RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6524
(457 letters)
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 188 bits (481), Expect = 1e-57
Identities = 50/129 (38%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+ + K G V G+GRT E G +T ++VP + C+ IT NM CA
Sbjct: 114 WAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS--SFIITQNMFCA 171
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G + D+CQGDSGGP + Y + GIVSWG GC R G G+YT+V +L W+ R+
Sbjct: 172 GYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231
Query: 449 MKDTCLCVS 457
MK L +
Sbjct: 232 MKTRGLPKA 240
Score = 160 bits (408), Expect = 1e-46
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRNTEQEEGG---EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLP----PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
V P CLP ++ + K G V G+GRT E G +T ++VP + C+
Sbjct: 104 VAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS--SS 161
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
IT NM CAG + D+CQ
Sbjct: 162 FIITQNMFCAGYDTKQEDACQ 182
Score = 154 bits (392), Expect = 2e-44
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 30 IVGGRPTGVNKYPWVARLV-YDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG+ + PW A L+ + CG ++++E Y+LTAAHC+ + + ++ +GD +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
+ V +++H F Y+ DIA+L+L+ P++F +V P CLP
Sbjct: 59 TEQEEGG---EAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWA 115
Query: 149 HTVVKGTMRC 158
+ +
Sbjct: 116 ESTLMTQKTG 125
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 185 bits (471), Expect = 4e-56
Identities = 50/122 (40%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 333 TDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG- 391
T+I G V GWGR G A ++VP++ C + IT NM CAG
Sbjct: 116 TNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCL--RSTKFTITNNMFCAGF 173
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
G DSCQGDSGGP + G L GI+SWG C G G+YT+V+RY++W+K K
Sbjct: 174 HEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233
Query: 451 DT 452
T
Sbjct: 234 LT 235
Score = 156 bits (398), Expect = 2e-45
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG ++PW L + CG S++NE +++TAAHCV KI +V G+++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNI 58
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
T T R V I+ H +F+ +N YNHDIALL+L +P+ V PIC+
Sbjct: 59 EETEHT---EQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEY 115
Query: 148 YHTVVKGTM 156
+ +K
Sbjct: 116 TNIFLKFGS 124
Score = 156 bits (396), Expect = 4e-45
Identities = 49/142 (34%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD--VNNYNHDIALLKLRKPVSFT 237
KI +V G+++ T T R V I+ H +F+ +N YNHDIALL+L +P+
Sbjct: 46 GVKITVVAGEHNIEETEHT---EQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN 102
Query: 238 KSVRPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK 294
V PIC+ G V GWGR G A ++VP++ C +
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCL--RST 160
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
IT NM CAG G DSCQ
Sbjct: 161 KFTITNNMFCAGFHEGGRDSCQ 182
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 183 bits (467), Expect = 1e-55
Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
++T + TV GWG EGGS L+ VP +S CR+ + M+CA
Sbjct: 101 IATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVANEMICA 159
Query: 391 G--RGEMDSCQGDSGGPLIIND-VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G + D+CQGDSGGP+ D + VGIVSWG GC R G GVYT V+ + S +
Sbjct: 160 GYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219
Query: 448 NMK 450
+
Sbjct: 220 AAR 222
Score = 150 bits (382), Expect = 4e-43
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+ I G D ++ + + +++ F Y D AL+KL +P++
Sbjct: 46 TSITATGGVVDLQSSSA-----VKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ---- 96
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
P + TV GWG EGGS L+ VP +S CR+ +
Sbjct: 97 -PTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVAN 154
Query: 301 NMLCAG--RGEMDSCQ 314
M+CAG + D+CQ
Sbjct: 155 EMICAGYDTKQEDTCQ 170
Score = 135 bits (341), Expect = 3e-37
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLK-RSKIRIVLGDYD 88
+VGG ++P++ RL + CG +L +D VLTAAHCV + I G D
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
++ + + +++ F Y D AL+KL +P++ P +
Sbjct: 57 LQSSSA-----VKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIATTT 105
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 182 bits (465), Expect = 4e-55
Identities = 58/116 (50%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 336 DPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
+ V GWG TSEGG+ +V VP++S CRA Y I +M+CAG G
Sbjct: 122 HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRAD-YGADEILDSMICAGVPEG 180
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
DSCQGDSGGPL +D G L GIVSWG GC RPGYPGVYT V+ ++ W+K N
Sbjct: 181 GKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236
Score = 161 bits (411), Expect = 3e-47
Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S ++IV G+ D SV + + VS I+ H +FD N ++DI+LLKL ++F +V
Sbjct: 56 SGLQIVAGELDMSVNEGS---EQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNV 112
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
PI LP + V GWG TSEGG+ +V VP++S CRA Y I
Sbjct: 113 APIALPEQG-HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRAD-YGADEILD 170
Query: 301 NMLCAG--RGEMDSCQ 314
+M+CAG G DSCQ
Sbjct: 171 SMICAGVPEGGKDSCQ 186
Score = 149 bits (379), Expect = 1e-42
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 30 IVGGRPTGVNKYPWVARL----VYDGNFHCGASLINEDYVLTAAHCV---RRLKRSKIRI 82
IVGG + ++P+ + CGAS+ NE+Y +TA HCV S ++I
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
V G+ D SV + + VS I+ H +FD N ++DI+LLKL ++F +V PI L
Sbjct: 61 VAGELDMSVNEGS---EQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117
Query: 143 PPDSE 147
P
Sbjct: 118 PEQGH 122
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 180 bits (458), Expect = 3e-54
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
P G+ ++ GWG G+ A E VP+LS +C+ IT NM+CAG G
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ-MPEYNITENMICAGYEEGG 179
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+DSCQGDSGGPL+ + R+ L G+ S+G C P PGVY RV+R+ W++ +
Sbjct: 180 IDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFL 234
Score = 160 bits (407), Expect = 9e-47
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
SK +LG + +S T T+ R + IV + H++ ++DIA++ L V++T +
Sbjct: 51 SKWTAILGLHMKSNLTSP--QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYI 108
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+PI LP +N P G+ ++ GWG G+ A E VP+LS +C+ IT
Sbjct: 109 QPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ-MPEYNIT 167
Query: 300 PNMLCAG--RGEMDSCQ 314
NM+CAG G +DSCQ
Sbjct: 168 ENMICAGYEEGGIDSCQ 184
Score = 159 bits (404), Expect = 3e-46
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV--RRLKRSKIRIVLGDY 87
IVGG +PWV L YD CGASL++ D++++AAHCV R L+ SK +LG +
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
+S T T+ R + IV + H++ ++DIA++ L V++T ++PI LP ++
Sbjct: 61 MKSNLTSP--QTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEEN- 117
Query: 148 YHTVVKGTM 156
G
Sbjct: 118 -QVFPPGRN 125
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 179 bits (456), Expect = 1e-53
Identities = 48/119 (40%), Positives = 65/119 (54%), Gaps = 5/119 (4%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK---PSRITPNMLCAG-- 391
+ V GWG+ + G+ A E + + VP L C K IT M CAG
Sbjct: 122 AFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYS 181
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
G DSC+GDSGGP + G + L GIVSWG GC G+ GVYTRV++Y+ W+++ M+
Sbjct: 182 DGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR 240
Score = 158 bits (403), Expect = 6e-46
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDYD 88
IVGG+ + PW L+ +G CG +LIN +V++AAHC ++K + VLG++D
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
S R V+ ++ + NHDIALL+L +PV T V P+CLP +
Sbjct: 61 LSEHDGD---EQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFS 117
Query: 149 HTVVKGTMRC 158
+
Sbjct: 118 ERTLAFVRFS 127
Score = 157 bits (398), Expect = 3e-45
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+ VLG++D S R V+ ++ + NHDIALL+L +PV T V
Sbjct: 50 RNLIAVLGEHDLSEHDGD---EQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHV 106
Query: 241 RPICLPPDNID----PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK-- 294
P+CLP + V GWG+ + G+ A E + + VP L C K
Sbjct: 107 VPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVG 166
Query: 295 -PSRITPNMLCAG--RGEMDSCQ 314
IT M CAG G DSC+
Sbjct: 167 DSPNITEYMFCAGYSDGSKDSCK 189
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 178 bits (453), Expect = 2e-53
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
G + G+G+ + L E L V ++S +C+ Y S +T MLCA +
Sbjct: 130 QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQW 189
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
+ DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 190 KTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE 247
Score = 145 bits (367), Expect = 1e-40
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN--YNHDIALLKLRKP----V 234
+ LG + T+ M V +++ H+ + + +++DIALLK+R
Sbjct: 55 EDYIVYLGRSRLNSNTQ---GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCA 111
Query: 235 SFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMK 292
+++++ I LP D G + G+G+ + L E L V ++S +C+
Sbjct: 112 QPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
Y S +T MLCA + + DSCQ
Sbjct: 172 YYGSEVTTKMLCAADPQWKTDSCQ 195
Score = 128 bits (324), Expect = 2e-34
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 30 IVGGRPTGVNKYPWVARLVY-----DGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIV 83
I+GG T + PW A + + CG SLI+ +V++A HC + +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 84 LGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN--YNHDIALLKLRKP----VSFTKSV 137
LG + T + M V +++ H+ + + +++DIALLK+R ++++
Sbjct: 61 LGRSRLNSNT---QGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTI 117
Query: 138 RPICLPPDSEYHTVVKGTM 156
+ I LP + GT
Sbjct: 118 QTISLPSMY--NDPQFGTS 134
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 176 bits (449), Expect = 1e-52
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG---- 391
P + G+G+ +E L E V + +C + +T NMLCAG
Sbjct: 129 PDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRS 188
Query: 392 ----RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
D+CQGDSGGPL+ + GR LVGI+SWG+GCG+ PGVYT+V YL W++
Sbjct: 189 GGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRD 248
Query: 448 NMK 450
NM+
Sbjct: 249 NMR 251
Score = 150 bits (380), Expect = 1e-42
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKP----VSF 236
+ ++LG + V E V + H+ FD + Y++DIALL+L+
Sbjct: 56 HHLTVILGRTYRVVPGE---EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQE 112
Query: 237 TKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK 294
+ VR +CLPP ++ P + G+G+ +E L E V + +C +
Sbjct: 113 SSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLL 172
Query: 295 PSRITPNMLCAG--------RGEMDSCQ 314
+T NMLCAG D+CQ
Sbjct: 173 NRTVTDNMLCAGDTRSGGPQANLHDACQ 200
Score = 137 bits (348), Expect = 6e-38
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN------FHCGASLINEDYVLTAAHCV-RRLKRSKIRI 82
I GG + +PW A + F CG LI+ ++L+AAHC R + +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKP----VSFTKSVR 138
+LG + V E V + H+ FD + Y++DIALL+L+ + VR
Sbjct: 61 ILGRTYRVVPGE---EEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVR 117
Query: 139 PICLPPDSEYHTVVKGTM 156
+CLPP + T
Sbjct: 118 TVCLPPAD--LQLPDWTE 133
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 177 bits (450), Expect = 1e-52
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
G + G+G+ + L E L V ++S +C+ Y S +T MLCA +
Sbjct: 153 QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQW 212
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKDTC 453
+ DSCQGDSGGPL+ + GR L GIVSWG GC PGVYTRV+ +L W++ + K+
Sbjct: 213 KTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEEN 272
Score = 143 bits (364), Expect = 5e-40
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKP----V 234
+ LG + T+ M V +++ H+ + + +++DIALLK+R
Sbjct: 78 EDYIVYLGRSRLNSNTQ---GEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCA 134
Query: 235 SFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMK 292
+++++ ICLP D G + G+G+ + L E L V ++S +C+
Sbjct: 135 QPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPH 194
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
Y S +T MLCA + + DSCQ
Sbjct: 195 YYGSEVTTKMLCAADPQWKTDSCQ 218
Score = 134 bits (339), Expect = 2e-36
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 16 TCLLECGV--TNQEVRIVGGRPTGVNKYPWVARLVY-----DGNFHCGASLINEDYVLTA 68
+CG +I+GG T + PW A + + CG SL++ +V++A
Sbjct: 8 ELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISA 67
Query: 69 AHCVRRLKR-SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALL 125
HC + + LG + T + M V +++ H+ + + +++DIALL
Sbjct: 68 THCFIDYPKKEDYIVYLGRSRLNSNT---QGEMKFEVENLILHKDYSADTLAHHNDIALL 124
Query: 126 KLRKP----VSFTKSVRPICLPPDSEYHTVVKGTM 156
K+R +++++ ICLP + GT
Sbjct: 125 KIRSKEGRCAQPSRTIQTICLPSMY--NDPQFGTS 157
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 175 bits (446), Expect = 2e-52
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
V GWG + E G + +V +P+++ +C+ Y+ +IT M+CAG G
Sbjct: 122 TIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKITQRMVCAGYKEGG 180
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMKD 451
D+C+GDSGGPL+ G + LVGI SWG GC R PGVYT+V Y+ W+ +
Sbjct: 181 KDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS 237
Score = 151 bits (384), Expect = 2e-43
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
RI G + S T+ T + I+ H+++ V+ NHDIAL+KL+ P+ +T+
Sbjct: 52 QDVWRIYSGILELSDITK---DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEF 108
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
+PI LP V GWG + E G + +V +P+++ +C+ Y+ +I
Sbjct: 109 QKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR-YQDYKI 167
Query: 299 TPNMLCAG--RGEMDSCQ 314
T M+CAG G D+C+
Sbjct: 168 TQRMVCAGYKEGGKDACK 185
Score = 143 bits (364), Expect = 2e-40
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYD---GNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLG 85
IVGG + ++PW L CG SLI +VLTAAHC L RI G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+ S T+ T + I+ H+++ V+ NHDIAL+KL+ P+ +T+ +PI LP
Sbjct: 61 ILELSDITK---DTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSK 117
Query: 146 SEYHTVVKGTM 156
T T
Sbjct: 118 G--DTSTIYTN 126
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 174 bits (443), Expect = 3e-52
Identities = 56/115 (48%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
+G TV GWG TSEGGS L +V VPI+S CRA Y S IT M CAG G
Sbjct: 113 VAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ-YGTSAITNQMFCAGVSSG 171
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
DSCQGDSGGP++ L+G VSWG GC RP Y GVY V S++
Sbjct: 172 GKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223
Score = 150 bits (381), Expect = 4e-43
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S +I G ++ + ++SS+ H + + N+D+A+LKL + ++
Sbjct: 49 SGFQIRAGSLSRT------SGGITSSLSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNI 100
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRI 298
L D +G TV GWG TSEGGS L +V VPI+S CRA Y S I
Sbjct: 101 GYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ-YGTSAI 159
Query: 299 TPNMLCAG--RGEMDSCQ 314
T M CAG G DSCQ
Sbjct: 160 TNQMFCAGVSSGGKDSCQ 177
Score = 150 bits (381), Expect = 5e-43
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG +P++ + +G CG SL+N + VLTAAHCV +S +I G +
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ + ++SS+ H + + N+D+A+LKL + ++ L
Sbjct: 61 T------SGGITSSLSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASG--S 110
Query: 150 TVVKGTM 156
V G+
Sbjct: 111 DPVAGSS 117
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 175 bits (445), Expect = 5e-52
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
P+G + GWG E S + +L E VP+++ +C + + + I+PNMLCAG
Sbjct: 123 PAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC 182
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ D+CQGDSGGPL G L GI+SWG GCGR PGVYTRV Y+ W+ ++
Sbjct: 183 KSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 239
Score = 144 bits (366), Expect = 1e-40
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN-YNHDIALLKLRKP----VS 235
+ +VLG + + TT+ T + + + + V N +HD+ L++L+K +
Sbjct: 49 DSVSVVLGQHFFNRTTD---VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 105
Query: 236 FTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKY 293
++ V+PICLP P+G + GWG E S + +L E VP+++ +C + +
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 294 KPSRITPNMLCAG--RGEMDSCQ 314
+ I+PNMLCAG + D+CQ
Sbjct: 166 YGADISPNMLCAGYFDCKSDACQ 188
Score = 133 bits (338), Expect = 1e-36
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-RRLKRSKIRIVLGDYD 88
I+GG + +PW+A + Y G+ C SL++ +V++AAHC R + +VLG +
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNN-YNHDIALLKLRKP----VSFTKSVRPICLP 143
+ TT + T + + + + V N +HD+ L++L+K + ++ V+PICLP
Sbjct: 60 FNRTT---DVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLP 116
Query: 144 PDSE 147
Sbjct: 117 EPGS 120
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 174 bits (443), Expect = 5e-52
Identities = 45/116 (38%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
G + V G+G G + QV ++ C + ITP MLCAG G+
Sbjct: 115 QPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGK 174
Query: 395 MDSCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
D+CQGDSGGPL+ +D + L GIVSWG C +P PGVYTRV W+
Sbjct: 175 TDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230
Score = 148 bits (376), Expect = 4e-42
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
++ G + M R + I+ H + ++++DI+L +L PV +T +V
Sbjct: 50 ARWTASFGVTIKP-------SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAV 102
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+CLP + + G + V G+G G + QV ++ C + IT
Sbjct: 103 HRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAIT 162
Query: 300 PNMLCAG--RGEMDSCQ 314
P MLCAG G+ D+CQ
Sbjct: 163 PRMLCAGSLEGKTDACQ 179
Score = 145 bits (368), Expect = 5e-41
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDYD 88
IVGG ++PW A L +DG+ CGA+LIN ++++AAHC K ++ G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
+ M R + I+ H + ++++DI+L +L PV +T +V +CLP S
Sbjct: 61 KP-------SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDAS-- 111
Query: 149 HTVVKGTM 156
+ G +
Sbjct: 112 YEFQPGDV 119
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 174 bits (443), Expect = 6e-52
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
V GWG + + ++P+++ +C+ Y+ +IT M+CAG G
Sbjct: 122 VIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGG 180
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+C+GDSGGPL + LVGI SWG GC + PGVYT V Y+ W+ +
Sbjct: 181 KDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236
