 231
Query: 141 CLP 143
CLP
Sbjct: 232 CLP 234
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRH------RHFDVNNYNHDIALLKLRK 232
V S+ R+ G + + + V ++V H R + ++DIAL+ L
Sbjct: 166 VLSRWRVFAG-----AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSS 220
Query: 233 PVSFTKSVRPICLPPDN---IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
P+ T+ ++P+CLP +D GK+ TV GWG T G A E +VPI+S C
Sbjct: 221 PLPLTEYIQPVCLPAAGQALVD--GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN 278
Query: 290 AMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ ++I P M CAG G +D+CQ
Sbjct: 279 GADFYGNQIKPKMFCAGYPEGGIDACQ 305
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 9/135 (6%)
Query: 316 LAPRRPTESHLHFHFLS-TDIDP-SGKMGTVVGWGRTSEGGSLA-TEALEVQVPILSPGQ 372
L+ P+ ++ + L+ + DP +G TV GWG TSEGGS L+V VPI+S
Sbjct: 90 LSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRAT 149
Query: 373 CRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPG 430
CRA +Y S IT M CAG G DSCQGDSGGP++ + L+G VSWG GC RP
Sbjct: 150 CRA-QYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS---NTLIGAVSWGNGCARPN 205
Query: 431 YPGVYTRVNRYLSWV 445
Y GVY V S++
Sbjct: 206 YSGVYASVGALRSFI 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 203 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP-SGKMGTVVG 261
+ ++SS+ H + NN +D+A+LKL + ++ L DP +G TV G
Sbjct: 65 ITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAG 122
Query: 262 WGRTSEGGSLA-TEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
WG TSEGGS L+V VPI+S CRA +Y S IT M CAG G DSCQ
Sbjct: 123 WGATSEGGSSTPVNLLKVTVPIVSRATCRA-QYGTSAITNQMFCAGVSSGGKDSCQ 177
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 31 VGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
VGG +P++ + +G CG SL+N + VLTAAHCV +S +I G ++
Sbjct: 2 VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRT 61
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV 131
+ ++SS+ H + N N+D+A+LKL +
Sbjct: 62 ------SGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSI 94
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 78/135 (57%), Gaps = 9/135 (6%)
Query: 316 LAPRRPTESHLHFHFLS-TDIDP-SGKMGTVVGWGRTSEGGSLA-TEALEVQVPILSPGQ 372
L+ P+ ++ + L+ + DP +G TV GWG TSEGGS L+V VPI+S
Sbjct: 90 LSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRAT 149
Query: 373 CRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPG 430
CRA +Y S IT M CAG G DSCQGDSGGP++ + L+G VSWG GC RP
Sbjct: 150 CRA-QYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS---NTLIGAVSWGNGCARPN 205
Query: 431 YPGVYTRVNRYLSWV 445
Y GVY V S++
Sbjct: 206 YSGVYASVGALRSFI 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 203 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP-SGKMGTVVG 261
+ ++SS+ H + NN +D+A+LKL + ++ L DP +G TV G
Sbjct: 65 ITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAG 122
Query: 262 WGRTSEGGSLA-TEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
WG TSEGGS L+V VPI+S CRA +Y S IT M CAG G DSCQ
Sbjct: 123 WGATSEGGSSTPVNLLKVTVPIVSRATCRA-QYGTSAITNQMFCAGVSSGGKDSCQ 177
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG +P++ + +G CG SL+N + VLTAAHCV +S +I G +
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV 131
+ + ++SS+ H + N N+D+A+LKL +
Sbjct: 61 T------SGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSI 94
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 396
GK+ TV GWG T G A E +VPI+S C + ++I P M CAG G +D
Sbjct: 126 GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGID 185
Query: 397 SCQGDSGGPLIIND----VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+CQGDSGGP + D R+ L GIVSWG GC PGVYT+V+ + W+ + +K
Sbjct: 186 ACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 243
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 13/122 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGDY 87
IVGGR T + ++PW L YDG CG SL++ D+VLTAAHC R S+ R+ G
Sbjct: 1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAG-- 58
Query: 88 DQSVTTETAEPTMMRAVSSIVRH------RHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 141
+ + + V ++V H R + ++DIAL+ L P+ T+ ++P+C
Sbjct: 59 ---AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVC 115
Query: 142 LP 143
LP
Sbjct: 116 LP 117
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRH------RHFDVNNYNHDIALLKLRK 232
V S+ R+ G + + + V ++V H R + ++DIAL+ L
Sbjct: 49 VLSRWRVFAG-----AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSS 103
Query: 233 PVSFTKSVRPICLPPDN---IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
P+ T+ ++P+CLP +D GK+ TV GWG T G A E +VPI+S C
Sbjct: 104 PLPLTEYIQPVCLPAAGQALVD--GKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCN 161
Query: 290 AMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ ++I P M CAG G +D+CQ
Sbjct: 162 GADFYGNQIKPKMFCAGYPEGGIDACQ 188
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGXLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPTS-CASAGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGXLEGGKDSCQ 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHC----XKSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG G N P+ L + +H CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL--NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 55 INVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A +E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 138 ITGWGET-QGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 196
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
SGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 197 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 246
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDY 87
+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG +
Sbjct: 18 VVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH 77
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 78 -QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 124
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A +E Q+P+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLMEAQLPV 160
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 161 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 194
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 125 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 182
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 183 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 238
Query: 448 NM 449
+
Sbjct: 239 TI 240
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 64 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 120
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 121 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 177
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 178 SNMFCAGYLEGGKDSCQ 194
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 13 FKFTCLLECGVT---NQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAA 69
F F LL V + + +IVGG G N P+ L G CG SLIN +V++AA
Sbjct: 1 FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAA 59
Query: 70 HCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRK 129
HC +S I++ LG + ++ + A SIV H ++ N N+DI L+KL+
Sbjct: 60 HCY----KSGIQVRLG--EDNINVVEGNEQFISASKSIV-HPSYNSNTLNNDIMLIKLKS 112
Query: 130 PVSFTKSVRPICLP 143
S V I LP
Sbjct: 113 AASLNSRVASISLP 126
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 111 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 168
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 169 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 224
Query: 448 NM 449
+
Sbjct: 225 TI 226
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 50 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 106
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 107 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 163
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 164 SNMFCAGYLEGGKDSCQ 180
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 6 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--E 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 59 DNINVVEGNEQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 112
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 119 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 176
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 177 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 232
Query: 448 NM 449
+
Sbjct: 233 TI 234
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 58 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 114
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 115 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 171
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 172 SNMFCAGYLEGGKDSCQ 188
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 14 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 68
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 69 INVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 120
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 316 LAPRRPTESHLHFHFLS-TDIDP-SGKMGTVVGWGRTSEGGSLA-TEALEVQVPILSPGQ 372
L+ P+ ++ + L+ + DP +G TV GWG TSEGGS L+V VPI+S
Sbjct: 90 LSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRAT 149
Query: 373 CRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPG 430
CRA +Y S IT M CAG G DSCQGD GGP++ + L+G VSWG GC RP
Sbjct: 150 CRA-QYGTSAITNQMFCAGVSSGGKDSCQGDXGGPIVDSS---NTLIGAVSWGNGCARPN 205
Query: 431 YPGVYTRVNRYLSWV 445
Y GVY V S++
Sbjct: 206 YSGVYASVGALRSFI 220
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 203 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP-SGKMGTVVG 261
+ ++SS+ H + NN +D+A+LKL + ++ L DP +G TV G
Sbjct: 65 ITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAG 122
Query: 262 WGRTSEGGSLA-TEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
WG TSEGGS L+V VPI+S CRA +Y S IT M CAG G DSCQ
Sbjct: 123 WGATSEGGSSTPVNLLKVTVPIVSRATCRA-QYGTSAITNQMFCAGVSSGGKDSCQ 177
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG +P++ + +G CG SL+N + VLTAAHCV +S +I G +
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV 131
+ + ++SS+ H + N N+D+A+LKL +
Sbjct: 61 T------SGGITSSLSSVRVHPSYSGN--NNDLAILKLSTSI 94
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLXSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I L P + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISL-PTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLXSRVASISLP 106
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 106 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 163
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 164 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 219
Query: 448 NM 449
+
Sbjct: 220 TI 221
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS- 239
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S S
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLXDSR 100
Query: 240 VRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRI 298
V I LP + +G + GWG T G+ + L+ ++ PILS C++ P +I
Sbjct: 101 VASISLP-TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQI 157
Query: 299 TPNMLCAG--RGEMDSCQ 314
T NM CAG G DSCQ
Sbjct: 158 TSNMFCAGYLEGGKDSCQ 175
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS-VRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLXDSRVASISLP 107
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I L P + +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISL-PTSCASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS C++ P +IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQITSNMFCAGYLEGGKDSCQ 174
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG G N P+ L + +H CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL--NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 55 INVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 110 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 167
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 168 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 223
Query: 448 NM 449
+
Sbjct: 224 TI 225
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 49 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 105
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 106 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 162
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 163 SNMFCAGYLEGGKDSCQ 179
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 5 KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--E 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 58 DNINVVEGNEQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 111
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNKRRKNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I L P + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISL-PTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNKRRKNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H +D N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYDSNTLNNDIMLIKLKSAASLDSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 31 VGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
VGG G N P+ L G CG SLI+ +V++AAHC + S I++ LG+ + +
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLIDSQWVVSAAHCYK----SGIQVRLGEDNIN 56
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V + + A SIV H +D N N+DI L+KL+ S V I LP
Sbjct: 57 VVEGNEQ--FISASKSIV-HPSYDSNTLNNDIMLIKLKSAASLDSRVASISLP 106
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I L P + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISL-PTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 31 VGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
VGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ + +
Sbjct: 2 VGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNIN 56
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 57 VVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM 395
P+G + GWG E S + +L E VP+++ +C + + + I+PNMLCAG +
Sbjct: 123 PAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC 182
Query: 396 --DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+CQGDSGGPL G L GI+SWG GCGR PGVYTRV Y+ W+ ++
Sbjct: 183 KSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSF 236
+ +VLG Q T + T + + + + V N +HD+ L++L+K +
Sbjct: 50 SVSVVLG---QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 237 TKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK 294
++ V+PICLP P + P+G + GWG E S + +L E VP+++ +C + +
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVY 166
Query: 295 PSRITPNMLCAGRGEM--DSCQ 314
+ I+PNMLCAG + D+CQ
Sbjct: 167 GADISPNMLCAGYFDCKSDACQ 188
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRL-KRSKIRIVLGDYD 88
I+GG + +PW+A +Y G+ C SL++ +V++AAHC R + +VLG
Sbjct: 1 IIGGSSSLPGSHPWLAA-IYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLG--- 56
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSFTKSVRPICLP 143
Q T + T + + + + V N +HD+ L++L+K + ++ V+PICLP
Sbjct: 57 QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM 395
P+G + GWG E S + +L E VP+++ +C + + + I+PNMLCAG +
Sbjct: 123 PAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC 182
Query: 396 --DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+CQGDSGGPL G L GI+SWG GCGR PGVYTRV Y+ W+ ++
Sbjct: 183 KSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSF 236
+ +VLG Q T + T + + + + V N +HD+ L++L+K +
Sbjct: 50 SVSVVLG---QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATR 106
Query: 237 TKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK 294
++ V+PICLP P + P+G + GWG E S + +L E VP+++ +C + +
Sbjct: 107 SQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVY 166
Query: 295 PSRITPNMLCAGRGEM--DSCQ 314
+ I+PNMLCAG + D+CQ
Sbjct: 167 GADISPNMLCAGYFDCKSDACQ 188
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRL-KRSKIRIVLGDYD 88
I+GG + +PW+A +Y G+ C SL++ +V++AAHC R + +VLG
Sbjct: 1 IIGGSSSLPGSHPWLAA-IYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLG--- 56
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSFTKSVRPICLP 143
Q T + T + + + + V N +HD+ L++L+K + ++ V+PICLP
Sbjct: 57 QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCAG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASVSLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V + LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLP 106
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM 395
P+G + GWG E S + +L E VP+++ +C + + + I+PNMLCAG +
Sbjct: 158 PAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC 217
Query: 396 --DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+CQGDSGGPL G L GI+SWG GCGR PGVYTRV Y+ W+ ++
Sbjct: 218 KSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSFT 237
+ +VLG Q T + T + + + + V N +HD+ L++L+K + +
Sbjct: 86 VSVVLG---QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRS 142
Query: 238 KSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKP 295
+ V+PICLP P + P+G + GWG E S + +L E VP+++ +C + +
Sbjct: 143 QFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYG 202
Query: 296 SRITPNMLCAGRGEM--DSCQ 314
+ I+PNMLCAG + D+CQ
Sbjct: 203 ADISPNMLCAGYFDCKSDACQ 223
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRL-KRSKIRIVLGDY 87
RI+GG + +PW+A +Y G+ C SL++ +V++AAHC R + +VLG
Sbjct: 35 RIIGGSSSLPGSHPWLA-AIYIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLG-- 91
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP----VSFTKSVRPICL 142
Q T + T + + + + V N +HD+ L++L+K + ++ V+PICL
Sbjct: 92 -QHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICL 150
Query: 143 P 143
P
Sbjct: 151 P 151
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 125 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 182
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGD+GGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 183 AGYLEGGKDSCQGDAGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 238
Query: 448 NM 449
+
Sbjct: 239 TI 240
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 64 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 120
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 121 ASISLPT-SCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 177
Query: 300 PNMLCAG--RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGR 349
NM CAG G DSCQ A + SGK+ +V WG
Sbjct: 178 SNMFCAGYLEGGKDSCQGDA--------------GGPVVCSGKLQGIVSWGS 215
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 13 FKFTCLLECGVT---NQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAA 69
F F LL V + + +IVGG G N P+ L G CG SLIN +V++AA
Sbjct: 1 FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAA 59
Query: 70 HCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRK 129
HC +S I++ LG + ++ + A SIV H ++ N N+DI L+KL+
Sbjct: 60 HCY----KSGIQVRLG--EDNINVVEGNEQFISASKSIV-HPSYNSNTLNNDIMLIKLKS 112
Query: 130 PVSFTKSVRPICLP 143
S V I LP
Sbjct: 113 AASLNSRVASISLP 126
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C P IT M CA
Sbjct: 120 LPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 177
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 178 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 233
Query: 449 M 449
M
Sbjct: 234 M 234
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 59 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 115
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + + +PILS C P IT
Sbjct: 116 QPVAL-PTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITN 172
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 173 AMFCAGYLEGGKDSCQ 188
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 10/130 (7%)
Query: 15 FTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVR 73
F L+ ++ +IVGG Y ++ + +H CG SL+NE++V++AAHC +
Sbjct: 1 FVLLIGAAFATEDDKIVGGYE--CKAYSQAHQVSLNSGYHFCGGSLVNENWVVSAAHCYK 58
Query: 74 RLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSF 133
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP +
Sbjct: 59 ----SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATL 111
Query: 134 TKSVRPICLP 143
V+P+ LP
Sbjct: 112 NTYVQPVALP 121
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + E G + +V +P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQK-RYQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL+ G + LVGI SWG GC R PGVYT+V Y+ W+
Sbjct: 188 SGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 14/162 (8%)
Query: 30 IVGGRPTGVNKYPWVARL---VYDGNFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L + CG SLI +VLTAAHC L + RI G
Sbjct: 1 IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+ S + + T + I+ H+++ V+ NHDIAL+KL+ P+++T+ +PI LP
Sbjct: 61 ILNLS---DITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSK 117
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVL 187
+ T+ V +G ++ +++ + K+ I L
Sbjct: 118 GDTSTIYT-------NCWVTGWGFSKEKGEIQNILQKVNIPL 152
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 196 TETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGK 255
++ + T + I+ H+++ V+ NHDIAL+KL+ P+++T+ +PI LP D S
Sbjct: 65 SDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKG-DTSTI 123
Query: 256 MGT--VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 311
V GWG + E G + +V +P+++ +C+ +Y+ +IT M+CAG G D
Sbjct: 124 YTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK-RYQDYKITQRMVCAGYKEGGKD 182
Query: 312 SCQ 314
+C+
Sbjct: 183 ACK 185
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + E G + +V +P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQK-RYQDYKITQRMVCAGYKEGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL+ G + LVGI SWG GC R PGVYT+V Y+ W+
Sbjct: 188 SGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 14/162 (8%)
Query: 30 IVGGRPTGVNKYPWVARL---VYDGNFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L + CG SLI +VLTAAHC L + RI G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+ S T+ T + I+ H+++ V+ NHDIAL+KL+ P+ +T+ +PI LP
Sbjct: 61 ILELSDITKD---TPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSK 117
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVL 187
+ T+ V +G ++ +++ + K+ I L
Sbjct: 118 GDTSTIYT-------NCWVTGWGFSKEKGEIQNILQKVNIPL 152
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 196 TETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGK 255
++ + T + I+ H+++ V+ NHDIAL+KL+ P+ +T+ +PI LP D S
Sbjct: 65 SDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKG-DTSTI 123
Query: 256 MGT--VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 311
V GWG + E G + +V +P+++ +C+ +Y+ +IT M+CAG G D
Sbjct: 124 YTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK-RYQDYKITQRMVCAGYKEGGKD 182
Query: 312 SCQ 314
+C+
Sbjct: 183 ACK 185
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C P IT M CA
Sbjct: 125 LPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 182
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 183 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 238
Query: 449 M 449
M
Sbjct: 239 M 239
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 64 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 120
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + + +PILS C P IT
Sbjct: 121 QPVAL-PTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITN 177
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 178 AMFCAGYLEGGKDSCQ 193
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 15 FTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR 74
F L+ ++ +IVGG P L G CG SL+NE++V++AAHC +
Sbjct: 6 FVLLIGAAFATEDDKIVGGYECKPYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK- 63
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 134
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP +
Sbjct: 64 ---SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLN 117
Query: 135 KSVRPICLP 143
V+P+ LP
Sbjct: 118 TYVQPVALP 126
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 682 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 740
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
SGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 741 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 790
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 561 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 620
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 621 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 668
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 646 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 704
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 705 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 738
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 138 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 196
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
SGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 197 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 246
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 77 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 124
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 160
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 161 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 194
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 141 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 199
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
SGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 200 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 249
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 20 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 79
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 80 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 127
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 163
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 164 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 197
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DS 397
K G V G+GRT E G L++ ++VP + C+ ITPNM CAG D+
Sbjct: 123 KTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLSS--SFTITPNMFCAGYDTQPEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G GVYT+V+ +L W+ + MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWIDKIMK 233
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGGR + PW A LV + N CG +++NE YVLTAAHC+ + KR +R+ + +
Sbjct: 1 IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCLHQAKRFTVRVGDRNTE 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
Q E M V V+H F Y+ DIA+L+L+ P+ F ++V P CLP
Sbjct: 61 QEEGNE-----MAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKD-- 113
Query: 149 HTVVKGTMRCRQRAAVLAFG 168
+ T+ ++ V FG
Sbjct: 114 --WAEATLMTQKTGIVSGFG 131
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 203 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS----GKMGT 258
M V V+H F Y+ DIA+L+L+ P+ F ++V P CLP + + K G
Sbjct: 67 MAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGI 126
Query: 259 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQ 314
V G+GRT E G L++ ++VP + C+ ITPNM CAG D+CQ
Sbjct: 127 VSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLS--SSFTITPNMFCAGYDTQPEDACQ 182
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 9/137 (6%)
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCR 374
L+ R +H+ L T +G + GWG T+ G+ + L+ + P+LS +C
Sbjct: 90 LSSRAVINAHVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCE 149
Query: 375 AMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYP 432
A P +IT NM C G G DSCQGD+GGP++ N +L G+VSWG GC + P
Sbjct: 150 ASY--PGKITSNMFCVGFLEGGKDSCQGDAGGPVVCNG----QLQGVVSWGDGCAQKNKP 203
Query: 433 GVYTRVNRYLSWVKRNM 449
GVYT+V Y+ W+K +
Sbjct: 204 GVYTKVYNYVKWIKNTI 220
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+RH +D N+DI L+KL V
Sbjct: 44 SRIQVRLGEHNIEVL-EGNEQFINAA--KIIRHPQYDRKTLNNDIMLIKLSSRAVINAHV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T+ G+ + L+ + P+LS +C A P +IT
Sbjct: 101 STISLPTAP-PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM C G G DSCQ
Sbjct: 158 SNMFCVGFLEGGKDSCQ 174
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLINE +V++A HC +S+I++ LG+++
Sbjct: 1 IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+RH +D N+DI L+KL V I LP
Sbjct: 56 EV-LEGNEQFINAA--KIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLP 106
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C P IT M CA
Sbjct: 105 LPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + + +PILS C P IT
Sbjct: 101 QPVAL-PTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGD GGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDXGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I L P + +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISL-PTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGYLEGGKDSCQ 174
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG G N P+ L + +H CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL--NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 55 INVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C P IT M CA
Sbjct: 105 LPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + + +PILS C P IT
Sbjct: 101 QPVAL-PTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 50 DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVR 109
G CG SL+NE++V++AAHC + S++ + LG+++ VT + + + S ++R
Sbjct: 20 SGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSEQ---FISSSRVIR 72
Query: 110 HRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
H ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 73 HPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C P IT M CA
Sbjct: 105 LPTSCAPAGTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCN--DSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + + +PILS C P IT
Sbjct: 101 QPVAL-PTSCAPAGTMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCN--DSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 66/115 (57%), Gaps = 10/115 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG Y ++ + +H CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYE--CKAYSQAHQVSLNSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHN 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 55 IKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 9/130 (6%)
Query: 323 ESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPS 381
+H+ L + P+G + GWG T G + L+ + P+L C A P
Sbjct: 119 NAHVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PG 176
Query: 382 RITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVN 439
+IT NM+C G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V
Sbjct: 177 KITDNMVCVGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVC 232
Query: 440 RYLSWVKRNM 449
Y+ W++ +
Sbjct: 233 NYVDWIQDTI 242
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 66 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHV 122
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 123 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 179
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 180 DNMVCVGFLEGGKDSCQ 196
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 22 KIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHN 76
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 77 INVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALP 128
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 138 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 196
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+GGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 197 AGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 246
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 17 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 76
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 77 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 124
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 102 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 160
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 161 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 194
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 141 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 199
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+GGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 200 AGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 249
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 20 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 79
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 80 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 127
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 163
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 164 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 197
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 140 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 198
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+GGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 199 AGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 248
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 19 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 78
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 79 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 126
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 104 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 162
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 163 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 196
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 139 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 197
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+GGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M++
Sbjct: 198 AGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN 247
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L H CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 18 RVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 77
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ Q V E V I R F + DIALLKL P T V P CLP
Sbjct: 78 H-QEVNLEP-------HVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 125
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP P+ + + GWG T +G A E Q+P+
Sbjct: 103 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPV 161
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 162 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 195
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGD 401
+ GWG T +G A E Q+P++ C ++ R+ LCAG G DSCQGD
Sbjct: 137 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 195
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
SGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ +++
Sbjct: 196 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVLRN 245
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Query: 29 RIVGGRPTGVNKYPWVARL-VYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
