BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6525
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 4/175 (2%)
Query: 149 LLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
L+ + C C ++F+ +L +H++ H G K YKC ECGK ++ +L +H +H
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 208 KG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLE 265
G + C C K+F+ RA L H + H+ E+ + C CGK H H R H G +
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 266 VHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ 320
++C C K F+ + +L H + H Y+C C K ++ + L H R H G+
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 4/184 (2%)
Query: 166 FNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHR 224
F S S + Q E Y C ECGK ++++ +L +H +H G + C C K+F+ +
Sbjct: 4 FGSSSSVAQAALEPGE-KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 225 ALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQ 283
L RH + H+ E+ +KC CGK + H R H G + + C C K F+ L+
Sbjct: 63 KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR 122
Query: 284 DHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIR 342
H + H Y+C C K ++ + L H R H G+ YKC CG ++ + L H R
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Query: 343 LHQG 346
H G
Sbjct: 183 THTG 186
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 3/161 (1%)
Query: 194 YTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQ 252
+ ++++ Q L + C C K+F+ L H + H+ E+ +KC CGK +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 253 HYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEK 312
RH R H G + ++C C K F+ + +L+ H + H Y C C K ++ L
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 313 HIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGH-TYMC 351
H R H G+ YKC CG ++ + L H R H G Y C
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C K+FTH++ RHM H R + C +CGK H + HM+IH G++ +ECN+CAK
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 276 FACKRSLQDHM 286
F + S H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 244 CGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQ 303
CGK + RHM +H GL + C +C K F K L HM+ H Y+C +C K+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 304 YASKKMLEKHI 314
+ + +H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 262 QGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEG-Q 320
G +++ C C K F K HM H Y C +C K++ K L H++ H G +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 321 DYKCYICGNRYATQKYLEEHI 341
Y+C IC R+ + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEG-QDYKCYICGNRYATQKYLEEHIRLHQG-HTYMCN 352
Y C C K + K ++H+ H G + Y C +CG ++ + +L H+++H G Y CN
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGI-FFICFHCNK 219
C ++F +S +H H G++ Y C CGK + +L HM H GI + C C K
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 220 NFTHRALLVRHM 231
F R RH+
Sbjct: 74 RFMWRDSFHRHV 85
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFIC 214
+KC C ++F+ S LQ+H++ H G K YKC ECGK ++Q+++L++H +H G + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 215 FHCNKNFTHRALLVRHMQKHSSER 238
C K+F+ L RH + H +++
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNKK 87
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 265 EVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYK 323
+ ++C C K F+ +LQ H + H Y+C C K ++ L+KH R H G+ YK
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 324 CYICGNRYATQKYLEEHIRLHQ 345
C CG ++ +L H R HQ
Sbjct: 63 CPECGKSFSRSDHLSRHQRTHQ 84
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCA 298
+KC CGK + +H R H G + ++C C K F+ LQ H + H Y+C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 299 MCKKQYASKKMLEKHIRRHE 318
C K ++ L +H R H+
Sbjct: 65 ECGKSFSRSDHLSRHQRTHQ 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGH-TYMC 351
Y+C C K ++ L+KH R H G+ YKC CG ++ L++H R H G Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKGI-FFICFHCNKNFTHRALLVRHMQKHSSER-FKCD 242
+KC+ CGKC+++ LK HM H G+ + C C+ + L +H++ HS ER FKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 243 LCGKVTPYYQHYLRHMRIHQG 263
+C + H+R H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 267 HECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCY 325
H+C +C K F+ K L+ HM+ H Y+C C A L KH+R H + +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 326 ICGNRYATQKYLEEHIRLHQG 346
IC L H+R H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 235 SSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNK 294
SS KC++CGK HMR H G++ ++C C A SL H++ H +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEG 319
++C +C + L H+R H G
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 131 QCNVCFLMLNNRCYTRFHLLKHNWVR-FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKE 189