Score = 150 bits (380), Expect = 8e-43
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+R+ G +QS E T V I+ H + + +DIALLKL V++T S
Sbjct: 53 KILRVYSGILNQSEIKE---DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ 109
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
RPI LP V GWG + + ++P+++ +C+ Y+ +IT
Sbjct: 110 RPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKIT 168
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 169 HKMICAGYREGGKDACK 185
Score = 140 bits (356), Expect = 3e-39
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLG 85
IVGG + ++PW L CG S+I ++LTAAHC ++ +R+ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+QS E T V I+ H + + +DIALLKL V++T S RPI LP
Sbjct: 61 ILNQSEIKE---DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSK 117
Query: 146 SEYHTVVKGTM 156
V T
Sbjct: 118 G--ERNVIYTD 126
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 174 bits (444), Expect = 6e-52
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 330 FLSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-----EVQVPILSPGQCRAMKYKPSRIT 384
+++ +G+ V GWG S A +++P++ +C + + ++
Sbjct: 114 LAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-M-SNMVS 171
Query: 385 PNMLCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
NMLCAG D+C+GDSGGP++ + G + LVG+VSWG GCG GVYT+V+RYL
Sbjct: 172 ENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYL 231
Query: 443 SWVKRNMKDTCLC 455
W+ +++D
Sbjct: 232 DWIHGHIRDKEAP 244
Score = 150 bits (382), Expect = 6e-43
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 17/147 (11%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
S K+ + LG+YD + + + + H ++ + ++DIALL L +P + +++
Sbjct: 47 SKKLLVRLGEYDLRRWEKW---ELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT 103
Query: 240 VRPICLPPDNID-----PSGKMGTVVGWGRTSEGGSLATEAL-----EVQVPILSPGQCR 289
+ PICLP + +G+ V GWG S A +++P++ +C
Sbjct: 104 IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECS 163
Query: 290 AMKYKPSRITPNMLCAG--RGEMDSCQ 314
+ + ++ NMLCAG D+C+
Sbjct: 164 EV-M-SNMVSENMLCAGILGDRQDACE 188
Score = 145 bits (368), Expect = 6e-41
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
++ G+ T PW L+ CGA LI+ +VLTAAHC+ K+ + LG+YD
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYD 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP 144
+ + + + H ++ + ++DIALL L +P + ++++ PICLP
Sbjct: 59 LRRWEKW---ELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPD 111
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 173 bits (441), Expect = 1e-51
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+G V G+G + Q+ ++ +CR KY P ++ + CA
Sbjct: 114 IEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRT-KYGPIFLSLQVFCAQ 172
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ + GD+G P + D LVG+ ++ G P V+T+V Y+SW++ +K
Sbjct: 173 KVGVSLESGDAGDPTVQQDT----LVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDIIK 226
Score = 151 bits (385), Expect = 1e-43
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 8/136 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT-KS 239
I I + S V + +DIA+L+L +P+
Sbjct: 51 ETIVIQYESTNLWEDPGK-----SDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLK 105
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
+P LP +G V G+G + Q+ ++ +CR KY P +
Sbjct: 106 SKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRT-KYGPIFL 164
Query: 299 TPNMLCAGRGEMDSCQ 314
+ + CA + +
Sbjct: 165 SLQVFCAQKVGVSLES 180
Score = 137 bits (347), Expect = 4e-38
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 32 GGRPTGVNKYPWVARLVY---DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
GG T + + PW + + + CG +++++ +VLTAAHCV K I I +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT-KSVRPICLPPDSE 147
S V + +DIA+L+L +P+ +P LP
Sbjct: 62 LWEDPGK-----SDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEF 116
Query: 148 YHTVVKGTM 156
G+
Sbjct: 117 --RPKTGSD 123
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 173 bits (440), Expect = 2e-51
Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
D + GWG + GG L V + I + C A+ Y I +M+CA
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIYDDMICA 172
Query: 391 ----GRGEMDSCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWV 445
G + DSCQGDSGGPL + D G + LVGIVSWG+GC GYPGVY+RV + W+
Sbjct: 173 TDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWI 231
Query: 446 KRNMKD 451
+ +
Sbjct: 232 TDTITN 237
Score = 163 bits (414), Expect = 1e-47
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+ + +V+G++D S + V SI + ++D +D++++K ++F +V
Sbjct: 51 ALVSLVVGEHDSSAAST---VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINV 107
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRIT 299
PIC P D + GWG + GG L V + I + C A+ Y I
Sbjct: 108 GPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV-YTSDTIY 166
Query: 300 PNMLCA----GRGEMDSCQ 314
+M+CA G + DSCQ
Sbjct: 167 DDMICATDNTGMTDRDSCQ 185
Score = 156 bits (397), Expect = 3e-45
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 30 IVGGRPTGVNKYPWVA--RLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
IVGG ++PW R + CG S+IN+ +V+ AAHC++ + + +V+G++
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
D S + V SI + ++D +D++++K ++F +V PIC P +
Sbjct: 61 DSSAAST---VRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAN 117
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 172 bits (438), Expect = 3e-51
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
S I P+ + GWG+TS GG L+ + +P + C + + S + M+CAG
Sbjct: 117 SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG 176
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G C GDSGGPL G Y + G+ S+ GC P V+TRV+ Y+SW+ M
Sbjct: 177 GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236
Score = 151 bits (385), Expect = 2e-43
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLRKPVSFT 237
+ R+VLG+++ + + V+S+ H ++ ++ DIALL+L S
Sbjct: 50 ARTWRVVLGEHNLNTNEG---KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLN 106
Query: 238 KSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
+V+ LPP N P+ + GWG+TS GG L+ + +P + C + + S
Sbjct: 107 SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGS 166
Query: 297 RITPNMLCAGRGEMDSCQ 314
+ M+CAG G C
Sbjct: 167 TVKTTMVCAGGGANSGCN 184
Score = 129 bits (327), Expect = 4e-35
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGGR N +PW L Y +H CG SLI + +V+TAAHCV R+VLG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLRKPVSFTKSVRPICLP 143
+++ + + V+S+ H ++ ++ DIALL+L S +V+ LP
Sbjct: 59 EHNLNTNEG---KEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALP 115
Query: 144 PDSE 147
P ++
Sbjct: 116 PSNQ 119
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 173 bits (441), Expect = 3e-51
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
P+G + GWG E S + +L E VP+++ +C + + + I+PNMLCAG
Sbjct: 158 PAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDC 217
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ D+CQGDSGGPL G L GI+SWG GCGR PGVYTRV Y+ W+ ++
Sbjct: 218 KSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274
Score = 143 bits (362), Expect = 1e-39
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 12/143 (8%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN-YNHDIALLKLRKP----VS 235
+ +VLG + + TT+ T + + + + V N +HD+ L++L+K +
Sbjct: 84 DSVSVVLGQHFFNRTTD---VTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 140
Query: 236 FTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKY 293
++ V+PICLP P+G + GWG E S + +L E VP+++ +C + +
Sbjct: 141 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 200
Query: 294 KPSRITPNMLCAG--RGEMDSCQ 314
+ I+PNMLCAG + D+CQ
Sbjct: 201 YGADISPNMLCAGYFDCKSDACQ 223
Score = 138 bits (349), Expect = 9e-38
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 20 ECGV-----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCV-R 73
CG T RI+GG + +PW+A + Y G+ C SL++ +V++AAHC
Sbjct: 21 ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSH 79
Query: 74 RLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN-YNHDIALLKLRKP-- 130
R + +VLG + + TT + T + + + + V N +HD+ L++L+K
Sbjct: 80 SPPRDSVSVVLGQHFFNRTT---DVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 136
Query: 131 --VSFTKSVRPICLPPDSE 147
+ ++ V+PICLP
Sbjct: 137 RCATRSQFVQPICLPEPGS 155
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 171 bits (435), Expect = 9e-51
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
++ + P+GK V GWG T GG+ A + ++ +++ C + P +ITP M+C G
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL-L-PQQITPRMMCVG 178
Query: 392 --RGEMDSCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G +DSCQGDSGGPL + GR G+VSWG GC + PGVYTR+ + W+K N
Sbjct: 179 FLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Query: 449 M 449
Sbjct: 239 T 239
Score = 152 bits (387), Expect = 8e-44
Identities = 47/137 (34%), Positives = 73/137 (53%), Gaps = 7/137 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
++ LG +DQS + R + I+ H F+ +++DIALL+L KP ++ V
Sbjct: 56 TQWTAFLGLHDQSQRSAP--GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMV 113
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
RPI LP + P+GK V GWG T GG+ A + ++ +++ C + P +IT
Sbjct: 114 RPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL-L-PQQIT 171
Query: 300 PNMLCAG--RGEMDSCQ 314
P M+C G G +DSCQ
Sbjct: 172 PRMMCVGFLSGGVDSCQ 188
Score = 147 bits (373), Expect = 9e-42
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKR------SKIRI 82
+VGG ++PW L G H CGASLI+ +++++AAHC + ++
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 83 VLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICL 142
LG +DQS + R + I+ H F+ +++DIALL+L KP ++ VRPI L
Sbjct: 61 FLGLHDQSQRSAP--GVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISL 118
Query: 143 PPDSEYHTVVKGTM 156
P S H G
Sbjct: 119 PDAS--HVFPAGKA 130
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 171 bits (436), Expect = 2e-50
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCR-AMKYKPSRITPNMLCA 390
+ G+ TVVGWGRT E G +T ++ VP++ QC R+ + LCA
Sbjct: 157 PNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCA 215
Query: 391 G-RGEMDSCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G DSC GDSGGPL+ ++ L G+VS+G CG G+PG+YT+V +Y W++ N
Sbjct: 216 GGEKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGN 275
Query: 449 MK 450
++
Sbjct: 276 IR 277
Score = 160 bits (408), Expect = 2e-46
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGN-----FHCGASLINEDYVLTAAHCVRR 74
+CG + +I+ G T ++PW A + Y + F CG SLIN Y++TAAHCV
Sbjct: 13 DCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAG 72
Query: 75 LKRSK----IRIVLGDYDQSVTTET--------AEPTMMRAVSSIVRHRHFDVNNYN--H 120
++ LG+++ + + + + + ++H + + + H
Sbjct: 73 RVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYH 132
Query: 121 DIALLKLRKPVSFTKSVRPICLPPDSE 147
DIAL++L + V FT +RP+CLP +E
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNE 159
Score = 145 bits (369), Expect = 9e-41
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%)
Query: 172 DGSDVKLVSSKIRIVLGDYDQSVTTET--------AEPTMMRAVSSIVRHRHFDVNNYN- 222
G +++V + ++ LG+++ + + + + + ++H + + +
Sbjct: 71 AGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDR 130
Query: 223 -HDIALLKLRKPVSFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQV 280
HDIAL++L + V FT +RP+CLP N + G+ TVVGWGRT E G +T ++ V
Sbjct: 131 YHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAV 189
Query: 281 PILSPGQCR-AMKYKPSRITPNMLCAG-RGEMDSCQ 314
P++ QC R+ + LCAG DSC
Sbjct: 190 PVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCG 225
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 170 bits (432), Expect = 3e-50
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAM--KYKPSRITPNMLC 389
+ + D +G + GWGRT +L + +P+++ QC A + I N +C
Sbjct: 117 NNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC 176
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSW----GVGCGRPGYPGVYTRVNRYLS 443
G +C GDSGGPL D G +VG+ SW G+G P YP VYTRV+ YL
Sbjct: 177 VQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG 235
Query: 444 WVKRN 448
W+ N
Sbjct: 236 WIGDN 240
Score = 156 bits (396), Expect = 5e-45
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFTK 238
+ IR++ G + QS T T V S H ++ +Y++DIA+L L +S
Sbjct: 52 NNIRVIAGLWQQSDT----SGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGG 107
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAM--KYKP 295
+++ LP +N + +G + GWGRT +L + +P+++ QC A
Sbjct: 108 NIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGG 167
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
+ I N +C G +C
Sbjct: 168 ANIWDNHICVQDPAGNTGACN 188
Score = 149 bits (379), Expect = 1e-42
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
++GG ++PW CGASL++ L+A+HCV + + IR++ G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVN--NYNHDIALLKLRKPVSFTKSVRPICLPP 144
+ QS T T V S H ++ +Y++DIA+L L +S +++ LP
Sbjct: 61 WQQSDT----SGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA 116
Query: 145 DSE 147
++
Sbjct: 117 NNN 119
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 173 bits (440), Expect = 5e-50
Identities = 51/120 (42%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
GK+ TV GWG T G A E +VPI+S C + ++I P M CAG G
Sbjct: 241 VDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGG 300
Query: 395 MDSCQGDSGGPLIINDV----GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+D+CQGDSGGP + D R+ L GIVSWG GC PGVYT+V+ + W+ + +K
Sbjct: 301 IDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
Score = 147 bits (372), Expect = 3e-40
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 3 FEKNNIISDQFKFTCLLECGVTNQEV-RIVGGRPTGVNKYPWVARLVYDGNFHCGASLIN 61
+ +F +CG V RIVGGR T + ++PW L YDG CG SL++
Sbjct: 90 ISVCDCPRGRFLAAICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLS 149
Query: 62 EDYVLTAAHCVRRLKR--SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF------ 113
D+VLTAAHC R S+ R+ G Q+ + + V ++V H +
Sbjct: 150 GDWVLTAAHCFPERNRVLSRWRVFAGAVAQA-----SPHGLQLGVQAVVYHGGYLPFRDP 204
Query: 114 DVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
+ ++DIAL+ L P+ T+ ++P+CLP +V G +
Sbjct: 205 NSEENSNDIALVHLSSPLPLTEYIQPVCLPAAG--QALVDGKI 245
Score = 145 bits (368), Expect = 1e-39
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF------DVNNYNHDIALLKLRKPV 234
S+ R+ G Q+ + + V ++V H + + ++DIAL+ L P+
Sbjct: 168 SRWRVFAGAVAQA-----SPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPL 222
Query: 235 SFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKY 293
T+ ++P+CLP GK+ TV GWG T G A E +VPI+S C +
Sbjct: 223 PLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF 282
Query: 294 KPSRITPNMLCAG--RGEMDSCQ 314
++I P M CAG G +D+CQ
Sbjct: 283 YGNQIKPKMFCAGYPEGGIDACQ 305
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 167 bits (426), Expect = 3e-49
Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL------EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+G G V GWG E + V +PI+ C+ RIT NM CA
Sbjct: 131 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-T-RIRITDNMFCA 188
Query: 391 G-----RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
G D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 189 GYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 248
Query: 444 WVKRNMK 450
W+++ +
Sbjct: 249 WIQKVID 255
Score = 152 bits (386), Expect = 2e-43
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCV------RRLKRSKIR 81
IV G + PW L CGASLI++ +VLTAAHC+ + + +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 82 IVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLKLRKPVSFTKSVRPI 140
+ +G + ++ E + + I H ++ N + DIAL+KL+KPV+F+ + P+
Sbjct: 61 VRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPV 118
Query: 141 CLPPDSEYHTVVKGTMRCR 159
CLP ++++ + R
Sbjct: 119 CLPDRETAASLLQAGYKGR 137
Score = 150 bits (382), Expect = 9e-43
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 20/161 (12%)
Query: 170 QRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALL 228
D + + + +G + ++ E + + I H ++ N + DIAL+
Sbjct: 46 LYPPWDKNFTENDLLVRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALM 103
Query: 229 KLRKPVSFTKSVRPICLPPDNID----PSGKMGTVVGWGRTSEGGSLATEAL------EV 278
KL+KPV+F+ + P+CLP +G G V GWG E + V
Sbjct: 104 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 163
Query: 279 QVPILSPGQCRAMKYKPSRITPNMLCAG-----RGEMDSCQ 314
+PI+ C+ RIT NM CAG D+C+
Sbjct: 164 NLPIVERPVCKDS-T-RIRITDNMFCAGYKPDEGKRGDACE 202
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 167 bits (424), Expect = 3e-49
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 10/129 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAM----KYKPSRITPNM 387
+ + +GT GWG T + G LA + V +PI+ +C A Y +T NM
Sbjct: 114 AESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 172
Query: 388 LCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYL 442
LCAG G DSC+GDSGG L+ D R+ + GIVSWG + CG G GVYT+V Y+
Sbjct: 173 LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYI 232
Query: 443 SWVKRNMKD 451
W++ + D
Sbjct: 233 PWIENIISD 241
Score = 148 bits (375), Expect = 6e-42
Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 23/165 (13%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR--SKIRIVLGDY 87
I GG+ +PW ++ G +L+ +++VLTAAH V K S + I +G
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+ T ++ H + + +++DIAL+KL V ++ PICLP
Sbjct: 59 KRLSPHYT-----QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKE 113
Query: 147 EYHTVVKGTMRCRQRAAVLAFGTQRDGS--------DVKLVSSKI 183
+ + +G + G D+ +V +
Sbjct: 114 AESFMRTDDI-----GTASGWGLTQRGFLARNLMYVDIPIVDHQK 153
Score = 145 bits (368), Expect = 7e-41
Identities = 43/144 (29%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVSFTKS 239
S + I +G + T ++ H + + +++DIAL+KL V +
Sbjct: 49 SALDIRMGTLKRLSPHYT-----QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSN 103
Query: 240 VRPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAM----K 292
+ PICLP + + +GT GWG T + G LA + V +PI+ +C A
Sbjct: 104 ITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPP 162
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
Y +T NMLCAG G DSC+
Sbjct: 163 YPRGSVTANMLCAGLESGGKDSCR 186
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 166 bits (424), Expect = 4e-49
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ I + + GWG T G LA + +P + C + Y S + +M+CAG
Sbjct: 117 AGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG 176
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG--VGCGRPGYPGVYTRVNRYLSWVKRN 448
G CQGDSGGPL G+Y + G+ S+ +GC P V+TRV+ Y+SW+
Sbjct: 177 GDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNV 236
Query: 449 M 449
+
Sbjct: 237 I 237
Score = 146 bits (372), Expect = 2e-41
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN--YNHDIALLKLRKPVSFT 237
R+V+G+++ + T + V IV H +++ ++ +DIALL+L + V+
Sbjct: 50 ELTFRVVVGEHNLNQNNGTEQ---YVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLN 106
Query: 238 KSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V+ LP + + GWG T G LA + +P + C + Y S
Sbjct: 107 SYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGS 166
Query: 297 RITPNMLCAG-RGEMDSCQ 314