R+VGG + +PW L G CG +LI+ ++VLTAAHC+ + R S +++LG
Sbjct: 16 RVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGA 75
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ E + V I R F + DIALLKL P T V P CLP
Sbjct: 76 HQ--------EVNLEPHVQEIEVSRLF-LEPTRKDIALLKLSSPAVITDKVIPACLP 123
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 224 DIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT-VVGWGRTSEGGSLATEALEVQVPI 282
DIALLKL P T V P CLP N + + + GWG T +G A E Q+P+
Sbjct: 101 DIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGET-QGTFGAGLLKEAQLPV 159
Query: 283 LSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQ 314
+ C ++ R+ LCAG G DSCQ
Sbjct: 160 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 193
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L + P+G M TV GWG T + + + +PILS C P IT M CA
Sbjct: 105 LPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + +W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 TRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + +PILS C P IT
Sbjct: 101 QPVAL-PSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + +++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----TRVEVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ P G++ ++ GWG GS A E VP+LS +C+ + IT NM+CAG
Sbjct: 116 ENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQ-QQMPEYNITENMVCAG 174
Query: 392 --RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
G +DSCQGDSGGPL+ + R+ L G+ S+G C P PGVY RV R+ W++
Sbjct: 175 YEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQ 231
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV--RRLKRSKIRIVLGDY 87
IVGG + +PWV L +D CGASL++ D++++AAHCV R ++ SK + VLG +
Sbjct: 1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLH 60
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S T T R + IV + H++ N+DIA++ L V++T ++PICLP +++
Sbjct: 61 MASNLTSPQIET--RLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQ 118
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
SK + VLG + S T T R + IV + H++ N+DIA++ L V++T +
Sbjct: 51 SKWKAVLGLHMASNLTSPQIET--RLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYI 108
Query: 241 RPICLPPDN-IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+PICLP +N + P G++ ++ GWG GS A E VP+LS +C+ + IT
Sbjct: 109 QPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQ-QQMPEYNIT 167
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+CAG G +DSCQ
Sbjct: 168 ENMVCAGYEAGGVDSCQ 184
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 15/136 (11%)
Query: 325 HLHFHFLSTD------------IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQ 372
HL F TD + P G+ ++ GWG G+ A E VP+LS +
Sbjct: 97 HLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNER 156
Query: 373 CRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPG 430
C+ + IT NM+CAG G +DSCQGDSGGPL+ + R+ L G+ S+G C P
Sbjct: 157 CQ-QQMPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPN 215
Query: 431 YPGVYTRVNRYLSWVK 446
PGVY RV+R+ W++
Sbjct: 216 RPGVYARVSRFTEWIQ 231
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV--RRLKRSKIRIVLGDY 87
IVGG +PWV L YD CGASL++ D++++AAHCV R L+ SK +LG +
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
+S T+ T+ R + IV + H++ ++DIA++ L V++T ++PI LP +++
Sbjct: 61 MKS--NLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQ 118
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 177 KLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSF 236
L SK +LG + +S T+ T+ R + IV + H++ ++DIA++ L V++
Sbjct: 47 NLEPSKWTAILGLHMKS--NLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNY 104
Query: 237 TKSVRPICLPPDN-IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
T ++PI LP +N + P G+ ++ GWG G+ A E VP+LS +C+ +
Sbjct: 105 TDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQ-QQMPE 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM+CAG G +DSCQ
Sbjct: 164 YNITENMICAGYEEGGIDSCQ 184
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 138 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 195
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 196 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 248
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 25 NQEVRIVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIV 83
N RIVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+
Sbjct: 11 NNLTRIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV- 69
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
GD + T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 70 -GDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 125
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 62 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 118
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 119 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 176
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 177 FIITQNMFCAGYDTKQEDACQ 197
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ E E + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 -TAAEEGGEA--VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + + E E + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN-TAAEEGGEA--VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 9/137 (6%)
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCR 374
L+ R + + L T +G + GWG T+ G+ + L+ + P+LS +C
Sbjct: 90 LSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCE 149
Query: 375 AMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYP 432
A P +IT NM C G G DSCQGDSGGP++ N +L G+VSWG GC + P
Sbjct: 150 ASY--PGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQKNKP 203
Query: 433 GVYTRVNRYLSWVKRNM 449
GVYT+V Y+ W+K +
Sbjct: 204 GVYTKVYNYVKWIKNTI 220
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+RH +D N+DI L+KL V
Sbjct: 44 SRIQVRLGEHNIEVL-EGNEQFINAA--KIIRHPQYDRKTLNNDIMLIKLSSRAVINARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T+ G+ + L+ + P+LS +C A P +IT
Sbjct: 101 STISLPTAP-PATGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM C G G DSCQ
Sbjct: 158 SNMFCVGFLEGGKDSCQ 174
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLINE +V++A HC +S+I++ LG+++
Sbjct: 1 IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+RH +D N+DI L+KL V I LP
Sbjct: 56 EV-LEGNEQFINAA--KIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLP 106
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 115 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 172
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 173 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228
Query: 448 NM 449
+
Sbjct: 229 TI 230
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 54 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 110
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 111 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 167
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 168 DNMVCVGFLEGGKDSCQ 184
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 11 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 65
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 66 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 116
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 113 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 170
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 171 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Query: 448 NM 449
+
Sbjct: 227 TI 228
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 52 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 108
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 109 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 165
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 166 DNMVCVGFLEGGKDSCQ 182
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 32 GGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
GG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++ +V
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + I++H +FD N+DI L+KL PV V + LP
Sbjct: 66 LEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L + P+G M TV GWG T + + + +PILS C P IT M CA
Sbjct: 105 LPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL K + V
Sbjct: 44 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + +PILS C P IT
Sbjct: 101 QPVAL-PSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL K + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALP 106
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 399
TV GWG EGGS L+ VP +S CR+ Y + +CAG G +D+CQ
Sbjct: 111 TVAGWGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDTCQ 169
Query: 400 GDSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
GDSGGP+ D + VGIVSWG GC RPGYPGVYT V+ + S
Sbjct: 170 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFAS 214
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 208 SSIVRHRHFDV------NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVG 261
SS V+ R V N D AL+KL +P++ +P + TV G
Sbjct: 60 SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAG 114
Query: 262 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 314
WG EGGS L+ VP +S CR+ Y + +CAG G +D+CQ
Sbjct: 115 WGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDTCQ 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++P++ RL + CG +L +D VLTAAHCV G +
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS-----------GSGNN 45
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDV------NNYNHDIALLKLRKPVS 132
+ T T +++ SS V+ R V N D AL+KL +P++
Sbjct: 46 TSITATGGVVDLQS-SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN 93
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
AG DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+ +
Sbjct: 163 AGLEGGDSCQGDSGGPVVCSG----KLQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTI 217
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAGRGEMDSCQ 314
NM CAG DSCQ
Sbjct: 158 SNMFCAGLEGGDSCQ 172
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L + P+G M TV GWG T + + + +PILS C P IT M CA
Sbjct: 105 LPSSCAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 SRVAVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + +PILS C P IT
Sbjct: 101 QPVAL-PSSCAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVAVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L + P+G M TV GWG T + + + +PILS C P IT M CA
Sbjct: 105 LPSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 M 449
M
Sbjct: 219 M 219
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP + V
Sbjct: 44 SRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+P+ L P + P+G M TV GWG T + + + +PILS C P IT
Sbjct: 101 QPVAL-PSSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCN--NSYPGMITN 157
Query: 301 NMLCAG--RGEMDSCQ 314
M CAG G DSCQ
Sbjct: 158 AMFCAGYLEGGKDSCQ 173
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 399
TV GWG EGGS L+ VP +S CR+ Y + +CAG G +D+CQ
Sbjct: 111 TVAGWGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDTCQ 169
Query: 400 GDSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
GDSGGP+ D + VGIVSWG GC RPGYPGVYT V+ + S
Sbjct: 170 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFAS 214
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEV 278
N D AL+KL +P++ +P + TV GWG EGGS L+
Sbjct: 77 NGTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKA 131
Query: 279 QVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 314
VP +S CR+ Y + +CAG G +D+CQ
Sbjct: 132 NVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDTCQ 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++P++ RL + CG +L +D VLTAAHCV + G
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGV-- 54
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
V ++ +R+ + + N D AL+KL +P++
Sbjct: 55 -VDLQSGAAVKVRSTKVLQAPGY---NGTGKDWALIKLAQPIN 93
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 399
TV GWG EGGS L+ VP +S CR+ + M+CAG G +D+CQ
Sbjct: 118 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYPDTGGVDTCQ 176
Query: 400 GDSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
GDSGGP+ D + VGIVSWG GC RPGYPGVYT V+ + S
Sbjct: 177 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFAS 221
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN-FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+VGG ++P++ RL+ + N CG +L +D VLTAAHCV + G
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGV- 59
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
V +++ +R+ + +++ F Y D AL+KL +P++
Sbjct: 60 --VDLQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 208 SSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSE 267
+ +++ F Y D AL+KL +P++ +P + TV GWG E
Sbjct: 73 TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 127
Query: 268 GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 314
GGS L+ VP +S CR+ + M+CAG G +D+CQ
Sbjct: 128 GGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYPDTGGVDTCQ 176
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD YN+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD YN+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQ 217
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N++I L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N++I L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALP 106
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 113 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEASY--PGKITDNMVC 170
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 171 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Query: 448 NM 449
+
Sbjct: 227 TI 228
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 52 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 108
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 109 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEAS--YPGKIT 165
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 166 DNMVCVGFLEGGKDSCQ 182
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 32 GGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
GG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++ +V
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + I++H +FD N+DI L+KL PV V + LP
Sbjct: 66 LEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATIAL-PSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V I LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALP 106
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T+ G+ + L+ + P+LS +C A P +IT NM C
Sbjct: 109 LPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY--PGKITSNMFC 166
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N +L G+VSWG GC + PGVYT+V Y+ W+K
Sbjct: 167 VGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 222
Query: 448 NM 449
+
Sbjct: 223 TI 224
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN-FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P LP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRI 298
V P LP +G + GWG T+ G+ + L+ + P+LS +C A P +I
Sbjct: 104 VAPASLPTAP-PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS--YPGKI 160
Query: 299 TPNMLCAG--RGEMDSCQ 314
T NM C G G DSCQ
Sbjct: 161 TSNMFCVGFLEGGKDSCQ 178
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V E E + A I++H +FD N++I L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVL-EGDEQFVNAA--KIIKHPNFDRKTLNNNIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V E E + A I++H +FD N++I L+KL PV V + LP
Sbjct: 56 NVL-EGDEQFVNAA--KIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALP 106
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 143 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 202
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 203 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 262
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 20/196 (10%)
Query: 19 LECG--VTNQEVRIVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC 71
+CG +I+GG T + PW A + + G + CG SLI+ +V++A HC
Sbjct: 3 FQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHC 62
Query: 72 -VRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR 128
+ K+ + LG +S + M V +++ H+ + + H DIALLK+R
Sbjct: 63 FIDYPKKEDYIVYLG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIR 119
Query: 129 ----KPVSFTKSVRPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSS 181
+ +++++ I LP D ++ T + T ++ + + Q + VKL+S
Sbjct: 120 SKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISH 179
Query: 182 KIRIVLGDYDQSVTTE 197
+ Y VTT+
Sbjct: 180 RECQQPHYYGSEVTTK 195
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 89 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGT 148
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 149 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 208
Query: 313 CQ 314
CQ
Sbjct: 209 CQ 210
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G +G DSCQG
Sbjct: 118 ISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSY--PGQITGNMICVGFLQGGKDSCQG 175
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 176 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSS--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G +G DSCQ
Sbjct: 158 GNMICVGFLQGGKDSCQ 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 56 DV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 106
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--EMDS 397
K G V G+GRT E G +T ++VP + C+ IT NM CAG + D+
Sbjct: 123 KTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCAGYDTKQEDA 180
Query: 398 CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
CQGD+GGP + Y + GIVSWG GC R G G+YT+V +L W+ R+MK
Sbjct: 181 CQGDAGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK 233
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF-HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + N CG ++++E Y+LTAAHC+ + KR K+R+ GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV--GDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
T + + V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 ---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + T + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRN---TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP + S K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAGRG--EMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSCQG
Sbjct: 126 ISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQG 183
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 184 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 24 TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIV 83
T+ + +IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++
Sbjct: 3 TDDDDKIVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVR 57
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 58 LGEHNIDV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 114
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 52 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 108
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 109 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQIT 165
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 166 GNMICVGFLEGGKDSCQ 182
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSCQG
Sbjct: 118 ISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAY--PGQITGNMICVGFLEGGKDSCQG 175
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 176 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 GNMICVGFLEGGKDSCQ 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCAANSVPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 56 DV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 106
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 115 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 172
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGD+GGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 173 VGFLEGGKDSCQGDAGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228
Query: 448 NM 449
+
Sbjct: 229 TI 230
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 54 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 110
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 111 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 167
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 168 DNMVCVGFLEGGKDSCQ 184
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 10 KIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHN 64
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 65 INVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 116
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 151 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 210
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 211 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 270
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 20/202 (9%)
Query: 11 DQFKFTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYV 65
++ KF C + +I+GG T + PW A + + G + CG SL++ +V
Sbjct: 7 EELKFQCGQK--TLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWV 64
Query: 66 LTAAHC-VRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DI 122
++A HC + K+ + LG +S + M V +++ H+ + + H DI
Sbjct: 65 ISATHCFIDYPKKEDYIVYLG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDI 121
Query: 123 ALLKLR----KPVSFTKSVRPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSD 175
ALLK+R + +++++ ICLP D ++ T + T ++ + + Q +
Sbjct: 122 ALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTV 181
Query: 176 VKLVSSKIRIVLGDYDQSVTTE 197
VKL+S + Y VTT+
Sbjct: 182 VKLISHRECQQPHYYGSEVTTK 203
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 97 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 156
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 157 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 216
Query: 313 CQ 314
CQ
Sbjct: 217 CQ 218
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
A G+ DSCQGDSGGP++ + +L GIVSWG GC PGVYT+V Y+SW+K+
Sbjct: 163 AYGLEGKGDSCQGDSGGPVVCSG----KLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I++ LG+ + +V + + A SIV H ++ N N+DI L+KL+ S V
Sbjct: 44 SGIQVRLGEDNINVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T G+ + L+ ++ PILS C++ P +IT
Sbjct: 101 ASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CA G+ DSCQ
Sbjct: 158 SNMFCAYGLEGKGDSCQ 174
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSCQG
Sbjct: 118 ISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQG 175
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 176 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 GNMICVGFLEGGKDSCQ 174
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 56 DV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 106
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSCQG
Sbjct: 118 ISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQG 175
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 176 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 GNMICVGFLEGGKDSCQ 174
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 31 VGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
VGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 2 VGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNID 56
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 57 V-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 106
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 399
TV GWG EGGS L+ VP +S CR+ Y + +CAG G +D CQ
Sbjct: 111 TVAGWGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDPCQ 169
Query: 400 GDSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
GDSGGP+ D + VGIVSWG GC RPGYPGVYT V+ + S
Sbjct: 170 GDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFAS 214
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 208 SSIVRHRHFDV------NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVG 261
SS V+ R V N D AL+KL +P++ +P + TV G
Sbjct: 60 SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAG 114
Query: 262 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEMDSCQ 314
WG EGGS L+ VP +S CR+ Y + +CAG G +D CQ
Sbjct: 115 WGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYPDTGGVDPCQ 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++P++ RL + CG +L +D VLTAAHCV G +
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS-----------GSGNN 45
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDV------NNYNHDIALLKLRKPVS 132
+ T T +++ SS V+ R V N D AL+KL +P++
Sbjct: 46 TSITATGGVVDLQS-SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN 93
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++++ + Q + VKL+S + Y V
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSCQG
Sbjct: 118 ISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQG 175
Query: 401 DSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSGGP++ N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 176 DSGGPVVCNG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLXSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + +G + GWG T GS L+ ++ P+LS C++ P +IT
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSS--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 GNMICVGFLEGGKDSCQ 174
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 56 DV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLP 106
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGD+GGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDAGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 346 GWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGE--------MD 396
G+G+ +E L E V + +C + +T NMLCAG D
Sbjct: 138 GYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHD 197
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+CQGDSGGPL+ + GR LVGI+SWG+GCG+ PGVYT+V YL W++ NM+
Sbjct: 198 ACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR 251
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN------FHCGASLINEDYVLTAAHCVR-RLKRSKIRI 82
I GG + +PW A + F CG LI+ ++L+AAHC + R + +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS----FTKSVR 138
+LG + V E + V + H+ FD + Y++DIALL+L+ S + VR
Sbjct: 61 ILGRTYRVVPGEEEQKF---EVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 139 PICLPP 144
+CLPP
Sbjct: 118 TVCLPP 123
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVS----FTKSVRPICLPPDNID-PSGKMGTVVG 261
V + H+ FD + Y++DIALL+L+ S + VR +CLPP ++ P + G
Sbjct: 79 VEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSG 138
Query: 262 WGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG 306
+G+ +E L E V + +C + +T NMLCAG
Sbjct: 139 YGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAG 184
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 113 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 170
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQG+SGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 171 VGFLEGGKDSCQGNSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226
Query: 448 NM 449
+
Sbjct: 227 TI 228
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 52 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 108
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 109 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 165
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 166 DNMVCVGFLEGGKDSCQ 182
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 32 GGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
GG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++ +V
Sbjct: 11 GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNINV 65
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + I++H +FD N+DI L+KL PV V + LP
Sbjct: 66 LEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 114
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 346 GWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGE--------MD 396
G+G+ +E L E V + +C + +T NMLCAG D
Sbjct: 151 GYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHD 210
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+CQGDSGGPL+ + GR LVGI+SWG+GCG+ PGVYT+V YL W++ NM+
Sbjct: 211 ACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR 264
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 21 CGV---TNQEVRIVGGRPTGVNKYPWVARLVYDGN------FHCGASLINEDYVLTAAHC 71
CG+ + + RI GG + +PW A + F CG LI+ ++L+AAHC
Sbjct: 2 CGLRQYSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHC 61
Query: 72 VR-RLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKP 130
+ R + ++LG + V E + V + H+ FD + Y++DIALL+L+
Sbjct: 62 FQERFPPHHLTVILGRTYRVVPGEEEQKF---EVEKYIVHKEFDDDTYDNDIALLQLKSD 118
Query: 131 VS----FTKSVRPICLPP 144
S + VR +CLPP
Sbjct: 119 SSRCAQESSVVRTVCLPP 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVS----FTKSVRPICLPPDNID-PSGKMGTVVG 261
V + H+ FD + Y++DIALL+L+ S + VR +CLPP ++ P + G
Sbjct: 92 VEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSG 151
Query: 262 WGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG 306
+G+ +E L E V + +C + +T NMLCAG
Sbjct: 152 YGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAG 197
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 4/119 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 246
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIV WG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVEWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + D+CQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDACQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + D+
Sbjct: 134 SCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDA 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N EL GIV WG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDSGGPVVCNG----ELQGIVKWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTK 246
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++++ + Q + VKL+S + Y V
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + SG V GWG S S + L + +PILS C + P +IT NM C
Sbjct: 105 LPSSCASSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAY--PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ N +L G+VSWG GC + PGVYT+V Y SW+
Sbjct: 163 AGFMEGGKDSCQGDSGGPVVCNG----QLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISS 218
Query: 448 NMKD 451
M
Sbjct: 219 TMSS 222
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V T + + +V ++ H ++ N ++DI L+KL KP S V
Sbjct: 44 SRIQVRLGEHNIAVNEGTEQ--FIDSVK-VIMHPSYNSRNLDNDIMLIKLSKPASLNSYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + SG V GWG S S + L + +PILS C + P +IT
Sbjct: 101 STVAL-PSSCASSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSA--YPGQIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM CAG G DSCQ
Sbjct: 158 SNMFCAGFMEGGKDSCQ 174
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N + A L G CG SLI+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYECRKNSASYQASL-QSGYHFCGGSLISSTWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V T + + +V ++ H ++ N ++DI L+KL KP S V + LP
Sbjct: 56 AVNEGTEQ--FIDSVK-VIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALP 106
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGD GGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDSCQGDCGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G DSCQ
Sbjct: 158 DNMVCVGFLEGGKDSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ + DSCQGD+GGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 188 QWKTDSCQGDAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SLI+ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++++ + Q + VKL+S + Y V
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 318 PRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 377
PR+ ES F+ TD +GT GWG T G LA + V +PI+ +C A
Sbjct: 110 PRKEAES-----FMRTD-----DIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAAY 158
Query: 378 YKP----SRITPNMLCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGR 428
KP +T NMLCAG G DSC+GDSGG L+ D R+ + GIVSWG + CG
Sbjct: 159 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 218
Query: 429 PGYPGVYTRVNRYLSWVKRNMKD 451
G GVYT+V Y+ W++ + D
Sbjct: 219 AGQYGVYTKVINYIPWIENIISD 241
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP---PDNIDPSGKMGTVVGWGRTSEGGSLATEALE 277
+++DIAL+KL V ++ PICLP ++ + +GT GWG T G LA +
Sbjct: 85 FDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMY 143
Query: 278 VQVPILSPGQCRAMKYKP----SRITPNMLCAG--RGEMDSCQDLAPRRPTESHLHFHFL 331
V +PI+ +C A KP +T NMLCAG G DSC+ +S FL
Sbjct: 144 VDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG-------DSGGALVFL 196
Query: 332 STDIDPSGKMGTVVGWGRTSEG 353
++ + +G +V WG + G
Sbjct: 197 DSETE-RWFVGGIVSWGSMNCG 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGDY 87
I GG+ +PW L+ G GA L+ +++VLTAAH V K S + I +G
Sbjct: 1 IYGGQKAKPGDFPWQV-LILGGTTAAGA-LLYDNWVLTAAHAVYEQKHDASALDIRMG-- 56
Query: 88 DQSVTTETAEPTMMRAVS-SIVRHRHFDVN-NYNHDIALLKLRKPVSFTKSVRPICLP 143
T + P +A S ++ H + + +++DIAL+KL V ++ PICLP
Sbjct: 57 ----TLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G SCQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKSSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G SCQ
Sbjct: 158 DNMVCVGFLEGGKSSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G A ++VP++ C R+ K+ IT NM CAG G DSC
Sbjct: 125 GYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFT---ITNNMFCAGFHEGGRDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
ET R V I+ H +F+ +N YNHDIALL+L +P+ V PIC+ D E
Sbjct: 58 --IEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICI-ADKE 114
Query: 148 YHTV 151
Y +
Sbjct: 115 YTNI 118
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKS 239
KI +V G+++ ET R V I+ H +F+ +N YNHDIALL+L +P+
Sbjct: 48 KITVVAGEHN---IEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSY 104
Query: 240 VRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKP 295
V PIC+ NI G V GWGR G A ++VP++ C R+ K+
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFT- 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG G DSCQ
Sbjct: 164 --ITNNMFCAGFHEGGRDSCQ 182
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ +
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
++ + P+GK V GWG T GG+ A + ++ +++ C + P +ITP M+C G
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLL--PQQITPRMMCVG 178
Query: 392 --RGEMDSCQGDSGGPLI-INDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G +DSCQGDSGGPL + GR G+VSWG GC + PGVYTR+ + W+K N
Sbjct: 179 FLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 186 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 245
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPICL
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 246 P-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 304
P ++ P+GK V GWG T GG+ A + ++ +++ C + P +ITP M+C
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL--LPQQITPRMMC 176
Query: 305 AG--RGEMDSCQ 314
G G +DSCQ
Sbjct: 177 VGFLSGGVDSCQ 188
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHC------VRRLKRSKIRI 82
+VGG ++PW L G H CGASLI+ +++++AAHC R ++