+C VC + + + H+ H V+ +KC C S L +H + + +KC+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 190 CGKCYTQNTNLKQHMLSHKG 209
C ++ L H+ SH G
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ K +L H++ H +QC +C + ++ L +HIR H G+ + C ICG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+AT + H ++H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++Q TNL H+ H G F C C +NF+ L +H++ H+ E+ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 241 CDLCGKVTPYYQHYLRHMRIH 261
CD+CG+ RH +IH
Sbjct: 65 CDICGRKFATLHTRDRHTKIH 85
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ K L+ HIR H GQ ++C IC ++ L +HIR H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 349 Y----MCNAKFS 356
+C KF+
Sbjct: 62 PFACDICGRKFA 73
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRR 316
H+RIH G + +C +C + F+ L H++ H + C +C +++A+ ++H +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI 84
Query: 317 H 317
H
Sbjct: 85 H 85
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ + L H++ H+ ++ F+C +C + + +H+R H G + C++C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 276 FACKRSLQDHMQRH 289
FA + H + H
Sbjct: 72 FATLHTRDRHTKIH 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 268 ECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYI 326
+C +C K F +L H+ H + Y C C K++ K ++KH H G+ +KC +
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 327 CGNRYATQKYLEEHIRLHQG 346
CG ++ L H R H G
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
F C C K+F + L H+ HS R + C CGK +H IH G + H+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 271 LCAKLFACKRSLQDHMQRH 289
+C K F+ +L H ++H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCA 298
F C +CGK H+ IH + C C K F K ++ H H ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 299 MCKKQYASKKMLEKHIRRHEG 319
+C K ++ L H R+H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 130 FQCNVCFLMLNNRCYTRFHLLKHNWVR-FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F C +C HLL H+ R + C C + F+ +S +++H H G K +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 188 KECGKCYTQNTNLKQHMLSHKG 209
+ CGK ++Q++NL H H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKG-IFFICF 215
F C +C ++F S L H + Y C+ CGK + Q +++K+H H G C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 216 HCNKNFTHRALLVRHMQKHSS 236
C K F+ + L+ H +KH+
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ K +L H++ H +QC +C + ++ + L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+AT H ++H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++Q TNL H+ H G F C C +NF+ +A L H++ H+ E+ F
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 241 CDLCGKVTPYYQHYLRHMRIH 261
CD+CG+ RH +IH
Sbjct: 65 CDICGRKFATLHTRTRHTKIH 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ K L+ HIR H GQ ++C IC ++ Q L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 349 Y----MCNAKFS 356
+C KF+
Sbjct: 62 PFACDICGRKFA 73
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRR 316
H+RIH G + +C +C + F+ + SL H++ H + C +C +++A+ +H +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKI 84
Query: 317 H 317
H
Sbjct: 85 H 85
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ ++ L H + H G K ++C+ C + ++Q +L H+ +H G F C C +
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFATLHTRTRHTKIH 85
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 105 CDEILKDIDDLRYHGLLHATPLGTQFQCNVCFLMLNNRCYTRFHLLKHNWVR-FKCDLCS 163
CD +L H +H FQC +C + + H+ H + F CD+C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTG--QKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 164 RTFNSQSYLQQHKK 177
R F + +H K
Sbjct: 70 RKFATLHTRTRHTK 83
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMR---IHQGLEVHEC 269
C C+K F + L H +KH+ E+ F+C CGK ++ L H +++ +V C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 270 NLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKH-IRRHEGQD 321
++C + F + L+ HM H Y+C+ C +Q+ KK L+ H I+ H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 158 KCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQH----MLSHKGIFF 212
+C C + F S+ YL+ H + H G K ++C +CGKCY + NL +H ++ F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 213 ICFHCNKNFTHRALLVRHMQKHSSE-RFKCDLCGKVTPYYQHYLRHM-RIHQG 263
C C + F R L HM H+ E +KC C + + HM ++H G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 268 ECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH----EGQDYK 323
EC C K F K L+ H ++H ++C C K Y K+ L +H R+ Q +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 324 CYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
C +C + + L H+ H G Y C++