+ +M+CAG G CQ
Sbjct: 167 TVKNSMVCAGGDGVRSGCQ 185
Score = 128 bits (325), Expect = 9e-35
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +P L Y H CG +LI +++V+TAAHCV R R+V+G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN--YNHDIALLKLRKPVSFTKSVRPICLP 143
+++ + T + V IV H +++ ++ +DIALL+L + V+ V+ LP
Sbjct: 59 EHNLNQNNGTEQ---YVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 144 PDSEYHTVVKGTM 156
+ +
Sbjct: 116 RAG--TILANNSP 126
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 166 bits (424), Expect = 4e-49
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
++D +G GWG T + + L + +P+LS C+ + ++I M+CA
Sbjct: 126 ASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY-W-GTKIKDAMICA 183
Query: 391 GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G + SC GDSGGPL+ G + LVGIVSWG PGVY RV ++WV++ +
Sbjct: 184 GASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242
Score = 145 bits (367), Expect = 9e-41
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
V++ +V G++DQ ++E ++ + ++ ++ N+DI LLKL SF++
Sbjct: 60 VTTSDVVVAGEFDQGSSSEKI---QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQ 116
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPS 296
+V +CLP + D +G GWG T + + L + +P+LS C+ + +
Sbjct: 117 TVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY-W-GT 174
Query: 297 RITPNMLCAGRGEMDSCQ 314
+I M+CAG + SC
Sbjct: 175 KIKDAMICAGASGVSSCM 192
Score = 138 bits (351), Expect = 2e-38
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 13/134 (9%)
Query: 21 CGV------TNQEVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVR 73
CGV + RIV G +PW L FH CG SLINE++V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 74 RLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSF 133
+ +V G++DQ ++E ++ + ++ ++ N+DI LLKL SF
Sbjct: 61 T---TSDVVVAGEFDQGSSSEKI---QKLKIAKVFKNSKYNSLTINNDITLLKLSTAASF 114
Query: 134 TKSVRPICLPPDSE 147
+++V +CLP S+
Sbjct: 115 SQTVSAVCLPSASD 128
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 167 bits (424), Expect = 4e-49
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ DI P+ + GWGR GG L + + +P + C + + M+CAG
Sbjct: 117 AGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG 176
Query: 392 RGEMDSCQGDSGGPLIINDV-GRYELVGIVSW--GVGCGRPGYPGVYTRVNRYLSWVKRN 448
C GDSGGPL G +++ G+ S+ GC P V+TRV+ ++ W+
Sbjct: 177 GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 236
Query: 449 MK 450
+
Sbjct: 237 IA 238
Score = 151 bits (384), Expect = 3e-43
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFT 237
S ++VLG+YD+SV E +E + + H ++ N +DIAL+KL +
Sbjct: 48 SRTYQVVLGEYDRSVL-EGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 106
Query: 238 KSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
V+ LPP P+ + GWGR GG L + + +P + C +
Sbjct: 107 DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI 166
Query: 297 RITPNMLCAGRGEMDSCQ 314
+ M+CAG C
Sbjct: 167 TVKKTMVCAGGDTRSGCN 184
Score = 121 bits (305), Expect = 6e-32
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 33 GRPTGVNKYPWVARLVYDGN---FH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
G + W L Y+ + H CG SLI D+V+TA HC+ ++VLG+YD
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYD 59
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNY--NHDIALLKLRKPVSFTKSVRPICLPPDS 146
+SV E +E + + H ++ N +DIAL+KL + V+ LPP
Sbjct: 60 RSVL-EGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAG 118
Query: 147 E 147
+
Sbjct: 119 D 119
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 168 bits (427), Expect = 5e-49
Identities = 47/128 (36%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+ V GWG E + L E +V ++ G C + ++ RI +CA
Sbjct: 126 RAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCA 185
Query: 391 G--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
G G++D+CQGDSGGPL+ D Y +VGI SWGVGC R PGVYT YL+W+
Sbjct: 186 GYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIA 245
Query: 447 RNMKDTCL 454
+ T +
Sbjct: 246 SKIGSTAV 253
Score = 150 bits (381), Expect = 2e-42
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 181 SKIRIVLGDYDQSVTT--ETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+ R++ G + T P R V I+ H + ++ +DIAL+K+ PV+
Sbjct: 56 TDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGH 115
Query: 239 SVRPICLPPDNIDP--SGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKP 295
+ P CLP P + V GWG E + L E +V ++ G C + ++
Sbjct: 116 FIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYN 175
Query: 296 SRITPNMLCAG--RGEMDSCQ 314
RI +CAG G++D+CQ
Sbjct: 176 GRIRSTNVCAGYPEGKIDTCQ 196
Score = 136 bits (344), Expect = 5e-37
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYD------GNFHCGASLINEDYVLTAAHCVRRLKR-SKIRI 82
I+GG+ +PW+ L CG SL+N ++LTAAHC R K+ + R+
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 83 VLGDYDQSVTT--ETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPI 140
+ G + T P R V I+ H + ++ +DIAL+K+ PV+ + P
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120
Query: 141 CLPPDSEYHTVVKGTMRC 158
CLP + C
Sbjct: 121 CLPQFR--AGPPRVPQTC 136
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 165 bits (419), Expect = 3e-48
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ P V GWGR G +A E + P++ C + + + M+CAG
Sbjct: 129 EGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG 188
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG--CGRPGYPGVYTRVNRYLSWVKRN 448
G + +C GDSGGPL G++++ GIVS+G G C P V+TRV+ Y+ W+ +
Sbjct: 189 GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248
Query: 449 MK 450
++
Sbjct: 249 LQ 250
Score = 151 bits (385), Expect = 2e-43
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ R+ LG + V E ++ V +I H ++ +DIAL+KL + V +
Sbjct: 63 TLTYRVALGKNNLEVEDE--AGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDT 120
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
++ CLP + P V GWGR G +A E + P++ C + + +
Sbjct: 121 IQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTV 180
Query: 299 TPNMLCAG-RGEMDSCQ 314
M+CAG G + +C
Sbjct: 181 KETMVCAGGDGVISACN 197
Score = 141 bits (358), Expect = 2e-39
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 21 CGV----TNQEVRIVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCV 72
CG N R+VGG + +PW L Y CG +LI ++VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 73 RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
R+ LG + V E ++ V +I H ++ +DIAL+KL + V
Sbjct: 61 SN--TLTYRVALGKNNLEVEDE--AGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVE 116
Query: 133 FTKSVRPICLPPDSE 147
+++ CLP +
Sbjct: 117 LGDTIQVACLPSEGS 131
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 173 bits (440), Expect = 4e-48
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
V GWG + + ++P+++ +C+ Y+ +IT M+CAG G
Sbjct: 509 VIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKITHKMICAGYREGG 567
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
D+C+GDSGGPL + LVGI SWG GC + PGVYT V Y+ W+ +
Sbjct: 568 KDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 623
Score = 150 bits (381), Expect = 6e-40
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+R+ G +QS E T V I+ H + + +DIALLKL V++T S
Sbjct: 440 KILRVYSGILNQSEIKE---DTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQ 496
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
RPICLP V GWG + + ++P+++ +C+ Y+ +IT
Sbjct: 497 RPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR-YRGHKIT 555
Query: 300 PNMLCAG--RGEMDSCQ 314
M+CAG G D+C+
Sbjct: 556 HKMICAGYREGGKDACK 572
Score = 148 bits (375), Expect = 4e-39
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 9/148 (6%)
Query: 13 FKFTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDG---NFHCGASLINEDYVLTAA 69
+ + T + RIVGG + ++PW L CG S+I ++LTAA
Sbjct: 371 LRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAA 430
Query: 70 HCVRRLKR-SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLR 128
HC ++ +R+ G +QS E T V I+ H + + +DIALLKL
Sbjct: 431 HCFYGVESPKILRVYSGILNQSEIKE---DTSFFGVQEIIIHDQYKMAESGYDIALLKLE 487
Query: 129 KPVSFTKSVRPICLPPDSEYHTVVKGTM 156
V++T S RPICLP V T
Sbjct: 488 TTVNYTDSQRPICLPSKG--DRNVIYTD 513
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 165 bits (419), Expect = 6e-48
Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL------EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+G G V GWG E + V +PI+ C+ RIT NM CA
Sbjct: 161 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST--RIRITDNMFCA 218
Query: 391 G-----RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
G D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 219 GYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 278
Query: 444 WVKRNMK 450
W+++ +
Sbjct: 279 WIQKVID 285
Score = 159 bits (405), Expect = 7e-46
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 11/153 (7%)
Query: 16 TCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCV- 72
E + + RIV G + PW L CGASLI++ +VLTAAHC+
Sbjct: 17 KTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76
Query: 73 -----RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLK 126
+ + + + +G + ++ E + + I H ++ N + DIAL+K
Sbjct: 77 YPPWDKNFTENDLLVRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALMK 134
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTVVKGTMRCR 159
L+KPV+F+ + P+CLP ++++ + R
Sbjct: 135 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKGR 167
Score = 148 bits (376), Expect = 1e-41
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 20/161 (12%)
Query: 170 QRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALL 228
D + + + +G + ++ E + + I H ++ N + DIAL+
Sbjct: 76 LYPPWDKNFTENDLLVRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALM 133
Query: 229 KLRKPVSFTKSVRPICLPPDNID----PSGKMGTVVGWGRTSEGGSLATEAL------EV 278
KL+KPV+F+ + P+CLP +G G V GWG E + V
Sbjct: 134 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 193
Query: 279 QVPILSPGQCRAMKYKPSRITPNMLCAG-----RGEMDSCQ 314
+PI+ C+ RIT NM CAG D+C+
Sbjct: 194 NLPIVERPVCKDS--TRIRITDNMFCAGYKPDEGKRGDACE 232
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 163 bits (416), Expect = 7e-48
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPGQCRAMKYKPSR------- 382
+++ P G V GWG L +V+VPI+ C A + +
Sbjct: 115 ASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRI 174
Query: 383 ITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
I +MLCAG + DSCQGDSGGPL+ G + G+VSWG GC +P PG+YTRV YL
Sbjct: 175 IRDDMLCAGNSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 443 SWVKRNM 449
W+ +
Sbjct: 235 DWIHHYV 241
Score = 139 bits (353), Expect = 8e-39
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+ +R+ L + + VS I+ H F + DIALL+L +PV+ + V
Sbjct: 54 ATLRVQLREQHLY------YQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRV 107
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPGQCRAMKYKPSR 297
+ LPP + P G V GWG L +V+VPI+ C A + +
Sbjct: 108 HTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAY 167
Query: 298 -------ITPNMLCAGRGEMDSCQ 314
I +MLCAG + DSCQ
Sbjct: 168 TGDDVRIIRDDMLCAGNSQRDSCQ 191
Score = 131 bits (331), Expect = 1e-35
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNF---HCGASLINEDYVLTAAHCVRRLKR--SKIRIVL 84
IVGG+ +K+PW L + CG SLI+ +VLTAAHCV + + +R+ L
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 85 GDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPP 144
+ + VS I+ H F + DIALL+L +PV+ + V + LPP
Sbjct: 61 REQHLY------YQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPP 114
Query: 145 DSE 147
SE
Sbjct: 115 ASE 117
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 163 bits (414), Expect = 9e-48
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 9/123 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T+ G+ + L + P+LS +C A Y P +IT NM C
Sbjct: 109 LPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS-Y-PGKITSNMFC 166
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
G G DSCQGDSGGP++ N +L G+VSWG GC + PGVYT+V Y+ W+K
Sbjct: 167 VGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 222
Query: 448 NMK 450
+
Sbjct: 223 TIA 225
Score = 144 bits (366), Expect = 7e-41
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + ++ +GD + + V +++H F Y+ DIA+L+L+ P++F +
Sbjct: 47 AKRFKVRVGDRNTEQEEGGEA---VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMN 103
Query: 240 VRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRI 298
V P LP +G + GWG T+ G+ + L + P+LS +C A Y P +I
Sbjct: 104 VAPASLPTAP-PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS-Y-PGKI 160
Query: 299 TPNMLCAG--RGEMDSCQ 314
T NM C G G DSCQ
Sbjct: 161 TSNMFCVGFLEGGKDSCQ 178
Score = 139 bits (354), Expect = 4e-39
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IVGG + PW A L+ + N CG ++++E Y+LTAAHC+ + + ++ +GD +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ V +++H F Y+ DIA+L+L+ P++F +V P LP
Sbjct: 59 TEQEEGGEA---VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 163 bits (415), Expect = 1e-47
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 8/120 (6%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM-KYKPSRITPNMLCAG--R 392
G M V GWG+ E L E+++PI+ C+ ++T +M+CAG
Sbjct: 131 QEGAMVIVSGWGKQFLQRF--PETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKE 188
Query: 393 GEMDSCQGDSGGPL--IINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
G D+C GDSGGP+ + + G++ LVG VSWG CG+ GVY+ ++ W++R
Sbjct: 189 GGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTG 248
Score = 147 bits (372), Expect = 2e-41
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S +I+LG + + + E + V H +D N + +D+AL++L + V
Sbjct: 64 SDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFV 120
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM-KYKPSRI 298
PICLP G M V GWG+ E L E+++PI+ C+ ++
Sbjct: 121 MPICLPEGP-QQEGAMVIVSGWGKQFLQRF--PETLMEIEIPIVDHSTCQKAYAPLKKKV 177
Query: 299 TPNMLCAG--RGEMDSCQ 314
T +M+CAG G D+C
Sbjct: 178 TRDMICAGEKEGGKDACA 195
Score = 142 bits (359), Expect = 1e-39
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRR-------------- 74
I GRP PW+A L + CG SL+ +++TAAHC+ +
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 134
L S +I+LG + + + E + V H +D N + +D+AL++L +
Sbjct: 61 LSPSDFKIILGKHWRLRSDENEQ---HLGVKHTTLHPQYDPNTFENDVALVELLESPVLN 117
Query: 135 KSVRPICLPPDS 146
V PICLP
Sbjct: 118 AFVMPICLPEGP 129
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 168 bits (426), Expect = 1e-47
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRL 75
+CG + R+ G ++ PW+A L Y + F CG ++I+E Y+LTAAHCV L
Sbjct: 110 DCGNFLSQ-RVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGL 168
Query: 76 KRSKIRIVLGDYDQSVTTET---------AEPTMMRAVSSIVRHRHFDVNNYNHDIALLK 126
+ I LG++ S + A P + + + H +D + HDIALLK
Sbjct: 169 QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLK 228
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTVVKGTMRC 158
L + V F K ++PICLP E +
Sbjct: 229 LNRSVPFQKHIKPICLPITDELKEKAEQISTY 260
Score = 161 bits (408), Expect = 4e-45
Identities = 43/128 (33%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 336 DPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG-RGE 394
V GWG T E GS + L+ VP+ C Y+ + + LC G
Sbjct: 254 AEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACSQ-AYR-RAVPLSQLCVGGGDL 310
Query: 395 MDSCQGDSGGPLII------NDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKR 447
DSC+GDSGGPL + GIVS G V CG+ PG+YT V Y+ W+
Sbjct: 311 QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITD 370
Query: 448 NMKDTCLC 455
M L
Sbjct: 371 TMASNGLL 378
Score = 142 bits (360), Expect = 3e-38
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 180 SSKIRIVLGDYDQSVTTET---------AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKL 230
+ I LG++ S + A P + + + H +D + HDIALLKL
Sbjct: 170 NDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKL 229
Query: 231 RKPVSFTKSVRPICLPPD----NIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPG 286
+ V F K ++PICLP V GWG T E GS + L+ VP+
Sbjct: 230 NRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRS 288
Query: 287 QCRAMKYKPSRITPNMLCAG-RGEMDSCQ 314
C Y+ + + LC G DSC+
Sbjct: 289 ACSQ-AYR-RAVPLSQLCVGGGDLQDSCK 315
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 161 bits (410), Expect = 3e-47
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMD 396
G + V GWG + G V +P+L C + IT ++CA D
Sbjct: 118 APGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRD 177
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNM 449
SC+GD+GGPL+ V L G+V+ G CG PG+YTRV Y +W+ +
Sbjct: 178 SCKGDAGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227
Score = 153 bits (389), Expect = 4e-44
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
K++++LG + S + + V V H + +HD+ LL+L + + +V
Sbjct: 49 GKVQVLLGAHSLSQPEPSK---RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAV 105
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
RP+ + D G + V GWG + G V +P+L C + IT
Sbjct: 106 RPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAIT 165
Query: 300 PNMLCAGRGEMDSCQ 314
++CA DSC+
Sbjct: 166 ERLMCAESNRRDSCK 180
Score = 148 bits (375), Expect = 3e-42
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A + +G CG L+ E +VL+AAHC+ K++++LG +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
S + + V V H + +HD+ LL+L + + +VRP+
Sbjct: 61 SQPEPSK---RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVD--R 115
Query: 150 TVVKGTM 156
V GT+
Sbjct: 116 DVAPGTL 122
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 161 bits (409), Expect = 3e-47
Identities = 54/122 (44%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
L T P+G M TV GWG T + + + + +PILS C Y P IT M CA
Sbjct: 105 LPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-Y-PGMITNAMFCA 162
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGDSGGP++ N EL G+VSWG GC PG PGVY +V + W+
Sbjct: 163 GYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
Query: 449 MK 450
M
Sbjct: 219 MA 220
Score = 143 bits (363), Expect = 2e-40
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
S++ + LG+++ VT + + + S ++RH ++ N ++DI L+KL KP +
Sbjct: 42 YKSRVEVRLGEHNIKVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNT 98
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
V+P+ LP P+G M TV GWG T + + + + +PILS C Y P I
Sbjct: 99 YVQPVALPTSC-APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-Y-PGMI 155
Query: 299 TPNMLCAG--RGEMDSCQ 314
T M CAG G DSCQ
Sbjct: 156 TNAMFCAGYLEGGKDSCQ 173
Score = 136 bits (344), Expect = 1e-37
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG P L G CG SL+NE++V++AAHC + S++ + LG+++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
VT + + + S ++RH ++ N ++DI L+KL KP + V+P+ LP
Sbjct: 56 KVTEGSEQ---FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 161 bits (409), Expect = 4e-47
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ D D T+ GWG T GG+ E+++ + QC ++ R+ + +C
Sbjct: 110 TNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTL 166
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ +C GDSGGPL+ N +GIVS+G C P VYTRV+ ++SW+ N+K
Sbjct: 167 TKRGEGACHGDSGGPLVANGA----QIGIVSFGSPCALG-EPDVYTRVSSFVSWINANLK 221
Score = 147 bits (373), Expect = 6e-42
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+++++ +G S E + V V ++++D +D+AL+ L P+ F V