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPICL
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 143 PPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSK--IRIVLGDYDQSVTTETAE 200
P S K V +G + G L+ K IR++ +++ +
Sbjct: 119 PDASHVFPAGKAIW-------VTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQIT 171
Query: 201 PTMM 204
P MM
Sbjct: 172 PRMM 175
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
++ + P+GK V GWG T GG+ A + ++ +++ C + P +ITP M+C G
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLL--PQQITPRMMCVG 178
Query: 392 --RGEMDSCQGDSGGPLI-INDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G +DSCQGDSGGPL + GR G+VSWG GC + PGVYTR+ + W+K N
Sbjct: 179 FLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 186 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 245
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPI L
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 246 P-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 304
P ++ P+GK V GWG T GG+ A + ++ +++ C + P +ITP M+C
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL--LPQQITPRMMC 176
Query: 305 AG--RGEMDSCQ 314
G G +DSCQ
Sbjct: 177 VGFLSGGVDSCQ 188
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHC------VRRLKRSKIRI 82
+VGG ++PW L G H CGASLI+ +++++AAHC R ++
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPI L
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 143 PPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSK--IRIVLGDYDQSVTTETAE 200
P S K V +G + G L+ K IR++ +++ +
Sbjct: 119 PDASHVFPAGKAIW-------VTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQIT 171
Query: 201 PTMM 204
P MM
Sbjct: 172 PRMM 175
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ +
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G A ++VP++ C R+ K+ IT NM CAG G DSC
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT---ITNNMFCAGFHEGGRDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
ET R V I+ H +F+ +N YNHDIALL+L +P+ V PIC+ D E
Sbjct: 58 --IEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICI-ADKE 114
Query: 148 YHTV 151
Y +
Sbjct: 115 YTNI 118
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKS 239
KI +V G+++ ET R V I+ H +F+ +N YNHDIALL+L +P+
Sbjct: 48 KITVVAGEHN---IEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSY 104
Query: 240 VRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKP 295
V PIC+ NI G V GWGR G A ++VP++ C R+ K+
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT- 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG G DSCQ
Sbjct: 164 --ITNNMFCAGFHEGGRDSCQ 182
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ + L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ +
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ I LP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ + L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ I LP D ++ T + T ++ + + Q + VKL+S + Y V
Sbjct: 118 QTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
++ + P+GK V GWG T GG+ A + ++ ++ C + P +ITP M+C G
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLL--PQQITPRMMCVG 178
Query: 392 --RGEMDSCQGDSGGPLI-INDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G +DSCQGDSGGPL + GR G+VSWG GC + PGVYTR+ + W+K N
Sbjct: 179 FLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 186 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 245
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPICL
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 246 P-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 304
P ++ P+GK V GWG T GG+ A + ++ ++ C + P +ITP M+C
Sbjct: 119 PDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENL--LPQQITPRMMC 176
Query: 305 AG--RGEMDSCQ 314
G G +DSCQ
Sbjct: 177 VGFLSGGVDSCQ 188
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHC------VRRLKRSKIRI 82
+VGG ++PW L G H CGASLI+ +++++AAHC R ++
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
LG +DQS +A R + I+ H F+ +++DIALL+L KP ++ VRPICL
Sbjct: 61 FLGLHDQS--QRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICL 118
Query: 143 PPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSK--IRIVLGDYDQSVTTETAE 200
P S K V +G + G L+ K IR++ +++ +
Sbjct: 119 PDASHVFPAGKAIW-------VTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQIT 171
Query: 201 PTMM 204
P MM
Sbjct: 172 PRMM 175
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G A ++VP++ C R+ K+ IT NM CAG G DSC
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT---ITNNMFCAGFHEGGRDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
ET R V I+ H +++ +N YNHDIALL+L +P+ V PIC+ D E
Sbjct: 58 --IEETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICI-ADKE 114
Query: 148 YHTV 151
Y +
Sbjct: 115 YTNI 118
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKS 239
KI +V G+++ ET R V I+ H +++ +N YNHDIALL+L +P+
Sbjct: 48 KITVVAGEHN---IEETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSY 104
Query: 240 VRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKP 295
V PIC+ NI G V GWGR G A ++VP++ C R+ K+
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT- 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG G DSCQ
Sbjct: 164 --ITNNMFCAGFHEGGRDSCQ 182
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 336 DPS-GKMGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG-- 391
DP G + G+G+ L E L++ V ++S +C+ Y S +T MLCA
Sbjct: 128 DPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADP 187
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ + DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ +
Sbjct: 188 QWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSH 244
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV--YDG---NFHCGASLINEDYVLTAAHC-VRRLKRSKIRIV 83
I+GG T + PW A + + G + CG SL++ +V++A HC + K+ +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSV 137
LG +S + M V +++ H+ + + H DIALLK+R + ++++
Sbjct: 61 LG---RSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPP---DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSV 194
+ ICLP D ++ T + T ++++ + Q + VKL+S + Y V
Sbjct: 118 QTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 177
Query: 195 TTE 197
TT+
Sbjct: 178 TTK 180
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 203 MMRAVSSIVRHRHFDVNNYNH--DIALLKLR----KPVSFTKSVRPICLPPDNIDPS-GK 255
M V +++ H+ + + H DIALLK+R + +++++ ICLP DP G
Sbjct: 74 MKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGT 133
Query: 256 MGTVVGWGRTSEGGSLATEALEVQV-PILSPGQCRAMKYKPSRITPNMLCAG--RGEMDS 312
+ G+G+ L E L++ V ++S +C+ Y S +T MLCA + + DS
Sbjct: 134 SCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDS 193
Query: 313 CQ 314
CQ
Sbjct: 194 CQ 195
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 318 PRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 377
PR+ ES F+ TD +GT GWG T G LA + V +PI+ +C A
Sbjct: 110 PRKEAES-----FMRTD-----DIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAAY 158
Query: 378 YKP----SRITPNMLCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGR 428
KP +T NMLCAG G DSC+GD+GG L+ D R+ + GIVSWG + CG
Sbjct: 159 EKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGE 218
Query: 429 PGYPGVYTRVNRYLSWVKRNMKD 451
G GVYT+V Y+ W++ + D
Sbjct: 219 AGQYGVYTKVINYIPWIENIISD 241
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP---PDNIDPSGKMGTVVGWGRTSEGGSLATEALE 277
+++DIAL+KL V ++ PICLP ++ + +GT GWG T G LA +
Sbjct: 85 FDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMY 143
Query: 278 VQVPILSPGQCRAMKYKP----SRITPNMLCAG--RGEMDSCQ 314
V +PI+ +C A KP +T NMLCAG G DSC+
Sbjct: 144 VDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCR 186
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGDY 87
I GG+ +PW L+ G GA L+ +++VLTAAH V K S + I +G
Sbjct: 1 IYGGQKAKPGDFPWQV-LILGGTTAAGA-LLYDNWVLTAAHAVYEQKHDASALDIRMG-- 56
Query: 88 DQSVTTETAEPTMMRAVS-SIVRHRHFDVN-NYNHDIALLKLRKPVSFTKSVRPICLP 143
T + P +A S ++ H + + +++DIAL+KL V ++ PICLP
Sbjct: 57 ----TLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 318 PRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 377
PR+ ES F+ TD +GT GWG T G LA + V +PI+ +C A
Sbjct: 196 PRKEAES-----FMRTD-----DIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAAY 244
Query: 378 YKP----SRITPNMLCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGR 428
KP +T NMLCAG G DSC+GDSGG L+ D R+ + GIVSWG + CG
Sbjct: 245 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 304
Query: 429 PGYPGVYTRVNRYLSWVKRNMKD 451
G GVYT+V Y+ W++ + D
Sbjct: 305 AGQYGVYTKVINYIPWIENIISD 327
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP---PDNIDPSGKMGTVVGWGRTSEGGSLATEALE 277
+++DIAL+KL V ++ PICLP ++ + +GT GWG T G LA +
Sbjct: 171 FDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMY 229
Query: 278 VQVPILSPGQCRAMKYKP----SRITPNMLCAG--RGEMDSCQDLAPRRPTESHLHFHFL 331
V +PI+ +C A KP +T NMLCAG G DSC+ +S FL
Sbjct: 230 VDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG-------DSGGALVFL 282
Query: 332 STDIDPSGKMGTVVGWGRTSEG 353
++ + +G +V WG + G
Sbjct: 283 DSETE-RWFVGGIVSWGSMNCG 303
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 17 CLLECGVTNQEV--RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR 74
C CG++ + RI GG+ +PW L+ G GA L+ +++VLTAAH V
Sbjct: 72 CEPVCGLSARTTGGRIYGGQKAKPGDFPWQV-LILGGTTAAGA-LLYDNWVLTAAHAVYE 129
Query: 75 LKR--SKIRIVLGDYDQSVTTETAEPTMMRAVS-SIVRHRHFDVN-NYNHDIALLKLRKP 130
K S + I +G T + P +A S ++ H + + +++DIAL+KL
Sbjct: 130 QKHDASALDIRMG------TLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 183
Query: 131 VSFTKSVRPICLP 143
V ++ PICLP
Sbjct: 184 VVINSNITPICLP 196
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 77/143 (53%), Gaps = 20/143 (13%)
Query: 318 PRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 377
PR+ ES F+ TD +GT GWG T G LA + V +PI+ +C A
Sbjct: 271 PRKEAES-----FMRTD-----DIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAAY 319
Query: 378 YKP----SRITPNMLCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGR 428
KP +T NMLCAG G DSC+GDSGG L+ D R+ + GIVSWG + CG
Sbjct: 320 EKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGE 379
Query: 429 PGYPGVYTRVNRYLSWVKRNMKD 451
G GVYT+V Y+ W++ + D
Sbjct: 380 AGQYGVYTKVINYIPWIENIISD 402
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP---PDNIDPSGKMGTVVGWGRTSEGGSLATEALE 277
+++DIAL+KL V ++ PICLP ++ + +GT GWG T G LA +
Sbjct: 246 FDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMY 304
Query: 278 VQVPILSPGQCRAMKYKP----SRITPNMLCAG--RGEMDSCQDLAPRRPTESHLHFHFL 331
V +PI+ +C A KP +T NMLCAG G DSC+ +S FL
Sbjct: 305 VDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRG-------DSGGALVFL 357
Query: 332 STDIDPSGKMGTVVGWGRTSEG 353
++ + +G +V WG + G
Sbjct: 358 DSETE-RWFVGGIVSWGSMNCG 378
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Query: 17 CLLECGVTNQEV--RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR 74
C CG++ + +I GG+ +PW L+ G GA L+ +++VLTAAH V
Sbjct: 147 CEPVCGLSARTTGGQIYGGQKAKPGDFPWQV-LILGGTTAAGA-LLYDNWVLTAAHAVYE 204
Query: 75 LKR--SKIRIVLGDYDQSVTTETAEPTMMRAVS-SIVRHRHFDVN-NYNHDIALLKLRKP 130
K S + I +G T + P +A S ++ H + + +++DIAL+KL
Sbjct: 205 QKHDASALDIRMG------TLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258
Query: 131 VSFTKSVRPICLP 143
V ++ PICLP
Sbjct: 259 VVINSNITPICLP 271
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G AT ++VP++ C R+ K+ I NM CAG G DSC
Sbjct: 125 GYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFT---IYSNMFCAGFHEGGKDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDSGGPHVTEVEGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG ++PW L + CG S+INE +V+TAAHC+ KI +V G+Y+
Sbjct: 1 IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIE--PGVKITVVAGEYN- 57
Query: 90 SVTTETAEPTMMR--AVSSIVRHRH-FDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
TE EPT R + +I H + VN Y+HDIALL+L +P++ V PIC+ D
Sbjct: 58 ---TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICI-ADK 113
Query: 147 EYHTV 151
EY +
Sbjct: 114 EYTNI 118
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMR--AVSSIVRHRH-FDVNNYNHDIALLKLRKPVSFTK 238
KI +V G+Y+ TE EPT R + +I H + VN Y+HDIALL+L +P++
Sbjct: 48 KITVVAGEYN----TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNS 103
Query: 239 SVRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYK 294
V PIC+ NI G V GWGR G AT ++VP++ C R+ K+
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFT 163
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
I NM CAG G DSCQ
Sbjct: 164 ---IYSNMFCAGFHEGGKDSCQ 182
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK---PSRITPNMLCAGR--GE 394
+ V GWG+ + G+ A E + + VP L C K IT M CAG G
Sbjct: 125 RFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGS 184
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
DSC+GDSGGP + G + L GIVSWG GC G+ GVYTRV++Y+ W+++ M+
Sbjct: 185 KDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRI-VLGDYD 88
IVGG+ + PW L+ +G CG +LIN +V++AAHC ++K + I VLG++D
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
S E R V+ ++ + NHDIALL+L +PV T V P+CLP
Sbjct: 61 LS---EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLP 112
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 186 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 245
VLG++D S E R V+ ++ + NHDIALL+L +PV T V P+CL
Sbjct: 55 VLGEHDLS---EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCL 111
Query: 246 PPDNIDPSG----KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK---PSRI 298
P + V GWG+ + G+ A E + + VP L C K I
Sbjct: 112 PERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNI 171
Query: 299 TPNMLCAGR--GEMDSCQ 314
T M CAG G DSC+
Sbjct: 172 TEYMFCAGYSDGSKDSCK 189
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 329 HFLSTDIDPSGKMG--------TVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK 379
HF+ P + G V GWG E + L E +V ++ G C + ++
Sbjct: 115 HFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWY 174
Query: 380 PSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGR--YELVGIVSWGVGCGRPGYPGVY 435
RI +CAG G++D+CQGDSGGPL+ D Y +VGI SWGVGC R PGVY
Sbjct: 175 NGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVY 234
Query: 436 TRVNRYLSWVKRNMKDTCL 454
T YL+W+ + T +
Sbjct: 235 TSTWSYLNWIASKIGSTAV 253
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 30 IVGGRPTGVNKYPWVARL---VYDGN--FH-CGASLINEDYVLTAAHCVR-RLKRSKIRI 82
I+GG+ +PW+ L Y N +H CG SL+N ++LTAAHC R + K + R+
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 83 VLG--DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
+ G + + P R V I+ H + ++ +DIAL+K+ PV+ + P
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120
Query: 141 CLP 143
CLP
Sbjct: 121 CLP 123
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 176 VKLVSSKIRIVLG--DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKP 233
+K + R++ G + + P R V I+ H + ++ +DIAL+K+ P
Sbjct: 51 IKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPP 110
Query: 234 VSFTKSVRPICLPPDNIDPSGKMGT--VVGWGRTSEGGSLATEAL-EVQVPILSPGQCRA 290
V+ + P CLP P T V GWG E + L E +V ++ G C +
Sbjct: 111 VTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNS 170
Query: 291 MKYKPSRITPNMLCAG--RGEMDSCQ 314
++ RI +CAG G++D+CQ
Sbjct: 171 TRWYNGRIRSTNVCAGYPEGKIDTCQ 196
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G A ++VP++ C R+ K+ I NM CAG G DSC
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT---IYNNMFCAGFHEGGRDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
ET R V I+ H +++ +N YNHDIALL+L +P+ V PIC+ D E
Sbjct: 58 --IEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICI-ADKE 114
Query: 148 YHTV 151
Y +
Sbjct: 115 YTNI 118
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKS 239
KI +V G+++ ET R V I+ H +++ +N YNHDIALL+L +P+
Sbjct: 48 KITVVAGEHN---IEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSY 104
Query: 240 VRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKP 295
V PIC+ NI G V GWGR G A ++VP++ C R+ K+
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT- 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
I NM CAG G DSCQ
Sbjct: 164 --IYNNMFCAGFHEGGRDSCQ 182
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 346 GWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG---RGEM-----D 396
G+G+ +E L E V + +C +T NMLCAG GE+ D
Sbjct: 151 GYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNVHD 210
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+CQGDSGGPL+ + L+GI+SWGVGCG PGVYT+V YL W++ NM
Sbjct: 211 ACQGDSGGPLVCMNDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDNM 263
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 27 EVRIVGGRPTGVNKYPWVARLVYDGN------FHCGASLINEDYVLTAAHCVRR-LKRSK 79
++ GG T + +PW A + F CG LI+ +VLTAAHC + +
Sbjct: 11 QLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCFQESYLPDQ 70
Query: 80 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLR----KPVSFTK 135
+++VLG ++ + E V + H+ FD + YN+DIALL+L+ + +
Sbjct: 71 LKVVLG---RTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESD 127
Query: 136 SVRPICLP 143
SVR ICLP
Sbjct: 128 SVRAICLP 135
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLR----KPVSFT 237
++++VLG ++ + E V + H+ FD + YN+DIALL+L+ + +
Sbjct: 70 QLKVVLG---RTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQES 126
Query: 238 KSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKP 295
SVR ICLP N+ P + G+G+ +E L E V + +C
Sbjct: 127 DSVRAICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFN 186
Query: 296 SRITPNMLCAG---RGEM-----DSCQ 314
+T NMLCAG GE+ D+CQ
Sbjct: 187 KTVTNNMLCAGDTRSGEIYPNVHDACQ 213
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A P +IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASY--PGKITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G SCQGDSGGP++ N EL GIVSWG GC P P VYT+V Y+ W++
Sbjct: 163 VGFLEGGKGSCQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPDVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD N+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A P +IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G SCQ
Sbjct: 158 DNMVCVGFLEGGKGSCQ 174
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD N+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP 106
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L + P+G + GWG T G + L+ + P+L C A IT NM+C
Sbjct: 105 LPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASS--SFIITDNMVC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G D+CQGDSGGP++ N EL GIVSWG GC P PGVYT+V Y+ W++
Sbjct: 163 VGFLEGGKDACQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLIN+ +V++AAHC + S+I++ LG+++
Sbjct: 1 IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYK----SRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + I++H +FD YN+DI L+KL PV V + LP
Sbjct: 56 NVLEGNEQ---FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP 106
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ +V + + I++H +FD YN+DI L+KL PV V
Sbjct: 44 SRIQVRLGEHNINVLEGNEQ---FVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRIT 299
+ L P + P+G + GWG T G + L+ + P+L C A IT
Sbjct: 101 ATVAL-PSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS--SSFIIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+C G G D+CQ
Sbjct: 158 DNMVCVGFLEGGKDACQ 174
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 325 HLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 384
++H L T+ M TV GWG T + + + +PILS C A Y P IT
Sbjct: 99 YVHAVALPTECAADATMCTVSGWGNTMSSVADGDKLQCLSLPILSHADC-ANSY-PGMIT 156
Query: 385 PNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
+M CAG G DSCQGDSGGP++ N V L G+VSWG GC +PGVY +V
Sbjct: 157 QSMFCAGYLEGGKDSCQGDSGGPVVCNGV----LQGVVSWGYGCAERDHPGVYAKVCVLS 212
Query: 443 SWVKRNM 449
WV+ M
Sbjct: 213 GWVRDTM 219
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S +R+ LG++ V T + + SS++RH ++ N N+DI L+KL KP + + V
Sbjct: 44 SVLRVRLGEHHIRVNEGTEQYI---SSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+ LP + M TV GWG T + + + +PILS C A Y P IT
Sbjct: 101 HAVALPTE-CAADATMCTVSGWGNTMSSVADGDKLQCLSLPILSHADC-ANSY-PGMITQ 157
Query: 301 NMLCAG--RGEMDSCQ 314
+M CAG G DSCQ
Sbjct: 158 SMFCAGYLEGGKDSCQ 173
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG K+ ++ + +H CG SL+++D+V++AAHC + S +R+ LG++
Sbjct: 1 IVGGYE--CTKHSQAHQVSLNSGYHFCGGSLVSKDWVVSAAHCYK----SVLRVRLGEHH 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
V T + + SS++RH ++ N N+DI L+KL KP + + V + LP +
Sbjct: 55 IRVNEGTEQYI---SSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYVHAVALPTE 108
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 342 GTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEMDSC 398
G V GWGR G A ++VP++ C R+ K+ I NM CAG G DSC
Sbjct: 125 GYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT---IYNNMFCAGFHEGGRDSC 181
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
QGD+GGP + G L GI+SWG C G G+YT+V+RY++W+K K T
Sbjct: 182 QGDAGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT 235
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 8/124 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
ET R V I+ H +++ +N YNHDIALL+L +P+ V PIC+ D E
Sbjct: 58 --IEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICI-ADKE 114
Query: 148 YHTV 151
Y +
Sbjct: 115 YTNI 118
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKS 239
KI +V G+++ ET R V I+ H +++ +N YNHDIALL+L +P+
Sbjct: 48 KITVVAGEHN---IEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSY 104
Query: 240 VRPICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKP 295
V PIC+ NI G V GWGR G A ++VP++ C R+ K+
Sbjct: 105 VTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT- 163
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
I NM CAG G DSCQ
Sbjct: 164 --IYNNMFCAGFHEGGRDSCQ 182
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 298 ITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFL--STDIDPSGKMGTVVGWGRTSEGGS 355
+ P A G + +L SH+H L +++ P G V GWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 356 LATE--ALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDSCQGDSGGP 405
L +V+VPI+ C A KY T +MLCAG DSCQGDSGGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGP 197
Query: 406 LIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
L+ G + G+VSWG GC +P PG+YTRV YL W+
Sbjct: 198 LVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L G + CG SLI+ +VLTAAHCV + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F DIALL+L +PV + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F DIALL+L +PV + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDS 312
G L +V+VPI+ C A KY T +MLCAG DS
Sbjct: 131 GDVDNDERLPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDS 189
Query: 313 CQ 314
CQ
Sbjct: 190 CQ 191
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 298 ITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFL--STDIDPSGKMGTVVGWGRTSEGGS 355
+ P A G + +L SH+H L +++ P G V GWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 356 LATE--ALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDSCQGDSGGP 405
L +V+VPI+ C A KY T +MLCAG DSCQGDSGGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGP 197
Query: 406 LIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
L+ G + G+VSWG GC +P PG+YTRV YL W+
Sbjct: 198 LVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L G + CG SLI+ +VLTAAHCV + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F DIALL+L +PV + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F DIALL+L +PV + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDS 312
G L +V+VPI+ C A KY T +MLCAG DS
Sbjct: 131 GDVDNDERLPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDS 189
Query: 313 CQ 314
CQ
Sbjct: 190 CQ 191
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATE--ALEVQVPILSPGQCRAMKYKPSR------- 382
+++ P G V GWG L +V+VPI+ C A + +
Sbjct: 115 ASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRI 174
Query: 383 ITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
I +MLCAG + DSCQGDSGGPL+ G + G+VSWG GC +P PG+YTRV YL
Sbjct: 175 IRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 443 SWVKR 447
W+
Sbjct: 235 DWIHH 239
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L + CG SLI+ +VLTAAHCV + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F + DIALL+L +PV+ + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F + DIALL+L +PV+ + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSR-------ITPNMLCAGRGEMDSC 313
G L +V+VPI+ C A + + I +MLCAG + DSC
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSC 190
Query: 314 Q 314
Q
Sbjct: 191 Q 191
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 298 ITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFL--STDIDPSGKMGTVVGWGRTSEGGS 355
+ P A G + +L SH+H L +++ P G V GWG
Sbjct: 79 VHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDER 138
Query: 356 LATE--ALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDSCQGDSGGP 405
L +V+VPI+ C A KY T +MLCAG DSCQGDSGGP
Sbjct: 139 LPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGP 197
Query: 406 LIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
L+ G + G+VSWG GC +P PG+YTRV YL W+
Sbjct: 198 LVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L G + CG SLI+ +VLTAAHCV + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F DIALL+L +PV + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F DIALL+L +PV + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSRIT--------PNMLCAGRGEMDS 312
G L +V+VPI+ C A KY T +MLCAG DS
Sbjct: 131 GDVDNDERLPPPFPLKQVKVPIMENHICDA-KYHLGAYTGDDVRIVRDDMLCAGNTRRDS 189
Query: 313 CQ 314
CQ
Sbjct: 190 CQ 191
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 334 DIDPSGKMGTVVGWG----RTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNML 388
+++ +G+ V GWG R E T L +++P++ +C + + ++ NML
Sbjct: 118 ELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM--SNMVSENML 175
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG D+C+GDSGGP++ + G + LVG+VSWG GCG GVYT+V+RYL W+
Sbjct: 176 CAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH 235
Query: 447 RNMKD 451
+++D
Sbjct: 236 GHIRD 240
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPW-VARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
++ G+ T PW V L CGA LI+ +VLTAAHC+ K+ +R LG+YD
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVR--LGEYD 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
E E + + + H ++ + ++DIALL L +P + ++++ PICLP
Sbjct: 59 LR-RWEKWELDL--DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
S K+ + LG+YD E E + + + H ++ + ++DIALL L +P + +++
Sbjct: 47 SKKLLVRLGEYDLR-RWEKWELDL--DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT 103
Query: 240 VRPICLPPD-----NIDPSGKMGTVVGWG----RTSEGGSLATEALE-VQVPILSPGQCR 289
+ PICLP ++ +G+ V GWG R E T L +++P++ +C
Sbjct: 104 IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECS 163
Query: 290 AMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ + ++ NMLCAG D+C+
Sbjct: 164 EV--MSNMVSENMLCAGILGDRQDACE 188
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query: 334 DIDPSGKMGTVVGWG----RTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNML 388
+++ +G+ V GWG R E T L +++P++ +C + + ++ NML
Sbjct: 118 ELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVM--SNMVSENML 175
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG D+C+GDSGGP++ + G + LVG+VSWG GCG GVYT+V+RYL W+
Sbjct: 176 CAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH 235
Query: 447 RNMKD 451
+++D
Sbjct: 236 GHIRD 240
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPW-VARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
++ G+ T PW V L CGA LI+ +VLTAAHC+ K+ +R LG+YD
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVR--LGEYD 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
E E + + + H ++ + ++DIALL L +P + ++++ PICLP
Sbjct: 59 LR-RWEKWELDL--DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLP 110
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
S K+ + LG+YD E E + + + H ++ + ++DIALL L +P + +++
Sbjct: 47 SKKLLVRLGEYDLR-RWEKWELDL--DIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT 103
Query: 240 VRPICLPPD-----NIDPSGKMGTVVGWG----RTSEGGSLATEALE-VQVPILSPGQCR 289
+ PICLP ++ +G+ V GWG R E T L +++P++ +C
Sbjct: 104 IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECS 163
Query: 290 AMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ + ++ NMLCAG D+C+
Sbjct: 164 EV--MSNMVSENMLCAGILGDRQDACE 188
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAGRGEM-- 395
G+ TVVGWGRT E G +T ++ VP++ QC + R+ + LCAG GE
Sbjct: 164 GQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAG-GEKAK 221
Query: 396 DSCQGDSGGPLIINDVGR-YELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
DSC GDSGGPL+ + + L G+VS+G CG G+PG+YT+V +Y W++ N++
Sbjct: 222 DSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR 277
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 27/206 (13%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGN-----FHCGASLINEDYVLTAAHCVR- 73
+CG + +I+ G T ++PW A + Y + F CG SLIN Y++TAAHCV
Sbjct: 13 DCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAG 72
Query: 74 ---RLKRSKIRIVLGDYDQSVTTE--------TAEPTMMRAVSSIVRHRHF--DVNNYNH 120
R+ + ++ LG+++ + + + + + ++H + + H
Sbjct: 73 RVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYH 132
Query: 121 DIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVS 180
DIAL++L + V FT +RP+CLP +E ++ QR V+ +G G +
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNE-------EVQVGQRLTVVGWGRTETGQ-YSTIK 184
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRA 206
K+ + + +Q T A +R+
Sbjct: 185 QKLAVPVVHAEQCAKTFGAAGVRVRS 210
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 223 HDIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVP 281
HDIAL++L + V FT +RP+CLP P+ G+ TVVGWGRT E G +T ++ VP
Sbjct: 132 HDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVP 190
Query: 282 ILSPGQC-RAMKYKPSRITPNMLCAGRGE--MDSC 313
++ QC + R+ + LCAG GE DSC
Sbjct: 191 VVHAEQCAKTFGAAGVRVRSSQLCAG-GEKAKDSC 224
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 17/159 (10%)
Query: 29 RIVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVL 84
R+ G ++ PW+A L Y + F CG ++I+E Y+LTAAHCV L+ I L
Sbjct: 118 RVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRL 177
Query: 85 GDY---------DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
G++ Q + A P + + + H +D + HDIALLKL + V F K
Sbjct: 178 GEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQK 237
Query: 136 SVRPICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGS 174
++PICLP E +K V +GT +GS
Sbjct: 238 HIKPICLPITDE----LKEKAEQISTYFVTGWGTTENGS 272
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 162 AAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY 221
AA G Q D +++L +I Q + A P + + + H +D +
Sbjct: 161 AAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHI 220
Query: 222 NHDIALLKLRKPVSFTKSVRPICLP-PDNIDPSGKMGT---VVGWGRTSEGGSLATEALE 277
HDIALLKL + V F K ++PICLP D + + + V GWG T+E GS + L+
Sbjct: 221 MHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWG-TTENGSSSDVLLQ 279
Query: 278 VQVPILSPGQCRAMKYKPSRITP-NMLCAGRGEM-DSCQ 314
VP L P + Y+ R P + LC G G++ DSC+
Sbjct: 280 ANVP-LQPRSACSQAYR--RAVPLSQLCVGGGDLQDSCK 315
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP-NMLCAGRGEM-DSCQGD 401
V GWG T+E GS + L+ VP L P + Y+ R P + LC G G++ DSC+GD
Sbjct: 262 VTGWG-TTENGSSSDVLLQANVP-LQPRSACSQAYR--RAVPLSQLCVGGGDLQDSCKGD 317
Query: 402 SGGPLII--NDVGRYE----LVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVKRNMKDTCL 454
SGGPL +G Y GIVS GV CG+ PG+YT V Y+ W+ M L
Sbjct: 318 SGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGL 377
Query: 455 CVS 457
S
Sbjct: 378 LES 380
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS + IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSAIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ N N+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS + IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSAIITSNMFCAGYLEGGKDSCQ 174
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYKPSRITPNML 388
P+G TV GWG + SL T +++VP++S C A+ +P + +M+
Sbjct: 119 PNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMV 178
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG G D+CQGDSGGPL G + L GIVSWG CG PGVYT + Y SW++
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQ 238
Query: 447 RNMKDTCL 454
+ + L
Sbjct: 239 SKVTELQL 246
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-RRLKRSKIRIVLGDYD 88
I GG ++PW + Y+G CG SL++E +VL+AAHC + + LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+E A+ + ++ I+ H + DIALL+L +P++F++ +RPI LP
Sbjct: 61 LDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 243
+ LG + +E A+ + ++ I+ H + DIALL+L +P++F++ +RPI
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 244 CLPPDNID-PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYK 294
LP N P+G TV GWG + SL T +++VP++S C A+ +
Sbjct: 110 SLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEE 169
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
P + +M+CAG G D+CQ
Sbjct: 170 PHFVQEDMVCAGYVEGGKDACQ 191
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Query: 351 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLII 408
S G S + ++ P+LS C++ P +IT NM+C G G DSCQGDSGGP++
Sbjct: 1 SSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQGDSGGPVVC 58
Query: 409 NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 59 NG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95
Score = 32.7 bits (73), Expect = 0.41, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 266 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
S G S + ++ P+LS C++ P +IT NM+C G G DSCQ
Sbjct: 1 SSGSSYPSLLQCLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCQ 49
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS C++ + IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRI--ITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 77/179 (43%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ N N+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS C++ + IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRI--ITSNMFCAGYLEGGKDSCQ 174
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 8/101 (7%)
Query: 351 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLII 408
S G S + ++ P+LS C++ P +IT NM+C G +G DSCQGDSGGP++
Sbjct: 1 SSGSSYPSLLQCLKAPVLSNSSCKSSY--PGQITGNMICVGFLQGGKDSCQGDSGGPVVC 58
Query: 409 NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
N +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 59 NG----QLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTI 95
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 266 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
S G S + ++ P+LS C++ P +IT NM+C G +G DSCQ
Sbjct: 1 SSGSSYPSLLQCLKAPVLSNSSCKSSY--PGQITGNMICVGFLQGGKDSCQ 49
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATE--ALEVQVPILSPGQCRAMKYKPSR------- 382
+++ P G V GWG L +V+VPI+ C A + +