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 96 DTKNVLCYICDEILKDIDDLRYHGLLHATPLGTQFQCNVCFLMLNNRCYTRFHLLKHNWV 155
+ V C C + L+ H H F+C C +CY R L +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGE--KPFECPKC-----GKCYFRKENLLEHEA 56
Query: 156 R---------FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHML 205
R F C +C TF + L+ H + YKC C + + Q +L+ HM+
Sbjct: 57 RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 188 KECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSER-FKCDL--C 244
K C K + N+ +++H+ +H +C C K F + L RH H+ E+ F+C C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 245 GKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRHEEPNKYQ 296
GK + H+RIH G + C C K FA +L+ H+ H + Q
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYI--CG 328
C K+F +++ H+ H P + CA C K + L++H H G+ ++C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 329 NRYATQKYLEEHIRLHQG-HTYM-----CNAKFS 356
R++ L H+R+H G Y+ CN KF+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFA 105
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKH 313
+H+ H G VH C C K F L+ H H +QC C K+++ L H
Sbjct: 25 KHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Query: 314 IRRHEG-QDYKCYI--CGNRYATQKYLEEHIRLH 344
+R H G + Y C C ++A L+ HI H
Sbjct: 84 VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 291 EPNKYQCA--MCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEHIRLHQG 346
EP C C K + + KH+ H + + C CG + L+ H +H G
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTG 59
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ SL H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 62 PFACDICGRKFARSDE 77
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ +L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++ ++NL +H+ H G F C C +NF+ L H++ H+ E+ F
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 241 CDLCGKVTPYYQHYLRHMRIH 261
CD+CG+ RH +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ + L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 62 PFACDICGRKFARSDE 77
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ S L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 268 ECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYI- 326
C +C K+F L H H Y C +C ++ K + H+R H+G K YI
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 327 --CGNRYATQKYLEEHIR-LHQG 346
CG ++ +L HI+ +H G
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 96 DTKNVLCYICDEILKDIDDLRYHGLLHATPLGTQFQCNVCFLMLNNRCYTRFHLLKHNWV 155
+ V C IC +I +D+ L H L H+ + C VC L + +H+ H+
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGE--KPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 156 RFK---CDLCSRTFNSQSYLQQHKKHDHEG 182
K C C + F+ +L H K H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 235 SSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEP-- 292
S C++CGK+ H RH H G + + C +C F K + H++ H+
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 293 NKYQCAMCKKQYASKKMLEKHIRR-HEGQD 321
Y C C K ++ L HI++ H G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 159 CDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF---FIC 214
C++C + F +L +HK H G K Y C CG + + + H+ SH G +IC
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 215 FHCNKNFTHRALLVRHMQK 233
C K F+ L H+++
Sbjct: 69 QSCGKGFSRPDHLNGHIKQ 87
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG--LEVHECN 270
C C K F L RH HS E+ + C +CG H+R H G + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 271 LCAKLFACKRSLQDHM-QRHEEPN 293
C K F+ L H+ Q H P+
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
R+KCD C ++F+ S L +H++ H G K YKC ECGK + Q ++L H H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ C C K+F+H + L +H + H+ E+ +KCD CGK H + H R+H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 291 EPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQG 346
E +Y+C C K ++ L KH R H G+ YKC CG + + +L H R+H G
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 231 MQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
Q+ R+KCD CGK + +H R H G + ++C+ C K F + L H + H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 268 ECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEG 319
+C+ C K F+ L H + H Y+C C K + + L H R H G
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ A L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 62 PFACDICGRKFARSDE 77
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ + L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ A L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 62 PFACDICGRKFARSDE 77
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ + L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 62 PFACDICGRKFARSDE 77