Sbjct: 50 NRLKVHVGTNYLS------ESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLV 103
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITP 300
+PI L ++ D T+ GWG T GG+ E+++ + QC ++ R+
Sbjct: 104 QPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVID 160
Query: 301 NMLCAG-RGEMDSCQ 314
+ +C + +C
Sbjct: 161 SHICTLTKRGEGACH 175
Score = 146 bits (370), Expect = 2e-41
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDYD 88
IVGG+ V KYP+ L G+ CGAS+++ + VLTAAHCV L +++++ +G
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
S E + V V ++++D +D+AL+ L P+ F V+PI L + E
Sbjct: 61 LS------ESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE 113
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 161 bits (409), Expect = 7e-47
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+ + GWG T L E Q+P++ C ++ R+ LCA
Sbjct: 126 PNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCA 183
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G G DSCQGD+GGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++
Sbjct: 184 GHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 243
Query: 449 MK 450
M+
Sbjct: 244 MR 245
Score = 133 bits (336), Expect = 3e-36
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 19 LECGV-----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCV 72
+CG R+VGG + +PW L H CG +LI+ ++VLTAAHC+
Sbjct: 2 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61
Query: 73 RRLKR-SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPV 131
+ R S +++LG + + VS + DIALLKL P
Sbjct: 62 EKSPRPSSYKVILGAHQEVNLEP---HVQEIEVSRLFLE-----PTRK-DIALLKLSSPA 112
Query: 132 SFTKSVRPICLPPDSE 147
T V P CLP +
Sbjct: 113 VITDKVIPACLPSPNY 128
Score = 129 bits (327), Expect = 6e-35
Identities = 39/138 (28%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S +++LG + + VS + DIALLKL P T V
Sbjct: 68 SSYKVILGAHQEVNLEP---HVQEIEVSRLFLE-----PTRK-DIALLKLSSPAVITDKV 118
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRI 298
P CLP N + GWG T L E Q+P++ C ++ R+
Sbjct: 119 IPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRYEFLNGRV 176
Query: 299 TPNMLCAG--RGEMDSCQ 314
LCAG G DSCQ
Sbjct: 177 QSTELCAGHLAGGTDSCQ 194
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 160 bits (408), Expect = 8e-47
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR---ITPNMLCAG- 391
G MG V G+G E + L V++P+ +P C +R + NM CAG
Sbjct: 123 DLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 179
Query: 392 -RGEMDSCQGDSGGPLI--INDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ D+CQGDSGG + R+ GIVSWG+GC R G YT+V Y+ W+K+
Sbjct: 180 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 237
Query: 449 MKD 451
M++
Sbjct: 238 MEE 240
Score = 143 bits (362), Expect = 4e-40
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 171 RDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIAL 227
++ + + LG + + + H + + N+ DIAL
Sbjct: 42 YPKEHEAQSNASLDVFLGHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 97
Query: 228 LKLRKPVSFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSP 285
L+L V+ ++ PICLP ++ G MG V G+G E + L V++P+ +P
Sbjct: 98 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANP 154
Query: 286 GQCRAMKYKPSR---ITPNMLCAG--RGEMDSCQ 314
C +R + NM CAG + D+CQ
Sbjct: 155 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 188
Score = 137 bits (348), Expect = 4e-38
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVR-----RLKRSKIRIVL 84
I+GG+ + +PW G G +L+ + ++LTAAH + + + + L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 85 GDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIALLKLRKPVSFTKSVRPIC 141
G + + + H + + N+ DIALL+L V+ ++ PIC
Sbjct: 59 GHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 142 LPPDSEYHTVVKGTM 156
LP + G M
Sbjct: 115 LPDND--TFYDLGLM 127
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 160 bits (408), Expect = 8e-47
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ I P+ + V GWGR G+ + Q+ ++ C + S + NM+CAG
Sbjct: 117 AGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG 176
Query: 392 -RGEMDSCQGDSGGPLIINDV-GRYELVGIVSWG--VGCGRPGYPGVYTRVNRYLSWVKR 447
G + SC GDSGGPL G++++ GIVS+G +GC P V+TRV+ Y+ W+
Sbjct: 177 GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS 236
Query: 448 NM 449
+
Sbjct: 237 VI 238
Score = 143 bits (363), Expect = 3e-40
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLRKPVSFT 237
S R+VLG + S ++ VS +V H+ ++ N ++ DIALLKL PVS T
Sbjct: 50 SRTYRVVLGRHSLSTNEP---GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLT 106
Query: 238 KSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
++ CLP P+ + V GWGR G+ + Q+ ++ C + S
Sbjct: 107 DKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGS 166
Query: 297 RITPNMLCAG-RGEMDSCQ 314
+ NM+CAG G + SC
Sbjct: 167 TVKTNMICAGGDGIISSCN 185
Score = 129 bits (326), Expect = 7e-35
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
+VGG N +PW L YD + H CG +L+++ +VLTAAHC+ R+VLG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--SRTYRVVLG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNH--DIALLKLRKPVSFTKSVRPICLP 143
+ S ++ VS +V H+ ++ N ++ DIALLKL PVS T ++ CLP
Sbjct: 59 RHSLSTNEP---GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLP 115
Query: 144 PDSE 147
Sbjct: 116 AAGT 119
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 160 bits (408), Expect = 1e-46
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
+G ++ GWG T +GG L+ E+ + +L C ++ ++P+M+C +
Sbjct: 115 AAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKD 174
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNMK 450
C+GDSGGPL+ L G++S+ C P V T V Y+SW+++
Sbjct: 175 QAPCKGDSGGPLVCG--KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTG 229
Score = 143 bits (364), Expect = 2e-40
Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD-VNNYNHDIALLKLRKPVSFTKS 239
+++R+VLG + P + + + ++H + V +D+ALL+L V +++
Sbjct: 48 AQLRLVLGLHTLD------SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRT 101
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
+RP+ LP +G ++ GWG T +GG L+ E+ + +L C ++ +
Sbjct: 102 IRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 299 TPNMLCAG--RGEMDSCQ 314
+P+M+C + C+
Sbjct: 162 SPSMVCLAADSKDQAPCK 179
Score = 133 bits (338), Expect = 1e-36
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR + P++A L +G+ CG L++ +VLTAAHC+ + + +++R+VLG +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD-VNNYNHDIALLKLRKPVSFTKSVRPICLPPDSE 147
P + + + ++H + V +D+ALL+L V ++++RP+ LP +
Sbjct: 60 D------SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQ 112
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 164 bits (417), Expect = 2e-46
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 10/129 (7%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS----RITPNM 387
+ + +GT GWG T + G LA + V +PI+ +C A KP +T NM
Sbjct: 275 AESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 333
Query: 388 LCAG--RGEMDSCQGDSGGPLIIND--VGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYL 442
LCAG G DSC+GDSGG L+ D R+ + GIVSWG + CG G GVYT+V Y+
Sbjct: 334 LCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYI 393
Query: 443 SWVKRNMKD 451
W++ + D
Sbjct: 394 PWIENIISD 402
Score = 153 bits (389), Expect = 2e-42
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 12/146 (8%)
Query: 16 TCLLECGVTNQEV--RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVR 73
C CG++ + +I GG+ +PW ++ G +L+ +++VLTAAH V
Sbjct: 146 VCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVY 203
Query: 74 RLKR--SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKP 130
K S + I +G + T ++ H + + +++DIAL+KL
Sbjct: 204 EQKHDASALDIRMGTLKRLSPHYT-----QAWSEAVFIHEGYTHDAGFDNDIALIKLNNK 258
Query: 131 VSFTKSVRPICLPPDSEYHTVVKGTM 156
V ++ PICLP + +
Sbjct: 259 VVINSNITPICLPRKEAESFMRTDDI 284
Score = 143 bits (362), Expect = 1e-38
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 16/144 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVSFTKS 239
S + I +G + T ++ H + + +++DIAL+KL V +
Sbjct: 210 SALDIRMGTLKRLSPHYT-----QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSN 264
Query: 240 VRPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPS 296
+ PICLP + + +GT GWG T + G LA + V +PI+ +C A KP
Sbjct: 265 ITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPP 323
Query: 297 ----RITPNMLCAG--RGEMDSCQ 314
+T NMLCAG G DSC+
Sbjct: 324 YPRGSVTANMLCAGLESGGKDSCR 347
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 159 bits (405), Expect = 2e-46
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
P +V GWG T L + I+ +C + + +CA
Sbjct: 108 YGSTIPEKTSCSVYGWGYTGLINY--DGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICA 165
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
G + C+GD GGPL+ ++G++ G GC P PG++ RV Y W+ +
Sbjct: 166 GAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKI 225
Query: 449 M 449
+
Sbjct: 226 I 226
Score = 124 bits (314), Expect = 3e-33
Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+V G PT W+ L Y CG SLI E +VLTA C LG +D
Sbjct: 1 VVNGIPT-RTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ ++ D+ L+KL +P V I LP
Sbjct: 60 HGRGD-------EKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYG--S 110
Query: 150 TVVKGTM 156
T+ + T
Sbjct: 111 TIPEKTS 117
Score = 124 bits (313), Expect = 4e-33
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 13/138 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
LG +D + ++ D+ L+KL +P V
Sbjct: 48 KDYEAWLGIHDVHGRGD-------EKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFV 100
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRI 298
I LP P +V GWG T L + I+ +C +
Sbjct: 101 STIDLPNYGSTIPEKTSCSVYGWGYTGLINY--DGLLRVAHLYIMGNEKCSQHHRGKVTL 158
Query: 299 TPNMLCAG--RGEMDSCQ 314
+ +CAG + C+
Sbjct: 159 NESEICAGAEKIGSGPCE 176
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 159 bits (404), Expect = 5e-46
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPGQCRAM------KYKPSRITPNML 388
P+G TV GWG + SL T +++VP++S C ++ +P + +M+
Sbjct: 119 PNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMV 178
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVK 446
CAG G D+CQGDSGGPL G + L GIVSWG CG PGVYT + Y SW++
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQ 238
Query: 447 RNM 449
+
Sbjct: 239 SKV 241
Score = 140 bits (356), Expect = 6e-39
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGDYD 88
I GG ++PW + Y+G CG SL++E +VL+AAHC + LG +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
+ E + + I+ H + DIALL+L +P++F++ +RPI LP
Sbjct: 61 LDSYS---EDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQ-- 115
Query: 149 HTVVKGTM 156
+ G
Sbjct: 116 ASFPNGLH 123
Score = 138 bits (351), Expect = 3e-38
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+ LG + +E + + I+ H + DIALL+L +P++F++ +
Sbjct: 50 EAYEVKLGAHQLDSYSE---DAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYI 106
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPGQCRAM------ 291
RPI LP P+G TV GWG + SL T +++VP++S C ++
Sbjct: 107 RPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAK 166
Query: 292 KYKPSRITPNMLCAG--RGEMDSCQ 314
+P + +M+CAG G D+CQ
Sbjct: 167 PEEPHFVQEDMVCAGYVEGGKDACQ 191
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 158 bits (401), Expect = 5e-46
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T +G + GWG T G+ + L ++ PILS C++ Y P +IT NM C
Sbjct: 105 LPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-Y-PGQITSNMFC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKR 447
AG G DSCQGDSGGP++ + L GIVSWG GC + PGVYT+V Y+SW+K+
Sbjct: 163 AGYLEGGKDSCQGDSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Query: 448 NMK 450
+
Sbjct: 219 TIA 221
Score = 142 bits (360), Expect = 5e-40
Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
S I++ LG+ + +V + + S + H ++ N N+DI L+KL+ S
Sbjct: 42 YKSGIQVRLGEDNINVVEGNEQ---FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNS 98
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
V I LP +G + GWG T G+ + L ++ PILS C++ Y P +
Sbjct: 99 RVASISLPTSC-ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-Y-PGQ 155
Query: 298 ITPNMLCAG--RGEMDSCQ 314
IT NM CAG G DSCQ
Sbjct: 156 ITSNMFCAGYLEGGKDSCQ 174
Score = 135 bits (342), Expect = 2e-37
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG G N P+ L G CG SLIN +V++AAHC + S I++ LG+ +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNI 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+V + + S + H ++ N N+DI L+KL+ S V I LP
Sbjct: 56 NVVEGNEQ---FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP 106
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 158 bits (401), Expect = 9e-46
Identities = 47/121 (38%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR--ITPNMLCAG-- 391
SG V GWG T ++ L EV V +LS C + Y IT +M+CAG
Sbjct: 120 RSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDA 179
Query: 392 RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRV-NRYLSWVKRNMK 450
+G+ DSC+GD+GGPLI V IVS G CG PG+YT + +Y +W+K N+
Sbjct: 180 KGQKDSCKGDAGGPLICKGV----FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV 235
Query: 451 D 451
Sbjct: 236 P 236
Score = 144 bits (365), Expect = 2e-40
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+VLG + S + + + + ++DI L+KL+ K V
Sbjct: 52 QSPTVVLGAHSLSKNEAS---KQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHV 108
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR-- 297
+ + + SG V GWG T ++ L EV V +LS C + Y
Sbjct: 109 KMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPF 168
Query: 298 ITPNMLCAG--RGEMDSCQ 314
IT +M+CAG +G+ DSC+
Sbjct: 169 ITKDMVCAGDAKGQKDSCK 187
Score = 142 bits (361), Expect = 6e-40
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 28 VRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-SKIRIVLGD 86
+ I+GG+ + P++A + Y G+ CG LI+ +VLTAAHC R + +VLG
Sbjct: 1 MEIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGA 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
+ S + + + + ++DI L+KL+ K V+ + + +
Sbjct: 61 HSLSKNEAS---KQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKT 117
Query: 147 E 147
Sbjct: 118 S 118
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 161 bits (408), Expect = 9e-46
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR---ITPNMLCAG- 391
G MG V G+G E + L V++P+ +P C +R + NM CAG
Sbjct: 212 DLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 268
Query: 392 -RGEMDSCQGDSGGPLII--NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ D+CQGDSGG + + R+ GIVSWG+GC R G YT+V Y+ W+K+
Sbjct: 269 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 326
Query: 449 MKD 451
M++
Sbjct: 327 MEE 329
Score = 145 bits (368), Expect = 4e-40
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Query: 16 TCLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHC 71
CL CG Q RI+GG+ + +PW G G +L+ + ++LTAAH
Sbjct: 72 RCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHT 129
Query: 72 V-----RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIA 123
+ + + + LG + + + H + + N+ DIA
Sbjct: 130 LYPKEHEAQSNASLDVFLGHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIA 185
Query: 124 LLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
LL+L V+ ++ PICLP + G M
Sbjct: 186 LLELENSVTLGPNLLPICLPDND--TFYDLGLM 216
Score = 140 bits (355), Expect = 3e-38
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 171 RDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIAL 227
++ + + LG + + + H + + N+ DIAL
Sbjct: 131 YPKEHEAQSNASLDVFLGHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 186
Query: 228 LKLRKPVSFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSP 285
L+L V+ ++ PICLP ++ G MG V G+G E + L V++P+ +P
Sbjct: 187 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANP 243
Query: 286 GQCRAMKYKPSR---ITPNMLCAG--RGEMDSCQ 314
C +R + NM CAG + D+CQ
Sbjct: 244 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 277
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 163 bits (414), Expect = 9e-46
Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL------EVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+G G V GWG E + V +PI+ C+ RIT NM CA
Sbjct: 296 QAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS-T-RIRITDNMFCA 353
Query: 391 G-----RGEMDSCQGDSGGPLIINDV--GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
G D+C+GDSGGP ++ R+ +GIVSWG GC R G G YT V R
Sbjct: 354 GYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKK 413
Query: 444 WVKRNMK 450
W+++ +
Sbjct: 414 WIQKVID 420
Score = 153 bits (389), Expect = 3e-42
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)
Query: 16 TCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCV- 72
E + + RIV G + PW L CGASLI++ +VLTAAHC+
Sbjct: 152 KTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 211
Query: 73 -----RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALLK 126
+ + + + +G + ++ E + + I H ++ N + DIAL+K
Sbjct: 212 YPPWDKNFTENDLLVRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALMK 269
Query: 127 LRKPVSFTKSVRPICLPPDSEYHTVVKGTMRC 158
L+KPV+F+ + P+CLP ++++ +
Sbjct: 270 LKKPVAFSDYIHPVCLPDRETAASLLQAGYKG 301
Score = 146 bits (371), Expect = 1e-39
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 20/161 (12%)
Query: 170 QRDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-NNYNHDIALL 228
D + + + +G + ++ E + + I H ++ N + DIAL+
Sbjct: 211 LYPPWDKNFTENDLLVRIGKHSRTRYERNIE--KISMLEKIYIHPRYNWRENLDRDIALM 268
Query: 229 KLRKPVSFTKSVRPICLPPDNID----PSGKMGTVVGWGRTSEGGSLATEAL------EV 278
KL+KPV+F+ + P+CLP +G G V GWG E + V
Sbjct: 269 KLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVV 328
Query: 279 QVPILSPGQCRAMKYKPSRITPNMLCAG-----RGEMDSCQ 314
+PI+ C+ RIT NM CAG D+C+
Sbjct: 329 NLPIVERPVCKDS-T-RIRITDNMFCAGYKPDEGKRGDACE 367
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 157 bits (399), Expect = 1e-45
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ P G + GWG T G+ T + ++S +C + R+ + +C
Sbjct: 109 EWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIK-H-RGRVRESEMCTE 165
Query: 392 --RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+ +C+GD GGPL + L GI+ C R +P V+TRV+ ++ W+ + M
Sbjct: 166 GLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225
Query: 450 K 450
+
Sbjct: 226 R 226
Score = 121 bits (306), Expect = 4e-32
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 174 SDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKP 233
S + + + LG Q+ V+ +V + LLKL +
Sbjct: 42 SSCHMPLTGYEVWLGTLFQNPQH-GEPSLQRVPVAKMVCGPSG------SQLVLLKLERS 94
Query: 234 VSFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMK 292
V+ + V ICLPP+ P G + GWG T G+ T + ++S +C
Sbjct: 95 VTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIK- 152
Query: 293 YKPSRITPNMLCAG--RGEMDSCQ 314
+ R+ + +C + +C+
Sbjct: 153 H-RGRVRESEMCTEGLLAPVGACE 175
Score = 120 bits (302), Expect = 1e-31
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 15/130 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRR--LKRSKIRIVLGD 86
+VGG P PW L H CG SL+ E ++LTA C + + + LG
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
Q+ V+ +V + LLKL + V+ + V ICLPP+