Sbjct: 115 ASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRI 174
Query: 383 ITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
I +MLCAG + DSC+GDSGGPL+ G + G+VSWG GC +P PG+YTRV YL
Sbjct: 175 IRDDMLCAGNSQRDSCKGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 443 SWV 445
W+
Sbjct: 235 DWI 237
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L + CG SLI+ +VLTAAHCV + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F + DIALL+L +PV+ + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F + DIALL+L +PV+ + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSR-------ITPNMLCAGRGEMDSC 313
G L +V+VPI+ C A + + I +MLCAG + DSC
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSC 190
Query: 314 Q 314
+
Sbjct: 191 K 191
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 344 VVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
V GWG E G + L E +V ++ C + ++ RI +CAG RG++D+CQG
Sbjct: 138 VTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQG 197
Query: 401 DSGGPLIINDVGR--YELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDTCL 454
DSGGPL+ D + +VGI SWGVGC R PGVYT YL+W+ + L
Sbjct: 198 DSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKIGSNAL 253
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 16/177 (9%)
Query: 30 IVGGRPTGVNKYPWVARL---VYDGN--FH-CGASLINEDYVLTAAHCVRRLKR-SKIRI 82
+VGG +PW+ L +Y N +H CG L+N +VLTAAHC + K+ + R+
Sbjct: 1 VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTDWRL 60
Query: 83 VLGDYD--QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
+ G + P R V I+ H + +DIAL+K+ PV + P
Sbjct: 61 IFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPG 120
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD-GSDVKLVSSKIRIVLGDYDQSVTT 196
CLP G R Q V +G ++ G + R+ L D + +T
Sbjct: 121 CLP------QFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNST 171
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 10/157 (6%)
Query: 163 AVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYN 222
A F ++ +D +L+ +V G P R V I+ H +
Sbjct: 45 AAHCFKNKKKVTDWRLIFGANEVVWGS-----NKPVKPPLQERFVEEIIIHEKYVSGLEI 99
Query: 223 HDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT--VVGWGRTSEGGSLATEAL-EVQ 279
+DIAL+K+ PV + P CLP P T V GWG E G + L E +
Sbjct: 100 NDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEAR 159
Query: 280 VPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
V ++ C + ++ RI +CAG RG++D+CQ
Sbjct: 160 VALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQ 196
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYKPSRITPNML 388
P+G TV GWG + SL T +++VP++S C ++ +P + +M+
Sbjct: 119 PNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMV 178
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG G D+CQGDSGGPL G + L GIVSWG CG PGVYT + Y SW++
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQ 238
Query: 447 RNMKD 451
+ +
Sbjct: 239 SKVTE 243
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-RRLKRSKIRIVLGDYD 88
I GG ++PW + Y+G CG SL++E +VL+AAHC + + LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+E A+ + ++ I+ H + DIALL+L +P++F++ +RPI LP
Sbjct: 61 LDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 243
+ LG + +E A+ + ++ I+ H + DIALL+L +P++F++ +RPI
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 244 CLPPDNID-PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYK 294
LP P+G TV GWG + SL T +++VP++S C ++ +
Sbjct: 110 SLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEE 169
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
P + +M+CAG G D+CQ
Sbjct: 170 PHFVQEDMVCAGYVEGGKDACQ 191
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 10/125 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYKPSRITPNML 388
P+G TV GWG + SL T +++VP++S C ++ +P + +M+
Sbjct: 119 PNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMV 178
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG G D+CQGDSGGPL G + L GIVSWG CG PGVYT + Y SW++
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQ 238
Query: 447 RNMKD 451
+ +
Sbjct: 239 SKVTE 243
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-RRLKRSKIRIVLGDYD 88
I GG ++PW + Y+G CG SL++E +VL+AAHC + + LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+E A+ + ++ I+ H + DIALL+L +P++F++ +RPI LP
Sbjct: 61 LDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 243
+ LG + +E A+ + ++ I+ H + DIALL+L +P++F++ +RPI
Sbjct: 53 EVKLGAHQLDSYSEDAKVSTLK---DIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 244 CLPPDNID-PSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM------KYK 294
LP P+G TV GWG + SL T +++VP++S C ++ +
Sbjct: 110 SLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEE 169
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
P + +M+CAG G D+CQ
Sbjct: 170 PHFVQEDMVCAGYVEGGKDACQ 191
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSYIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ N N+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSYIITSNMFCAGYLEGGKDSCQ 174
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 340 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK---PSRITPNMLCAGR--GE 394
+ V GWG+ + G+ A + VP L C K IT M CAG G
Sbjct: 125 RFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGS 184
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
DSC+GDSGGP + G + L GIVSWG GC G+ GVYTRV++Y+ W+++ M+
Sbjct: 185 KDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRI-VLGDYD 88
IVGG+ + PW L+ +G CG +LIN +V++AAHC ++K + I VLG++D
Sbjct: 1 IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
S E R V+ ++ + NHDIALL+L +PV T V P+CLP
Sbjct: 61 LS---EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLP 112
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 186 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 245
VLG++D S E R V+ ++ + NHDIALL+L +PV T V P+CL
Sbjct: 55 VLGEHDLS---EHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCL 111
Query: 246 PPDNIDPSG----KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK---PSRI 298
P + V GWG+ + G+ A + VP L C K I
Sbjct: 112 PERTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNI 171
Query: 299 TPNMLCAGR--GEMDSCQ 314
T M CAG G DSC+
Sbjct: 172 TEYMFCAGYSDGSKDSCK 189
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ N N+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDSCQ 174
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSWIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ N N+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSWIITSNMFCAGYLEGGKDSCQ 174
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
TV GWG EGGS L+ VP +S CR+ Y + +CAG G +D+CQG
Sbjct: 111 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSA-YGNELVANEEICAGYDTGGVDTCQG 169
Query: 401 DSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
DSGGP+ D + VGIVSWG GC R G GVYT V+ + S
Sbjct: 170 DSGGPMFRKDNADEWIQVGIVSWGEGCARKGKYGVYTEVSTFAS 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 208 SSIVRHRHFDV------NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVG 261
SS V+ R V N D AL+KL +P++ +P + TV G
Sbjct: 60 SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAG 114
Query: 262 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
WG EGGS L+ VP +S CR+ Y + +CAG G +D+CQ
Sbjct: 115 WGANREGGSQQRYLLKANVPFVSDAACRS-AYGNELVANEEICAGYDTGGVDTCQ 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++P++ RL + CG +L +D VLTAAHCV G +
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS-----------GSGNN 45
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDV------NNYNHDIALLKLRKPVS 132
+ T T +++ SS V+ R V N D AL+KL +P++
Sbjct: 46 TSITATGGVVDLQS-SSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPIN 93
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 346 GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCA----GRGEMDSCQG 400
GWG + GG L V + I + C A+ Y I +M+CA G + DSCQG
Sbjct: 128 GWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIYDDMICATDNTGMTDRDSCQG 186
Query: 401 DSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
DSGGPL + D G + LVGIVSWG+GC GYPGVY+RV + W+ + +
Sbjct: 187 DSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTITN 237
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 30 IVGGRPTGVNKYPW---VARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG ++PW V R D +F CG S+IN+ +V+ AAHC++ + + +V+G+
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHF-CGGSIINDRWVVCAAHCMQGEAPALVSLVVGE 59
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP-PD 145
+D S + + V SI + ++D +D++++K ++F +V PIC P P
Sbjct: 60 HDSSAASTVRQ---THDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPA 116
Query: 146 SEY 148
++Y
Sbjct: 117 NDY 119
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+ +V+G++D S + + V SI + ++D +D++++K ++F +V P
Sbjct: 53 VSLVVGEHDSSAASTVRQ---THDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGP 109
Query: 243 ICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPN 301
IC P D + GWG + GG L V + I + C A+ Y I +
Sbjct: 110 ICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIYDD 168
Query: 302 MLCA----GRGEMDSCQ 314
M+CA G + DSCQ
Sbjct: 169 MICATDNTGMTDRDSCQ 185
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 574
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 575 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFH---CGASLINEDYVLTAAHCVRRLK 76
EC T + RIVGG + ++PW L CG S+I ++LTAAHC ++
Sbjct: 379 EC-TTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVE 437
Query: 77 RSKI-RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
KI R+ G +QS E E T V I+ H + + +DIALLKL V++T
Sbjct: 438 SPKILRVYSGILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTD 494
Query: 136 SVRPICLPPDSEYHTV 151
S RPICLP + + +
Sbjct: 495 SQRPICLPSKGDRNVI 510
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +QS E E T V I+ H + + +DIALLKL V++T S RP
Sbjct: 442 LRVYSGILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRP 498
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
ICLP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 499 ICLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 555
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 556 HKMICAGYREGGKDACK 572
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 396
G + V G+G G + QV ++ C + ITP MLCAG G+ D
Sbjct: 117 GDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTD 176
Query: 397 SCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
+CQGDSGGPL+ +D + L GIVSWG C +P PGVYTRV W+
Sbjct: 177 ACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWI 226
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG ++PW A L +DG+ CGA+LIN ++++AAHC K +
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNP------ARWTA 54
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
S M R + I+ H + ++++DI+L +L PV +T +V +CL PD+ Y
Sbjct: 55 SFGVTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCL-PDASY 112
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 203 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNID-PSGKMGTVVG 261
M R + I+ H + ++++DI+L +L PV +T +V +CLP + + G + V G
Sbjct: 65 MKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTG 124
Query: 262 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+G G + QV ++ C + ITP MLCAG G+ D+CQ
Sbjct: 125 FGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQ 179
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T S G E + P+L+ +C+A P +IT +M C
Sbjct: 105 LPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGKITNSMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQ DSGGP++ N +L G+VSWG GC PGVYT+V Y+ W+K
Sbjct: 163 VGFLEGGKDSCQRDSGGPVVCNG----QLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLI+E +V++AAHC +++I++ LG+++
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGSHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V + + AV I+RH ++ + ++DI L+KL P V I LP
Sbjct: 56 KVLEGNEQ--FINAV-KIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP 106
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
++I++ LG+++ V + + AV I+RH ++ + ++DI L+KL P V
Sbjct: 44 TRIQVRLGEHNIKVLEGNEQ--FINAVK-IIRHPKYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T S G E + P+L+ +C+A P +IT
Sbjct: 101 STISLPTAP-PAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
+M C G G DSCQ
Sbjct: 158 NSMFCVGFLEGGKDSCQ 174
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PG+YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PG+YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SL+N +V++AAHC + S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLLNSQWVVSAAHCYK----SGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLLNSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCA 390
++D +G GWG T + + L+ +P+LS C+ KY ++I M+CA
Sbjct: 111 ASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCK--KYWGTKIKDAMICA 168
Query: 391 GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G + SC GDSGGPL+ G + LVGIVSWG PGVY RV ++WV++ +
Sbjct: 169 GASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 227
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IV G +PW L FH CG SLINE++V+TAAHC + S + +V G++D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFD 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
Q ++E + + V ++ +NN DI LLKL SF+++V +CLP S+
Sbjct: 58 QGSSSEKIQKLKIAKVFKNSKYNSLTINN---DITLLKLSTAASFSQTVSAVCLPSASD 113
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
V++ +V G++DQ ++E + + V ++ +NN DI LLKL SF++
Sbjct: 45 VTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINN---DITLLKLSTAASFSQ 101
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPS 296
+V +CLP + D +G GWG T + + L + +P+LS C+ KY +
Sbjct: 102 TVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCK--KYWGT 159
Query: 297 RITPNMLCAGRGEMDSC 313
+I M+CAG + SC
Sbjct: 160 KIKDAMICAGASGVSSC 176
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--ED 53
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 54 NINVVEGNEQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G DSCQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDSCQ 174
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATE--ALEVQVPILSPGQCRAMKYKPSR------- 382
+++ P G V GWG L +V+VPI+ C A + +
Sbjct: 115 ASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRI 174
Query: 383 ITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
I +MLCAG + DSC+GDSGGPL+ G + G+VSW GC +P PG+YTRV YL
Sbjct: 175 IRDDMLCAGNSQRDSCKGDSGGPLVCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYL 234
Query: 443 SWV 445
W+
Sbjct: 235 DWI 237
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG+ +K+PW L + CG SLI+ +VLTAAHC+ + + +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCLGPDVKDLATLRVQL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+Q + + + VS I+ H F + DIALL+L +PV+ + V + LPP S
Sbjct: 61 REQHLYYQD----QLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPAS 116
Query: 147 E 147
E
Sbjct: 117 E 117
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+ VS I+ H F + DIALL+L +PV+ + V + LPP P G V GW
Sbjct: 71 LLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGW 130
Query: 263 GRTSEGGSLAT--EALEVQVPILSPGQCRAMKYKPSR-------ITPNMLCAGRGEMDSC 313
G L +V+VPI+ C A + + I +MLCAG + DSC
Sbjct: 131 GDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGNSQRDSC 190
Query: 314 Q 314
+
Sbjct: 191 K 191
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PG+YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCA 390
++D +G GWG T + + L+ +P+LS C+ KY ++I M+CA
Sbjct: 126 ASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCK--KYWGTKIKDAMICA 183
Query: 391 GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G + SC GDSGGPL+ G + LVGIVSWG PGVY RV ++WV++ +
Sbjct: 184 GASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
RIV G +PW L FH CG SLINE++V+TAAHC + S + +V G++
Sbjct: 15 RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEF 71
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
DQ ++E ++ + ++ ++ N+DI LLKL SF+++V +CLP S+
Sbjct: 72 DQG---SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD 128
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
V++ +V G++DQ ++E ++ + ++ ++ N+DI LLKL SF++
Sbjct: 60 VTTSDVVVAGEFDQG---SSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQ 116
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPS 296
+V +CLP + D +G GWG T + + L + +P+LS C+ KY +
Sbjct: 117 TVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCK--KYWGT 174
Query: 297 RITPNMLCAGRGEMDSC 313
+I M+CAG + SC
Sbjct: 175 KIKDAMICAGASGVSSC 191
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGD+GGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 83/213 (38%), Gaps = 34/213 (15%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQD 315
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWG 348
A + SGK+ +V WG
Sbjct: 176 DA--------------GGPVVCSGKLQGIVSWG 194
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T S G E + P+L+ +C+A P +IT +M C
Sbjct: 105 LPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGKITNSMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQ D+GGP++ N +L G+VSWG GC PGVYT+V Y+ W+K
Sbjct: 163 VGFLEGGKDSCQRDAGGPVVCNG----QLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G CG SLI+E +V++AAHC +++I++ LG+++
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGYHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+RH ++ + ++DI L+KL P V I LP
Sbjct: 56 KV-LEGNEQFINAA--KIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP 106
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
++I++ LG+++ V E E + A I+RH ++ + ++DI L+KL P V
Sbjct: 44 TRIQVRLGEHNIKVL-EGNEQFINAA--KIIRHPKYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T S G E + P+L+ +C+A P +IT
Sbjct: 101 STISLPTAP-PAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
+M C G G DSCQ
Sbjct: 158 NSMFCVGFLEGGKDSCQ 174
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T S G E + P+L+ +C+A P +IT +M C
Sbjct: 105 LPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASY--PGKITNSMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQ D+GGP++ N +L G+VSWG GC PGVYT+V Y+ W+K
Sbjct: 163 VGFLEGGKDSCQRDAGGPVVCNG----QLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLI+E +V++AAHC +++I++ LG+++
Sbjct: 1 IVGGYTCEENSLPYQVSL-NSGSHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+RH ++ + ++DI L+KL P V I LP
Sbjct: 56 KV-LEGNEQFINAA--KIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP 106
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
++I++ LG+++ V E E + A I+RH ++ + ++DI L+KL P V
Sbjct: 44 TRIQVRLGEHNIKVL-EGNEQFINAA--KIIRHPKYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP +G + GWG T S G E + P+L+ +C+A P +IT
Sbjct: 101 STISLPTAP-PAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKAS--YPGKIT 157
Query: 300 PNMLCAG--RGEMDSCQ 314
+M C G G DSCQ
Sbjct: 158 NSMFCVGFLEGGKDSCQ 174
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
TV GWG EGGS L+ VP +S CR+ + M+CAG + D+CQG
Sbjct: 118 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQG 176
Query: 401 DSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
DSGGP+ D + VGIVSWG GC R G GVYT V+ + S
Sbjct: 177 DSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFAS 220
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN-FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
+VGG ++P++ RL+ + N CG +L +D VLTAAHCV + G
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGV- 59
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
V +++ +R+ + +++ F Y D AL+KL +P++
Sbjct: 60 --VDLQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN 100
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 208 SSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSE 267
+ +++ F Y D AL+KL +P++ +P + TV GWG E
Sbjct: 73 TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 127
Query: 268 GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
GGS L+ VP +S CR+ + M+CAG + D+CQ
Sbjct: 128 GGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQ 175
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGD+GGP++ + +L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQD 315
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGR 349
A + SGK+ +V WG
Sbjct: 176 DA--------------GGPVVCSGKLQGIVSWGE 195
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 11/112 (9%)
Query: 344 VVGWGRTSEGGSLATEALE--VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSC- 398
+ GWG T GS L+ ++ P+LS C++ P +IT NM+C G G DSC
Sbjct: 122 ISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSSY--PGQITGNMICVGFLEGGKDSCS 179
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGC-GRPGYPGVYTRVNRYLSWVKRNM 449
QGDSGGP++ ++ +L GIVSWG GC + PGVYT+V Y++W+++ +
Sbjct: 180 QGDSGGPVVCSN---GQLQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTI 228
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 47 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 103
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE--VQVPILSPGQCRAMKYKPSRI 298
+ LP + + GWG T GS L+ ++ P+LS C++ P +I
Sbjct: 104 ATVSLPRSCAAAGTECSLISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSS--YPGQI 161
Query: 299 TPNMLCAG--RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWG 348
T NM+C G G DSC P + +G++ +V WG
Sbjct: 162 TGNMICVGFLEGGKDSCSQGDSGGPV------------VCSNGQLQGIVSWG 201
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 30 IVGGRP-TGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG + N P+ L +F G SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCSAANSIPYQVSLNSGSHFCSGGSLINSQWVVSAAHCSY---KSRIQVRLGEHN 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 58 IDV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 109
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--ED 53
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 54 NINVVEGNEQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQG 400
TV GWG EGGS L+ VP +S CR+ + M+CAG + D+CQG
Sbjct: 113 TVAGWGANREGGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQG 171
Query: 401 DSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
DSGGP+ D + VGIVSWG GC R G GVYT V+ + S
Sbjct: 172 DSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFAS 215
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++P++ RL + CG +L +D VLTAAHCV + G
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGV-- 54
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
V +++ +R+ + +++ F Y D AL+KL +P++
Sbjct: 55 -VDLQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN 95
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 208 SSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSE 267
+ +++ F Y D AL+KL +P++ +P + TV GWG E
Sbjct: 68 TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAYNQGTFTVAGWGANRE 122
Query: 268 GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
GGS L+ VP +S CR+ + M+CAG + D+CQ
Sbjct: 123 GGSQQRYLLKANVPFVSDAACRSSS-SFILVANEMICAGYDTKQEDTCQ 170
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRALRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E E T V I+ H + + +DIALLKL V++ S RPICLP
Sbjct: 61 ILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E E T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
ICLP N+ + V GWG + + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ICLPSKGDRNVIYTDCW--VTGWGYRALRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQGD 401
++GWG+T++G T + ++S +C P +IT NMLCAG + DSCQGD
Sbjct: 119 ILGWGKTADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQGD 175
Query: 402 SGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNMK 450
SGGPL+ D L G+VSWG + CG PGVYT V RY +W+++ ++
Sbjct: 176 SGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 16/144 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+V G P +P+ A L G+ CG LI+ +VLTAAHC K+ +++ LG ++
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ E + +V V H +D +++ DI LL+L +P ++ ++P+ L D +
Sbjct: 57 RQRESSQEQS---SVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAN 113
Query: 150 TVVKGTMRCRQRAAVLAFGTQRDG 173
T +L +G DG
Sbjct: 114 TT---------SCHILGWGKTADG 128
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 208 SSIVR---HRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGR 264
SS+VR H +D +++ DI LL+L +P ++ ++P+ L D + ++GWG+
Sbjct: 66 SSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERD-CSANTTSCHILGWGK 124
Query: 265 TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQ 314
T++G T + ++S +C P +IT NMLCAG + DSCQ
Sbjct: 125 TADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQ 173
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGD+GGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG G N P+ L + +H CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL--NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 54
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 55 INVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 83/213 (38%), Gaps = 34/213 (15%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQD 315
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWG 348
A + SGK+ +V WG
Sbjct: 176 DA--------------GGPVVCSGKLQGIVSWG 194
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E E T V I+ H + + +DIALLKL V++ S RPI LP
Sbjct: 61 ILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E E T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+QS E E T V I+ H + + +DIALLKL V++T S RPI LP
Sbjct: 61 ILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +QS E E T V I+ H + + +DIALLKL V++T S RP
Sbjct: 55 LRVYSGILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+QS E E T V I+ H + + +DIALLKL V++T S RPICLP
Sbjct: 61 ILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +QS E E T V I+ H + + +DIALLKL V++T S RP
Sbjct: 55 LRVYSGILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
ICLP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ICLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E AE T V I+ H + + +DIALLKL V++ S RPI LP
Sbjct: 61 ILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E AE T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E E T V I+ H + + +DIALLKL V++ S RPICLP
Sbjct: 61 ILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E E T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
ICLP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ICLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQGD 401
++GWG+T++G T + ++S +C P +IT NMLCAG + DSCQGD
Sbjct: 120 ILGWGKTADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQGD 176
Query: 402 SGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNMK 450
SGGPL+ D L G+VSWG + CG PGVYT V RY +W+++ ++
Sbjct: 177 SGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 222
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
++V G P +P+ A L G+ CG LI+ +VLTAAHC K+ +++ LG ++
Sbjct: 1 KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHN 56
Query: 89 -QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
+ + + +++RAV H +D +++ DI LL+L +P ++ ++P+ L D
Sbjct: 57 LRQQESSQEQSSVVRAVI----HPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS 112
Query: 148 YHTVVKGTMRCRQRAAVLAFGTQRDG 173
T +L +G DG
Sbjct: 113 AQTT---------SCHILGWGKTADG 129
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT--VVGWGR 264
V V H +D +++ DI LL+L +P ++ ++P+ P D S + + ++GWG+
Sbjct: 69 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL---PLERDCSAQTTSCHILGWGK 125
Query: 265 TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQ 314
T++G T + ++S +C P +IT NMLCAG + DSCQ
Sbjct: 126 TADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQ 174
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+QS E AE T V I+ H + + +DIALLKL V++T S RPI LP
Sbjct: 61 ILNQS---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +QS E AE T V I+ H + + +DIALLKL V++T S RP
Sbjct: 55 LRVYSGILNQS---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGDSGGP++ + +L GIVSWG GC + PG YT++ Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--ED 53
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 54 NINVVEGNEQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQ 174
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+QS E E T V I+ H + + +DIALLKL V++T S RPI LP
Sbjct: 61 ILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 146 SEYHTV 151
E + +
Sbjct: 118 GERNVI 123
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +QS E E T V I+ H + + +DIALLKL V++T S RP
Sbjct: 55 LRVYSGILNQS---EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGERNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E AE T V I+ H + + +DIALLKL V++ S RPICLP
Sbjct: 61 ILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E AE T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
ICLP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ICLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQGD 401
++GWG+T++G T + ++S +C P +IT NMLCAG + DSCQGD
Sbjct: 119 ILGWGKTADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQGD 175
Query: 402 SGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNMK 450
SGGPL+ D L G+VSWG + CG PGVYT V RY +W+++ ++
Sbjct: 176 SGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+V G P +P+ A L G+ CG LI+ +VLTAAHC K+ +++ LG ++
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ +V V H +D +++ DI LL+L +P ++ ++P+ L D
Sbjct: 57 GQQESS---QEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQ 113
Query: 150 TVVKGTMRCRQRAAVLAFGTQRDG 173
T +L +G DG
Sbjct: 114 TT---------SCHILGWGKTADG 128
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT--VVGWGR 264
V V H +D +++ DI LL+L +P ++ ++P+ P D S + + ++GWG+
Sbjct: 68 VVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL---PLERDCSAQTTSCHILGWGK 124
Query: 265 TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM--DSCQ 314
T++G T + ++S +C P +IT NMLCAG + DSCQ
Sbjct: 125 TADGDFPDTIQC-AYIHLVSREECEHAY--PGQITQNMLCAGDEKYGKDSCQ 173
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGD 401
V GWG + + ++P+++ +C+ +Y+ +IT M+CAG G D+C+GD
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKITHKMICAGYREGGKDACKGD 187
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
SGGPL + LVGI SWG GC + PGVYT V Y+ W+
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ KI R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+Q+ E AE T V I+ H + + +DIALLKL V++ S RPI LP
Sbjct: 61 ILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSK 117
Query: 146 SEYHTV 151
+ + +
Sbjct: 118 GDRNVI 123
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+R+ G +Q+ E AE T V I+ H + + +DIALLKL V++ S RP
Sbjct: 55 LRVYSGILNQA---EIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRP 111
Query: 243 ICLPPD---NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
I LP N+ + V GWG + + ++P+++ +C+ +Y+ +IT
Sbjct: 112 ISLPSKGDRNVIYTDCW--VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK-RYRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G D+CQGD+GGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDACQGDAGGPVVCSG----KLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 83/214 (38%), Gaps = 34/214 (15%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQD 315
+ GWG T G+ + L+ ++ PILS IT NM CAG G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 316 LAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGR 349
A + SGK+ +V WG
Sbjct: 176 DA--------------GGPVVCSGKLQGIVSWGE 195
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G D+CQGDSGGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 VGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ--FISASKSIV-HPSYNSETYNNDIMLIKLKSAASLXSRVASISLP 106
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLXSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM C G G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCVGYLEGGKDACQ 174
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L+ ++ PILS IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G D+CQGDSGGP++ + +L GIVSWG GC + PG YT+V Y+SW+K+
Sbjct: 163 VGYLEGGKDACQGDSGGPVVCSG----KLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQ 218
Query: 448 NM 449
+
Sbjct: 219 TI 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC +S I++ LG +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLG--ED 53
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + A SIV H ++ YN+DI L+KL+ S V I LP
Sbjct: 54 NINVVEGNEQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLP 106
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query: 139 PICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTET 198
P + +S YH G + V A + G V+L I +V G+
Sbjct: 13 PYQVSLNSGYHFC--GGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGN--------- 61
Query: 199 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGT 258
+ A SIV H ++ YN+DI L+KL+ S V I LP +G
Sbjct: 62 --EQFISASKSIV-HPSYNSETYNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCL 117
Query: 259 VVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ GWG T G+ + L+ ++ PILS IT NM C G G D+CQ
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDS--SCKSASSFIITSNMFCVGYLEGGKDACQ 174
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 339 GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGE-MD 396
G+ + GWG TS + +V I S +C + P +IT M+CAG D
Sbjct: 117 GQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE--RAYPGKITEGMVCAGSSNGAD 174
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNM 449
+CQGDSGGPL+ + + L GI SWG CG+P PGVYT++ RY +W+K+ M
Sbjct: 175 TCQGDSGGPLVCDGM----LQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ GR + PW A L CG L+ + +VLTAAHC K+ K + LGD+
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC----KKQKYSVRLGDHS- 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNN---YNHDIALLKLRKPVSFTKSVRPICL 142
+P V+ ++H ++ +N ++HDI L++L+ + V+P+ L
Sbjct: 56 --LQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL 109
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---YNHDIALLKLRKPVSFTK 238
K + LGD+ +P V+ ++H ++ +N ++HDI L++L+ +
Sbjct: 46 KYSVRLGDHS---LQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGD 102
Query: 239 SVRPICLPPDNIDPS-GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V+P+ L N+ P G+ + GWG TS + +V I S +C + P
Sbjct: 103 KVKPVQLA--NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE--RAYPG 158
Query: 297 RITPNMLCAGRGE-MDSCQ 314
+IT M+CAG D+CQ
Sbjct: 159 KITEGMVCAGSSNGADTCQ 177
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 362 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVS 421
+ +PI+S C+ K S+IT M CAG +DSC GDSGGPL+ G + L GIVS
Sbjct: 11 QAALPIVSEADCK--KSWGSKITDVMTCAGASGVDSCMGDSGGPLVCQKDGVWTLAGIVS 68
Query: 422 WGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
WG G PGVY+RV + WV++ ++
Sbjct: 69 WGSGVCSTSTPGVYSRVTALMPWVQQILE 97
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 277 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSC 313
+ +PI+S C+ K S+IT M CAG +DSC
Sbjct: 11 QAALPIVSEADCK--KSWGSKITDVMTCAGASGVDSC 45