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++++ L +H+ H G F C C +NF+ L H++ H+ E+ F
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 241 CDLCGKVTPYYQHYLRHMRIH 261
CD+CG+ RH +IH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 276 FA 277
FA
Sbjct: 71 FA 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGHT 348
E P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 349 Y----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 61 PFACDICGRKFARSDE 76
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 23 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Query: 316 RH 317
H
Sbjct: 83 IH 84
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 70 KFARSDERKRHTKIH 84
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNR 330
C + F+ L H++ H +QC +C + ++ L HIR H G+ + C ICG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 331 YATQKYLEEHIRLH 344
+A + H ++H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 289 HEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQGH 347
HE P C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 348 TY----MCNAKFSFNEQ 360
+C KF+ +++
Sbjct: 61 KPFACDICGRKFARSDE 77
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++++ L +H+ H G F C C +NF+ L H++ H+ E+ F
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 241 CDLCGKVTPYYQHYLRHMRIH 261
CD+CG+ RH +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKL 275
C++ F+ L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 276 FA 277
FA
Sbjct: 72 FA 73
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH+RIH G + +C +C + F+ L H++ H + C +C +++A ++H +
Sbjct: 24 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Query: 316 RH 317
H
Sbjct: 84 IH 85
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNK 219
C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H G F C C +
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 220 NFTHRALLVRHMQKH 234
F RH + H
Sbjct: 71 KFARSDERKRHTKIH 85
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 260 IHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEG 319
I G + C +C + + C SL+ H H KY C C+K + + KH H G
Sbjct: 16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG 75
Query: 320 Q-DYKCYICGNRYATQKYLEEHIR 342
+ Y+C CG + +++ HI+
Sbjct: 76 ERRYQCLACGKSFINYQFMSSHIK 99
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 210 IFFICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHE 268
+++IC C +++ L RH HS E+ + C C KV P ++ +H H G ++
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 269 CNLCAKLFACKRSLQDHMQ 287
C C K F + + H++
Sbjct: 81 CLACGKSFINYQFMSSHIK 99
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
RH IH + + C C K+F H H +YQC C K + + + + HI+
Sbjct: 40 RHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
Query: 316 RHEGQD 321
QD
Sbjct: 100 SVHSQD 105
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 147 FHLLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLS 206
+ L+ V + C +C R++ + L++H KY C+ C K + +H +
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 207 HKG-IFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQ 262
H G + C C K+F + + H++ S+ D G Y H R ++I Q
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQ----DPSGDSKLYRLHPCRSLQIRQ 125
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 146 RFHLLKHNWVR-FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHM 204
R H H+W + + C C + F Y +H+ H +Y+C CGK + + H+
Sbjct: 39 RRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
Query: 205 LS 206
S
Sbjct: 99 KS 100
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 282 LQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEG-QDYKCYICGNRYATQKYLE 338
LQ H ++H YQC C+++++ L++H RRH G + ++C C +++ +L+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 339 EHIRLHQG 346
H R H G
Sbjct: 84 THTRTHTG 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 239 FKCDLCGKVTPYYQ--HYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRHEEPNK 294
F C G Y++ H H R H G + ++C+ C + F+ L+ H +RH
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYI--CGNRYATQKYLEEHIRLH 344
+QC C+++++ L+ H R H G+ + C C ++A L H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 212 FICFH--CNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEV 266
F+C + CNK + + L H +KH+ E+ ++CD C + RH R H G++
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 267 HECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKH 313
+C C + F+ L+ H + H E+P + C+K++A L +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 132 CNVCFLMLNNRCYTRFHLLKHNWVR-FKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKC 187
CN + L+ + + H KH + ++CD C R F+ L++H++ H GVK ++C