Sbjct: 58 LFQNPQH-GEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEW 110
Query: 147 EYHTVVKGTM 156
+ V GT
Sbjct: 111 --YVVPPGTK 118
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 156 bits (398), Expect = 2e-45
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM---KYKPSRITPNMLCAG- 391
V GWG T+ + L E ++ C I + CAG
Sbjct: 115 EPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGG 174
Query: 392 -RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
E GD+G P + N LVG+ S+ +P V+ RV Y+ +K +
Sbjct: 175 EYDETYIGYGDAGDPAVQNGT----LVGVASYISSMP-SEFPSVFLRVGYYVLDIKDIIS 229
Score = 137 bits (347), Expect = 5e-38
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG+ + + K PW ++ D CG S++ ++V+TAA CV K S I I G +
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT-KSVRPICLPPDSEY 148
+ ++ + + ++ A+++ P+ K+ + I LP
Sbjct: 61 TTKGT-------SVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLY- 112
Query: 149 HTVVKGTM 156
T
Sbjct: 113 -DPEPDTS 119
Score = 130 bits (330), Expect = 1e-35
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 15/142 (10%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT-KS 239
S I I G ++ ++ + + ++ A+++ P+ K+
Sbjct: 49 SDISIHYGSSYRTTKGT-------SVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKT 101
Query: 240 VRPICLPPDNIDP-SGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAM---KYK 294
+ I LP DP V GWG T+ + L E ++ C
Sbjct: 102 TKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEA 161
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
I + CAG E
Sbjct: 162 DKYIYDGVFCAGGEYDETYIGY 183
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 159 bits (405), Expect = 2e-45
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK-------PSRI 383
S G +G + GWGRT + L ++P+ +C+ +K +
Sbjct: 200 SDYNLMDGDLGLISGWGRTEKRDR--AVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVF 257
Query: 384 TPNMLCAG-RGEMDSCQGDSGGPLII---NDVGRYELVGIVSWGVGCGRPGYPGVYTRVN 439
TPNM+CAG MDSC+GDSGG + ND ++ G+VSWG CG G+YTRV
Sbjct: 258 TPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVK 314
Query: 440 RYLSWVKRNMKDTCLC 455
Y+ W+ + M++
Sbjct: 315 NYVDWIMKTMQENSTP 330
Score = 146 bits (370), Expect = 2e-40
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 16 TCLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHC 71
C+ CGV ++ RI+GG + +PW N G +LINE +VLTAAH
Sbjct: 65 KCVPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHV 121
Query: 72 VRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-------NNYNHDIAL 124
V + + + V T + M + H + + N+++DIAL
Sbjct: 122 VEGNREPTMYVGSTS----VQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIAL 177
Query: 125 LKLRKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
++L+ PV +V PICLP S + ++ G +
Sbjct: 178 VRLKDPVKMGPTVSPICLPGTSSDYNLMDGDL 209
Score = 135 bits (341), Expect = 3e-36
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDV-------NNYNHDIALLKLRK 232
+ + + +G V T + M + H + + N+++DIAL++L+
Sbjct: 125 NREPTMYVGSTS--VQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKD 182
Query: 233 PVSFTKSVRPICLPPDNID---PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQC 288
PV +V PICLP + D G +G + GWGRT + L ++P+ +C
Sbjct: 183 PVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDR--AVRLKAARLPVAPLRKC 240
Query: 289 RAMKYK-------PSRITPNMLCAG-RGEMDSCQ 314
+ +K + TPNM+CAG MDSC+
Sbjct: 241 KEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCK 274
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 156 bits (396), Expect = 3e-45
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
+S+ +G V GWG T + L + + +LS +C Y P +I M C
Sbjct: 108 VSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA-Y-PRQIDDTMFC 165
Query: 390 AG-RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKR 447
AG + DSCQGDSGGP++ N L G+VSWG C RP PGVYT + ++ W++
Sbjct: 166 AGDKAGRDSCQGDSGGPVVCNGS----LQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQE 221
Query: 448 NMK 450
++
Sbjct: 222 TIQ 224
Score = 140 bits (355), Expect = 3e-39
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
R+ LG Y S E+ + M + H + +++D+ L+KL + + TK
Sbjct: 44 RKKVFRVRLGHYSLSPVYESGQ--QMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTK 101
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
VRPI + +G V GWG T + L + + +LS +C Y P +
Sbjct: 102 DVRPINVSSHC-PSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA-Y-PRQ 158
Query: 298 ITPNMLCAG-RGEMDSCQ 314
I M CAG + DSCQ
Sbjct: 159 IDDTMFCAGDKAGRDSCQ 176
Score = 135 bits (342), Expect = 2e-37
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
I+ G ++ PW A L+ N CGA L++ ++LTAAHC + R+ LG Y
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYS 56
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
S E+ + M + H + +++D+ L+KL + + TK VRPI +
Sbjct: 57 LSPVYESGQ--QMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS 109
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 160 bits (407), Expect = 4e-45
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM-----KYKPSRIT 384
GWG+ G ++Q+P + +C+A +
Sbjct: 254 QQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLD 313
Query: 385 PNMLCAG-RGEMDSCQGDSGGPL---IINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNR 440
+CAG D+C GD G PL + RY +GIV+WG+GCG PGVY V
Sbjct: 314 QTFVCAGGEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAH 373
Query: 441 YLSWVKRNMKDTCLCVS 457
+ +W+ + M+ L +
Sbjct: 374 FRNWIDQEMQAKGLSTT 390
Score = 149 bits (379), Expect = 5e-41
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 20 ECGVTNQE---VRIVGG-RPTGVNKYPWVARLVYDG--------NFHCGASLINEDYVLT 67
CG+ N+ +I G ++PW+ ++ CG SLI VLT
Sbjct: 117 FCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLT 176
Query: 68 AAHCVRRLKRS--KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALL 125
AHCV + + I+I G++D E P R + ++ H +F+ +D+ALL
Sbjct: 177 GAHCVNSYQSNLDAIKIRAGEWDTLTEKERL-PYQERKIRQVIIHSNFNPKTVVNDVALL 235
Query: 126 KLRKPVSFTKSVRPICLPPDSE 147
L +P+ ++ ICLP S+
Sbjct: 236 LLDRPLVQADNIGTICLPQQSQ 257
Score = 146 bits (369), Expect = 1e-39
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
I+I G++D E P R + ++ H +F+ +D+ALL L +P+ ++
Sbjct: 189 DAIKIRAGEWDTLTEKERL-PYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNI 247
Query: 241 RPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEA--LEVQVPILSPGQCRAM-----KY 293
ICLP + GWG+ G ++Q+P + +C+A
Sbjct: 248 GTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLG 307
Query: 294 KPSRITPNMLCAG-RGEMDSCQ 314
+ +CAG D+C
Sbjct: 308 LKFVLDQTFVCAGGEQGKDTCT 329
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 155 bits (395), Expect = 6e-45
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCR-AMKYKPSRITPNML 388
L + G + ++GWGR S + V + +L CR T L
Sbjct: 109 LPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTL 168
Query: 389 CAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWV 445
CAG G D+C+GDSGGPLI N GI SWG C +P P YT+V +L W+
Sbjct: 169 CAGILEGGKDTCKGDSGGPLICNGQ----FQGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224
Query: 446 KRNMK----DTC 453
+ + +C
Sbjct: 225 ENIIAGNTDASC 236
Score = 141 bits (357), Expect = 2e-39
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
RI LG + + V E + + ++ DI L++L PV +K
Sbjct: 45 DRKNFRIKLGMHSKKVPNEDEQ--TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSK 102
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCR-AMKYKPS 296
+ P LP G + ++GWGR S + V + +L CR
Sbjct: 103 HIAPFSLPSSP-PSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFEL 161
Query: 297 RITPNMLCAG--RGEMDSCQ 314
T LCAG G D+C+
Sbjct: 162 PATSRTLCAGILEGGKDTCK 181
Score = 137 bits (347), Expect = 6e-38
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYD--GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
I+GG +N++ ++ L CG +LIN+++VLTAAHC R RI LG +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR----KNFRIKLGMH 56
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ V E + + ++ DI L++L PV +K + P LP
Sbjct: 57 SKKVPNEDEQ--TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP 110
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 155 bits (394), Expect = 6e-45
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + +P G TV GWG T+ L V V ++SP C + Y + +MLC
Sbjct: 104 LPSRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV-Y-KDLLENSMLC 161
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
AG + ++C GDSGGPL+ L G+VSWG CG+P PGVYT+V ++ W+
Sbjct: 162 AGIPDSKKNACNGDSGGPLVCRGT----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWIN 217
Query: 447 RNMK 450
MK
Sbjct: 218 DTMK 221
Score = 139 bits (354), Expect = 4e-39
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
++ + LG S RH + + +D+ L+KL +
Sbjct: 43 KMNEYTVHLGSDTLGDRRAQ-----RIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSS 97
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
V+ + LP +P G TV GWG T+ L V V ++SP C + Y
Sbjct: 98 MVKKVRLPSRC-EPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV-Y-KDL 154
Query: 298 ITPNMLCAG--RGEMDSCQ 314
+ +MLCAG + ++C
Sbjct: 155 LENSMLCAGIPDSKKNACN 173
Score = 137 bits (347), Expect = 4e-38
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ G P +PW L+ HCG L+NE +VLTAAHC ++ + LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK----MNEYTVHLGSDTL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
S RH + + +D+ L+KL + V+ + LP
Sbjct: 57 GDRRAQ-----RIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP 105
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 150 bits (382), Expect = 7e-45
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 362 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVS 421
+ +P+LS C+ KY ++I M+CAG + SC GDSGGPL+ G + LVGIVS
Sbjct: 9 QASLPLLSNTNCK--KYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVS 66
Query: 422 WGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
WG PGVY RV ++WV++ +
Sbjct: 67 WGSSTCSTSTPGVYARVTALVNWVQQTL 94
Score = 56.0 bits (136), Expect = 3e-10
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 277 EVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDSCQ 314
+ +P+LS C+ KY ++I M+CAG + SC
Sbjct: 9 QASLPLLSNTNCK--KYWGTKIKDAMICAGASGVSSCM 44
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 159 bits (405), Expect = 9e-45
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR---ITPNMLCAG- 391
G MG V G+G E + L V++P+ +P C +R + NM CAG
Sbjct: 280 DLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 336
Query: 392 -RGEMDSCQGDSGGPLII--NDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRN 448
+ D+CQGDSGG + + R+ GIVSWG+GC R G YT+V Y+ W+K+
Sbjct: 337 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 394
Query: 449 MKD 451
M++
Sbjct: 395 MEE 397
Score = 145 bits (367), Expect = 3e-39
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 20/153 (13%)
Query: 16 TCLLECGV----TNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHC 71
CL CG Q +I+GG+ + +PW G G +L+ + ++LTAAH
Sbjct: 140 RCLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHT 197
Query: 72 V-----RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIA 123
+ + + + LG + + + H + + N+ DIA
Sbjct: 198 LYPKEHEAQSNASLDVFLGHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIA 253
Query: 124 LLKLRKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
LL+L V+ ++ PICLP + G M
Sbjct: 254 LLELENSVTLGPNLLPICLPDND--TFYDLGLM 284
Score = 139 bits (353), Expect = 2e-37
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 171 RDGSDVKLVSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHF---DVNNYNHDIAL 227
++ + + LG + + + H + + N+ DIAL
Sbjct: 199 YPKEHEAQSNASLDVFLGHTNVE----ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIAL 254
Query: 228 LKLRKPVSFTKSVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSP 285
L+L V+ ++ PICLP ++ G MG V G+G E + L V++P+ +P
Sbjct: 255 LELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA---HDLRFVRLPVANP 311
Query: 286 GQCRAMKYKPSR---ITPNMLCAG--RGEMDSCQ 314
C +R + NM CAG + D+CQ
Sbjct: 312 QACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQ 345
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 156 bits (396), Expect = 1e-44
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 6/120 (5%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+ + G + GW R G L V ++ +C + +T C
Sbjct: 163 FAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECG--QVLNVTVTTRTYCE 218
Query: 391 GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ + G + G + L G++ G + + T+V+RY W K+ M
Sbjct: 219 R-SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 276
Score = 133 bits (337), Expect = 4e-36
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 20 ECGVTNQ---EVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRL 75
+C +Q V R + PW +L CG +I E++VLT A C
Sbjct: 40 QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLH 99
Query: 76 KRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
+ ++ Q +M ++ + H +D + +D++LL+L P+
Sbjct: 100 RNITVKTYFNRTSQD--------PLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPG 151
Query: 136 SVRPICLP-PDSEYHTVVKGTM 156
+ P+C P D H ++ T
Sbjct: 152 AGLPVCTPEKDFAEHLLIPRTR 173
Score = 131 bits (331), Expect = 3e-35
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 15/139 (10%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
I + S + +M ++ + H +D + +D++LL+L P+ +
Sbjct: 99 HRNITVKTYFNRTS------QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGA 152
Query: 240 VRPICLP----PDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKP 295
P+C P +++ G + GW R G L V ++ +C +
Sbjct: 153 GLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECG--QVLN 208
Query: 296 SRITPNMLCAGRGEMDSCQ 314
+T C + +
Sbjct: 209 VTVTTRTYCER-SSVAAMH 226
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 153 bits (388), Expect = 5e-44
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + G + ++GWG + + + +L C+A Y LC
Sbjct: 107 LPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAG-YPELLTEYRTLC 165
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVK 446
AG G D+C GDSGGPLI N GIVS+G CG+ PGVYT+V Y W++
Sbjct: 166 AGILEGGKDTCGGDSGGPLICNGQ----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQ 221
Query: 447 RNMK----DTC 453
+ TC
Sbjct: 222 SIIAGNTTVTC 232
Score = 140 bits (355), Expect = 4e-39
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ + F C +LINE++VLTAAHC + ++ LG + +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD----NTNFQMKLGVHSK 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V E + + + + DI L+KL VS ++ + P+ LP
Sbjct: 57 KVLNEDEQ--TRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLP 108
Score = 138 bits (350), Expect = 2e-38
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
++ ++ LG + + V E + + + + DI L+KL VS ++
Sbjct: 43 DNTNFQMKLGVHSKKVLNEDEQ--TRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSE 100
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
+ P+ LP G + ++GWG + + + +L C+A Y
Sbjct: 101 HIVPLSLPSSP-PSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAG-YPELL 158
Query: 298 ITPNMLCAG--RGEMDSCQ 314
LCAG G D+C
Sbjct: 159 TEYRTLCAGILEGGKDTCG 177
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 153 bits (388), Expect = 5e-44
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L ++ G + ++GWG + + + + IL C+A + LC
Sbjct: 106 LPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG---LAATTLC 162
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
AG G D+C+GDSGGPLI N GI+S G C +P PG+YT+V Y W++
Sbjct: 163 AGILEGGKDTCKGDSGGPLICNGQ----FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQ 218
Query: 447 RNMK----DTC 453
+ TC
Sbjct: 219 SIISGNTDATC 229
Score = 139 bits (352), Expect = 9e-39
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
++GG +N++ ++A + Y CG +LIN+++VLTA HC R +RI LG ++
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDR----GNMRIYLGMHNL 55
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
V + A + ++ DI L++L +PV + + P+ LP
Sbjct: 56 KVLNKDAL--RRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP 107
Score = 137 bits (347), Expect = 4e-38
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+RI LG ++ V + A + ++ DI L++L +PV +
Sbjct: 42 DRGNMRIYLGMHNLKVLNKDAL--RRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSA 99
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
+ P+ LP + G + ++GWG + + + + IL C+A
Sbjct: 100 HIAPLSLPSNP-PSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG--- 155
Query: 298 ITPNMLCAG--RGEMDSCQ 314
+ LCAG G D+C+
Sbjct: 156 LAATTLCAGILEGGKDTCK 174
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 152 bits (387), Expect = 7e-44
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + G ++GWG+ S + + I+ C + Y LC
Sbjct: 109 LPSRSRGVGSRCRIMGWGKISTTTY--PDVPHCTNIFIVKHKWCEPL-YPWVPADSRTLC 165
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVK 446
AG +G D+C GDSGGPLI N + GIV+ G CG+ P VYT+V Y +W++
Sbjct: 166 AGILKGGRDTCHGDSGGPLICNGE----MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQ 221
Query: 447 RNMK----DTC 453
+ TC
Sbjct: 222 SIIAGNRTVTC 232
Score = 138 bits (351), Expect = 1e-38
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
IRI LG + +++ E + + N + DI L++LR+PV+++
Sbjct: 45 DRRNIRIKLGMHSKNIRNEDEQ--IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYST 102
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
+ P+ LP + G ++GWG+ S + + I+ C + Y
Sbjct: 103 HIAPVSLPSRS-RGVGSRCRIMGWGKISTTTY--PDVPHCTNIFIVKHKWCEPL-YPWVP 158
Query: 298 ITPNMLCAG--RGEMDSCQ 314
LCAG +G D+C
Sbjct: 159 ADSRTLCAGILKGGRDTCH 177
Score = 135 bits (343), Expect = 2e-37
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN--FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDY 87
+VGG +N++P++ L + HC +LIN ++VLTAAHC R IRI LG +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR----RNIRIKLGMH 56
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+++ E + + N + DI L++LR+PV+++ + P+ LP
Sbjct: 57 SKNIRNEDEQ--IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLP 110
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 154 bits (392), Expect = 1e-43
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 6/119 (5%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+ + G + GW R G L V ++ +C + +T C
Sbjct: 204 FAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECG--QVLNVTVTTRTYCE 259
Query: 391 GRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+ + G + G + L G++ G + + T+V+RY W K+ M
Sbjct: 260 R-SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 316
Score = 134 bits (338), Expect = 7e-36
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 17 CLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRL 75
+ V R + PW +L CG +I E++VLT A C
Sbjct: 81 QCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLH 140
Query: 76 KRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 135
+ ++ + +M ++ + H +D + +D++LL+L P+
Sbjct: 141 RNITVKTYFNRTS--------QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPG 192
Query: 136 SVRPICLP-PDSEYHTVVKGTM 156
+ P+C P D H ++ T
Sbjct: 193 AGLPVCTPEKDFAEHLLIPRTR 214
Score = 130 bits (330), Expect = 8e-35
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 9/122 (7%)
Query: 197 ETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP----PDNIDP 252