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 321 PTESHLHFHFLSTDID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKY- 378
PT S + S+D + G +G + GWGRT E A ++P+ +C+ +K
Sbjct: 188 PTVSPICLPGTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAARLPVAPLRKCKEVKVE 246
Query: 379 KPSR------ITPNMLCAGRGE--MDSCQGDSGGPLII---NDVGRYELVGIVSWGVGCG 427
KP+ TPNM+CAG GE MDSC+GDSGG + ND ++ G+VSWG CG
Sbjct: 247 KPTADAEAYVFTPNMICAG-GEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG 305
Query: 428 RPGYPGVYTRVNRYLSWVKRNMKDT 452
G+YTRV Y+ W+ + M++
Sbjct: 306 T---YGLYTRVKNYVDWIMKTMQEN 327
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 17 CLLECGVT----NQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV 72
C+ CGV ++ RI+GG + +PW V+ N G +LINE +VLTAAH V
Sbjct: 66 CVPVCGVPREPFEEKQRIIGGSDADIKNFPW---QVFFDNPWAGGALINEYWVLTAAHVV 122
Query: 73 RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-------NNYNHDIALL 125
+ + + SV T + M + H + + N+++DIAL+
Sbjct: 123 EGNREPTMYVG----STSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALV 178
Query: 126 KLRKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
+L+ PV +V PICLP S + ++ G +
Sbjct: 179 RLKDPVKMGPTVSPICLPGTSSDYNLMDGDL 209
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 14/107 (13%)
Query: 220 NYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS---GKMGTVVGWGRTSEGGSLATEAL 276
N+++DIAL++L+ PV +V PICLP + D + G +G + GWGRT E A
Sbjct: 170 NFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLK 228
Query: 277 EVQVPILSPGQCRAMKY-KPSR------ITPNMLCAGRGE--MDSCQ 314
++P+ +C+ +K KP+ TPNM+CAG GE MDSC+
Sbjct: 229 AARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCK 274
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM 395
G MG V G+G E +A + V++P+ +P C +R+ + NM CAG +
Sbjct: 282 GLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 339
Query: 396 --DSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
D+CQGDSGG + D R+ GIVSWG+GC R GY G YT+V Y+ W+K+ M++
Sbjct: 340 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEMEE 397
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+R VS +R + N+ DIALL+L V+ ++ PICLP D G MG V G+
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 290
Query: 263 GRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM--DSCQ 314
G E +A + V++P+ +P C +R+ + NM CAG + D+CQ
Sbjct: 291 GVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 345
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 17 CLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV 72
CL CG Q +I+GG+ + +PW G G +L+ + ++LTAAH +
Sbjct: 141 CLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTL 198
Query: 73 -----RRLKRSKIRIVLGDYD-QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLK 126
+ + + LG + + + P +R VS +R + N+ DIALL+
Sbjct: 199 YPKEHEAQSNASLDVFLGHTNVEELMKLGNHP--IRRVSVHPDYRQDESYNFEGDIALLE 256
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTV 151
L V+ ++ PICLP + ++ +
Sbjct: 257 LENSVTLGPNLLPICLPDNDTFYDL 281
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 362 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVS 421
+ +P+LS C+ KY ++I M+CAG + SC GDSGGPL+ G + LVGIVS
Sbjct: 9 QASLPLLSNTNCK--KYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVS 66
Query: 422 WGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
WG PGVY RV ++WV++ +
Sbjct: 67 WGSSTCSTSTPGVYARVTALVNWVQQTL 94
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM 395
G MG V G+G E +A + V++P+ +P C +R+ + NM CAG +
Sbjct: 125 GLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 182
Query: 396 --DSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
D+CQGDSGG + D R+ GIVSWG+GC R GY G YT+V Y+ W+K+ M++
Sbjct: 183 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEMEE 240
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+R VS +R + N+ DIALL+L V+ ++ PICLP D G MG V G+
Sbjct: 74 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 133
Query: 263 GRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM--DSCQ 314
G E +A + V++P+ +P C +R+ + NM CAG + D+CQ
Sbjct: 134 GVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 188
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-----RRLKRSKIRIVL 84
I+GG+ + +PW G G +L+ + ++LTAAH + + + + L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 85 GDYD-QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
G + + + P +R VS +R + N+ DIALL+L V+ ++ PICLP
Sbjct: 59 GHTNVEELMKLGNHP--IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP 116
Query: 144 PDSEYHTV 151
+ ++ +
Sbjct: 117 DNDTFYDL 124
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 362 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVS 421
+ +P+LS C+ KY ++I M+CAG + SC GDSGGPL+ G + LVGIVS
Sbjct: 8 QASLPLLSNTNCK--KYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVS 65
Query: 422 WGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
WG PGVY RV ++WV++ +
Sbjct: 66 WGSSTCSTSTPGVYARVTALVNWVQQTL 93
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 293 YKPSRITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSE 352
Y+P I ++L + + A P L + + D+ P G + V GWG +
Sbjct: 81 YQPDTIDHDLL------LLQLSEKATLGPAVRPLPWQRVDRDVAP-GTLCDVAGWGIVNH 133
Query: 353 GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVG 412
G V +P+L C + IT ++CA DSC+GDSGGPL+ V
Sbjct: 134 AGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGGV- 192
Query: 413 RYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWV 445
L G+VSWG CG PG+YTRV Y +W+
Sbjct: 193 ---LEGVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
S EP+ + V V H + + +HD+ LL+L + + +VRP LP
Sbjct: 61 S----QPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP--LPWQRVD 114
Query: 149 HTVVKGTM 156
V GT+
Sbjct: 115 RDVAPGTL 122
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + + +HD+ LL+L + + +V
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D G + V GWG + G V +P+L C +
Sbjct: 106 RP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA 163
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT ++CA DSC+
Sbjct: 164 ITERLMCAESNRRDSCK 180
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM 395
G MG V G+G E +A + V++P+ +P C +R+ + NM CAG +
Sbjct: 214 GLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 396 --DSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
D+CQGDSGG + D R+ GIVSWG+GC R GY G YT+V Y+ W+K+ M++
Sbjct: 272 KQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEMEE 329
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+R VS +R + N+ DIALL+L V+ ++ PICLP D G MG V G+
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 222
Query: 263 GRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM--DSCQ 314
G E +A + V++P+ +P C +R+ + NM CAG + D+CQ
Sbjct: 223 GVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 277
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 17 CLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV 72
CL CG Q RI+GG+ + +PW G G +L+ + ++LTAAH +
Sbjct: 73 CLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTL 130
Query: 73 -----RRLKRSKIRIVLGDYD-QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLK 126
+ + + LG + + + P +R VS +R + N+ DIALL+
Sbjct: 131 YPKEHEAQSNASLDVFLGHTNVEELMKLGNHP--IRRVSVHPDYRQDESYNFEGDIALLE 188
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTV 151
L V+ ++ PICLP + ++ +
Sbjct: 189 LENSVTLGPNLLPICLPDNDTFYDL 213
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + +P G TV GWG T S + ++ + V V ++SP C + YK + +MLC
Sbjct: 104 LPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV-YK-DLLENSMLC 161
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVK 446
AG + ++C GDSGGPL+ R L G+VSWG CG+P PGVYT+V ++ W+
Sbjct: 162 AGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWIN 217
Query: 447 RNMK 450
MK
Sbjct: 218 DTMK 221
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ G P +PW L+ HCG L+NE +VLTAAHC K ++ + LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC----KMNEYTVHLG---- 52
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S T ++A S RH + + +D+ L+KL + V+ + LP E
Sbjct: 53 SDTLGDRRAQRIKASKSF-RHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE 109
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWG-RT 265
S RH + + +D+ L+KL + V+ + LP +P G TV GWG T
Sbjct: 66 ASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP-SRCEPPGTTCTVSGWGTTT 124
Query: 266 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 306
S + ++ + V V ++SP C + YK + +MLCAG
Sbjct: 125 SPDVTFPSDLMCVDVKLISPQDCTKV-YK-DLLENSMLCAG 163
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRT-SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + +P G TV GWG T S + ++ + V V ++SP C + YK + +MLC
Sbjct: 104 LPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV-YK-DLLENSMLC 161
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVK 446
AG + ++C GDSGGPL+ R L G+VSWG CG+P PGVYT+V ++ W+
Sbjct: 162 AGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWIN 217
Query: 447 RNMK 450
MK
Sbjct: 218 DTMK 221
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ G P +PW L+ HCG L+NE +VLTAAHC K ++ + LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC----KMNEYTVHLG---- 52
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S T ++A S RH + + +D+ L+KL + V+ + LP E
Sbjct: 53 SDTLGDRRAQRIKASKSF-RHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE 109
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWG-RT 265
S RH + + +D+ L+KL + V+ + LP +P G TV GWG T
Sbjct: 66 ASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP-SRCEPPGTTCTVSGWGTTT 124
Query: 266 SEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 306
S + ++ + V V ++SP C + YK + +MLCAG
Sbjct: 125 SPDVTFPSDLMCVDVKLISPQDCTKV-YK-DLLENSMLCAG 163
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM 395
G MG V G+G E +A + V++P+ +P C +R+ + NM CAG +
Sbjct: 214 GLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSL 271
Query: 396 --DSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+CQGD+GG + D R+ GIVSWG+GC R GY G YT+V Y+ W+K+ M+
Sbjct: 272 KQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEME 328
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 204 MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP-DNIDPSGKMGTVVGW 262
+R VS +R + N+ DIALL+L V+ ++ PICLP D G MG V G+
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 222
Query: 263 GRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI---TPNMLCAGRGEM--DSCQ 314
G E +A + V++P+ +P C +R+ + NM CAG + D+CQ
Sbjct: 223 GVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 277
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 17 CLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV 72
CL CG Q RI+GG+ + +PW G G +L+ + ++LTAAH +
Sbjct: 73 CLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTL 130
Query: 73 -----RRLKRSKIRIVLGDYD-QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLK 126
+ + + LG + + + P +R VS +R + N+ DIALL+
Sbjct: 131 YPKEHEAQSNASLDVFLGHTNVEELMKLGNHP--IRRVSVHPDYRQDESYNFEGDIALLE 188
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTV 151
L V+ ++ PICLP + ++ +
Sbjct: 189 LENSVTLGPNLLPICLPDNDTFYDL 213
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 362 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVS 421
+ +PI+S C+ K S+IT M CAG +DSC GDSGGPL+ G + L GIVS
Sbjct: 11 QAALPIVSEADCK--KSWGSKITDVMTCAGASGVDSCMGDSGGPLVCQKDGVWTLAGIVS 68
Query: 422 WGVGCGRPGYPGVYTRVNRYLSWVKR 447
WG G P VY+RV + WV++
Sbjct: 69 WGSGVCSTSTPAVYSRVTALMPWVQQ 94
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 277 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSC 313
+ +PI+S C+ K S+IT M CAG +DSC
Sbjct: 11 QAALPIVSEADCK--KSWGSKITDVMTCAGASGVDSC 45
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 13/121 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH----CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +PW L YD + CG +L+++ +VLTAAHC+ + R+VLG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSR--TYRVVLG 58
Query: 86 DYDQSVTTETAEP-TMMRAVSSIVRHRHFDVNNYN--HDIALLKLRKPVSFTKSVRPICL 142
+ S T EP ++ VS +V H+ ++ N + +DIALLKL PVS T ++ CL
Sbjct: 59 RHSLS----TNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCL 114
Query: 143 P 143
P
Sbjct: 115 P 115
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 335 IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA-GRG 393
I P+ + V GWGR G+ + Q+ ++ C + S + NM+CA G G
Sbjct: 120 ILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDG 179
Query: 394 EMDSCQGDSGGPLIINDV-GRYELVGIVSWG--VGCGRPGYPGVYTRVNRYLSWVK 446
+ SC GDSGGPL G++++ GIVS+G +GC P V+TRV+ Y+ W+
Sbjct: 180 IISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWIN 235
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 180 SSKIRIVLGDYDQSVTTETAEP-TMMRAVSSIVRHRHFDVNNYNH--DIALLKLRKPVSF 236
S R+VLG + S T EP ++ VS +V H+ ++ N ++ DIALLKL PVS
Sbjct: 50 SRTYRVVLGRHSLS----TNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSL 105
Query: 237 TKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
T ++ CLP I P+ + V GWGR G+ + Q+ ++ C +
Sbjct: 106 TDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWG 165
Query: 296 SRITPNMLCA-GRGEMDSCQ 314
S + NM+CA G G + SC
Sbjct: 166 STVKTNMICAGGDGIISSCN 185
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 346 GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGDS 402
GWG + T+ L V + +L C K ++T MLCAG G D+C+GDS
Sbjct: 132 GWGSITPTKFQFTDDLYCVNLKLLPNEDCA--KAHIEKVTDAMLCAGEMDGGKDTCKGDS 189
Query: 403 GGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNM 449
GGPLI + V L GI SWG CG P PGVYT++N++ SW+K M
Sbjct: 190 GGPLICDGV----LQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N PW + + CG L++ ++VLTAAHC ++ LG +
Sbjct: 1 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCY----DDNYKVWLGKNNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVSFTKSVR 138
+A+ R VS + H F+++ +Y++D+ LL+L KP T +V+
Sbjct: 57 FKDEPSAQ---HRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVK 113
Query: 139 PICLP 143
PI LP
Sbjct: 114 PITLP 118
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 207 VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS-GKMGTVVGWGRT 265
+S + +H F +Y++D+ LL+L KP T +V+PI LP + +P G GWG
Sbjct: 79 MSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTE--EPKLGSTCLASGWGSI 136
Query: 266 SEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQD 315
+ T+ L V + +L C K ++T MLCA GEMD +D
Sbjct: 137 TPTKFQFTDDLYCVNLKLLPNEDCA--KAHIEKVTDAMLCA--GEMDGGKD 183
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 333 TDIDPSGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPN 386
T + +G G V GWG E + ++ V +PI+ C+A RIT N
Sbjct: 127 TSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTR--IRITDN 184
Query: 387 MLCAG-------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTR 437
M CAG RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT
Sbjct: 185 MFCAGFKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTH 242
Query: 438 VNRYLSWVKR 447
V R +W+++
Sbjct: 243 VFRLKAWIQK 252
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 55 CGASLINEDYVLTAAHCV------RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIV 108
CGASLI++ +VLTAAHC+ + + + + +G + ++ E M + I
Sbjct: 28 CGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIY 85
Query: 109 RHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAF 167
H ++ N + DIALLKL+KPV F+ + P+CLP V +R + V +
Sbjct: 86 VHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ----TVTSLLRAGYKGRVTGW 141
Query: 168 GTQRD 172
G R+
Sbjct: 142 GNLRE 146
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIALLKL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIYVHPRYNWRENLDRDIALLKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALE------VQVPIL 283
V F+ + P+CLP S G G V GWG E + ++ V +PI+
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+A RIT NM CAG
Sbjct: 169 ERPVCKASTR--IRITDNMFCAG 189
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
S I P+ + GWG+TS GG L+ + +P + C + + S + M+CAG
Sbjct: 117 SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG 176
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G C GDSGGPL G Y + G+ S+ GC P V+TRV+ Y+SW+ M
Sbjct: 177 GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGGR N +PW L Y +H CG SLI + +V+TAAHCV + R+VLG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSAR--TWRVVLG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVRPICLP 143
+++ + T E E M V+S+ H ++ ++ +DIALL+L S +V+ LP
Sbjct: 59 EHNLN-TNEGKEQIM--TVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALP 115
Query: 144 PDSE 147
P ++
Sbjct: 116 PSNQ 119
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVR 241
R+VLG+++ + T E E M V+S+ H ++ ++ +DIALL+L S +V+
Sbjct: 54 RVVLGEHNLN-TNEGKEQIM--TVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110
Query: 242 PICLPPDN-IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
LPP N I P+ + GWG+TS GG L+ + +P + C + + S +
Sbjct: 111 LAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170
Query: 301 NMLCAGRGEMDSCQ 314
M+CAG G C
Sbjct: 171 TMVCAGGGANSGCN 184
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG------ 391
+G G V GWG E G + + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKEKGQPSVLQV-VNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEG 188
Query: 392 -RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R W+++
Sbjct: 189 KRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
V+F+ + P+CLP S G G V GWG E G + + V +PI+ C+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSVLQV-VNLPIVERPVCK 167
Query: 290 AMKYKPSRITPNMLCAG 306
RIT NM CAG
Sbjct: 168 DSTR--IRITDNMFCAG 182
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 321 PTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 380
P L + + D++P G + V GWG S G V +P+L C +
Sbjct: 103 PAVRPLPWQRVDRDVEP-GTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHD 161
Query: 381 SRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVN 439
IT M+CA DSC+GDSGGPL+ V L G+V+ G CG PG+YTRV
Sbjct: 162 GAITQRMMCAESNRRDSCKGDSGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVA 217
Query: 440 RYLSWV 445
Y +W+
Sbjct: 218 SYAAWI 223
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S EP+ + V V H + +HD+ LL+L + + +VRP+
Sbjct: 61 S----QPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPL 108
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + +HD+ LL+L + + +V
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNIDPSGKMGT---VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D + GT V GWG S G V +P+L C +
Sbjct: 106 RP--LPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGA 163
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT M+CA DSC+
Sbjct: 164 ITQRMMCAESNRRDSCK 180
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG------ 391
+G G V GWG E G + + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETGQPSVLQV-VNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEG 188
Query: 392 -RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R W+++
Sbjct: 189 KRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTAYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTAYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
V+F+ + P+CLP S G G V GWG E G + + V +PI+ C+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQV-VNLPIVERPVCK 167
Query: 290 AMKYKPSRITPNMLCAG 306
RIT NM CAG
Sbjct: 168 DSTR--IRITDNMFCAG 182
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 19/117 (16%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVP------ILSPGQCRAMKYKPSRITPNMLCAG- 391
G + ++GWG+T + T+ + VP IL CR Y ++ LCAG
Sbjct: 115 GSVCRIMGWGKT-----IPTKEIYPDVPHCANINILDHAVCRTA-YSWRQVANTTLCAGI 168
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVK 446
+G D+C DSGGPLI N + GIVSWG CG+PG PGVYT+V YL W+K
Sbjct: 169 LQGGRDTCHFDSGGPLICNGI----FQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIK 221
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+ GG +N++ + L F CG +LIN+D+V+TAAHC + +++ G + +
Sbjct: 1 VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHC----DSNNFQLLFGVHSK 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
+ E E T +R D + + DI L+KL VS ++ +
Sbjct: 57 KILNED-EQTRDPKEKFFCPNRKKD-DEVDKDIMLIKLDSSVSNSEHI 102
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG------ 391
+G G V GWG E G + + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETGQPSVLQV-VNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEG 188
Query: 392 -RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R W+++
Sbjct: 189 KRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
V+F+ + P+CLP S G G V GWG E G + + V +PI+ C+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSVLQV-VNLPIVERPVCK 167
Query: 290 AMKYKPSRITPNMLCAG 306
RIT NM CAG
Sbjct: 168 DSTR--IRITDNMFCAG 182
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG------ 391
+G G V GWG E + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEG 189
Query: 392 -RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R W+++
Sbjct: 190 KRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 246
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
V+F+ + P+CLP S G G V GWG E + V +PI+ C+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCK 168
Query: 290 AMKYKPSRITPNMLCAG 306
RIT NM CAG
Sbjct: 169 DSTR--IRITDNMFCAG 183
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G PG YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP--SRITPNMLCAGRGE- 394
G M V GWG+ +E+++PI+ C+ Y P ++T +M+CAG E
Sbjct: 287 EGAMVIVSGWGKQFLQ-RFPETLMEIEIPIVDHSTCQKA-YAPLKKKVTRDMICAGEKEG 344
Query: 395 -MDSCQGDSGGPLII--NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
D+C GDSGGP++ + G++ LVG VSWG CG+ GVY+ ++ W++R
Sbjct: 345 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQR 400
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 16 TCLLECGVTNQE----VRIVGGRPTGVNKYPWVARLVY-DGNFHCGASLINEDYVLTAAH 70
TCL CG+ +I GRP PW+A L + +G CG SL+ +++TAAH
Sbjct: 138 TCLPVCGLPKFSRKLMAQIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAH 197
Query: 71 CVRR--------------LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN 116
C+ + L S +I+LG + + + E + V H +D N
Sbjct: 198 CLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPN 254
Query: 117 NYNHDIALLKLRKPVSFTKSVRPICLP--PDSEYHTVV 152
+ +D+AL++L + V PICLP P E V+
Sbjct: 255 TFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVI 292
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 169 TQRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALL 228
T RD SD+ L S +I+LG + + + E + V H +D N + +D+AL+
Sbjct: 209 TLRD-SDL-LSPSDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPNTFENDVALV 263
Query: 229 KLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC 288
+L + V PICL P+ G M V GWG+ +E+++PI+ C
Sbjct: 264 ELLESPVLNAFVMPICL-PEGPQQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTC 321
Query: 289 RAMKYKP--SRITPNMLCAGRGE--MDSC 313
+ Y P ++T +M+CAG E D+C
Sbjct: 322 QK-AYAPLKKKVTRDMICAGEKEGGKDAC 349
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E + + ++ V +P++ C+A RIT NM CAG
Sbjct: 181 AGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 238
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 239 YKPGEGKRG--DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 296
Query: 443 SWVKR 447
W+++
Sbjct: 297 KWIQK 301
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 27 EVRIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRS 78
E RIV G+ V PW L CGASLI++ +VLTAAHC+ +
Sbjct: 47 EGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVD 106
Query: 79 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSV 137
+ + +G + ++ E M + I H ++ N + DIALLKL++P+ + +
Sbjct: 107 DLLVRIGKHSRTRYERKVEKISM--LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYI 164
Query: 138 RPICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD 172
P+CLP ++ + R V +G +R+
Sbjct: 165 HPVCLPDKQTAAKLLHAGFKGR----VTGWGNRRE 195
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP----SGKMGTVVGWGRTSEGGSLATE 274
N + DIALLKL++P+ + + P+CLP +G G V GWG E + +
Sbjct: 143 ENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVA 202
Query: 275 ALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 306
++ V +P++ C+A RIT NM CAG
Sbjct: 203 EVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 238
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA-GRGEMDSCQGDS 402
V GWGR G +A + + P++ C + + R+ M+CA G G + +C GDS
Sbjct: 128 VTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGGDGVISACNGDS 187
Query: 403 GGPLIIN-DVGRYELVGIVSWGV--GCGRPGYPGVYTRVNRYLSWVKRNMK 450
GGPL + G +E+ GIVS+G GC P VYTRV+ Y+ W+ M+
Sbjct: 188 GGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQ 238
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN----FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG + +PW L Y N CG +LI ++VLTAAHC+ + R+ +G
Sbjct: 1 VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTR--TYRVAVG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ V E E ++ V +I H+ ++ +DIAL+KL + V + +++ CLP
Sbjct: 59 KNNLEV--EDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLP 114
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 243
R+ +G + V E E ++ V +I H+ ++ +DIAL+KL + V + +++
Sbjct: 54 RVAVGKNNLEV--EDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVA 111
Query: 244 CLPP-DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM 302
CLP D++ P V GWGR G +A + + P++ C + + R+ M
Sbjct: 112 CLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTM 171
Query: 303 LCA-GRGEMDSCQ 314
+CA G G + +C
Sbjct: 172 VCAGGDGVISACN 184
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 9/106 (8%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI-TPNMLCAGR--GEMDSCQG 400
V GWGR + + + +V ++S K+ +R M CAG G +D+C+G
Sbjct: 451 VSGWGREKDNERVFSLQWG-EVKLIS----NCSKFYGNRFYEKEMECAGTYDGSIDACKG 505
Query: 401 DSGGPLIINDVGRYELV-GIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
DSGGPL+ D V G+VSWG CG+P +PGVYT+V Y W+
Sbjct: 506 DSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWI 551
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 19 LECGVTNQ----EVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR 74
L CGV N+ RIVGG+ + PW + CG I ++LTAAHC+R
Sbjct: 307 LSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRA 366
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRA----VSSIVRHRHFDVNNYNHDIALLKL--- 127
K + +I + + P + R V I+ H +++ Y +DIAL+++
Sbjct: 367 SKTHRYQI------WTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKD 420
Query: 128 --RKPVSFTKSVRPICLP 143
+K +S+ P C+P
Sbjct: 421 GNKKDCELPRSI-PACVP 437
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 333 TDIDPSGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPN 386
T + +G G V GWG E + ++ V +PI+ C+A RIT N
Sbjct: 127 TSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTR--IRITDN 184
Query: 387 MLCAG-------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTR 437
M CAG RG D+C+GD+GGP ++ R+ +GIVSWG GC R G G YT
Sbjct: 185 MFCAGFKVNDTKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTH 242
Query: 438 VNRYLSWVKR 447
V R W+++
Sbjct: 243 VFRLKRWIQK 252
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 55 CGASLINEDYVLTAAHCV------RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIV 108
CGASLI++ +VLTAAHC+ + + + + +G + ++ E M + I
Sbjct: 28 CGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIY 85
Query: 109 RHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAF 167
H ++ N + DIALLKL+KPV F+ + P+CLP V +R + V +
Sbjct: 86 VHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ----TVTSLLRAGYKGRVTGW 141
Query: 168 GTQRD 172
G R+
Sbjct: 142 GNLRE 146
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIALLKL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIYVHPRYNWRENLDRDIALLKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALE------VQVPIL 283
V F+ + P+CLP S G G V GWG E + ++ V +PI+
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+A RIT NM CAG
Sbjct: 169 ERPVCKASTR--IRITDNMFCAG 189
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 73.2 bits (178), Expect = 3e-13, Method: Composition-based stats.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IV G +PW L FH CG SLINE++V+TAAHC + S + +V G++D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFD 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
Q ++E + + V ++ +NN DI LLKL SF+++V +CLP S+
Sbjct: 58 QGSSSEKIQKLKIAKVFKNSKYNSLTINN---DITLLKLSTAASFSQTVSAVCLPSASD 113
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
V++ +V G++DQ ++E + + V ++ +NN DI LLKL SF++
Sbjct: 45 VTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINN---DITLLKLSTAASFSQ 101
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRT 265
+V +CLP + D +G GWG T
Sbjct: 102 TVSAVCLPSASDDFAAGTTCVTTGWGLT 129
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP--SRITPNMLCAGRGE- 394
G M V GWG+ +E+++PI+ C+ Y P ++T +M+CAG E
Sbjct: 132 EGAMVIVSGWGKQFLQ-RFPETLMEIEIPIVDHSTCQK-AYAPLKKKVTRDMICAGEKEG 189
Query: 395 -MDSCQGDSGGPLII--NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
D+C GDSGGP++ + G++ LVG VSWG CG+ GVY+ ++ W++R
Sbjct: 190 GKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQR 245
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVY-DGNFHCGASLINEDYVLTAAHCVRR-------------- 74
I GRP PW+A L + +G CG SL+ +++TAAHC+ +
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 134
L S +I+LG + + + E + V H +D N + +D+AL++L +
Sbjct: 61 LSPSDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPNTFENDVALVELLESPVLN 117
Query: 135 KSVRPICLP--PDSEYHTVV 152
V PICLP P E V+
Sbjct: 118 AFVMPICLPEGPQQEGAMVI 137
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 169 TQRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALL 228
T RD SD+ L S +I+LG + + + E + V H +D N + +D+AL+
Sbjct: 54 TLRD-SDL-LSPSDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPNTFENDVALV 108
Query: 229 KLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC 288
+L + V PICL P+ G M V GWG+ +E+++PI+ C
Sbjct: 109 ELLESPVLNAFVMPICL-PEGPQQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTC 166
Query: 289 RAMKYKP--SRITPNMLCAGRGE--MDSC 313
+ Y P ++T +M+CAG E D+C
Sbjct: 167 QK-AYAPLKKKVTRDMICAGEKEGGKDAC 194
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E + + ++ V +P++ C+A RIT NM CAG
Sbjct: 132 AGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPGEGKRG--DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G+ V PW L CGASLI++ +VLTAAHC+ + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIALLKL++P+ + + P+
Sbjct: 61 VRIGKHSRTRYERKVEKISM--LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD 172
CLP ++ + R V +G +R+
Sbjct: 119 CLPDKQTAAKLLHAGFKGR----VTGWGNRRE 146
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP----SGKMGTVVGWGRTSEGGSLATE 274
N + DIALLKL++P+ + + P+CLP +G G V GWG E + +
Sbjct: 94 ENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVA 153
Query: 275 ALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 306
++ V +P++ C+A RIT NM CAG
Sbjct: 154 EVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 189
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 64/125 (51%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E + + ++ V +P++ C+A RIT NM CAG
Sbjct: 132 AGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPGEGKRG--DACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G+ V PW L CGASLI++ +VLTAAHC+ + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIALLKL++P+ + + P+
Sbjct: 61 VRIGKHSRTRYERKVEKISM--LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD 172
CLP ++ + R V +G +R+
Sbjct: 119 CLPDKQTAAKLLHAGFKGR----VTGWGNRRE 146
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDP----SGKMGTVVGWGRTSEGGSLATE 274
N + DIALLKL++P+ + + P+CLP +G G V GWG E + +
Sbjct: 94 ENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVA 153
Query: 275 ALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 306
++ V +P++ C+A RIT NM CAG
Sbjct: 154 EVQPSVLQVVNLPLVERPVCKASTR--IRITDNMFCAG 189
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG-RGEMDSCQGDS 402
V GWGR G +A E + P++ C + + + M+CAG G + +C GDS
Sbjct: 141 VTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACNGDS 200
Query: 403 GGPLIINDVGRYELVGIVSWGVG--CGRPGYPGVYTRVNRYLSWVKRNMK 450
GGPL G++++ GIVS+G G C P V+TRV+ Y+ W+ + ++
Sbjct: 201 GGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ 250
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 25 NQEVRIVGGRPTGVNKYPWVARLVY--DGNFH--CGASLINEDYVLTAAHCVRRLKRSKI 80
N R+VGG + +PW L Y D + CG +LI ++VLTAAHC+
Sbjct: 9 NLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCIS--NTLTY 66
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
R+ LG + V E ++ V +I H ++ +DIAL+KL + V +++
Sbjct: 67 RVALGKNNLEVEDEAG--SLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVA 124
Query: 141 CLPPD-----SEYHTVVKGTMRCRQRAAVLA 166
CLP + +Y V G R + A
Sbjct: 125 CLPSEGSLLPQDYPCFVTGWGRLYTNGPIAA 155
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 184 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 243
R+ LG + V E ++ V +I H ++ +DIAL+KL + V +++
Sbjct: 67 RVALGKNNLEVEDEAG--SLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVA 124
Query: 244 CLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM 302
CLP + ++ P V GWGR G +A E + P++ C + + + M
Sbjct: 125 CLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETM 184
Query: 303 LCA-GRGEMDSC 313
+CA G G + +C
Sbjct: 185 VCAGGDGVISAC 196
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 321 PTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 380
P L + + D+ P G + V GWG + G V +P+L C +
Sbjct: 103 PAVRPLPWQRVDRDVAP-GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD 161
Query: 381 SRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVN 439
IT ++CA DSC+GDSGGPL+ V L G+V+ G CG PG+YTRV
Sbjct: 162 GAITERLMCAESNRRDSCKGDSGGPLVCGGV----LEGVVTSGSAVCGNRKKPGIYTRVA 217
Query: 440 RYLSWV 445
Y +W+
Sbjct: 218 SYAAWI 223
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S EP+ + V V H + +HD+ LL+L + + +VRP+
Sbjct: 61 S----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 108
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + +HD+ LL+L + + +V
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D G + V GWG + G V +P+L C +
Sbjct: 106 RP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA 163
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT ++CA DSC+
Sbjct: 164 ITERLMCAESNRRDSCK 180
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E + ++ V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD 172
CLP ++++ + R V +G R+
Sbjct: 119 CLPDRETAASLLQAGYKGR----VTGWGNLRE 146
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALE------VQVPIL 283
V+F+ + P+CLP S G G V GWG E + ++ V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 328 FHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR--IT 384
H S SG V GWG T ++ L EV V +LS C + Y IT
Sbjct: 111 LHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFIT 170
Query: 385 PNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRV-NRY 441