Sbjct: 14 CNKRYFKLS---HLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQC 69
Query: 188 KECGKCYTQNTNLKQHMLSHKG-IFFIC--FHCNKNFTHRALLVRHMQKH 234
K C + ++++ +LK H +H G F C C K F LVRH H
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 244 CGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAMCK 301
C KV H H+R H G + ++C C FA L H ++H +QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 302 KQYASKKMLEKHIRRHE 318
+ ++ L H++RH+
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 266 VHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEG-Q 320
+H C+ C K++ L+ H++ H Y+C C ++A L +H R+H G +
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 321 DYKCYICGNRYATQKYLEEHIRLHQ 345
++C +C ++ +L H++ HQ
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 190 CGKCYTQNTNLKQHMLSHKG-IFFICF--HCNKNFTHRALLVRHMQKHSSER-FKCDLCG 245
C K YT++++LK H+ +H G + C C+ F L RH +KH+ + F+C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 246 KVTPYYQHYLRHMRIHQ 262
+ H HM+ HQ
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKGI-FFICFHC 217
C++ + S+L+ H + H G K YKC + C + ++ L +H H G F C C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 218 NKNFTHRALLVRHMQKH 234
N++F+ L HM++H
Sbjct: 82 NRSFSRSDHLALHMKRH 98
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 300 CKKQYASKKMLEKHIRRHEGQ-DYKCYI--CGNRYATQKYLEEHIRLHQG----HTYMCN 352
C K Y L+ H+R H G+ YKC C R+A L H R H G +CN
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 353 AKFS 356
FS
Sbjct: 83 RSFS 86
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 189 ECGKCYTQNTNLKQHMLSHKG-IFFICFH--CNKNFTHRALLVRHMQKHSSER-FKCDLC 244
+CG Y +N L+ H+ H G F C C K FT L RH H+ E+ F CD
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 245 G------KVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCA 298
G +H+ R I + V C K F L+ H H + Y+C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 299 --MCKKQYASKKMLEKHIRRHEG----QDYKCYICGNRYATQKYLEEHIRLHQ 345
C K+++ L++H + H G +D C G + YL+ HQ
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--YLKHVAECHQ 189
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
FIC C ++FT L+ H + H+ ER + CD+C K H H IH + +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 271 LCAKLFACKRSLQDHMQRHEEPNKYQCA 298
C K F R+L H H + + A
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSH 207
+ CD+C + F Q +L+ H+ + +KC+ECGK + Q+ L H H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 235 SSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNK 294
+ + F C CG+ + L H R H + C++C K F + L+DH H +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 295 YQCAMCKKQYASKKMLEKH 313
++C C K + + L H
Sbjct: 74 FKCQECGKGFCQSRTLAVH 92
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 269 CNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYIC 327
C C + F +L H + H + Y C +C K + + L H H + +KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 328 GNRYATQKYLEEHIRLH 344
G + + L H LH
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
+ C C + F+ S L QH++ H G K YKC ECGK ++QN+ L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSS 236
Y C ECGK +++++ L QH H G + C C K F+ + L+ H + H+S
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIH 261
+ C C K F+ ++LV+H + H+ E+ +KC CGK + H RIH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLH 344
E+P Y C C K ++ +L +H R H G+ YKC CG ++ L H R+H
Sbjct: 12 EKP--YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
+ C CGK ++H R+H G + ++C C K F+ L +H + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 244 CGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAMCK 301
CGK H H+R H G + + C+ C FA L H ++H +QC C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 302 KQYASKKMLEKHIRRH 317
+ ++ L H++RH
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 190 CGKCYTQNTNLKQHMLSHKGIFFICFHCNKN-----FTHRALLVRHMQKHSSER-FKCDL 243
CGK YT++++LK H+ +H G +HC+ + F L RH +KH+ R F+C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGE--KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 244 CGKVTPYYQHYLRHMRIH 261
C + H HM+ H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 266 VHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEG-Q 320
H C+ C K + L+ H++ H Y C C ++A L +H R+H G +
Sbjct: 6 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Query: 321 DYKCYICGNRYATQKYLEEHIRLH 344
++C C ++ +L H++ H
Sbjct: 66 PFQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 298 AMCKKQYASKKMLEKHIRRHEGQ-DYKCYI--CGNRYATQKYLEEHIRLHQGH 347
A C K Y L+ H+R H G+ Y C CG ++A L H R H GH
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHC 217
C +T+ S+L+ H + H G K Y C CG + ++ L +H H G F C C