T++ +M ++ + H +D + +D++LL+L P+ + P+C P +++
Sbjct: 151 RTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLI 210
Query: 253 SGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAGRGEMDS 312
G + GW R G L V ++ +C + +T C + +
Sbjct: 211 PRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECG--QVLNVTVTTRTYCER-SSVAA 265
Query: 313 CQ 314
Sbjct: 266 MH 267
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 160 bits (405), Expect = 2e-43
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
V GWGR + + + L +V ++S C Y M CAG G
Sbjct: 444 QPNDTCIVSGWGREKDNERVFS--LQWGEVKLIS--NCSKF-YGNRFYEKEMECAGTYDG 498
Query: 394 EMDSCQGDSGGPLIINDV-GRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+D+C+GDSGGPL+ D + G+VSWG CG+P +PGVYT+V Y W+ ++
Sbjct: 499 SIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555
Score = 142 bits (359), Expect = 3e-37
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 19 LECGVTN----QEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRR 74
L CGV N + RIVGG+ + PW + CG I ++LTAAHC+R
Sbjct: 307 LSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRA 366
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFT 134
K + +I D ++ V I+ H +++ Y +DIAL++++K +
Sbjct: 367 SKTHRYQIWTTVVDWIHPDLK--RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKK 424
Query: 135 KS----VRPICLPPDSE 147
P C+P
Sbjct: 425 DCELPRSIPACVPWSPY 441
Score = 133 bits (335), Expect = 5e-34
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS- 239
+ +I D ++ V I+ H +++ Y +DIAL++++K +
Sbjct: 370 HRYQIWTTVVDWIHPDLK--RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCE 427
Query: 240 ---VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYK 294
P C+P V GWGR + + + L +V ++S C Y
Sbjct: 428 LPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVFS--LQWGEVKLIS--NCSKF-YG 482
Query: 295 PSRITPNMLCAG--RGEMDSCQ 314
M CAG G +D+C+
Sbjct: 483 NRFYEKEMECAGTYDGSIDACK 504
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 150 bits (382), Expect = 5e-43
Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T+ G GWG T+ + L V + +L C K ++T MLC
Sbjct: 120 LPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD--KAHEMKVTDAMLC 177
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-GCGRPGYPGVYTRVNRYLSWVK 446
AG G +C+ DSGGPLI + L GI SWG CG P P VYT++ ++ SW++
Sbjct: 178 AGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIR 233
Query: 447 RNMK 450
M
Sbjct: 234 ETMA 237
Score = 132 bits (334), Expect = 4e-36
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 29 RIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
V + N PW + + CG L++ ++VLTAAHC K ++ LG +
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY----NDKYQVWLGKNN 58
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIALLKLRKPVSFTKSV 137
+ + R VS + H F+ ++Y++D+ LL+L KP T V
Sbjct: 59 FLEDEPSDQ---HRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVV 115
Query: 138 RPICLP 143
+PI LP
Sbjct: 116 KPITLP 121
Score = 129 bits (326), Expect = 5e-35
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIAL 227
+ K ++ LG + + + R VS + H F+ ++Y++D+ L
Sbjct: 46 YNDKYQVWLGKNNFLEDEPSDQ---HRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLML 102
Query: 228 LKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPG 286
L+L KP T V+PI LP + G GWG T+ + L V + +L
Sbjct: 103 LRLSKPADITDVVKPITLPTEE-PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNE 161
Query: 287 QCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
C K ++T MLCAG G +C+
Sbjct: 162 DCD--KAHEMKVTDAMLCAGEMDGGSYTCE 189
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 147 bits (374), Expect = 5e-43
Identities = 43/126 (34%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEA---LEVQVPILSPGQCRAMKYKPSRITPNM 387
L T G GWG G VQ+ +L C + P ++T +M
Sbjct: 30 LPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADA-H-PDKVTESM 87
Query: 388 LCAG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSW 444
LCAG G D+C GDSGGPLI N + GI SWG CG P +YT++ YL W
Sbjct: 88 LCAGYLPGGKDTCMGDSGGPLICNGM----WQGITSWGHTPCGSANKPSIYTKLIFYLDW 143
Query: 445 VKRNMK 450
+ +
Sbjct: 144 IDDTIT 149
Score = 112 bits (283), Expect = 8e-30
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 217 DVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEA- 275
D +Y+HD+ LL+L+ P T +V+ + LP G GWG G
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQE-PELGSTCEASGWGSIEPGPDDFEFPD 60
Query: 276 --LEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
VQ+ +L C + P ++T +MLCAG G D+C
Sbjct: 61 EIQCVQLTLLQNTFCADA-H-PDKVTESMLCAGYLPGGKDTCM 101
Score = 55.2 bits (134), Expect = 2e-09
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 114 DVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
D +Y+HD+ LL+L+ P T +V+ + LP
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELP 31
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 149 bits (380), Expect = 7e-43
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 12/124 (9%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L D + ++GWG+T++G + + + ++S +C P +IT NMLC
Sbjct: 106 LERDCSANTTSCHILGWGKTADGDF--PDTIQCAYIHLVSREECE--HAYPGQITQNMLC 161
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
AG + DSCQGDSGGPL+ D L G+VSWG + CG PGVYT V RY +W++
Sbjct: 162 AGDEKYGKDSCQGDSGGPLVCGDH----LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQ 217
Query: 447 RNMK 450
+ ++
Sbjct: 218 KTIQ 221
Score = 138 bits (349), Expect = 2e-38
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+V G P +P+ A L G+ CG LI+ +VLTAAHC + +++ LG ++
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK----KPNLQVFLGKHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
+ E +V V H +D +++ DI LL+L +P ++ ++P+ L
Sbjct: 57 RQRESSQE---QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE 107
Score = 134 bits (341), Expect = 3e-37
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+++ LG ++ + E +V V H +D +++ DI LL+L +P ++
Sbjct: 43 KKPNLQVFLGKHNLRQRESSQE---QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSE 99
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSR 297
++P+ L D + ++GWG+T++G + + + ++S +C P +
Sbjct: 100 LIQPLPLERDCS-ANTTSCHILGWGKTADGDF--PDTIQCAYIHLVSREECE--HAYPGQ 154
Query: 298 ITPNMLCAG--RGEMDSCQ 314
IT NMLCAG + DSCQ
Sbjct: 155 ITQNMLCAGDEKYGKDSCQ 173
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 150 bits (380), Expect = 8e-43
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T+ G GWG + L V + IL +C+ K ++T MLC
Sbjct: 118 LPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK--KAHVQKVTDFMLC 175
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
G G D+C GDSGGPL+ + L G+ SWG V CG P P V RV Y+ W++
Sbjct: 176 VGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIE 231
Query: 447 RNMK 450
+
Sbjct: 232 DTIA 235
Score = 125 bits (316), Expect = 1e-33
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG + PW A L + F CG L++ +VLTAAHC+ ++ LG ++
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVS-FTKSV 137
TA+ VS H F+++ +Y+HD+ LL+L +P T +V
Sbjct: 57 FDDENTAQ---FVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAV 113
Query: 138 RPICLPPD 145
+ + LP +
Sbjct: 114 KVVELPTE 121
Score = 122 bits (309), Expect = 1e-32
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 21/151 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIAL 227
+S ++ LG ++ TA+ VS H F+++ +Y+HD+ L
Sbjct: 43 ISDNYQLWLGRHNLFDDENTAQ---FVHVSESFPHPGFNMSLLENHTRQADEDYSHDLML 99
Query: 228 LKLRKPVS-FTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSP 285
L+L +P T +V+ + LP + G GWG + L V + IL
Sbjct: 100 LRLTEPADTITDAVKVVELPTEE-PEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPN 158
Query: 286 GQCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+C+ K ++T MLC G G D+C
Sbjct: 159 DECK--KAHVQKVTDFMLCVGHLEGGKDTCV 187
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 149 bits (379), Expect = 9e-43
Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L+ G+ + GWG + L +V I S +C + P +IT M+C
Sbjct: 109 LANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE--RAYPGKITEGMVC 166
Query: 390 AG-RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKR 447
AG D+CQGDSGGPL+ + + L GI SWG CG+P PGVYT++ RY +W+K+
Sbjct: 167 AGSSNGADTCQGDSGGPLVCDGM----LQGITSWGSDPCGKPEKPGVYTKICRYTTWIKK 222
Query: 448 NM 449
M
Sbjct: 223 TM 224
Score = 133 bits (337), Expect = 1e-36
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ GR + PW A L CG L+ + +VLTAAHC + K + LGD+
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCK----KQKYSVRLGDHSL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNN---YNHDIALLKLRKPVSFTKSVRPICLP 143
+ + V+ ++H ++ +N ++HDI L++L+ + V+P+ L
Sbjct: 57 QSRDQPEQ---EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA 110
Score = 132 bits (334), Expect = 3e-36
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNN---YNHDIALLKLRKPVSF 236
K + LGD+ + + V+ ++H ++ +N ++HDI L++L+ +
Sbjct: 44 KQKYSVRLGDHSLQSRDQPEQ---EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANL 100
Query: 237 TKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKP 295
V+P+ L + G+ + GWG + L +V I S +C + P
Sbjct: 101 GDKVKPVQL-ANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE--RAYP 157
Query: 296 SRITPNMLCAG-RGEMDSCQ 314
+IT M+CAG D+CQ
Sbjct: 158 GKITEGMVCAGSSNGADTCQ 177
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 149 bits (378), Expect = 2e-42
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T G GWG + + L V + +L C + Y ++T MLC
Sbjct: 117 LPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKV-Y-LQKVTDVMLC 174
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
AG G D+C+ DSGGPLI + + L G S+G V CG+PG P +YT + ++ SW+K
Sbjct: 175 AGEMGGGKDTCRDDSGGPLICDGI----LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIK 230
Query: 447 RNMK 450
M
Sbjct: 231 DTMM 234
Score = 128 bits (325), Expect = 8e-35
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIAL 227
+ + LG +A+ R VS H F+++ +++ D+ L
Sbjct: 43 YVDQYEVWLGKNKLFQEEPSAQ---HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLML 99
Query: 228 LKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPG 286
L+L KP T V+PI LP G GWG + + L V + +L
Sbjct: 100 LRLSKPADITDVVKPIALPTKEP-KPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNE 158
Query: 287 QCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
C + Y ++T MLCAG G D+C+
Sbjct: 159 NCAKV-Y-LQKVTDVMLCAGEMGGGKDTCR 186
Score = 127 bits (321), Expect = 3e-34
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
+VGG N PW + Y CG L++ ++VLTAAHC + + LG
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY----VDQYEVWLGKNKL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVSFTKSVR 138
+A+ R VS H F+++ +++ D+ LL+L KP T V+
Sbjct: 57 FQEEPSAQ---HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVK 113
Query: 139 PICLP 143
PI LP
Sbjct: 114 PIALP 118
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 148 bits (375), Expect = 4e-42
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T G GWG T+ + + L V + +LS +C + +T MLC
Sbjct: 115 LPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI--ETYKDNVTDVMLC 172
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVK 446
AG G D+C GDSGGPLI + V L GI S G C +P P +Y ++ ++ SW+K
Sbjct: 173 AGEMEGGKDTCAGDSGGPLICDGV----LQGITSGGATPCAKPKTPAIYAKLIKFTSWIK 228
Query: 447 RNMK 450
+ MK
Sbjct: 229 KVMK 232
Score = 127 bits (321), Expect = 3e-34
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIAL 227
S+ +++LG + A+ R V RH + V+++++D+ L
Sbjct: 41 YSNNYQVLLGRNNLFKDEPFAQ---RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLML 97
Query: 228 LKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPG 286
L L +P T V+ I LP G GWG T+ + + L V + +LS
Sbjct: 98 LHLSEPADITGGVKVIDLPTKEP-KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNE 156
Query: 287 QCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+C + +T MLCAG G D+C
Sbjct: 157 KCI--ETYKDNVTDVMLCAGEMEGGKDTCA 184
Score = 119 bits (301), Expect = 2e-31
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N PW ++ + CG LI+ +V+TAAHC + +++LG +
Sbjct: 1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCYS----NNYQVLLGRNNL 54
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIALLKLRKPVSFTKSVR 138
A+ R V RH + V+++++D+ LL L +P T V+
Sbjct: 55 FKDEPFAQ---RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVK 111
Query: 139 PICLP 143
I LP
Sbjct: 112 VIDLP 116
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 146 bits (372), Expect = 1e-41
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCA 390
+++ +G V GWG + G + T V V ++S C + Y P+M CA
Sbjct: 107 IASQCPTAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKL-Y-DPLYHPSMFCA 163
Query: 391 G--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKR 447
G + + DSC GDSGGPLI N L G+VS+G CG+ G PGVYT + ++ W+++
Sbjct: 164 GGGQDQKDSCNGDSGGPLICNGY----LQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEK 219
Query: 448 NMK 450
++
Sbjct: 220 TVQ 222
Score = 134 bits (340), Expect = 4e-37
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+ G + PW A LV + C L++ +VL+AAHC ++ I LG +
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF----QNSYTIGLGLHSL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLP 143
E M S VRH ++ +D+ L+KL + VS + ++R I +
Sbjct: 57 EADQEPGS--QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIA 108
Score = 132 bits (335), Expect = 2e-36
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+ I LG + E M S VRH ++ +D+ L+KL + VS +
Sbjct: 43 FQNSYTIGLGLHSLEADQEPGS--QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESD 100
Query: 239 SVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
++R I + +G V GWG + G + T V V ++S C + Y
Sbjct: 101 TIRSISIASQCP-TAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKL-Y-DPLY 156
Query: 299 TPNMLCAG--RGEMDSCQ 314
P+M CAG + + DSC
Sbjct: 157 HPSMFCAGGGQDQKDSCN 174
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 147 bits (373), Expect = 1e-41
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T G GWG L + L V + ++S C + P ++T MLC
Sbjct: 117 LPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCA--QVHPQKVTKFMLC 174
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVK 446
AG G +C GDSGGPL+ N V L GI SWG C P P +YT+V Y W+K
Sbjct: 175 AGRWTGGKSTCSGDSGGPLVCNGV----LQGITSWGSEPCALPERPSLYTKVVHYRKWIK 230
Query: 447 RNMK 450
+
Sbjct: 231 DTIV 234
Score = 125 bits (317), Expect = 9e-34
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIAL 227
+ +K I+LG + +T + + VS H +D++ + +HD+ L
Sbjct: 43 IRNKSVILLGRHSLFHPEDTGQ---VFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLML 99
Query: 228 LKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPG 286
L+L +P T +V+ + LP G GWG L + L V + ++S
Sbjct: 100 LRLSEPAELTDAVKVMDLPTQEP-ALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISND 158
Query: 287 QCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
C + P ++T MLCAG G +C
Sbjct: 159 VCA--QVHPQKVTKFMLCAGRWTGGKSTCS 186
Score = 125 bits (315), Expect = 2e-33
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG + PW + G CG L++ +VLTAAHC+ R+K I+LG +
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVN-----------NYNHDIALLKLRKPVSFTKSVR 138
+T + + VS H +D++ + +HD+ LL+L +P T +V+
Sbjct: 57 FHPEDTGQ---VFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVK 113
Query: 139 PICLP 143
+ LP
Sbjct: 114 VMDLP 118
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 146 bits (372), Expect = 1e-41
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
G+ +V GWG+T+ G + EV++ + +C + + + LC G +
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESD-LRHYYDSTIELCVGDPEIK 175
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
S +GDSGGPL+ N V GIVS+G G P P T+V+ ++ W+K+ MK
Sbjct: 176 KTSFKGDSGGPLVCNKV----AQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMK 225
Score = 140 bits (356), Expect = 2e-39
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
S I + LG ++ T + V + H ++ N+++DI LL+L + T+
Sbjct: 46 WGSSINVTLGAHNIKEQEPTQQ---FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTR 102
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
+V+P+ LP + G+ +V GWG+T+ G + EV++ + +C + +
Sbjct: 103 AVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESD-LRHYY 161
Query: 298 ITPNMLCAG--RGEMDSCQ 314
+ LC G + S +
Sbjct: 162 DSTIELCVGDPEIKKTSFK 180
Score = 132 bits (334), Expect = 4e-36
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYD---GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A L+ CG LI +D+VLTAAHC S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWG----SSINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T + V + H ++ N+++DI LL+L + T++V+P+ LP +
Sbjct: 57 HNIKEQEPTQQ---FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNK 113
Query: 147 EYHTVVKGTMRCR 159
V G C
Sbjct: 114 A--QVKPGQT-CS 123
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 146 bits (371), Expect = 2e-41
Identities = 44/121 (36%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK--PSRITPNMLCAG--R 392
G M V GWGRT S + EV++ I+ C + I NM+CAG R
Sbjct: 115 KPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLR 174
Query: 393 GEMDSCQGDSGGPLIINDVGRYELVGIVSWGV--GCGRPGYPGVYTRV-NRYLSWVKRNM 449
G DSC GDSG PL+ V G+ S+G+ CG P PGVY + ++L+W+ +
Sbjct: 175 GGRDSCNGDSGSPLLCEGV----FRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
Query: 450 K 450
K
Sbjct: 231 K 231
Score = 139 bits (352), Expect = 8e-39
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + +++LG + + T + + V + +D D+ LL+L + K
Sbjct: 45 NKRSQVILGAHSITREEPTKQ---IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKY 101
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK--PS 296
V + LP D G M V GWGRT S + EV++ I+ C +
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNP 161
Query: 297 RITPNMLCAG--RGEMDSCQ 314
I NM+CAG RG DSC
Sbjct: 162 VIGMNMVCAGSLRGGRDSCN 181
Score = 134 bits (340), Expect = 5e-37
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG + P++ L D C +LI +D+VLTAAHC + +++LG +
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCN---LNKRSQVILGAHSI 57
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ T + + V + +D D+ LL+L + K V + LP +
Sbjct: 58 TREEPTKQ---IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD-- 112
Query: 150 TVVKGTM 156
V GTM
Sbjct: 113 DVKPGTM 119
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 145 bits (369), Expect = 4e-41
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L T G GWG S + + L V++ + S +C + P ++T +LC
Sbjct: 117 LPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA--RAYPEKMTEFVLC 174
Query: 390 AG--RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVK 446
A C GDSGG LI + V GI SWG C V+T+V + W+K
Sbjct: 175 ATHRDDSGSICLGDSGGALICDGV----FQGITSWGYSECADFNDNFVFTKVMPHKKWIK 230
Query: 447 RNMK 450
++
Sbjct: 231 ETIE 234
Score = 125 bits (317), Expect = 1e-33
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIAL 227
+S +I LG ++ S +TA+ VS FD ++ +HD+ L
Sbjct: 43 MSDDYQIWLGRHNLSKDEDTAQ---FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLML 99
Query: 228 LKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPG 286
L+L +P T +V+ + LP G GWG S + + L V++ + S