+M+CAG +G+ DSC+GD+GGPLI V IVS G CG PG+YT + +Y
Sbjct: 171 KDMVCAGDAKGQKDSCKGDAGGPLICKGV----FHAIVSGGHECGVATKPGIYTLLTKKY 226
Query: 442 LSWVKRNM 449
+W+K N+
Sbjct: 227 QTWIKSNL 234
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 28 VRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKI-RIVLGD 86
+ I+GG+ + P++A + Y G+ CG LI+ +VLTAAHC R + + +VLG
Sbjct: 1 MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGA 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+ S E ++ T+ + + + ++DI L+KL+ K V+ +
Sbjct: 61 HSLS-KNEASKQTL--EIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKML------ 111
Query: 147 EYHTVVKGTMRCRQRAAVLAFG 168
H K ++R + V +G
Sbjct: 112 --HIRSKTSLRSGTKCKVTGWG 131
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+VLG + S E ++ T+ + + + ++DI L+KL+ K V+ +
Sbjct: 56 VVLGAHSLS-KNEASKQTL--EIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLH 112
Query: 245 LPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR--ITPN 301
+ SG V GWG T ++ L EV V +LS C + Y IT +
Sbjct: 113 IRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKD 172
Query: 302 MLCAG--RGEMDSCQ 314
M+CAG +G+ DSC+
Sbjct: 173 MVCAGDAKGQKDSCK 187
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+CQGDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 24/158 (15%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG-------RGEMDSCQ 314
C+ RIT NM CAG RG D+CQ
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAGYKPDEGKRG--DACQ 202
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 321 PTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 380
P L + + D+ P G + V GWG + G V +P+L C +
Sbjct: 103 PAVRPLPWQRVDRDVAP-GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD 161
Query: 381 SRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVN 439
IT ++CA DSC+GDSGGPL+ V L G+V+ G CG PG+YTRV
Sbjct: 162 GAITERLMCAESNRRDSCKGDSGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVA 217
Query: 440 RYLSWV 445
Y +W+
Sbjct: 218 SYAAWI 223
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S EP+ + V V H + +HD+ LL+L + + +VRP+
Sbjct: 61 S----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 108
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + +HD+ LL+L + + +V
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D G + V GWG + G V +P+L C +
Sbjct: 106 RP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA 163
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT ++CA DSC+
Sbjct: 164 ITERLMCAESNRRDSCK 180
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 321 PTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 380
P L + + D+ P G + V GWG + G V +P+L C +
Sbjct: 110 PAVRPLPWQRVDRDVAP-GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD 168
Query: 381 SRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVN 439
IT ++CA DSC+GDSGGPL+ V L G+V+ G CG PG+YTRV
Sbjct: 169 GAITERLMCAESNRRDSCKGDSGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVA 224
Query: 440 RYLSWV 445
Y +W+
Sbjct: 225 SYAAWI 230
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
RI+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 7 RILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS 66
Query: 89 QSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S EP+ + V V H + +HD+ LL+L + + +VRP+
Sbjct: 67 LS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 115
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + +HD+ LL+L + + +V
Sbjct: 57 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 112
Query: 241 RPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D G + V GWG + G V +P+L C +
Sbjct: 113 RP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA 170
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT ++CA DSC+
Sbjct: 171 ITERLMCAESNRRDSCK 187
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 FKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLC 389
+S+ +G V GWG T + L+ + + +LS +C P +I M C
Sbjct: 108 VSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAY--PRQIDDTMFC 165
Query: 390 AG-RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKR 447
AG + DSCQGDSGGP++ N L G+VSWG C RP PGVYT + ++ W++
Sbjct: 166 AGDKAGRDSCQGDSGGPVVCNG----SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQE 221
Query: 448 NMK 450
++
Sbjct: 222 TIQ 224
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN-FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
I+ G ++ PW A L+ N +CGA L++ ++LTAAHC +++ R+ LG Y
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKV----FRVRLGHYS 56
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S E+ + M + V SI H + +++D+ L+KL + + TK VRPI
Sbjct: 57 LSPVYESGQ-QMFQGVKSI-PHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPI 106
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
R+ LG Y S E+ + M + V SI H + +++D+ L+KL + + TK VRP
Sbjct: 48 FRVRLGHYSLSPVYESGQ-QMFQGVKSIP-HPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105
Query: 243 ICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPN 301
I + + +G V GWG T + L+ + + +LS +C P +I
Sbjct: 106 INV-SSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA--YPRQIDDT 162
Query: 302 MLCAG-RGEMDSCQ 314
M CAG + DSCQ
Sbjct: 163 MFCAGDKAGRDSCQ 176
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 219
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 220 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 277
Query: 443 SWVKR 447
W+++
Sbjct: 278 KWIQK 282
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 90 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 147
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 148 VCLPDRETAASLLQAGYKGR 167
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 81 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 138
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 139 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 198
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 199 ERPVCKDSTR--IRITDNMFCAG 219
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 219
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 220 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 277
Query: 443 SWVKR 447
W+++
Sbjct: 278 KWIQK 282
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 90 LVRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 147
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 148 VCLPDRETAASLLQAGYKGR 167
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 81 DKNFTENDLLVRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 138
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 139 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 198
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 199 ERPVCKDSTR--IRITDNMFCAG 219
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 161 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 218
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 219 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 276
Query: 443 SWVKR 447
W+++
Sbjct: 277 KWIQK 281
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 29 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 88
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 89 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 146
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 147 VCLPDRETAASLLQAGYKGR 166
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 80 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 137
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 138 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 197
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 198 ERPVCKDSTR--IRITDNMFCAG 218
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 219
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 220 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 277
Query: 443 SWVKR 447
W+++
Sbjct: 278 KWIQK 282
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 90 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 147
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 148 VCLPDRETAASLLQAGYKGR 167
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 81 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 138
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 139 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 198
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 199 ERPVCKDSTR--IRITDNMFCAG 219
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 168 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 225
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 226 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 283
Query: 443 SWVKR 447
W+++
Sbjct: 284 KWIQK 288
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 95
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 96 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 153
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 154 VCLPDRETAASLLQAGYKGR 173
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 87 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 144
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 145 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 204
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 205 ERPVCKDSTR--IRITDNMFCAG 225
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 219
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 220 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 277
Query: 443 SWVKR 447
W+++
Sbjct: 278 KWIQK 282
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 89
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 90 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 147
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 148 VCLPDRETAASLLQAGYKGR 167
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 81 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 138
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 139 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 198
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 199 ERPVCKDSTR--IRITDNMFCAG 219
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 41 YPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEPT 99
+PW L FH CG SLI+ED+V+TAAHC +K S + +V G++DQ E +
Sbjct: 9 WPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFDQGSDEENIQ-- 63
Query: 100 MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ ++ + ++ F++ +DI LLKL P F+++V +CLP
Sbjct: 64 -VLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLP 106
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+V G++DQ E + + ++ + ++ F++ +DI LLKL P F+++V +C
Sbjct: 48 VVAGEFDQGSDEENIQ---VLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVC 104
Query: 245 LPPDNID---PSGKMGTVVGWGRT 265
LP N+D P G + GWG+T
Sbjct: 105 LP--NVDDDFPPGTVCATTGWGKT 126
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 297 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 354
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 355 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 412
Query: 443 SWVKR 447
W+++
Sbjct: 413 KWIQK 417
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 224
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 225 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 282
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 283 VCLPDRETAASLLQAGYKGR 302
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 216 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 273
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 274 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 333
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 334 ERPVCKDSTR--IRITDNMFCAG 354
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 164 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 221
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 222 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 279
Query: 443 SWVKR 447
W+++
Sbjct: 280 KWIQK 284
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 91
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 92 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 149
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 150 VCLPDRETAASLLQAGYKGR 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 83 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 140
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 141 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 200
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 201 ERPVCKDSTR--IRITDNMFCAG 221
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 168 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 225
Query: 392 -------RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 226 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 283
Query: 443 SWVKR 447
W+++
Sbjct: 284 KWIQK 288
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 95
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 96 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 153
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 154 VCLPDRETAASLLQAGYKGR 173
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 87 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 144
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 145 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 204
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 205 ERPVCKDSTR--IRITDNMFCAG 225
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 164 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 221
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 222 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 279
Query: 443 SWVKR 447
W+++
Sbjct: 280 KWIQK 284
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 91
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 92 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 149
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 150 VCLPDRETAASLLQAGYKGR 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 83 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 140
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 141 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 200
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 201 ERPVCKDSTR--IRITDNMFCAG 221
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 326 LHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR---AMKYKPSR 382
LH D+ P G M V GWGRT S + EV++ I+ C + P
Sbjct: 105 LHLPKKGDDVKP-GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPV- 162
Query: 383 ITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV--GCGRPGYPGVYTRV 438
I NM+CAG RG DSC GDSG PL+ V R G+ S+G+ CG P PGVY +
Sbjct: 163 IGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFR----GVTSFGLENKCGDPRGPGVYILL 218
Query: 439 N-RYLSWVKRNMK 450
+ ++L+W+ +K
Sbjct: 219 SKKHLNWIIMTIK 231
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 237
++ + +++LG + S+T E EPT + V + +D D+ LL+L +
Sbjct: 44 LNKRSQVILGAH--SITRE--EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKIN 99
Query: 238 KSVRPICLPP--DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC---RAMK 292
K V + LP D++ P G M V GWGRT S + EV++ I+ C
Sbjct: 100 KYVTILHLPKKGDDVKP-GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYN 158
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
+ P I NM+CAG RG DSC
Sbjct: 159 FNPV-IGMNMVCAGSLRGGRDSCN 181
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG + P++ L D C +LI +D+VLTAAHC KRS+ ++LG +
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN-KRSQ--VILGAH-- 55
Query: 90 SVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
S+T E EPT + V + +D D+ LL+L + K V + LP +
Sbjct: 56 SITRE--EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD- 112
Query: 149 HTVVKGTM 156
V GTM
Sbjct: 113 -DVKPGTM 119
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFIENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYEANIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + +IAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + +IAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRNIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 321 PTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 380
P L + + D+ P G + V GWG + G V +P+L C +
Sbjct: 103 PAVRPLPWQRVDRDVAP-GTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD 161
Query: 381 SRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVN 439
IT ++CA DSC+GD+GGPL+ V L G+V+ G CG PG+YTRV
Sbjct: 162 GAITERLMCAESNRRDSCKGDAGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVA 217
Query: 440 RYLSWV 445
Y +W+
Sbjct: 218 SYAAWI 223
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
S EP+ + V V H + +HD+ LL+L + + +VRP+
Sbjct: 61 S----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 108
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 182 KIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S EP+ + V V H + +HD+ LL+L + + +V
Sbjct: 50 KVQVLLGAHSLS----QPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
RP LP +D G + V GWG + G V +P+L C +
Sbjct: 106 RP--LPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA 163
Query: 298 ITPNMLCAGRGEMDSCQ 314
IT ++CA DSC+
Sbjct: 164 ITERLMCAESNRRDSCK 180
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 181 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 238
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GD+GGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 239 YKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 296
Query: 443 SWVKR 447
W+++
Sbjct: 297 KWIQK 301
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 49 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 108
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 109 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 166
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 167 VCLPDRETAASLLQAGYKGR 186
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 100 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 157
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 158 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 217
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 218 ERPVCKDSTR--IRITDNMFCAG 238
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 163 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 220
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GD+GGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 221 YKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 278
Query: 443 SWVKR 447
W+++
Sbjct: 279 KWIQK 283
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 31 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 90
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 91 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 148
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 149 VCLPDRETAASLLQAGYKGR 168
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 82 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 139
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 140 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 199
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 200 ERPVCKDSTR--IRITDNMFCAG 220
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 336 DPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MKYKPSRITPNMLCAG-- 391
D +G + GWGRT +L + +P+++ QC A + + I N +C
Sbjct: 121 DYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDP 180
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSW----GVGCGRPGYPGVYTRVNRYLSWVKR 447
G +C GDSGGPL D G +VG+ SW G+G P YP VYTRV+ YL W+
Sbjct: 181 AGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Query: 448 N 448
N
Sbjct: 240 N 240
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 178 LVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVS 235
++ + IR++ G + QS T+ T V S H ++ +Y++DIA+L L +S
Sbjct: 49 VLPNNIRVIAGLWQQSDTSGT----QTANVDSYTMHENYGAGTASYSNDIAILHLATSIS 104
Query: 236 FTKSVRPICLPPDNI-DPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MK 292
+++ LP +N D +G + GWGRT +L + +P+++ QC A +
Sbjct: 105 LGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVG 164
Query: 293 YKPSRITPNMLC 304
+ I N +C
Sbjct: 165 VGGANIWDNHIC 176
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 30 IVGGRPTGVNKYPW-VARLVYDGNFH--CGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
++GG ++PW +++ G++ CGASL++ L+A+HCV + + IR++ G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFTKSVRPICLPP 144
+ QS T+ T V S H ++ +Y++DIA+L L +S +++ LP
Sbjct: 61 WQQSDTSG----TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA 116
Query: 145 DSE 147
++
Sbjct: 117 NNN 119
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 333 TDIDPSGKMGTVVGWGRTSEGGSLATEALE------VQVPILSPGQCRAMKYKPSRITPN 386
T + +G G V GWG E + ++ V +PI+ C+A RIT N
Sbjct: 127 TSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTR--IRITDN 184
Query: 387 MLCAG-------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTR 437
M CAG RG D+C+GDSGGP ++ R+ +GIVS G GC R G G YT
Sbjct: 185 MFCAGFKVNDTKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTH 242
Query: 438 VNRYLSWVKR 447
V R W+++
Sbjct: 243 VFRLKRWIQK 252
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 55 CGASLINEDYVLTAAHCV------RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIV 108
CGASLI++ +VLTAAHC+ + + + + +G + ++ E M + I
Sbjct: 28 CGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIY 85
Query: 109 RHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAF 167
H ++ N + DIALLKL+KPV F+ + P+CLP V +R + V +
Sbjct: 86 VHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCLPDKQ----TVTSLLRAGYKGRVTGW 141
Query: 168 GTQRD 172
G R+
Sbjct: 142 GNLRE 146
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIALLKL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNVEKISM--LEKIYVHPRYNWRENLDRDIALLKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALE------VQVPIL 283
V F+ + P+CLP S G G V GWG E + ++ V +PI+
Sbjct: 109 VPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+A RIT NM CAG
Sbjct: 169 ERPVCKASTR--IRITDNMFCAG 189
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 67/133 (50%), Gaps = 14/133 (10%)
Query: 326 LHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR---AMKYKPSR 382
LH D+ P G M V GWGRT S + EV + I+ C + P
Sbjct: 105 LHLPKKGDDVKP-GTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPV- 162
Query: 383 ITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV--GCGRPGYPGVYTRV 438
I NM+CAG RG DSC GDSG PL+ V R G+ S+G+ CG P PGVY +
Sbjct: 163 IGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFR----GVTSFGLENKCGDPRGPGVYILL 218
Query: 439 N-RYLSWVKRNMK 450
+ ++L+W+ +K
Sbjct: 219 SKKHLNWIIMTIK 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 237
++ + +++LG + S+T E EPT + V + +D D+ LL+L +
Sbjct: 44 LNKRSQVILGAH--SITRE--EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKIN 99
Query: 238 KSVRPICLPP--DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC---RAMK 292
K V + LP D++ P G M V GWGRT S + EV + I+ C
Sbjct: 100 KYVTILHLPKKGDDVKP-GTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYN 158
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
+ P I NM+CAG RG DSC
Sbjct: 159 FNPV-IGMNMVCAGSLRGGRDSCN 181
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG + P++ L D C +LI +D+VLTAAHC KRS+ ++LG +
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN-KRSQ--VILGAH-- 55
Query: 90 SVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
S+T E EPT + V + +D D+ LL+L + K V + LP +
Sbjct: 56 SITRE--EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD- 112
Query: 149 HTVVKGTM 156
V GTM
Sbjct: 113 -DVKPGTM 119
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG------ 391
+G G V GWG S+ V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKGQPSVLQV---VNLPIVERPVCKDSTR--IRITDNMFCAGYKPDEG 186
Query: 392 -RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R W+++
Sbjct: 187 KRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 243
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR 289
V+F+ + P+CLP S G G V GWG S+ V +PI+ C+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKGQPSVLQ---VVNLPIVERPVCK 165
Query: 290 AMKYKPSRITPNMLCAG 306
RIT NM CAG
Sbjct: 166 DSTR--IRITDNMFCAG 180
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 133 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 190
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GD+GGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 191 YKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 248
Query: 443 SWVKR 447
W+++
Sbjct: 249 KWIQK 253
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKI 80
RIV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 60
Query: 81 RIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRP 139
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P
Sbjct: 61 LVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 118
Query: 140 ICLPPDSEYHTVVKGTMRCR 159
+CLP ++++ + R
Sbjct: 119 VCLPDRETAASLLQAGYKGR 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 52 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 109
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 110 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 169
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 170 ERPVCKDSTR--IRITDNMFCAG 190
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GD+GGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA- 390
+ D D T+ GWG T GG+ E+++ + QC ++ R+ + +C
Sbjct: 110 TNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTL 166
Query: 391 -GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
RGE +C GDSGGPL+ N +GIVS+G C G P VYTRV+ ++SW+ N+
Sbjct: 167 TKRGE-GACHGDSGGPLVANGA----QIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANL 220
Query: 450 K 450
K
Sbjct: 221 K 221
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDYD 88
IVGG+ V KYP+ L G+ CGAS+++ + VLTAAHCV L +++++ +G
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVG--- 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
T +E + V V ++++D +D+AL+ L P+ F V+PI L + E
Sbjct: 58 ---TNYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE 113
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 195 TTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSG 254
T +E + V V ++++D +D+AL+ L P+ F V+PI L ++ D
Sbjct: 58 TNYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLES 117
Query: 255 KMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC--AGRGE 309
T+ GWG T GG+ E+++ + QC ++ R+ + +C RGE
Sbjct: 118 NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTLTKRGE 171
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 68.6 bits (166), Expect = 7e-12, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IV G +PW L FH CG SLI+ED+V+TAAHC +K S + +V G++D
Sbjct: 1 IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFD 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
Q E + + ++ + ++ F++ +DI LLKL P F+++V + LP
Sbjct: 58 QGSDEENIQ---VLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLP 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+V G++DQ E + + ++ + ++ F++ +DI LLKL P F+++V +
Sbjct: 51 VVAGEFDQGSDEENIQ---VLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVS 107
Query: 245 LPPDNID---PSGKMGTVVGWGRT 265
LP N+D P G + GWG+T
Sbjct: 108 LP--NVDDDFPPGTVCATTGWGKT 129
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
+VGG +N++P++ L + HC +LIN ++VLTAAHC RR IRI LG +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRR----NIRIKLGMH 56
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+++ E + + R + + N + DI L++LR+PV+++ + P+ LP S
Sbjct: 57 SKNIRNEDEQIRVPRGKYFCLNTKF--PNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS 113
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 388 LCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSW 444
LCAG +G D+C GDSGGPLI N E+ GIV+ G CG+ P VYT+V Y +W
Sbjct: 164 LCAGILKGGRDTCHGDSGGPLICNG----EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNW 219
Query: 445 VK 446
++
Sbjct: 220 IQ 221
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVR 241
IRI LG + +++ E + + R + + N + DI L++LR+PV+++ +
Sbjct: 48 NIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKF--PNGLDKDIMLIRLRRPVTYSTHIA 105
Query: 242 PICLPPDNIDPSGKMGTVVGWGRTS 266
P+ LP + G ++GWG+ S
Sbjct: 106 PVSLPSRS-RGVGSRCRIMGWGKIS 129
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG-RGEMDSCQGDS 402
+ GWG T G LA + +P + C + Y S + +M+CAG G CQGDS
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDS 188
Query: 403 GGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVK 446
GGPL G+Y + G+ S+ +GC P V+TRV+ Y+SW+
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN 234
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN----FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +P L Y CG +LI +++V+TAAHCV R R+V+G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVRPICLP 143
+++ + T + V IV H +++ ++ +DIALL+L + V+ V+ LP
Sbjct: 59 EHNLNQNNGTEQYV---GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG-RGEMDSCQGDS 402
+ GWG T G LA + +P + C + Y S + +M+CAG G CQGDS
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDS 188
Query: 403 GGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVK 446
GGPL G+Y + G+ S+ +GC P V+TRV+ Y+SW+
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN 234
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN----FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +P L Y CG +LI +++V+TAAHCV R R+V+G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVRPICLP 143
+++ + T + V IV H +++ ++ +DIALL+L + V+ V+ LP
Sbjct: 59 EHNLNQNDGTEQYV---GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG-RGEMDSCQGDS 402
+ GWG T G LA + +P + C + Y S + +M+CAG G CQGDS
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDS 188
Query: 403 GGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVK 446
GGPL G+Y + G+ S+ +GC P V+TRV+ Y+SW+
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN 234
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN----FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +P L Y CG +LI +++V+TAAHCV R R+V+G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVRPICLP 143
+++ + T + V IV H +++ ++ +DIALL+L + V+ V+ LP
Sbjct: 59 EHNLNQNNGTEQYV---GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG + P++A L GN CG +LI+ +VLTAAHC+R + + + +VLG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T EPT + V ++D N +DI L++L P + + SV + LP
Sbjct: 61 HN----VRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQD 116
Query: 147 E 147
+
Sbjct: 117 Q 117
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC--AGRGE 394
P G +GWGR A E+ V +++ CR P+ +C R +
Sbjct: 120 PHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-FFCR----------PHNICTFVPRRK 168
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVKRNMK 450
C GDSGGPLI + + + GI S+ + GC +P +TRV Y+ W++ ++
Sbjct: 169 AGICFGDSGGPLICDGI----IQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
+ +VLG ++ T EPT + V ++D N +DI L++L P + + SV
Sbjct: 54 VNVVLGAHN----VRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVAT 109
Query: 243 ICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILS 284
+ LP D P G +GWGR A E+ V +++
Sbjct: 110 VQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT 152
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+ DSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA- 390
+G G V GWG E G + V +PI+ C+ RIT NM CA
Sbjct: 136 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAY 193
Query: 391 ------GRGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 194 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 251
Query: 443 SWVKR 447
W+++
Sbjct: 252 KWIQK 256
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 15/143 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYD------GNFHCGASLINEDYVLTAAHCV------RRLKR 77
IV G + PW L F CGASLI++ +VLTAAHC+ +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 78 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKS 136
+ + + +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+
Sbjct: 61 NDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDY 118
Query: 137 VRPICLPPDSEYHTVVKGTMRCR 159
+ P+CLP ++++ + R
Sbjct: 119 IHPVCLPDRETAASLLQAGYKGR 141
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 55 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 112
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 113 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 172
Query: 284 SPGQCRAMKYKPSRITPNMLCA 305
C+ RIT NM CA
Sbjct: 173 ERPVCKDSTR--IRITDNMFCA 192
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 346 GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGDS 402
GWG T+ + + L+ V + +LS +C ++ +T MLCAG G D+C GDS
Sbjct: 130 GWGSTNPSEMVVSHDLQCVNIHLLSNEKC--IETYKDNVTDVMLCAGEMEGGKDTCAGDS 187
Query: 403 GGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNMKD 451
GGPLI + V L GI S G C +P P +Y ++ ++ SW+K+ MK+
Sbjct: 188 GGPLICDGV----LQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE 233
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N PW ++ + + CG LI+ +V+TAAHC + +++LG +
Sbjct: 1 IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCY----SNNYQVLLGRNNL 54
Query: 90 SVTTETAEPTMMRAVSSIVRHRHF-----------DVNNYNHDIALLKLRKPVSFTKSVR 138
A+ R V RH + V+++++D+ LL L +P T V+
Sbjct: 55 FKDEPFAQ---RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVK 111
Query: 139 PICLP 143
I LP
Sbjct: 112 VIDLP 116
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+ DSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVSWG GC G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR ++P++A + G+ CG +LI+ +V+TAA C + +VLG YD
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ T ++SS+ + + N N D+ LL+L + + T SV + LP +
Sbjct: 61 RRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILPLP--LQNA 115
Query: 150 TVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQ 192
TV GT R V +G+QR G + + + + DQ
Sbjct: 116 TVEAGT-----RCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQ 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RG 393
+G V GWG GG L+ V V + QCR PN +C G RG
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNVCTGVLTRRG 168
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWV 445
+ C GD G PL+ + G+ S+ +G CGR P +TRV + W+
Sbjct: 169 GI--CNGDGGTPLVCEGLAH----GVASFSLGPCGR--GPDFFTRVALFRDWI 213
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+VLG YD + T ++SS+ + + N N D+ LL+L + + T SV +
Sbjct: 53 VVLGAYDLRRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILP 109
Query: 245 LPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNML 303
LP N +G V GWG GG L+ V V + QCR PN +
Sbjct: 110 LPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNV 159
Query: 304 CAG 306
C G
Sbjct: 160 CTG 162