Sbjct: 100 LRLAQPARITDAVKILDLPTQE-PKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNE 158
Query: 287 QCRAMKYKPSRITPNMLCAG--RGEMDSCQ 314
+C + P ++T +LCA C
Sbjct: 159 KCA--RAYPEKMTEFVLCATHRDDSGSICL 186
Score = 125 bits (315), Expect = 2e-33
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GG + PW + + G+F CG L++ +VLTAAHC+ +I LG ++
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM----SDDYQIWLGRHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD-----------VNNYNHDIALLKLRKPVSFTKSVR 138
S +TA+ VS FD ++ +HD+ LL+L +P T +V+
Sbjct: 57 SKDEDTAQ---FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVK 113
Query: 139 PICLPPD 145
+ LP
Sbjct: 114 ILDLPTQ 120
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 145 bits (368), Expect = 4e-41
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 331 LSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLC 389
L + G + T GWG S+ ++ L +V VPI+S C A Y +T +C
Sbjct: 108 LPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDA-VY--GIVTDGNIC 164
Query: 390 AG-RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCG-RPGYPGVYTRVNRYLSWVKR 447
G +C GDSGGPL N + GI S+G G GYP +TRV +L W++
Sbjct: 165 IDSTGGKGTCNGDSGGPLNYNGL----TYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQT 220
Query: 448 NM 449
Sbjct: 221 QT 222
Score = 139 bits (352), Expect = 8e-39
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGG N +P A L D + CG SLI+ +++LTAAHC+ + +VLG ++
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNI 58
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
T + H +++ ++DIA+++L PV+ T ++ + LP
Sbjct: 59 REDEATQV---TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGV 115
Score = 134 bits (341), Expect = 3e-37
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + +VLG ++ T + H +++ ++DIA+++L PV+ T +
Sbjct: 46 AGFVDVVLGAHNIREDEATQV---TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAA 102
Query: 240 VRPICLPPDNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRI 298
+ + LP + G + T GWG S+ ++ L +V VPI+S C A Y +
Sbjct: 103 IATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDA-VY--GIV 158
Query: 299 TPNMLCAG-RGEMDSCQ 314
T +C G +C
Sbjct: 159 TDGNICIDSTGGKGTCN 175
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 144 bits (367), Expect = 5e-41
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
G V GWG+ + G EV++ + C + ++ S N +C G + +
Sbjct: 118 KPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQ-FQSSYNRANEICVGDSKIK 176
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
S + DSGGPL+ GIVS+G G P V+TRV ++SW+K+ MK
Sbjct: 177 GASFEEDSGGPLVCKRA----AAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK 226
Score = 140 bits (355), Expect = 4e-39
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+ + LG ++ ET + + V+ + H ++ ++ ++DI LLKL + T+
Sbjct: 47 KGRSMTVTLGAHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTR 103
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
+VRP+ LP N G V GWG+ + G EV++ + C + ++ S
Sbjct: 104 AVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQ-FQSSY 162
Query: 298 ITPNMLCAG--RGEMDSCQ 314
N +C G + + S +
Sbjct: 163 NRANEICVGDSKIKGASFE 181
Score = 126 bits (320), Expect = 3e-34
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A + CG L+ + +VLTAAHC + + LG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG----RSMTVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ ET + + V+ + H ++ ++ ++DI LLKL + T++VRP+ LP
Sbjct: 57 AHNIKAKEETQQ---IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRR 113
Query: 146 SEYHTVVKGTMRCR 159
+ V G C
Sbjct: 114 NA--HVKPGDE-CY 124
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 144 bits (365), Expect = 1e-40
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCAG--RG 393
G + TV GWGR S T+ L EVQ+ + QC + S +C G R
Sbjct: 117 RPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQCL--RIFGSYDPRRQICVGDRRE 172
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ +GDSGGPL+ N+V GIVS+G G P P V+TRV+ +L W++ M+
Sbjct: 173 RKAAFKGDSGGPLLCNNV----AHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMR 223
Score = 136 bits (345), Expect = 8e-38
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
S I + LG ++ T + +RH ++ +DI LL+L + V +
Sbjct: 46 WGSNINVTLGAHNIQRRENTQQ---HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNR 102
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPS 296
+V P+ LP G + TV GWGR S T+ L EVQ+ + QC + S
Sbjct: 103 NVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQCL--RIFGS 158
Query: 297 RITPNMLCAG--RGEMDSCQ 314
+C G R + +
Sbjct: 159 YDPRRQICVGDRRERKAAFK 178
Score = 128 bits (324), Expect = 7e-35
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYD---GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GGR + + P++A L G CG L+ ED+VLTAAHC S I + LG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWG----SNINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T + +RH ++ +DI LL+L + V ++V P+ LP
Sbjct: 57 HNIQRRENTQQ---HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQ 113
Query: 147 EYHTVVKGTM 156
E + GT+
Sbjct: 114 E--GLRPGTL 121
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 143 bits (364), Expect = 2e-40
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
G M +V GWGR + EV + + S +C + I +CAG
Sbjct: 117 KPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCI--ARFKNYIPFTQICAGDPSKR 174
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+S GDSGGPL+ N V GIVS+G G P VYTR++ +LSW+ M+
Sbjct: 175 KNSFSGDSGGPLVCNGV----AQGIVSYGRNDGTT--PDVYTRISSFLSWIHSTMR 224
Score = 139 bits (353), Expect = 6e-39
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 8/139 (5%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+ S I + LG ++ T + + V + H ++ +DI LLKL + T
Sbjct: 46 LGSSINVTLGAHNIMERERTQQ---VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITD 102
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
V PI LP + G M +V GWGR + EV + + S +C +
Sbjct: 103 KVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCI--ARFKNY 160
Query: 298 ITPNMLCAG--RGEMDSCQ 314
I +CAG +S
Sbjct: 161 IPFTQICAGDPSKRKNSFS 179
Score = 128 bits (324), Expect = 9e-35
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVY---DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
I+GG + P++A L++ + CG L+ ED+VLTAAHC+ S I + LG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLG----SSINVTLGA 56
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T + + V + H ++ +DI LLKL + T V PI LP
Sbjct: 57 HNIMERERTQQ---VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSL 113
Query: 147 EYHTVVKGTM 156
V G M
Sbjct: 114 A--EVKPGMM 121
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 140 bits (355), Expect = 3e-39
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 336 DPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNMLCA-GRG 393
TV GWG+++ + L ++ +C Y P I + +C
Sbjct: 117 KFENIWATVSGWGQSNTDTVI----LQYTYNLVIDNDRCAQE-YPPGIIVESTICGDTSD 171
Query: 394 EMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCG-RPGYPGVYTRVNRYLSWVKRN 448
C GDSGGP +++ + L+G+VS+ G G G P ++RV Y+ W+++N
Sbjct: 172 GKSPCFGDSGGPFVLS--DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN 225
Score = 131 bits (332), Expect = 7e-36
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 30 IVGGRPTGVNKYPWVARLVYD----GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+ G +P+ A L CG SLI+ ++LTAAHCV + + LG
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH--DAVSVVVYLG 58
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
Q E + I+ H F+ + Y +D+AL+K+ V +T +++PI LP
Sbjct: 59 SAVQY------EGEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSG 111
Query: 146 SEYHTVVKGTMRCRQRAAVLAFGTQRDGSDV 176
E + + A V +G + +
Sbjct: 112 EELNNKFENIW-----ATVSGWGQSNTDTVI 137
Score = 120 bits (303), Expect = 9e-32
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ + + LG Q E + I+ H F+ + Y +D+AL+K+ V +T +
Sbjct: 50 AVSVVVYLGSAVQY------EGEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDN 102
Query: 240 VRPICLPP---DNIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKP 295
++PI LP N TV GWG+++ + L ++ +C Y P
Sbjct: 103 IQPIRLPSGEELNNKFENIWATVSGWGQSNTDTVI----LQYTYNLVIDNDRCAQE-YPP 157
Query: 296 SRITPNMLCA-GRGEMDSCQ 314
I + +C C
Sbjct: 158 GIIVESTICGDTSDGKSPCF 177
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 139 bits (354), Expect = 3e-39
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+D G M GWG+T + EV++ I+ C +Y +C G
Sbjct: 113 PSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY---EYKFQVCVG 169
Query: 392 --RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
+ GDSGGPL+ V GIVS+G +P P ++TRV+ Y+ W+ +
Sbjct: 170 SPTTLRAAFMGDSGGPLLCAGV----AHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVI 223
Score = 135 bits (342), Expect = 2e-37
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
+I ++LG +D T + V + H ++ HDI LLKL K V T
Sbjct: 47 KGREITVILGAHDVRKRESTQQ---KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTP 103
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
+V + LP + G M GWG+T + EV++ I+ C +Y
Sbjct: 104 AVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY--- 160
Query: 298 ITPNMLCAG--RGEMDSCQ 314
+C G +
Sbjct: 161 EYKFQVCVGSPTTLRAAFM 179
Score = 125 bits (316), Expect = 1e-33
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 30 IVGGRPTGVNKYPWVARLVYD----GNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + + P++A L CG LI+ +VLTAAHC +I ++LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----REITVILG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
+D T + V + H ++ HDI LLKL K V T +V + LP
Sbjct: 57 AHDVRKRESTQQ---KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSP 113
Query: 146 SEYHTVVKGTM 156
S+ + G M
Sbjct: 114 SD--FIHPGAM 122
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 139 bits (353), Expect = 6e-39
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
P G+M V GWGRT + EV++ ++ P C + LC G R
Sbjct: 118 PPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC---SHFRDFDHNLQLCVGNPRKT 174
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNMK 450
+ +GDSGGPL+ V GIVS+G +P P V+TR++ Y W+ + ++
Sbjct: 175 KSAFKGDSGGPLLCAGV----AQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQ 224
Score = 134 bits (340), Expect = 5e-37
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
I + LG ++ + +T + V RH ++ + +HDI LLKL++ S T
Sbjct: 47 AGRSITVTLGAHNITEEEDTWQ---KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTL 103
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSR 297
+V + P P G+M V GWGRT + EV++ ++ P C +
Sbjct: 104 AVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC---SHFRDF 160
Query: 298 ITPNMLCAG--RGEMDSCQ 314
LC G R + +
Sbjct: 161 DHNLQLCVGNPRKTKSAFK 179
Score = 126 bits (319), Expect = 5e-34
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 30 IVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLG 85
I+GG + P++A L + CG LI ++VLTAAHC R I + LG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLG 56
Query: 86 DYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPD 145
++ + +T + V RH ++ + +HDI LLKL++ S T +V + P
Sbjct: 57 AHNITEEEDTWQ---KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQ 113
Query: 146 SEYHTVVKGTMRCR 159
V G M CR
Sbjct: 114 FN--FVPPGRM-CR 124
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 138 bits (351), Expect = 1e-38
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR ++P++A + G CG +LI+ +V+TAA C + +VLG YD
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
+ S + +D +D+ LL+L + + T SV + LP +
Sbjct: 61 RRRERQSR---QTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQN--A 115
Query: 150 TVVKGTM 156
TV GT
Sbjct: 116 TVEAGTR 122
Score = 132 bits (334), Expect = 3e-36
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
+G V GWG GG L+ V V + QCR PN +C G
Sbjct: 118 EAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR----------PNNVCTGVLTRR 167
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPGYPGVYTRVNRYLSWVKRNMKD 451
C GD G PL+ + G+ S+ +G CGR P +TRV + W+ + +
Sbjct: 168 GGICNGDGGTPLVCEGL----AHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNN 219
Score = 128 bits (323), Expect = 1e-34
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+VLG YD + S + +D +D+ LL+L + + T SV
Sbjct: 49 GVSTVVLGAYDLRRRERQSR---QTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSV 105
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+ LP N +G V GWG GG L+ V V + QCR
Sbjct: 106 TILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR---------- 155
Query: 300 PNMLCAG--RGEMDSCQ 314
PN +C G C
Sbjct: 156 PNNVCTGVLTRRGGICN 172
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 147 bits (373), Expect = 1e-38
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG 391
+ + GWG T +G A E Q+P++ C ++ R+ LCAG
Sbjct: 670 PNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAG 728
Query: 392 --RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLSWVKRNM 449
G DSCQGDSGGPL+ + +Y L G+ SWG+GC RP PGVY RV+R+++W++ M
Sbjct: 729 HLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788
Query: 450 K 450
+
Sbjct: 789 R 789
Score = 118 bits (297), Expect = 1e-28
Identities = 40/137 (29%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
S +++LG + + VS + DIALLKL P T V
Sbjct: 612 SSYKVILGAHQEVNLEP---HVQEIEVSRLFLE-----PTRK-DIALLKLSSPAVITDKV 662
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
P CLP N + GWG T +G A E Q+P++ C ++ R+
Sbjct: 663 IPACLPSPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQ 721
Query: 300 PNMLCAG--RGEMDSCQ 314
LCAG G DSCQ
Sbjct: 722 STELCAGHLAGGTDSCQ 738
Score = 110 bits (275), Expect = 6e-26
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 10 SDQFKFTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTA 68
+ + R+VGG + +PW L H CG +LI+ ++VLTA
Sbjct: 542 AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTA 601
Query: 69 AHCVRRLKR-SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKL 127
AHC+ + R S +++LG + + VS + DIALLKL
Sbjct: 602 AHCLEKSPRPSSYKVILGAHQEVNLEP---HVQEIEVSRLFLE-----PTRK-DIALLKL 652
Query: 128 RKPVSFTKSVRPICLPPDSEYHTVVKGTM 156
P T V P CLP + + V T
Sbjct: 653 SSPAVITDKVIPACLPSPN--YVVADRTE 679
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 135 bits (341), Expect = 2e-38
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFH-CGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYD 88
IV G +PW L FH CG SLINE++V+TAAHC + +V G++D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG---VTTSDVVVAGEFD 57
Query: 89 QSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEY 148
Q ++E + ++ + ++ ++ N+DI LLKL SF+++V +CLP S
Sbjct: 58 QGSSSEKIQ---KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSAS-- 112
Query: 149 HTVVKGTM 156
GT
Sbjct: 113 DDFAAGTT 120
Score = 93.4 bits (233), Expect = 4e-23
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTK 238
V++ +V G++DQ ++E + ++ + ++ ++ N+DI LLKL SF++
Sbjct: 45 VTTSDVVVAGEFDQGSSSEKIQ---KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQ 101
Query: 239 SVRPICLPPDNID-PSGKMGTVVGWGRT 265
+V +CLP + D +G GWG T
Sbjct: 102 TVSAVCLPSASDDFAAGTTCVTTGWGLT 129
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 136 bits (344), Expect = 1e-37
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
IVGGR + +P++ L G CGA+LI ++V++AAHCV + +R+VLG ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYH 149
S T + + AV I +D N +DI +L+L + +V+ LP
Sbjct: 61 SRREPTRQ---VFAVQRIF-ENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR-- 114
Query: 150 TVVKGTMRC 158
+ ++C
Sbjct: 115 -RLGNGVQC 122
Score = 135 bits (342), Expect = 2e-37
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
+G +GWG +A+ E+ V +++ CR + +C +
Sbjct: 117 GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR----------SNVCTLVRGRQ 165
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNMK 450
C GDSG PL+ N + GI S+ GC YP + V ++++W+ ++
Sbjct: 166 AGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 119 bits (300), Expect = 2e-31
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 18/137 (13%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSV 240
+R+VLG ++ S T + + AV I +D N +DI +L+L + +V
Sbjct: 49 RAVRVVLGAHNLSRREPTRQ---VFAVQRIF-ENGYDPVNLLNDIVILQLNGSATINANV 104
Query: 241 RPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRIT 299
+ LP +G +GWG +A+ E+ V +++ CR
Sbjct: 105 QVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--------- 154
Query: 300 PNMLCAG--RGEMDSCQ 314
+ +C + C
Sbjct: 155 -SNVCTLVRGRQAGVCF 170
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 135 bits (342), Expect = 2e-37
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRITPNMLCAG--RGE 394
P G +GWGR A E+ V +++ P+ +C R +
Sbjct: 120 PHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-----------FFCRPHNICTFVPRRK 168
Query: 395 MDSCQGDSGGPLIINDVGRYELVGIVSWG-VGCGRPGYPGVYTRVNRYLSWVKRNMK 450
C GDSGGPLI + + GI S+ GC +P +TRV Y+ W++ ++
Sbjct: 169 AGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221
Score = 130 bits (329), Expect = 1e-35
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGN---FHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
IVGG + P++A L GN CG +LI+ +VLTAAHC+R + + + +VLG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 87 YDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDS 146
++ T + +V+ + + ++D N +DI L++L P + + SV + LP
Sbjct: 61 HNVRTQEPTQQ---HFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQD 116
Query: 147 EYHTVVKGTM 156
+ V GT
Sbjct: 117 Q--PVPHGTQ 124
Score = 121 bits (305), Expect = 4e-32
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 18/138 (13%)
Query: 180 SSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKS 239
+ +VLG ++ T + +V+ + + ++D N +DI L++L P + + S
Sbjct: 51 QRLVNVVLGAHNVRTQEPTQQ---HFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSAS 106
Query: 240 VRPICLPPDNID-PSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYKPSRI 298
V + LP + P G +GWGR A E+ V +++
Sbjct: 107 VATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVT-----------FFC 155
Query: 299 TPNMLCAG--RGEMDSCQ 314
P+ +C R + C
Sbjct: 156 RPHNICTFVPRRKAGICF 173
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 141 bits (357), Expect = 3e-37
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 332 STDIDPSGKMGTVVGWGRTSEGGSLATEAL------------EVQVPILSPGQCRA---- 375
+ + ++ + E A + +V I + + +
Sbjct: 333 TEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERD 392
Query: 376 ---------MKYKPSRITPNMLCAG----RGEMDSCQGDSGGPLIINDVGRYELVGIVSW 422
+K +TP LC G + ++C+GDSGGPLI++ R+ VG++SW
Sbjct: 393 AQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISW 452
Query: 423 GV--GCGRPG--------YPGVYTRVNRYLSWVKRNMKDTCL 454
GV C + + + L W+K ++D L
Sbjct: 453 GVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDL 494
Score = 129 bits (325), Expect = 7e-33
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAHCV-RR 74
CG+ + T +K PW A++ G+ C ++++E +VLTAAHC
Sbjct: 210 LCGM-----VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 264
Query: 75 LKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNHDIALL 125
K I++ +G + + ++ H ++++N Y++D+AL+
Sbjct: 265 DKEHSIKVSVGGEKRD-----------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALI 313
Query: 126 KLRKPVSFTKSVRPICLPPDSE 147
KL+ + + +++RPICLP
Sbjct: 314 KLKNKLKYGQTIRPICLPCTEG 335
Score = 113 bits (285), Expect = 2e-27
Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 50/173 (28%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNHDIALLKLR 231
I++ +G + + ++ H ++++N Y++D+AL+KL+
Sbjct: 268 HSIKVSVGGEKRD-----------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 316
Query: 232 KPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEAL------------EV 278
+ + +++RPICLP + + ++ + E A +
Sbjct: 317 NKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK 376
Query: 279 QVPILSPGQCRA-------------MKYKPSRITPNMLCAG----RGEMDSCQ 314
+V I + + + +K +TP LC G + ++C+
Sbjct: 377 EVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 429
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 140 bits (355), Expect = 6e-37
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 20 ECGVTNQEVRIVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKR-S 78
CGV + + + PW + C +LI++ +VLTAAHC R S
Sbjct: 219 ICGV-----GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHS 273
Query: 79 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNHDIALLKLRK 129
R+ +GD + V FDV Y DIALLKL +
Sbjct: 274 LWRVNVGDPKSQ-------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQ 326
Query: 130 PVSFTKSVRPICLPPDSE 147
V + RPICLP E
Sbjct: 327 KVKMSTHARPICLPCTME 344
Score = 128 bits (322), Expect = 2e-32
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 36/152 (23%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL--EVQVPILSPG-----QCRAM-----------KY 378
P G ++ A ++ I C +
Sbjct: 352 PQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTD 411
Query: 379 KPSRITPNMLCAG-RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV-----GCGR---- 428
+T LC+G + + C+G+SGG + + R+ VG+VSWG+ G
Sbjct: 412 VREVVTDQFLCSGTQEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSR 471
Query: 429 --------PGYPGVYTRVNRYLSWVKRNMKDT 452
P + + R W+++++ D
Sbjct: 472 KRAPRSKVPPPRDFHINLFRMQPWLRQHLGDV 503
Score = 110 bits (277), Expect = 2e-26
Identities = 33/168 (19%), Positives = 48/168 (28%), Gaps = 41/168 (24%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNHDIALLKLR 231
S R+ +GD + V FDV Y DIALLKL
Sbjct: 273 SLWRVNVGDPKSQ-------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLA 325
Query: 232 KPVSFTKSVRPICLPPDNID------PSGKMGTVVGWGRTSEGGSLATEAL--EVQVPIL 283
+ V + RPICLP P G ++ A ++ I
Sbjct: 326 QKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNIN 385
Query: 284 SPG-----QCRAM-----------KYKPSRITPNMLCAG-RGEMDSCQ 314
C + +T LC+G + + C+
Sbjct: 386 LKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQEDESPCK 433
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 128 bits (322), Expect = 7e-32
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEAL-------EVQVPILSPGQC----RAMKYKPSR--- 382
P A +V I + + R +Y P
Sbjct: 585 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKV 644
Query: 383 ------ITPNMLCAG----RGEMDSCQGDSGGPLIINDVGRYELVGIVSWGV--GCGRPG 430
+TP LC G + ++C+GDSGGPLI++ R+ VG++SWGV C
Sbjct: 645 KDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQK 704
Query: 431 --------YPGVYTRVNRYLSWVKRNMKDTCL 454
+ + + L W+K ++D L
Sbjct: 705 RQKQVPAHARDFHINLFQVLPWLKEKLQDEDL 736
Score = 117 bits (295), Expect = 2e-28
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 30/147 (20%)
Query: 15 FTCLLECGVTNQEVRIVGGRPTGVNKYPWVARLVY----DGNFHCGASLINEDYVLTAAH 70
L CG+ + T +K PW A++ G+ C ++++E +VLTAAH
Sbjct: 447 SQSLSLCGM-----VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAH 501
Query: 71 CV-RRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNH 120
C K I++ +G + + ++ H ++++N Y++
Sbjct: 502 CFTVDDKEHSIKVSVGGEKRD-----------LEIEVVLFHPNYNINGKKEAGIPEFYDY 550
Query: 121 DIALLKLRKPVSFTKSVRPICLPPDSE 147
D+AL+KL+ + + +++RPICLP
Sbjct: 551 DVALIKLKNKLKYGQTIRPICLPCTEG 577
Score = 102 bits (254), Expect = 2e-23
Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 50/173 (28%)
Query: 181 SKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVN---------NYNHDIALLKLR 231
I++ +G + + ++ H ++++N Y++D+AL+KL+
Sbjct: 510 HSIKVSVGGEKRD-----------LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 558
Query: 232 KPVSFTKSVRPICLP-PDNIDPSGKMGTVVGWGRTSEGGSLATEAL------------EV 278
+ + +++RPICLP + + ++ + E A +
Sbjct: 559 NKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK 618
Query: 279 QVPILSPGQC----RAMKYKPSR---------ITPNMLCAG----RGEMDSCQ 314
+V I + + R +Y P +TP LC G + ++C+
Sbjct: 619 EVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 671
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 82.6 bits (205), Expect = 7e-20
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 30 IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQ 89
I+GGR N +PW + + +F CG L+N +VLTAAHC + LG ++
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK----NDNYEVWLGRHNL 56
Query: 90 SVTTETAEPTMMRAVSSIVRHRHFD 114
TA+ V++ H F+
Sbjct: 57 FENENTAQ---FFGVTADFPHPGFN 78
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 179 VSSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFD 217
+ + LG ++ TA+ V++ H F+
Sbjct: 43 KNDNYEVWLGRHNLFENENTAQ---FFGVTADFPHPGFN 78
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 59.2 bits (143), Expect = 2e-10
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 30 IVGG-----RPTGVNKYPW--VARLVYDGNFHCGASLINEDYVLTAAHCV----RRLKRS 78
+V G + P+ +A + + G+ C +LI + +LT HCV R +
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSS-CTGTLIAPNKILTNGHCVYNTASRSYSA 59
Query: 79 KIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVS 132
K + G D + +A V + + +D A++K +
Sbjct: 60 KGSVYPGMNDSTAVNGSA-----NMTEFYVPSGYINTGASQYDFAVIKTDTNIG 108
Score = 53.4 bits (128), Expect = 2e-08
Identities = 13/131 (9%), Positives = 37/131 (28%), Gaps = 23/131 (17%)
Query: 319 RRPTESHLHFHFLSTDIDPSGKMGTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKY 378
+ + + + + +G + G+ M
Sbjct: 104 DTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRS-------------TGKVSQWEMSG 150
Query: 379 KPSRITPNMLCAGRGEMDSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRV 438
+R N+ +D+ G+SG ++ ++VG+ + G G +
Sbjct: 151 SVTREDTNLAYYT---IDTFSGNSGSAMLD---QNQQIVGVHNAGYSNGTING---GPKA 201
Query: 439 N-RYLSWVKRN 448
++ ++
Sbjct: 202 TAAFVEFINYA 212
Score = 31.5 bits (71), Expect = 0.45
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 205 RAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDNIDPSGKMGTVVGWGR 264
V + + +D A++K + +V + + +G + G+
Sbjct: 78 NMTEFYVPSGYINTGASQYDFAVIKTDTNIG--NTVGYRSIRQ-VTNLTGTTIKISGYPG 134
Query: 265 TSEGGSLATEALEVQVPILSPGQCR 289
+ E+ +
Sbjct: 135 DKMRSTGKVSQWEMSGSVTREDTNL 159
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 48.5 bits (115), Expect = 1e-06
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 38 VNKYPWVARLVYD---GNFHCGASLI---NEDYVLTAAHCV----RRLKRSKIRIVLGDY 87
P + ++ + G+F C A+++ N+ V TA HC+ Y
Sbjct: 3 PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPA-Y 61
Query: 88 DQSVTTETAEPTMMRAVSSIVRHRHFDVN-NYNHDIALLKLRKPVS 132
D + A +V + ++ HD A L
Sbjct: 62 DYG-----ESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGG 102
Score = 45.5 bits (107), Expect = 1e-05
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 3/109 (2%)
Query: 330 FLSTDIDPSGKMGTVVGWGRTSEGGSLATEAL-EVQVPILSPGQCRAMKYKPSRITPNML 388
F + + VG + P +P + + T + +
Sbjct: 94 FAVLETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPM 153
Query: 389 CAGRGEMDS--CQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVY 435
+ + G SGGP + + S+G G Y
Sbjct: 154 GSSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVMFGPY 202
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 49.0 bits (116), Expect = 1e-06
Identities = 18/156 (11%), Positives = 35/156 (22%), Gaps = 21/156 (13%)
Query: 36 TGVNKYPW--VARLVY---DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
T + V + G F ++ +D +LT H V + +
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHT 150
+ + D+A++K + S
Sbjct: 72 QDN---------YPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAE 122
Query: 151 VVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV 186
+ G D + SK +I
Sbjct: 123 TQTNQ-------NITVTGYPGDKPVATMWESKGKIT 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 3e-06
Identities = 54/330 (16%), Positives = 94/330 (28%), Gaps = 114/330 (34%)
Query: 12 QFKFTCLLECGVTNQEVR--IVGGRPTGVNKYPWVARLVYDGNFHCGASLINEDYVLTAA 69
+ T L G T E+R + G TG ++ A + + E + ++
Sbjct: 248 HYVVTAKL-LGFTPGELRSYLKGA--TGHSQGLVTAVAI-------AETDSWESFFVSVR 297
Query: 70 HCVRRL----KRS-----KIRIVLGDYDQSVTTETAEPTMMRAVS--------SIVRH-- 110
+ L R + + S+ P+ M ++S V
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 111 RHFD---------VNNYNH-------------DIALLKL---------------RKPVSF 133
H VN + ++ L K RK F
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-F 416
Query: 134 TKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRI-VLGDYDQ 192
+ P+ P +H+ + A ++V + I+I V YD
Sbjct: 417 SNRFLPVASP----FHSH---LL----VPASDLINKDLVKNNVSFNAKDIQIPV---YD- 461
Query: 193 SVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP-----ICLPP 247
T +R +S + R D I +R PV + + + + P
Sbjct: 462 ---TFDGSD--LRVLSGSISERIVDC------I----IRLPVKWETTTQFKATHILDFGP 506
Query: 248 DNIDPSGKMGTVV-----GWG-RTSEGGSL 271
SG +G + G G R G+L
Sbjct: 507 GGA--SG-LGVLTHRNKDGTGVRVIVAGTL 533
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 67/457 (14%), Positives = 132/457 (28%), Gaps = 150/457 (32%)
Query: 1 MDFEKN-------NIIS---DQFK--FTC-----LLECGVTNQEVRIVGGRPTGVNK--- 40
MDFE +I+S D F F C + + ++ +E+ + V+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 41 ------------------------YPWVA-RLVYDGNFHCGASLINEDYV---------- 65
Y ++ + + S++ Y+
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDN 123
Query: 66 -LTAAHCVRRLKR-SKIRIVLGDYDQSV------------TTETAEPTMMRAVSSIVRHR 111
+ A + V RL+ K+R L + + T + S
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-----VCLSYKVQC 178
Query: 112 HFDVNNYNHDIALLKL---RKPVSFTKSVRPICLPPDSEYHTVVKGTMRCRQRAAVLAFG 168
D I L L P + + ++ + D + + + + R +
Sbjct: 179 KMDFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 169 TQRDGSDVKLVSSKIR----IVLGD-YDQS------------VTTETAEPTMMRAVSSIV 211
+R L+ SK +VL + + +TT + T +S+
Sbjct: 234 LRR------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAAT 285
Query: 212 RHRHFDVNNYNHDIALLKLRKPVS-FTK--SVRPICLPPD--NIDP----------SGKM 256
H ++ H L + S K RP LP + +P +
Sbjct: 286 T-THISLD---HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 257 GTVVGWGRTSEGGSLATEALEVQVPILSPGQCRAMKYK-----P--SRITPNMLC----A 305
T W + L T +E + +L P + R M + P + I +L
Sbjct: 342 ATWDNW-KHVNCDKL-TTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFD 398
Query: 306 GRGE-----MDSCQD--LAPRRPTESHLHFHFLSTDI 335
++ L ++P ES + + ++
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 45.3 bits (107), Expect = 2e-05
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 10/159 (6%)
Query: 36 TGVNKYPWVARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTET 95
+ Y V + G+ LI ++ ++T H R ++ I+ +
Sbjct: 31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKN 90
Query: 96 AEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHTVVKGT 155
PT D+A++KL+ + I ++ + KG
Sbjct: 91 EFPTPYGKFE--AEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGD 148
Query: 156 MRCRQRAAVLAFGTQRDGSDVKLVSSKIRIV-LGDYDQS 193
G + S L S+I + Y
Sbjct: 149 -------KYSLLGYPYNYSAYSLYQSQIEMFNDSQYFGY 180
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 42.7 bits (100), Expect = 1e-04
Identities = 20/169 (11%), Positives = 41/169 (24%), Gaps = 22/169 (13%)
Query: 36 TGVNKYPW--VARLV---YDGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGDYDQS 90
T + V + G F ++ +D +LT H V + +
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 91 VTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRPICLPPDSEYHT 150
P I + D+A++K + S
Sbjct: 72 QDN---YPNGGFTAEQIT------KYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAE 122
Query: 151 VVKGTMRCRQRAAVLAFGTQRDGSDVKLVSSKIRIVLGDYDQSVTTETA 199
+ G D + SK +I +++ + +
Sbjct: 123 TQVNQ-------NITVTGYPGDKPVATMWESKGKIT-YLKGEAMQYDLS 163
Score = 27.3 bits (60), Expect = 9.7
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 396 DSCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYL 442
+ G+SG P+ N+ E++GI GV G + V +L
Sbjct: 163 STTGGNSGSPV-FNEKN--EVIGIHWGGVPNEFNGAVFINENVRNFL 206
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
+ GDSGGP + + G+ S G G R G + +N LS
Sbjct: 135 AEGGDSGGPWLTGS----QAQGVTSGGTGDCRSGGITFFQPINPLLS 177
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
+ GDSGGPL +G+ S G G G + V LS
Sbjct: 136 AEPGDSGGPLYSGT----RAIGLTSGGSGNCSSGGTTFFQPVTEALS 178
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 38.0 bits (88), Expect = 0.002
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
+ GDSGG I + G+ S G G R G Y VN L+
Sbjct: 138 AEPGDSGGSFISGT----QAQGVTSGGSGNCRTGGTTFYQEVNPMLN 180
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 37.9 bits (88), Expect = 0.003
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
S GDSGG +GI S GC ++ V LS
Sbjct: 138 SAGGDSGGAHFAGS----VALGIHSGSSGCSGTAGSAIHQPVTEALS 180
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 37.6 bits (87), Expect = 0.003
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
+ GDSGG L+ + + G+ S G G R G + VN L
Sbjct: 132 AEPGDSGGSLLAGN----QAQGVTSGGSGNCRTGGTTFFQPVNPILQ 174
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 37.7 bits (86), Expect = 0.006
Identities = 21/99 (21%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 44 VARLVYDGNFHCGASLINED------YVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAE 97
V G C SL+N Y LTA HC + IV+ Q+ T
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 98 PTMMRAVSSIVRHR-----HFDVNNYNHDIALLKLRKPV 131
A + D LL+L
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAA 123
Score = 34.6 bits (78), Expect = 0.051
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 11/125 (8%)
Query: 337 PSGKMGTVVGWGRTSEGGSLATEALEVQVPI----LSPGQCRAMKYKPSRITPNMLCAGR 392
GW R + A V S + + T ++ +
Sbjct: 124 NPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQ 183
Query: 393 GEMDSCQGDSGGPLIINDVGRYELVGIVSWGVG-CGRPG--YPGVYTRVNRYLSWVKRNM 449
+ S G I + R +G + G C G Y RV SW
Sbjct: 184 PSGGVTEPGSSGSPIYSPEKRV--LGQLHGGPSSCSATGTNRSDQYGRVFT--SWTGGGA 239
Query: 450 KDTCL 454
+ L
Sbjct: 240 AASRL 244
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 34.9 bits (80), Expect = 0.026
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 397 SCQGDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPGVYTRVNRYLS 443
+ GDSGG L +G+ S G G R G Y V LS
Sbjct: 132 AQPGDSGGSLFAGS----TALGLTSGGSGNCRTGGTTFYQPVTEALS 174
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1;
3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Length = 71
Score = 29.5 bits (67), Expect = 0.31
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 50 DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
+ F L + +L A+ +++ IRI+ GD
Sbjct: 19 NATFRV--KLDSGPEIL--AYISGKMRMHYIRILPGD 51
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 31.8 bits (72), Expect = 0.41
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 59 LINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY 118
LI ++ VLT H + ++ + E + +
Sbjct: 61 LIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQ---EPFGA 117
Query: 119 NHDIALLKLRKP 130
D+AL++L+
Sbjct: 118 GVDLALIRLKPD 129
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA
interaction, OB fold; NMR {Escherichia coli} SCOP:
b.40.4.5
Length = 71
Score = 29.1 bits (66), Expect = 0.43
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 50 DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
+ F L N V AH +++++ IRI+ GD
Sbjct: 18 NTMFRV--ELENGHVVT--AHISGKMRKNYIRILTGD 50
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein
biosynthesis; 1.47A {Mycobacterium tuberculosis}
Length = 79
Score = 29.2 bits (66), Expect = 0.50
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 50 DGNFHCGASLINEDYVLTAAHCVRRLKRSKIRIVLGD 86
+ F L N VL AH ++++ IRI+ D
Sbjct: 26 NAMFRI--ELENGHKVL--AHISGKMRQHYIRILPED 58
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 29.9 bits (67), Expect = 1.1
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 400 GDSGGPLIINDVGRYELVGIVSWGVGCGRPGYPG--------VYTRVNRYLS 443
GDSGG I + + G++S G G ++ R+ LS
Sbjct: 141 GDSGGSWITSAG---QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILS 189
>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase;
2.50A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB:
3s8r_A 1oqz_A
Length = 689
Score = 30.3 bits (68), Expect = 1.6
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 402 SGGPLIIND--------VGRYELVGIVSWG---VGCGRPGYPGVYTRVNRYLSW 444
+G L++ + Y +V+ G + G P + N+ +
Sbjct: 182 NGNALLLQNPHLSWTTDYFTYYEAHLVTPDFEIYGATQIGLPVIRFAFNQRMGI 235
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 29.6 bits (65), Expect = 2.8
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 31/136 (22%)
Query: 22 GVTNQEVRIVGGRPTGVNKYPWV--ARLVYDGNFHCGASLINEDYVLTAAHCVRRLKRSK 79
G TN E+ G + + P+ + + G+ + I Y +TA H ++
Sbjct: 26 GATNIEIVKKDGSTLKLPEVPFPDFSPVANKGS----TTSIGGAYSITATHNT----KNH 77
Query: 80 IRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNYNHDIALLKLRKPVSFTKSVRP 139
+ ++ S ++ D N + D A+ +L K F R
Sbjct: 78 HSVATQNWGNS------------------TYKQTDWNTSHPDFAVSRLDK---FVVETRG 116
Query: 140 ICLPPDSEYHTVVKGT 155
D
Sbjct: 117 ATEGADISLSKQQALE 132
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 28.7 bits (64), Expect = 3.2
Identities = 7/69 (10%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 59 LINEDYVLTAAHCVRRLKRSKIRIVLGDYDQSVTTETAEPTMMRAVSSIVRHRHFDVNNY 118
++ ++ +LT H + K + D+ + I+ ++
Sbjct: 28 VVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSI-------KKII---NYP---G 74
Query: 119 NHDIALLKL 127
D++++++
Sbjct: 75 KEDVSVIQV 83
Score = 28.3 bits (63), Expect = 4.6
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 399 QGDSGGPLIINDVGRYELVGIVSWGVG 425
G+SG P+ +N ELVGI
Sbjct: 154 SGNSGSPV-LNSNN--ELVGIHFASDV 177
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 28.5 bits (63), Expect = 5.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 321 PTESHLHFHFLSTDIDPSG 339
P+ HLH HF + + G
Sbjct: 282 PSYYHLHVHFTALGFEAPG 300
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm,
hydrolase, nonsense-mediated mRNA decay, nucleus,
polymorphism, structural genomics; HET: DD2; 1.80A {Homo
sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A*
Length = 301
Score = 27.6 bits (61), Expect = 7.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 321 PTESHLHFHFLSTDIDPSG 339
P+ HLH HF + + G
Sbjct: 235 PSYYHLHVHFTALGFEAPG 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,233,310
Number of extensions: 444163
Number of successful extensions: 1947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1120
Number of HSP's successfully gapped: 315
Length of query: 457
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,993,456
Effective search space: 1437644160
Effective search space used: 1437644160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)