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 346 GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGDS 402
GWG L + L+ V + ++S C + P ++T MLCAGR G +C GDS
Sbjct: 132 GWGSIEPEEFLTPKKLQCVDLHVISNDVC--AQVHPQKVTKFMLCAGRWTGGKSTCSGDS 189
Query: 403 GGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNM 449
GGPL+ N V L GI SWG C P P +YT+V Y W+K +
Sbjct: 190 GGPLVCNGV----LQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG + PW + G CG L++ +VLTAAHC+ R+K I+LG +
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDV-----------NNYNHDIALLKLRKPVSFTKSVR 138
+T + + VS H +D+ ++ +HD+ LL+L +P T +V+
Sbjct: 57 FHPEDTGQ---VFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVK 113
Query: 139 PICLP 143
+ LP
Sbjct: 114 VMDLP 118
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS-GKMGTVVGWGRTSEGGSLATEALE 277
++ +HD+ LL+L +P T +V+ + LP +P+ G GWG L + L+
Sbjct: 91 DDSSHDLMLLRLSEPAELTDAVKVMDLPTQ--EPALGTTCYASGWGSIEPEEFLTPKKLQ 148
Query: 278 -VQVPILSPGQCRAMKYKPSRITPNMLCAGR 307
V + ++S C + P ++T MLCAGR
Sbjct: 149 CVDLHVISNDVC--AQVHPQKVTKFMLCAGR 177
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVS G GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A L +G+ CG L++ +VLTAAHC+ + + +++R+VLG +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 90 SVTTETAEPTMMRAVSSIVRH-RHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
P + + + ++H R+ V +D+ALL+L V ++++RP+ LP S+
Sbjct: 60 D------SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALP--SKR 111
Query: 149 HTVVKGTMRC 158
V GT RC
Sbjct: 112 QVVAAGT-RC 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDS 397
+G ++ GWG T +GG L+ E+ + +L C ++ ++P+M+C D
Sbjct: 116 AGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQ 175
Query: 398 --CQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKR 447
C+GDSGGPL+ GR L G++S+ C P V T V Y+SW+++
Sbjct: 176 APCKGDSGGPLVCGK-GRV-LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRK 226
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRH-RHFDVNNYNHDIALLKLRKPVSFTKS 239
+++R+VLG + P + + + ++H R+ V +D+ALL+L V +++
Sbjct: 48 AQLRLVLGLHTLD------SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT 101
Query: 240 VRPICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
+RP+ LP + +G ++ GWG T +GG L+ E+ + +L C ++ +
Sbjct: 102 IRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 299 TPNMLCAGRGEMD 311
+P+M+C D
Sbjct: 162 SPSMVCLAADSKD 174
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR ++P++A + G CG +LI+ +V+TAA C + +VLG YD
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ T ++SS+ + + N N D+ LL+L + + T SV + LP +
Sbjct: 61 RRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILPLP--LQNA 115
Query: 150 TVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQ 192
TV GT R V +G+QR G + + + + DQ
Sbjct: 116 TVEAGT-----RCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQ 153
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RG 393
+G V GWG GG L+ V V + QCR PN +C G RG
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNVCTGVLTRRG 168
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWV 445
+ C GD G PL+ + G+ S+ +G CGR P +TRV + W+
Sbjct: 169 GI--CNGDGGTPLVCEGLAH----GVASFSLGPCGR--GPDFFTRVALFRDWI 213
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+VLG YD + T ++SS+ + + N N D+ LL+L + + T SV +
Sbjct: 53 VVLGAYDLRRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILP 109
Query: 245 LPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNML 303
LP N +G V GWG GG L+ V V + QCR PN +
Sbjct: 110 LPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNV 159
Query: 304 CAG 306
C G
Sbjct: 160 CTG 162
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR ++P++A + G CG +LI+ +V+TAA C + +VLG YD
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ T ++SS+ + + N N D+ LL+L + + T SV + LP +
Sbjct: 61 RRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILPLP--LQNA 115
Query: 150 TVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQ 192
TV GT R V +G+QR G + + + + DQ
Sbjct: 116 TVEAGT-----RCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQ 153
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 23/113 (20%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RG 393
+G V GWG GG L+ V V + QCR PN +C G RG
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNVCTGVLTRRG 168
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWV 445
+ C GD G PL+ + G+ S+ +G CGR P +TRV + W+
Sbjct: 169 GI--CNGDQGTPLVCEGLAH----GVASFSLGPCGR--GPDFFTRVALFRDWI 213
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+VLG YD + T ++SS+ + + N N D+ LL+L + + T SV +
Sbjct: 53 VVLGAYDLRRRERQSRQTF--SISSMSENGYDPQQNLN-DLMLLQLDREANLTSSVTILP 109
Query: 245 LPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNML 303
LP N +G V GWG GG L+ V V + QCR PN +
Sbjct: 110 LPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNV 159
Query: 304 CAG 306
C G
Sbjct: 160 CTG 162
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+C+GDSGGP ++ R+ +GIVS G GC R G G YT V R
Sbjct: 190 YKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 346 GWGRTSEGG---SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQG 400
GWG G E VQ+ +L C P ++T +MLCAG G D+C G
Sbjct: 45 GWGSIEPGPDDFEFPDEIQCVQLTLLQNTFC--ADAHPDKVTESMLCAGYLPGGKDTCMG 102
Query: 401 DSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWV 445
DSGGPLI N G ++ GI SWG CG P +YT++ YL W+
Sbjct: 103 DSGGPLICN--GMWQ--GITSWGHTPCGSANKPSIYTKLIFYLDWI 144
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 338 SGKMGTVVGWGRTSE------GGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G G V GWG E G + V +PI+ C+ RIT NM CAG
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR--IRITDNMFCAG 189
Query: 392 -------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
RG D+ +GDSGGP ++ R+ +GIVSWG G R G G YT V R
Sbjct: 190 YKPDEGKRG--DAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLK 247
Query: 443 SWVKR 447
W+++
Sbjct: 248 KWIQK 252
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE------GGSLATEALEVQVPIL 283
V+F+ + P+CLP S G G V GWG E G + V +PI+
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 168
Query: 284 SPGQCRAMKYKPSRITPNMLCAG 306
C+ RIT NM CAG
Sbjct: 169 ERPVCKDSTR--IRITDNMFCAG 189
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 30 IVGGRPTGVNKYPWVARLV----YDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L Y G+ CG LI ED+VLTAAHC SKI++ LG
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHC----SGSKIQVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ E + + V I+ H ++ ++DI LLKL+ + +V+P+ LP
Sbjct: 57 AHN---IKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLP 111
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMD-- 396
G + V GWG+ G + EV++ + +C + K N +CAG ++
Sbjct: 120 GDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESY-LKNYFDKANEICAGDPKIKRA 178
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
S +GDSGGPL+ V GIVS+G G P +T+V+ +LSW+K+ MK +
Sbjct: 179 SFRGDSGGPLVCKKVA----AGIVSYGQNDGST--PRAFTKVSTFLSWIKKTMKKS 228
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
SKI++ LG ++ E + + V I+ H ++ ++DI LLKL+ + +V
Sbjct: 49 SKIQVTLGAHN---IKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAV 105
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+P+ LP N+ G + V GWG+ G + EV++ + +C + K
Sbjct: 106 KPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESY-LKNYFDK 164
Query: 300 PNMLCAG 306
N +CAG
Sbjct: 165 ANEICAG 171
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLP 143
CLP
Sbjct: 119 CLP 121
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 175 DVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKP 233
D + + + +G + ++ E M + I H ++ N + DIAL+KL+KP
Sbjct: 51 DKNFTENDLLVRIGKHSRTRYERNIEKISM--LEKIYIHPRYNWRENLDRDIALMKLKKP 108
Query: 234 VSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE 267
V+F+ + P+CLP S G G V GWG E
Sbjct: 109 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 146
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 319 RRPTESHLHFHFLSTDIDPS--GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCRA 375
RP + H LS +P G + ++GWG TS +L + IL C+A
Sbjct: 92 NRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQA 151
Query: 376 MKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYP 432
YK + LCAG G D+C+GDSGGPLI N G+++ GI+S G C +P P
Sbjct: 152 -AYK--GLAATTLCAGILEGGKDTCKGDSGGPLICN--GQFQ--GILSVGGNPCAQPRKP 204
Query: 433 GVYTRVNRYLSWVK 446
G+YT+V Y W++
Sbjct: 205 GIYTKVFDYTDWIQ 218
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 17/121 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ ++A LVY CG +LIN+++VLTA HC R +RI LG ++
Sbjct: 1 VIGGDECNINEHRFLA-LVYANGSLCGGTLINQEWVLTARHC----DRGNMRIYLGMHNL 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNN-----YNHDIALLKLRKPVSFTKSVRPICLPP 144
V + A+ + ++F +N ++ DI L++L +PV + + P+ LP
Sbjct: 56 KVLNKD-------ALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPS 108
Query: 145 D 145
+
Sbjct: 109 N 109
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEM 395
G++ +V GWG S +LAT EV + + QC R SR T +C G +
Sbjct: 119 GQLCSVAGWGYVSMS-TLATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGDPKKTQ 175
Query: 396 DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+GDSGGPL+ DV + GI+S+G G P PGVY +V+ +L W+KR MK
Sbjct: 176 TGFKGDSGGPLVCKDVAQ----GILSYGNKKGTP--PGVYIKVSHFLPWIKRTMK 224
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVY---DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A + + CG L+ +D+VLTAAHC + S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ E V + H ++ N+++DI LL+L + +T +VRP+ LP
Sbjct: 57 HN---IKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLP 110
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I + LG ++ E V + H ++ N+++DI LL+L + +T +V
Sbjct: 48 SSINVTLGAHN---IKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAV 104
Query: 241 RPICLPPD--NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAM 291
RP+ LP + P G++ +V GWG S +LAT EV + + QC +
Sbjct: 105 RPLRLPSSKAQVKP-GQLCSVAGWGYVSM-STLATTLQEVLLTVQKDCQCERL 155
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 363 VQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEM---DSCQGDSGGPLIINDV--GRYE 415
V +P++ C+A RIT NM CAG GE D+C+GDSGGP ++ R+
Sbjct: 13 VNLPLVERPVCKASTR--IRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWY 70
Query: 416 LVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
+GIVSWG GC R G G YT V R W+++
Sbjct: 71 QMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 102
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQC-RAMKYKPSRITPNMLCAG--RGEM 395
G++ +V GWG S +LAT EV + + QC R SR T +C G +
Sbjct: 119 GQLCSVAGWGYVSMS-TLATTLQEVLLTVQKDCQCERLFHGNYSRATE--ICVGDPKKTQ 175
Query: 396 DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+GDSGGPL+ DV + GI+S+G G P PGVY +V+ +L W+KR MK
Sbjct: 176 TGFKGDSGGPLVCKDVAQ----GILSYGNKKGTP--PGVYIKVSHFLPWIKRTMK 224
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVY---DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A + + CG L+ +D+VLTAAHC + S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ E V + H ++ N++++I LL+L + +T +VRP+ LP
Sbjct: 57 HN---IKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLP 110
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTS-EGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T+ G GWG E S + V + IL +C+ K ++T MLC
Sbjct: 118 LPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK--KAHVQKVTDFMLC 175
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
G G D+C GDSGGPL+ + V L G+ SWG V CG P P V RV Y+ W++
Sbjct: 176 VGHLEGGKDTCVGDSGGPLMCDGV----LQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIE 231
Query: 447 RNMKD 451
+ +
Sbjct: 232 DTIAE 236
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD- 88
IVGG + PW A L + F CG L++ +VLTAAHC+ ++ LG ++
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNL 56
Query: 89 -------QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV-SFTKSVRPI 140
Q V + P +S + H +Y+HD+ LL+L +P + T +V+ +
Sbjct: 57 FDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVV 116
Query: 141 CLP 143
LP
Sbjct: 117 ELP 119
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 30/189 (15%)
Query: 152 VKGTMRCRQ-----RAAVLAFGTQRDG----------SDVKLVSSKIRIVLGDYD----- 191
+ G C Q +AA+ F T + G + +S ++ LG ++
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQLWLGRHNLFDDE 60
Query: 192 ---QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV-SFTKSVRPICLPP 247
Q V + P +S + H +Y+HD+ LL+L +P + T +V+ + LP
Sbjct: 61 NTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPT 120
Query: 248 DNIDPSGKMGTVVGWGRTS-EGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 306
+ + G GWG E S + V + IL +C+ K ++T MLC G
Sbjct: 121 EEPE-VGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK--KAHVQKVTDFMLCVG 177
Query: 307 --RGEMDSC 313
G D+C
Sbjct: 178 HLEGGKDTC 186
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 11/130 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A L +G+ CG L++ +VLTAAHC+ + + +++R+VLG +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 90 SVTTETAEPTMMRAVSSIVRH-RHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
P + + + ++H R+ V +++ALL+L V ++++RP+ LP S+
Sbjct: 60 D------SPGLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALP--SKR 111
Query: 149 HTVVKGTMRC 158
V GT RC
Sbjct: 112 QVVAAGT-RC 120
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 338 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDS 397
+G ++ GWG T +GG L+ E+ + +L C ++ ++P+M+C D
Sbjct: 116 AGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQ 175
Query: 398 --CQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKR 447
C+GDSGGPL+ GR L G++S+ C P V T V Y+SW+++
Sbjct: 176 APCKGDSGGPLVCGK-GRV-LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRK 226
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRH-RHFDVNNYNHDIALLKLRKPVSFTKS 239
+++R+VLG + P + + + ++H R+ V +++ALL+L V +++
Sbjct: 48 AQLRLVLGLHTLD------SPGLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRT 101
Query: 240 VRPICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
+RP+ LP + +G ++ GWG T +GG L+ E+ + +L C ++ +
Sbjct: 102 IRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 299 TPNMLCAGRGEMD 311
+P+M+C D
Sbjct: 162 SPSMVCLAADSKD 174
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 334 DIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG 393
DI P+ + GWGR GG L + E +P++ C + + M+CAG
Sbjct: 132 DILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVKKTMVCAGGD 191
Query: 394 EMDSCQGDSGGPLIINDV-GRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRNM 449
C GDSGGPL G +++ G+ S+ GC P V+TRV+ ++ W+ +
Sbjct: 192 TRSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETI 250
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 29 RIVGGRPTGVNKYPWVARLVY--DGNFH--CGASLINEDYVLTAAHCVRRLKRSKIRIVL 84
R+V G + W L Y DG FH CG SLI D+V+TA HC+ + ++VL
Sbjct: 11 RVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR--TYQVVL 68
Query: 85 GDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFTKSVRPICL 142
G+YD+SV + +E + + H ++ N +DIAL+KL + V+ L
Sbjct: 69 GEYDRSV-LQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANL 127
Query: 143 PP 144
PP
Sbjct: 128 PP 129
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFT 237
S ++VLG+YD+SV + +E + + H ++ N +DIAL+KL +
Sbjct: 61 SRTYQVVLGEYDRSVL-QGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 119
Query: 238 KSVRPICLPP-DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V+ LPP +I P+ + GWGR GG L + E +P++ C +
Sbjct: 120 DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGI 179
Query: 297 RITPNMLCAGRGEMDSC 313
+ M+CAG C
Sbjct: 180 TVKKTMVCAGGDTRSGC 196
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Query: 382 RITPNMLCAG-------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYP 432
RIT NM CAG RG D+C+GDSGGP ++ R+ +GIVSWG GC R G
Sbjct: 26 RITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY 83
Query: 433 GVYTRVNRYLSWVKR 447
G YT V R W+++
Sbjct: 84 GFYTHVFRLKKWIQK 98
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Query: 382 RITPNMLCAG-------RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYP 432
RIT NM CAG RG D+C+GDSGGP ++ R+ +GIVSWG GC R G
Sbjct: 26 RITDNMFCAGYKPDEGKRG--DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY 83
Query: 433 GVYTRVNRYLSWVKR 447
G YT V R W+++
Sbjct: 84 GFYTHVFRLKKWIQK 98
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 339 GKMGTVVGWGRTS-EGGSLATEALEVQVPILSPGQCRAMKYKPSRI--TPNMLCAG--RG 393
G + ++GWGR S G+ V + +L CRA Y + T LCAG G
Sbjct: 117 GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRA-PYPEFELPATSRTLCAGILEG 175
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVK 446
D+C+GDSGGPLI N G+++ GI SWG C +P P YT+V +L W++
Sbjct: 176 GKDTCKGDSGGPLICN--GQFQ--GIASWGDDPCAQPHKPAAYTKVFDHLDWIE 225
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
I+GG +N++ ++ L + CG +LIN+++VLTAAHC R+ RI LG +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK----NFRIKLGMH 56
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
+ V E + + + + +++ + ++ DI L++L PV +K +
Sbjct: 57 SKKVPNEDEQTRVPKEKFFCLSSKNYTL--WDKDIMLIRLDSPVKNSKHI 104
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N P+ L G+ CG SLIN +V++AAHC +S+I++ LG+++
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E + A I+ H +F+ N ++DI L+KL P + V + LP
Sbjct: 56 DV-LEGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP 106
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 100
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRT 265
+ L P + +G + GWG T
Sbjct: 101 ATVSL-PRSCAAAGTECLISGWGNT 124
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 346 GWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR--GEMDSCQGDSG 403
GWG + + L+ L P + A Y ++T MLCAG G D+C+ DSG
Sbjct: 132 GWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL-QKVTDVMLCAGEMGGGKDTCRDDSG 190
Query: 404 GPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNM 449
GPLI + + L G S+G V CG+PG P +YT + ++ SW+K M
Sbjct: 191 GPLICDGI----LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG N PW + Y CG L++ ++VLTAAHC + + LG
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY----VDQYEVWLGKNKL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVSFTKSVR 138
+A+ R VS H F+++ +++ D+ LL+L KP T V+
Sbjct: 57 FQEEPSAQ---HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVK 113
Query: 139 PICLP 143
PI LP
Sbjct: 114 PIALP 118
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 200 EPTMM-RAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVSFTKSVRPICLPP 247
EP+ R VS H F+++ +++ D+ LL+L KP T V+PI LP
Sbjct: 60 EPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPT 119
Query: 248 DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR 307
P K GWG + + L+ L P + A Y ++T MLCAG
Sbjct: 120 KEPKPGSKC-LASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYL-QKVTDVMLCAGE 177
Query: 308 --GEMDSCQD 315
G D+C+D
Sbjct: 178 MGGGKDTCRD 187
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 346 GWGRTSEGGSLATEAL--EVQVPILSPGQCRAMKYKPSRI------TPNMLCAGRGEM-- 395
GWG+ G + ++Q+P + +C+A + +R+ +CAG GE
Sbjct: 268 GWGKKEFGSRHRYSNILKKIQLPTVDRDKCQA-DLRNTRLGLKFVLDQTFVCAG-GEQGK 325
Query: 396 DSCQGDSGGPLIINDV---GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+C GD G PL D RY +GIV+WG+GCG PGVY V + +W+ + M+
Sbjct: 326 DTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ 383
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 21 CGVTNQ---EVRIVGG-RPTGVNKYPWVARLVY--------DGNFHCGASLINEDYVLTA 68
CG+ N+ + +I G ++PW+ ++ + CG SLI VLT
Sbjct: 118 CGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTG 177
Query: 69 AHCVRRLKRS--KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLK 126
AHCV + + I+I G++D ++T + P R + ++ H +F+ +D+ALL
Sbjct: 178 AHCVNSYQSNLDAIKIRAGEWD-TLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLL 236
Query: 127 LRKPVSFTKSVRPICLPPDSE 147
L +P+ ++ ICLP S+
Sbjct: 237 LDRPLVQADNIGTICLPQQSQ 257
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I+I G++D ++T + P R + ++ H +F+ +D+ALL L +P+ ++
Sbjct: 191 IKIRAGEWD-TLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGT 249
Query: 243 ICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPGQCRA 290
ICLP + GWG+ G + ++Q+P + +C+A
Sbjct: 250 ICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQA 299
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMD- 396
G GWG T+ + L+ V + +L C K ++T MLCAG EMD
Sbjct: 128 GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD--KAHEMKVTDAMLCAG--EMDG 183
Query: 397 ---SCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNMKDT 452
+C+ DSGGPLI + + L GI SWG CG P P VYT++ ++ SW++ M +
Sbjct: 184 GSYTCEHDSGGPLICDGI----LQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANN 239
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 39 NKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEP 98
N PW + + CG L++ ++VLTAAHC K ++ LG ++ E
Sbjct: 13 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY----NDKYQVWLG---KNNFLEDEPS 65
Query: 99 TMMRAVSSIVRHRHFDV-----------NNYNHDIALLKLRKPVSFTKSVRPICLP 143
R VS + H F++ ++Y++D+ LL+L KP T V+PI LP
Sbjct: 66 DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLP 121
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 23/122 (18%)
Query: 205 RAVSSIVRHRHFDV-----------NNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS 253
R VS + H F++ ++Y++D+ LL+L KP T V+PI LP +
Sbjct: 69 RLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTE----E 124
Query: 254 GKMGTVV---GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGRGE 309
K+G+ GWG T+ + L+ V + +L C K ++T MLCA GE
Sbjct: 125 PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD--KAHEMKVTDAMLCA--GE 180
Query: 310 MD 311
MD
Sbjct: 181 MD 182
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
Query: 385 PNMLCAGRGE--MDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRY 441
P+M CAG G+ DSC GDSGGPLI N L G+VS+G CG+ G PGVYT + ++
Sbjct: 158 PSMFCAGGGQDQKDSCNGDSGGPLICNGY----LQGLVSFGKAPCGQVGVPGVYTNLCKF 213
Query: 442 LSWVKRNMK 450
W+++ ++
Sbjct: 214 TEWIEKTVQ 222
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ G + PW A LV + C L++ +VL+AAHC + + + + DQ
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQ 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
++ E ++ VRH ++ +D+ L+KL + VS + ++R I
Sbjct: 61 EPGSQMVEASLS------VRHPEYNRPLLANDLMLIKLDESVSESDTIRSI 105
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 192 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNID 251
S+ + + M S VRH ++ +D+ L+KL + VS + ++R I +
Sbjct: 54 HSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISI-ASQCP 112
Query: 252 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG--E 309
+G V GWG + G L+ + + + Y P P+M CAG G +
Sbjct: 113 TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLYDP-LYHPSMFCAGGGQDQ 169
Query: 310 MDSC 313
DSC
Sbjct: 170 KDSC 173
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G+ V PW L CGASLI++ +VLTAAHC+ + +
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E M + I H ++ N + DIALLKL++P+ + + P+
Sbjct: 61 VRIGKHSRTRYERKVEKISM--LDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRD 172
CLP ++ + R V +G +R+
Sbjct: 119 CLPDKQTAAKLLHAGFKGR----VTGWGNRRE 146
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 219 NNYNHDIALLKLRKPVSFTKSVRPICLPPDN----IDPSGKMGTVVGWGRTSE 267
N + DIALLKL++P+ + + P+CLP + +G G V GWG E
Sbjct: 94 ENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRE 146
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 339 GKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM--KYKPSRITPNMLCAG--RG 393
G + TV GWGR S T+ L EVQ+ + QC + Y P R +C G R
Sbjct: 119 GTLCTVAGWGRVSM--RRGTDTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGDRRE 172
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDTC 453
+ +GDSGGPL+ N+V GIVS+G G P P V+TRV+ +L W++ M+
Sbjct: 173 RKAAFKGDSGGPLLCNNVAH----GIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMRSFK 226
Query: 454 L 454
L
Sbjct: 227 L 227
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYD---GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GGR + + P++A L G CG L+ ED+VLTAAHC S I + LG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKL 127
++ T + R +RH ++ +DI LL+L
Sbjct: 57 HNIQRRENTQQHITARRA---IRHPQYNQRTIQNDIMLLQL 94
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I + LG ++ T + R +RH ++ +DI LL+L + V ++V
Sbjct: 48 SNINVTLGAHNIQRRENTQQHITARRA---IRHPQYNQRTIQNDIMLLQLSRRVRRNRNV 104
Query: 241 RPICLP--PDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM--KYKP 295
P+ LP + + P G + TV GWGR S T+ L EVQ+ + QC + Y P
Sbjct: 105 NPVALPRAQEGLRP-GTLCTVAGWGRVSM--RRGTDTLREVQLRVQRDRQCLRIFGSYDP 161
Query: 296 SRITPNMLCAG 306
R +C G
Sbjct: 162 RR----QICVG 168
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG + PW + + G+F CG L++ +VLTAAHC+ +I LG ++
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM----SDDYQIWLGRHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDV-----------NNYNHDIALLKLRKPVSFTKSVR 138
S +TA+ VS FD+ ++ +HD+ LL+L +P T +V+
Sbjct: 57 SKDEDTAQ---FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVK 113
Query: 139 PICLP 143
+ LP
Sbjct: 114 ILDLP 118
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 346 GWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDS---CQGD 401
GWG S + + L+ V++ + S +C A Y P ++T +LCA + DS C GD
Sbjct: 132 GWGLISTFTNRGSGTLQCVELRLQSNEKC-ARAY-PEKMTEFVLCATHRD-DSGSICLGD 188
Query: 402 SGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNMK 450
SGG LI + V GI SWG C V+T+V + W+K ++
Sbjct: 189 SGGALICDGV----FQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 339 GKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM--KYKPSRITPNMLCAG--RG 393
G + TV GWGR S T+ L EVQ+ + QC + Y P R +C G R
Sbjct: 119 GTLCTVAGWGRVSM--RRGTDTLREVQLRVQRDRQCLRIFGSYDPRR----QICVGDRRE 172
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ +GDSGGPL+ N+V GIVS+G G P P V+TRV+ +L W++ M+
Sbjct: 173 RKAAFKGDSGGPLLCNNVAH----GIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMRS 224
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYD---GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GGR + + P++A L G CG L+ ED+VLTAAHC S I + LG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T + R +RH ++ +DI LL+L + V ++V P+ LP
Sbjct: 57 HNIQRRENTQQHITARRA---IRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQ 113
Query: 147 E 147
E
Sbjct: 114 E 114
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S I + LG ++ T + R +RH ++ +DI LL+L + V ++V
Sbjct: 48 SNINVTLGAHNIQRRENTQQHITARRA---IRHPQYNQRTIQNDIMLLQLSRRVRRNRNV 104
Query: 241 RPICLP--PDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM--KYKP 295
P+ LP + + P G + TV GWGR S T+ L EVQ+ + QC + Y P
Sbjct: 105 NPVALPRAQEGLRP-GTLCTVAGWGRVSM--RRGTDTLREVQLRVQRDRQCLRIFGSYDP 161
Query: 296 SRITPNMLCAG 306
R +C G
Sbjct: 162 RR----QICVG 168
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++P++A L G F CG +LIN+++V+TAAHC + ++ LG + +
Sbjct: 1 VLGGDECDINEHPFLAFLYSHGYF-CGLTLINQEWVVTAAHC----DSTNFQMQLGVHSK 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E E T I +++ + DI L+KL KP+S +K + P+ LP
Sbjct: 56 KVLNED-EQTRNPKEKFICPNKNMS-EVLDKDIMLIKLDKPISNSKHIAPLSLP 107
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 320 RPTESHLHFHFLSTDIDPS--GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCR-A 375
+P + H LS +P G + ++GWG T + + ++ C+ A
Sbjct: 93 KPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGA 152
Query: 376 MKYKPSRITPNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYP 432
P++ T LCAG G D+C GDSGGPLI N G+++ GIVS+G CG+ P
Sbjct: 153 YNGLPAKTT---LCAGVLEGGKDTCVGDSGGPLICN--GQFQ--GIVSYGAHSCGQGPKP 205
Query: 433 GVYTRVNRYLSWVKRNM 449
G+YT V Y W++RN+
Sbjct: 206 GIYTNVFDYTDWIQRNI 222
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 222 NHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTS 266
+ DI L+KL KP+S +K + P+ L P N G + ++GWG +
Sbjct: 83 DKDIMLIKLDKPISNSKHIAPLSL-PSNPPSVGSVCRIMGWGSIT 126
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 334 DIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRG 393
DI P+ + GWGR GG L + + +P + C + + M+CAG
Sbjct: 119 DILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGD 178
Query: 394 EMDSCQGDSGGPLIINDV-GRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRNM 449
C GDSGGPL G +++ G+ S+ GC P V+TRV+ ++ W+ +
Sbjct: 179 TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 40 KYPWVARLVY--DGNFH--CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTET 95
+ W L Y DG FH CG SLI D+V+TA HC+ + ++VLG+YD+SV E
Sbjct: 9 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR--TYQVVLGEYDRSV-LEG 65
Query: 96 AEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFTKSVRPICLPP 144
+E + + H ++ N +DIAL+KL + V+ LPP
Sbjct: 66 SEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPP 116
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFT 237
S ++VLG+YD+SV E +E + + H ++ N +DIAL+KL +
Sbjct: 48 SRTYQVVLGEYDRSVL-EGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 106
Query: 238 KSVRPICLPP-DNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V+ LPP +I P+ + GWGR GG L + + +P + C +
Sbjct: 107 DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI 166
Query: 297 RITPNMLCAGRGEMDSCQ 314
+ M+CAG C
Sbjct: 167 TVKKTMVCAGGDTRSGCN 184
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMD 396
G M +V GWGR + EV + + S +C A ++K + I +CAG +
Sbjct: 119 GMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIA-RFK-NYIPFTQICAGDPSKRKN 176
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
S GDSGGPL+ N V + GIVS+G G P VYTR++ +LSW+ M+
Sbjct: 177 SFSGDSGGPLVCNGVAQ----GIVSYGRNDGT--TPDVYTRISSFLSWIHSTMR 224
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVY--DGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A L++ G H CG L+ ED+VLTAAHC+ S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL----GSSINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ E + V + H ++ +DI LLKL + T V PI LP
Sbjct: 57 HN---IMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLP 110
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+ S I + LG ++ E + V + H ++ +DI LLKL + T
Sbjct: 46 LGSSINVTLGAHN---IMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITD 102
Query: 239 SVRPICLPPD--NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V PI LP + P G M +V GWGR + EV + + S +C A ++K +
Sbjct: 103 KVSPINLPRSLAEVKP-GMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIA-RFK-N 159
Query: 297 RITPNMLCAG 306
I +CAG
Sbjct: 160 YIPFTQICAG 169
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 339 GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEM 395
G + ++GWG T + + +L C+A Y LCAG +G
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQA-GYPELLAEYRTLCAGIVQGGK 173
Query: 396 DSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNM 449
D+C GDSGGPLI N G+++ GIVS+G CG+ PG+YT V Y W++RN+
Sbjct: 174 DTCGGDSGGPLICN--GQFQ--GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ ++ F CG +LIN ++V+TAAHC + ++ LG + +
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTNFQMQLGVHSK 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
V E + + + +V + DI L+KL KP+S +K +
Sbjct: 57 KVLNEDEQTRNPKEKFICPNKNNNEV--LDKDIMLIKLDKPISNSKHI 102
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 339 GKMGTVVGWGR-TSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEM 395
G + ++GWG T + + +L C+A Y LCAG +G
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQA-GYPELLAEYRTLCAGIVQGGK 173
Query: 396 DSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNM 449
D+C GDSGGPLI N G+++ GIVS+G CG+ PG+YT V Y W++RN+
Sbjct: 174 DTCGGDSGGPLICN--GQFQ--GIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ ++ F CG +LIN ++V+TAAHC + ++ LG + +
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTDFQMQLGVHSK 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
V E + + + +V + DI L+KL KP+S +K +
Sbjct: 57 KVLNEDEQTRNPKEKFICPNKNNNEV--LDKDIMLIKLDKPISNSKHI 102
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 25 NQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVL 84
+Q RI+GG +PW A+++ N GA+LINE ++LT A +R L
Sbjct: 98 DQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLR----------L 147
Query: 85 GDYDQSVTTETAEPTMMRAVSSI----VRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
G + + + A PT+ V + F +N DI L+KL++ V + V PI
Sbjct: 148 GHKNDTKAKDIA-PTLRLYVGKKQEVEIEKVIFHPDNSTVDIGLIKLKQKVPVNERVMPI 206
Query: 141 CLPPDSEYHTVVKGTMRCRQRAAVLAF 167
CLP + + G + R A L F
Sbjct: 207 CLPSKDYVNVGLVGYVSGWGRNANLNF 233
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALE-VQVPILSPGQCRAMKYK----PSRITP- 385
S D G +G V GWGR + TE L+ V +P+ +C Y+ P + TP
Sbjct: 210 SKDYVNVGLVGYVSGWGRNANLN--FTEHLKYVMLPVADQEKC-VQYYEGSTVPEKKTPK 266
Query: 386 -----------NMLCAG--RGEMDSCQGDSGGPLIINDVG--RYELVGIVSWGVGCGRPG 430
+ CAG + + D+C GD+G ++D + GI+S+ C
Sbjct: 267 SPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRTAE 326
Query: 431 YPGVYTRVNRYLSWVKRNMKD 451
Y GVY RV L W++ + D
Sbjct: 327 Y-GVYVRVTSILDWIQTTIAD 346
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 216 FDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEA 275
F +N DI L+KL++ V + V PICLP + G +G V GWGR + TE
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLN--FTEH 236
Query: 276 LE-VQVPILSPGQC 288
L+ V +P+ +C
Sbjct: 237 LKYVMLPVADQEKC 250
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MKYKPSRITPNMLCAGRGEMD 396
G+ +V GWG+T+ G + EV++ + +C + Y S I LC G E+
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCVGDPEIK 175
Query: 397 --SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
S +GDSGGPL+ N V + GIVS+G G P P T+V+ ++ W+K+ MK
Sbjct: 176 KTSFKGDSGGPLVCNKVAQ----GIVSYGRNNGMP--PRACTKVSSFVHWIKKTMK 225
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGNF--HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A L ++D CG LI +D+VLTAAHC S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCW----GSSINVTLGA 56
Query: 87 YDQSVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + EPT V + H ++ N+++DI LL+L + T++V+P+ LP
Sbjct: 57 HN----IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMR-AVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
S I + LG ++ + EPT V + H ++ N+++DI LL+L + T++
Sbjct: 48 SSINVTLGAHN----IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRA 103
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MKYKPS 296
V+P+ LP + G+ +V GWG+T+ G + EV++ + +C + Y S
Sbjct: 104 VQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDS 163
Query: 297 RITPNMLCAGRGEM 310
I LC G E+
Sbjct: 164 TIE---LCVGDPEI 174
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 339 GKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MKYKPSRITPNMLCAGRGEMD 396
G+ +V GWG+T+ G + EV++ + +C + Y S I LC G E+
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE---LCVGDPEIK 175
Query: 397 --SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
S +GDSGGPL+ N V + GIVS+G G P P T+V+ ++ W+K+ MK
Sbjct: 176 KTSFKGDSGGPLVCNKVAQ----GIVSYGRNNGMP--PRACTKVSSFVHWIKKTMK 225
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGNF--HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A L ++D CG LI +D+VLTAAHC S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSINVTLGA 56
Query: 87 YDQSVTTETAEPT-MMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ + EPT V + H ++ N+++DI LL+L + T++V+P+ LP
Sbjct: 57 HN----IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTM-MRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
S I + LG ++ + EPT V + H ++ N+++DI LL+L + T++
Sbjct: 48 SSINVTLGAHN----IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRA 103
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRA--MKYKPS 296
V+P+ LP + G+ +V GWG+T+ G + EV++ + +C + Y S
Sbjct: 104 VQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDS 163
Query: 297 RITPNMLCAGRGEM 310
I LC G E+
Sbjct: 164 TIE---LCVGDPEI 174
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 62 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 121
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 122 YGQTIRPICLP------------------------------------CTEGTTRAL---- 141
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 142 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 200
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 201 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 241
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 242 RSRFIQVGVISWGV 255
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 22 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 71
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 72 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 131
Query: 143 P 143
P
Sbjct: 132 P 132
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N +P A L D + CG SLI+ +++LTAAHC+ + +VLG ++
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMD--GAGFVDVVLGAHN- 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + A +++ V H +++ ++DIA+++L PV+ T ++ + LP
Sbjct: 58 -IREDEATQVTIQSTDFTV-HENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP 109
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 332 STDIDPSGKMGTVV---GWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNM 387
STD+ +GTVV GWG S+ ++ L +V VPI+S C A+ +T
Sbjct: 110 STDV----GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY---GIVTDGN 162
Query: 388 LCA-GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCG-RPGYPGVYTRVNRYLSWV 445
+C G +C GDSGGPL N + GI S+G G GYP +TRV +L W+
Sbjct: 163 ICIDSTGGKGTCNGDSGGPLNYNGL----TYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
Query: 446 K 446
+
Sbjct: 219 Q 219
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 213 HRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVV---GWGRTSEGG 269
H +++ ++DIA+++L PV+ T ++ + LP ++ +GTVV GWG S+
Sbjct: 76 HENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV----GVGTVVTPTGWGLPSDSA 131
Query: 270 SLATEAL-EVQVPILSPGQCRAM 291
++ L +V VPI+S C A+
Sbjct: 132 LGISDVLRQVDVPIMSNADCDAV 154
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 261 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 320
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 321 YGQTIRPICLP------------------------------------CTEGTTRAL---- 340
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 341 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 399
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 400 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 440
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 441 RSRFIQVGVISWGV 454
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 221 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 270
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 271 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 330
Query: 143 P 143
P
Sbjct: 331 P 331
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 269 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 328
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 329 YGQTIRPICLP------------------------------------CTEGTTRAL---- 348
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 349 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 407
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 408 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 448
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 449 RSRFIQVGVISWGV 462
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 229 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 278
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 279 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 338
Query: 143 P 143
P
Sbjct: 339 P 339
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 23/183 (12%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + + P++A L + N CG LI ++VLTAAHC R I + LG
Sbjct: 1 IIGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ TE + V RH ++ + +HDI LLKL++ S T +V LP
Sbjct: 57 AHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPFP 111
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-------LGDYDQSVTTET 198
S+++ V G M CR A G + GSD L K+R++ D+D ++
Sbjct: 112 SQFNFVPPGRM-CRV-AGWGRTGVLKPGSDT-LQEVKLRLMDPQACSHFRDFDHNLQLCV 168
Query: 199 AEP 201
P
Sbjct: 169 GNP 171
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 287 QCRAMKYKPSRITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVG 346
Q R KY S + +++ E S P S +F P G+M V G
Sbjct: 75 QFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-------VPPGRMCRVAG 127
Query: 347 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGG 404
WGRT + EV++ ++ P C + + LC G R + +GDSGG
Sbjct: 128 WGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL---QLCVGNPRKTKSAFKGDSGG 184
Query: 405 PLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
PL+ V + GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 185 PLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 224
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I + LG ++ TE + V RH ++ + +HDI LLKL++ S T +V
Sbjct: 51 ITVTLGAHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGT 107
Query: 243 ICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
+ P N P G+M V GWGRT + EV++ ++ P C +
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR 158
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 287 QCRAMKYKPSRITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVG 346
Q R KY S + +++ E S P S +F P G+M V G
Sbjct: 75 QFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-------VPPGRMCRVAG 127
Query: 347 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGG 404
WGRT + EV++ ++ P C + + LC G R + +GDSGG
Sbjct: 128 WGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL---QLCVGNPRKTKSAFKGDSGG 184
Query: 405 PLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
PL+ V + GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 185 PLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 224
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + N CG LI ++VLTAAHC R I + LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ TE + V RH ++ + +HDI LLKL++ S T +V LP
Sbjct: 57 AHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPFP 111
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-------LGDYDQSVTTET 198
S+++ V G M CR A G + GSD L K+R++ D+D ++
Sbjct: 112 SQFNFVPPGRM-CRV-AGWGRTGVLKPGSDT-LQEVKLRLMDPQACSHFRDFDHNLQLCV 168
Query: 199 AEP 201
P
Sbjct: 169 GNP 171
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I + LG ++ TE + V RH ++ + +HDI LLKL++ S T +V
Sbjct: 51 ITVTLGAHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGT 107
Query: 243 ICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
+ P N P G+M V GWGRT + EV++ ++ P C +
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR 158
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 503 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 562
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 563 YGQTIRPICLP------------------------------------CTEGTTRAL---- 582
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 583 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 641
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 642 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 682
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 683 RSRFIQVGVISWGV 696
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 463 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 512
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 513 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 572
Query: 143 P 143
P
Sbjct: 573 P 573
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 287 QCRAMKYKPSRITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVG 346
Q R KY S + +++ E S P S +F P G+M V G
Sbjct: 77 QFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-------VPPGRMCRVAG 129
Query: 347 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGG 404
WGRT + EV++ ++ P C + + LC G R + +GDSGG
Sbjct: 130 WGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL---QLCVGNPRKTKSAFKGDSGG 186
Query: 405 PLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
PL+ V + GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 187 PLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 226
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + N CG LI ++VLTAAHC R I + LG
Sbjct: 3 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ TE + V RH ++ + +HDI LLKL++ S T +V LP
Sbjct: 59 AHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPFP 113
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-------LGDYDQSVTTET 198
S+++ V G M CR A G + GSD L K+R++ D+D ++
Sbjct: 114 SQFNFVPPGRM-CRV-AGWGRTGVLKPGSDT-LQEVKLRLMDPQACSHFRDFDHNLQLCV 170
Query: 199 AEP 201
P
Sbjct: 171 GNP 173
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I + LG ++ TE + V RH ++ + +HDI LLKL++ S T +V
Sbjct: 53 ITVTLGAHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGT 109
Query: 243 ICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
+ P N P G+M V GWGRT + EV++ ++ P C +
Sbjct: 110 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR 160
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 454 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 503
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 504 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 563
Query: 143 P 143
P
Sbjct: 564 P 564
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 494 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 553
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 554 YGQTIRPICLP------------------------------------CTEGTTRAL---- 573
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 574 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 632
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 633 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 673
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 674 RSRFIQVGVISWGV 687
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 36 TGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSV 91
T +K PW A++ G+ C ++++E +VLTAAHC + D + S+
Sbjct: 473 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHC----------FTVDDKEHSI 522
Query: 92 TTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVSFTKSVRPICL 142
+ ++ H ++++N Y++D+AL+KL+ + + +++RPICL
Sbjct: 523 KVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 582
Query: 143 P 143
P
Sbjct: 583 P 583
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 94/254 (37%), Gaps = 74/254 (29%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---------YNHDIALLKLRKPVS 235
+ D + S+ + ++ H ++++N Y++D+AL+KL+ +
Sbjct: 513 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 572
Query: 236 FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
+ +++RPICLP + G RA+
Sbjct: 573 YGQTIRPICLP------------------------------------CTEGTTRAL---- 592
Query: 296 SRITPNMLCAG-RGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGG 354
R+ P C + E+ QD+ +E I K G+ + + G
Sbjct: 593 -RLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGY 651
Query: 355 SLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIIND 410
+ EV +TP LC G + ++C+GDSGGPLI++
Sbjct: 652 DKVKDISEV-------------------VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK 692
Query: 411 VGRYELVGIVSWGV 424
R+ VG++SWGV
Sbjct: 693 RSRFIQVGVISWGV 706
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + N CG LI ++VLTAAHC R I + LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ TE + V RH ++ + +HDI LLKL++ S T +V LP
Sbjct: 57 AHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPFP 111
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-------LGDYDQSVTTET 198
S+++ V G M CR A G + GSD L K+R++ D+D ++
Sbjct: 112 SQFNFVPPGRM-CRV-AGWGRTGVLKPGSDT-LQEVKLRLMDPQACSHFRDFDHNLQLCV 168
Query: 199 AEP 201
P
Sbjct: 169 GNP 171
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 287 QCRAMKYKPSRITPNMLCAGRGEMDSCQDLAPRRPTESHLHFHFLSTDIDPSGKMGTVVG 346
Q R KY S + +++ E S P S +F P G+M V G
Sbjct: 75 QFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF-------VPPGRMCRVAG 127
Query: 347 WGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQGDSGG 404
WGRT + EV++ ++ P C + + LC G R + +GDSGG
Sbjct: 128 WGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL---QLCVGNPRKTKSAFKGDSGG 184
Query: 405 PLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
PL+ + GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 185 PLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQILQ 224
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I + LG ++ TE + V RH ++ + +HDI LLKL++ S T +V
Sbjct: 51 ITVTLGAHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGT 107
Query: 243 ICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
+ P N P G+M V GWGRT + EV++ ++ P C +
Sbjct: 108 LPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR 158
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMD--SCQGD 401
V GWG+ + G EV++ + C + +++ S N +C G ++ S +GD
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCES-QFQSSYNRANEICVGDSKIKGASFRGD 183
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
SGGPL+ + GIVS+G G P V+TRV ++SW+K+ MK
Sbjct: 184 SGGPLVC----KRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK 226
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A + CG L+ + +VLTAAHC K + + LG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC----KGRSMTVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ ET + + V+ + H ++ ++ ++DI LLKL + T++VRP+ LP
Sbjct: 57 AHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLP 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+ LG ++ ET + + V+ + H ++ ++ ++DI LLKL + T++VRP+
Sbjct: 53 VTLGAHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 245 LPPDN--IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM 302
LP N + P G V GWG+ + G EV++ + C + +++ S N
Sbjct: 110 LPRRNAHVKP-GDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCES-QFQSSYNRANE 167
Query: 303 LCAGRGEM 310
+C G ++
Sbjct: 168 ICVGDSKI 175
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
P G+M V GWGRT + EV++ ++ P C + + LC G R
Sbjct: 118 PPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNL---QLCVGNPRKT 174
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ +GDSGGPL+ + GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 175 KSAFKGDSGGPLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHYQPWINQILQ 224
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + N CG LI ++VLTAAHC R I + LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ TE + V RH ++ + +HDI LLKL++ S T +V LP
Sbjct: 57 AHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVG--TLPFP 111
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-------LGDYDQSVTTET 198
S+ + V G M CR A G + GSD L K+R++ D+D ++
Sbjct: 112 SQKNFVPPGRM-CRV-AGWGRTGVLKPGSDT-LQEVKLRLMDPQACSHFRDFDHNLQLCV 168
Query: 199 AEP 201
P
Sbjct: 169 GNP 171
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 242
I + LG ++ TE + V RH ++ + +HDI LLKL++ S T +V
Sbjct: 51 ITVTLGAHN---ITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGT 107
Query: 243 ICLPPD-NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
+ P N P G+M V GWGRT + EV++ ++ P C +
Sbjct: 108 LPFPSQKNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR 158
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 344 VVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMD--SCQGD 401
V GWG+ + G EV++ + C + +++ S N +C G ++ S + D
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCES-QFQSSYNRANEICVGDSKIKGASFEED 183
Query: 402 SGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
SGGPL+ + GIVS+G G P V+TRV ++SW+K+ MK
Sbjct: 184 SGGPLVC----KRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK 226
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A + CG L+ + +VLTAAHC K + + LG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHC----KGRSMTVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
++ ET + + V+ + H ++ ++ ++DI LLKL + T++VRP+ LP
Sbjct: 57 AHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLP 111
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 185 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPIC 244
+ LG ++ ET + + V+ + H ++ ++ ++DI LLKL + T++VRP+
Sbjct: 53 VTLGAHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 245 LPPDN--IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM 302
LP N + P G V GWG+ + G EV++ + C + +++ S N
Sbjct: 110 LPRRNAHVKP-GDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCES-QFQSSYNRANE 167
Query: 303 LCAGRGEM 310
+C G ++
Sbjct: 168 ICVGDSKI 175
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEM- 395
P G++ VGWGRT+ + EV++ IL P C+ ++ P LC G +
Sbjct: 118 PPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACK--HFEDFHQEPQ-LCVGNPKKI 174
Query: 396 -DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDT 452
+ +GDSGGPL+ + + GI S+ + +P P V+TR++ Y W+ + +++
Sbjct: 175 RNVYKGDSGGPLLCAGIAQ----GIASYVLRNAKP--PSVFTRISHYRPWINKILREN 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 183 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV-- 240
I ++LG +++ V +T + V H +D +DI LLKL++ + T V
Sbjct: 51 ITVLLGAHNKKVKEDTWQKL---EVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGT 107
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
PI ++I P G++ VGWGRT+ + EV++ IL P C+ +
Sbjct: 108 LPISAKSNSI-PPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFE 158
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGNFH---CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + H C LI ++V+TAAHC R I ++LG
Sbjct: 1 IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAGR----SITVLLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
+++ V +T + V H +D +DI LLKL++ + T V
Sbjct: 57 AHNKKVKEDTWQKL---EVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGV 105
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG+ + + K PW ++ D CG S++ ++V+TAA CV K S I I Y
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISI---HYGS 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSF-TKSVRPICLP 143
S T M + + + H NNY A+++ P+ K+ + I LP
Sbjct: 58 SYRTTKGTSVMAKKIYIVRYHPLTMQNNY----AVIETEMPIKLDDKTTKKIELP 108
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDS-CQGD 401
TV GWG+++ T L+ ++ A +Y P I + +C + S C GD
Sbjct: 124 TVSGWGQSNTD----TVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKSPCFGD 179
Query: 402 SGGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRN 448
SGGP +++D + L+G+VS+ G GC G P ++RV Y+ W+++N
Sbjct: 180 SGGPFVLSD--KNLLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQN 225
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 55 CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD 114
CG SLI+ ++LTAAHCV + + LG Q E + I+ H F+
Sbjct: 30 CGGSLIDNKWILTAAHCVH--DAVSVVVYLGSAVQ------YEGEAVVNSERIISHSMFN 81
Query: 115 VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
+ Y +D+AL+K+ V +T +++PI LP E
Sbjct: 82 PDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEE 113
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 210 IVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD---NIDPSGKMGTVVGWGRTS 266
I+ H F+ + Y +D+AL+K+ V +T +++PI LP N TV GWG+++
Sbjct: 74 IISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSN 132
Query: 267 EGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 305
T L+ ++ A +Y P I + +C
Sbjct: 133 T----DTVILQYTYNLVIDNDRCAQEYPPGIIVESTICG 167
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 30 IVGGRPTGVNKYPWVARL--VYDGNFH--CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + + P++A L V + CG LI+ +VLTAAHC K +I ++LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHC----KGREITVILG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+D V + ++ I+ + V N HDI LLKL K V T +V + LP
Sbjct: 57 AHD--VRKRESTQQKIKVEKQIIHESYNSVPNL-HDIMLLKLEKKVELTPAVNVVPLPSP 113
Query: 146 SEY 148
S++
Sbjct: 114 SDF 116
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 333 TDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGR 392
+D G M GWG+T + EV++ I+ C +Y + +C G
Sbjct: 114 SDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKF---QVCVGS 170
Query: 393 GEM--DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
+ GDSGGPL+ V GIVS+G +P P ++TRV+ Y+ W+
Sbjct: 171 PTTLRAAFMGDSGGPLLCAGVAH----GIVSYGHPDAKP--PAIFTRVSTYVPWI 219
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 182 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVR 241
+I ++LG +D V + ++ I+ + V N HDI LLKL K V T +V
Sbjct: 50 EITVILGAHD--VRKRESTQQKIKVEKQIIHESYNSVPNL-HDIMLLKLEKKVELTPAVN 106
Query: 242 PICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKY 293
+ LP P + G M GWG+T + EV++ I+ C +Y
Sbjct: 107 VVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY 159
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 388 LCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSW 444
LCAG G D+C GDSGGPLI N G+++ GIVS+G CG+ PGVYT+V Y W
Sbjct: 164 LCAGILEGGKDTCGGDSGGPLICN--GQFQ--GIVSFGAHPCGQGLKPGVYTKVFDYNHW 219
Query: 445 VK 446
++
Sbjct: 220 IQ 221
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ + F C +LINE++VLTAAHC + ++ LG + +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHC----DNTNFQMKLGVHSK 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
V E + + ++ +V + DI L+KL VS ++ +
Sbjct: 57 KVLNEDEQTRNPKEKFICPNKKNDEV--LDKDIMLIKLDSRVSNSEHI 102
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 21 CGVTNQEVRIVGGRPTGVNKYPWVARLV-YDGNFHCGASLINEDYVLTAAHCVRRLKRSK 79
CGV E R + PW +L +G CG +I E++VLT A C +
Sbjct: 90 CGVLTSE-----KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNIT 144
Query: 80 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 139
++ T++ +M ++ + H +D + +D++LL+L P+ + P
Sbjct: 145 VKTYF--------NRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 196
Query: 140 ICLPP-DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDV--KLVSSKIRIVLGD 189
+C P D H ++ R L G R+G+D+ L + + +V G+
Sbjct: 197 VCTPEKDFAEHLLIP-------RTRGLLSGWARNGTDLGNSLTTRPVTLVEGE 242
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Query: 30 IVGGRPTGVNKYPWVARL-VYDGNFHCGASLINEDYVLTAAHCVR--RLKRSKIRIVLGD 86
+VGG P PW L G CG SL+ E ++LTA C + + + LG
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 87 YDQSVTTETAEPTMMRA-VSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
Q+ + EP++ R V+ +V + LLKL + V+ + V ICLPP
Sbjct: 58 LFQN--PQHGEPSLQRVPVAKMV------CGPSGSQLVLLKLERSVTLNQRVALICLPP- 108
Query: 146 SEYHTVVKGTMRCRQRAAVLAFG-TQRDGSDVKLVSSKIRIV 186
E++ V GT + + +G T+ G+D L + + ++
Sbjct: 109 -EWYVVPPGT-----KCEIAGWGETKGTGNDTVLNVALLNVI 144
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 335 IDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--R 392
+ P G + GWG T G+ + + + ++S +C +K++ R+ + +C
Sbjct: 112 VVPPGTKCEIAGWGETKGTGNDTVLNVAL-LNVISNQECN-IKHR-GRVRESEMCTEGLL 168
Query: 393 GEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ +C+GD GGPL + L GI+ C R +P V+TRV+ ++ W+ + M+
Sbjct: 169 APVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMR 226
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 224 DIALLKLRKPVSFTKSVRPICLPPD-NIDPSGKMGTVVGWGRTSEGGS 270
+ LLKL + V+ + V ICLPP+ + P G + GWG T G+
Sbjct: 85 QLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN 132
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 21 CGVTNQEVRIVGGRPTGVNKYPWVARLV-YDGNFHCGASLINEDYVLTAAHCVRRLKRSK 79
CGV E R + PW +L +G CG +I E++VLT A C +
Sbjct: 49 CGVLTSE-----KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNIT 103
Query: 80 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 139
++ T++ +M ++ + H +D + +D++LL+L P+ + P
Sbjct: 104 VKTYF--------NRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLP 155
Query: 140 ICLPP-DSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDV--KLVSSKIRIVLGD 189
+C P D H ++ R L G R+G+D+ L + + +V G+
Sbjct: 156 VCTPEKDFAEHLLIP-------RTRGLLSGWARNGTDLGNSLTTRPVTLVEGE 201
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM--LCAGRGEMDS--C 398
+V GWG T G + + L + G + ++ ++T N +CAG ++ S C
Sbjct: 119 SVYGWGYT---GLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPC 175
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
+GD GGPL+ ++G++ G GC P PG++ RV Y W+ +
Sbjct: 176 EGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV--RRLKRSKIRIVLGDY 87
+V G PT N W+ L Y CG SLI E +VLTA C R LK DY
Sbjct: 1 VVNGIPTRTN-IGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLK---------DY 50
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + ++ D+ L+KL +P V I LP
Sbjct: 51 EAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLP 106
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 343 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNM--LCAGRGEMDS--C 398
+V GWG T G + + L + G + ++ ++T N +CAG ++ S C
Sbjct: 119 SVYGWGYT---GLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPC 175
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
+GD GGPL+ ++G++ G GC P PG++ RV Y W+ +
Sbjct: 176 EGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV--RRLKRSKIRIVLGDY 87
+V G PT N W+ L Y CG SLI E +VLTA C R LK DY
Sbjct: 1 VVNGIPTRTN-IGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLK---------DY 50
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ + ++ D+ L+KL +P V I LP
Sbjct: 51 EAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLP 106
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 69/174 (39%), Gaps = 14/174 (8%)
Query: 21 CGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR-LKRSK 79
CGV N + + + PW + C +LI++ +VLTAAHC R S
Sbjct: 228 CGVGN-----MSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSL 282
Query: 80 IRIVLGD----YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
R+ +GD + + E A + + + Y DIALLKL + V +
Sbjct: 283 WRVNVGDPKSQWGKEFLIEKA--VISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 340
Query: 136 SVRPICLPPDSEYHTVVKGTM--RCRQRAAVLAFGTQRDGSDVKLVSSKIRIVL 187
RPICLP E + ++ CR L V L SK+ I L
Sbjct: 341 HARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINL 394
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 383 ITPNMLCAGRGEMDS-CQGDSGGPLIINDVGRYELVGIVSWGV 424
+T LC+G E +S C+G+SGG + + R+ VG+VSWG+
Sbjct: 424 VTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGL 466
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP 246
Y DIALLKL + V + RPICLP
Sbjct: 323 YGDDIALLKLAQKVKMSTHARPICLP 348
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 21 CGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR-LKRSK 79
CGV N + + + PW + C +LI++ +VLTAAHC R S
Sbjct: 220 CGVGN-----MSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSL 274
Query: 80 IRIVLGD----YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
R+ +GD + + E A + + + Y DIALLKL + V +
Sbjct: 275 WRVNVGDPKSQWGKEFLIEKA--VISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMST 332
Query: 136 SVRPICLP 143
RPICLP
Sbjct: 333 HARPICLP 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 383 ITPNMLCAGRGEMDS-CQGDSGGPLIINDVGRYELVGIVSWGV 424
+T LC+G E +S C+G+SGG + + R+ VG+VSWG+
Sbjct: 416 VTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGL 458
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 221 YNHDIALLKLRKPVSFTKSVRPICLP 246
Y DIALLKL + V + RPICLP
Sbjct: 315 YGDDIALLKLAQKVKMSTHARPICLP 340
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S EPT + +D N +DI +L+L + +V+ LP
Sbjct: 61 S----RREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 345 VGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGG 404
+GWG +A+ E+ V +++ CR R L GR + C GDSG
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVTS-LCR-------RSNVCTLVRGR-QAGVCFGDSGS 175
Query: 405 PLIINDVGRYELVGIVSW-GVGCGRPGYPGVYTRVNRYLSWV 445
PL+ N + + GI S+ GC YP + V ++++W+
Sbjct: 176 PLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S EPT + +D N +DI +L+L + +V+ LP
Sbjct: 61 S----RREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 345 VGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGG 404
+GWG +A+ E+ V +++ CR R L GR + C GD G
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVTS-LCR-------RSNVCTLVRGR-QAGVCFGDXGS 175
Query: 405 PLIINDVGRYELVGIVSW-GVGCGRPGYPGVYTRVNRYLSWV 445
PL+ N + + GI S+ GC YP + V ++++W+
Sbjct: 176 PLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S EPT + +D N +DI +L+L + +V+ LP
Sbjct: 61 S----RREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 345 VGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGG 404
+GWG +A+ E+ V +++ CR R L GR + C GDSG
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVTS-LCR-------RSNVCTLVRGR-QAGVCFGDSGS 175
Query: 405 PLIINDVGRYELVGIVSW-GVGCGRPGYPGVYTRVNRYLSWV 445
PL+ N + + GI S+ GC YP + V ++++W+
Sbjct: 176 PLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S EPT + +D N +DI +L+L + +V+ LP
Sbjct: 61 S----RREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 345 VGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGG 404
+GWG +A+ E+ V +++ CR R L GR + C GDSG
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVTS-LCR-------RSNVCTLVRGR-QAGVCFGDSGS 175
Query: 405 PLIINDVGRYELVGIVSW-GVGCGRPGYPGVYTRVNRYLSWV 445
PL+ N + + GI S+ GC YP + V ++++W+
Sbjct: 176 PLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S EPT + +D N +DI +L+L + +V+ LP
Sbjct: 61 S----RREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR 114
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 345 VGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGG 404
+GWG +A+ E+ V +++ CR R L GR + C GDSG
Sbjct: 125 MGWGLLGRNRGIASVLQELNVTVVTS-LCR-------RSNVCTLVRGR-QAGVCFGDSGS 175
Query: 405 PLIINDVGRYELVGIVSW-GVGCGRPGYPGVYTRVNRYLSWV 445
PL+ N + + GI S+ GC YP + V ++++W+
Sbjct: 176 PLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWI 213
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 220 NYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPS----GKMGTVVGWGRTSE 267
N + DIAL+KL+KPV+F+ + P+CLP S G G V GWG E
Sbjct: 22 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKE 73
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 117 NYNHDIALLKLRKPVSFTKSVRPICLP 143
N + DIAL+KL+KPV+F+ + P+CLP
Sbjct: 22 NLDRDIALMKLKKPVAFSDYIHPVCLP 48
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization,
Patterson Search, Structure Determination, Refinement,
Structure And Comparison With Its Components And With
The Bovine Trypsin- Pancreatic Trypsin Inhibitor
Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR N +PW + + +F CG L+N +VLTAAHC K + LG ++
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC----KNDNYEVWLGRHNL 56
Query: 90 SVTTETAE 97
TA+
Sbjct: 57 FENENTAQ 64
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 32 GGRPTGVNKYPW-VARLVYDG--NFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
GG T + + PW VA Y G + CG +++++ +VLTAAHCV K I I +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
++P + S R + +DIA+L+L +P+ PD E+
Sbjct: 62 LWEDPGKSDPYVSHVYLSFYRQETME-----NDIAILELSRPLKLDGLKSKPAKLPDIEF 116
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 364 QVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWG 423
Q+ ++ +CR KY P ++ + CA + + GD+G P + D LVG+ ++
Sbjct: 146 QLTVVDLDECRT-KYGPIFLSLQVFCAQKVGVSLESGDAGDPTVQQDT----LVGVAAYF 200
Query: 424 VGCGRP-GYPGVYTRVNRYLSWVKRNMK 450
RP G P V+T+V Y+SW++ +K
Sbjct: 201 --PKRPEGAPEVFTKVGSYVSWIQDIIK 226
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVR 73
IVGG N P+ L G+ CG SLIN +V++AAHC +
Sbjct: 1 IVGGYTCAANSIPYQVSL-NSGSHFCGGSLINSQWVVSAAHCYK 43
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 1 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 57
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRT 265
+ L P + +G + GWG T
Sbjct: 58 ATVSL-PRSCAAAGTECLISGWGNT 81
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 78 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 137
S+I++ LG+++ V E E + A I+ H +F+ N ++DI L+KL P + V
Sbjct: 1 SRIQVRLGEHNIDVL-EGNEQFINAA--KIITHPNFNGNTLDNDIMLIKLSSPATLNSRV 57
Query: 138 RPICLP 143
+ LP
Sbjct: 58 ATVSLP 63
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDG--NFHCGASLINEDYVLTAAHCV 72
IV G + PW L CGASLI++ +VLTAAHC+
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45
>pdb|2FOM|B Chain B, Dengue Virus Ns2bNS3 PROTEASE
Length = 185
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 359 EALEVQVPILSPGQC-RAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLI 407
E EVQV L PG+ RA++ KP N G +D G SG P++
Sbjct: 91 EGEEVQVLALEPGKNPRAVQTKPGLFKTNTGTIGAVSLDFSPGTSGSPIV 140
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 257 GTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQDL 316
GT + + + G +A + Q PI++ C K RI+P + CAG G +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCA----KLHRISPKIWCAGAGTAADTE-- 82
Query: 317 APRRPTESHLHFHFLSTDIDP 337
A + S++ H L T +P
Sbjct: 83 AVTQLIGSNIELHSLYTSREP 103
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 258 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQDLA 317
T+VG + + G +A + Q PI++ C K RI+P + CAG G + A
Sbjct: 2 TIVGV-KFNNGVVIAADTRSTQGPIVADKNCA----KLHRISPKIWCAGAGTAADTE--A 54
Query: 318 PRRPTESHLHFHFLSTDIDP 337
+ S++ H L T +P
Sbjct: 55 VTQLIGSNIELHSLYTSREP 74
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 258 TVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQDLA 317
T+VG + + G +A + Q PI++ C K RI+P + CAG G + A
Sbjct: 2 TIVGV-KFNNGVVIAADTRSTQGPIVADKNCA----KLHRISPKIWCAGAGTAADTE--A 54
Query: 318 PRRPTESHLHFHFLSTDIDP 337
+ S++ H L T +P
Sbjct: 55 VTQLIGSNIELHSLYTSREP 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,373,182
Number of Sequences: 62578
Number of extensions: 607141
Number of successful extensions: 3292
Number of sequences better than 100.0: 360
Number of HSP's better than 100.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1082
Number of HSP's gapped (non-prelim): 1025
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)