Sbjct: 14 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 218 NKNFTHRALLVRHMQKH 234
++ F+ L HM++H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 244 CGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAMCK 301
CGK H H+R H G + + C+ C FA L H ++H +QC C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 302 KQYASKKMLEKHIRRH 317
+ ++ L H++RH
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 190 CGKCYTQNTNLKQHMLSHKGIFFICFHCNKN-----FTHRALLVRHMQKHSSER-FKCDL 243
CGK YT++++LK H+ +H G +HC+ + F L RH +KH+ R F+C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGE--KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 244 CGKVTPYYQHYLRHMRIH 261
C + H HM+ H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 266 VHECNL--CAKLFACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEG-Q 320
H C+ C K + L+ H++ H Y C C ++A L +H R+H G +
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 321 DYKCYICGNRYATQKYLEEHIRLH 344
++C C ++ +L H++ H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 298 AMCKKQYASKKMLEKHIRRHEGQ-DYKCYI--CGNRYATQKYLEEHIRLHQGH 347
A C K Y L+ H+R H G+ Y C CG ++A L H R H GH
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHC 217
C +T+ S+L+ H + H G K Y C CG + ++ L +H H G F C C
Sbjct: 13 CGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 218 NKNFTHRALLVRHMQKH 234
++ F+ L HM++H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 259 RIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPN----KYQCAMCKKQYASKKMLEKHI 314
R H G + + C+ C K F K+ L H +R+ +PN + C+ C K + + + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 315 RRHEGQD 321
G D
Sbjct: 68 DNCAGPD 74
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHE----GVKYKCKECGKCYTQNTNLKQH 203
+ C C +TF + L H K H+ + C +CGK +T+ + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 289 HEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-----YKCYICGNRYATQKYLEEH 340
H Y C+ C K + K++L+ H +R+ + + C CG + + + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-----FKCDLCGKVTPYYQHYLRH 257
+ C HC+K F + LL H +++ F C CGK RH
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 294 KYQCAM--CKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLH 344
Y C + C ++++ L +HIR H GQ ++C IC ++ +L HIR H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
C + F+ L H++ H +QC +C + ++ L HIR H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
RH+RIH G + +C +C + F+ L H++ H
Sbjct: 39 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYK-CKECGKCYTQNTNLKQHMLSHK 208
F C+ C +T+ S L +H++ H G + + C ECGKC+ + + +H+ H+
Sbjct: 5 FFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 236 SER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHE 290
SER F C+ CGK RH R H G C C K F + + H++ H+
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 297 CAMCKKQYASKKMLEKHIRRHEG-QDYKCYICGNRYATQKYLEEHIRLHQ 345
C C K Y L +H R H G + C CG + Q + H+++HQ
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSERFK-CDLCGKVTPYYQHYLRHMRIHQ 262
F C C K + + L RH + H R + C CGK RH+++HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQG 346
Y+C C+ + K L H H G+ Y+C ICG ++ L+ H R+H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+KCD C +F + L HK H G K Y+C CG + + NLK H H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 265 EVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ 320
+ ++C+ C F K +L H H Y+C +C Q+ L+ H R H G+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEP 292
+KCD C Y + H +H G + + CN+C F +L+ H + H E+P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER 238
YKC C + NL H H G + C C F A L H + HS E+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 263 GLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
G EC+ C K F L H++ H Y+C C+ A K L H+ RH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 235 SSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
SS R +C CGK + H+R H G + ++C C A K SL+ H++RH
Sbjct: 2 SSSR-ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 158 KCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
+C C + F S YL H + H G K YKC+ C Q T+L+ H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 296 QCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLH 344
+C+ C K + S L H+R H G+ YKC C A + L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQK 233
+ C+ C + + + +LK+H SH + C CN+ FT R LL+RH QK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 269 CNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRR-HEG 319
C +C + FA + L+ H + H Y C +C + + + +L +H ++ H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
F C++C + +H RH R H + + C LC + F + L H Q+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHM-RIHQG 263
F+C C + F + L RH + H++E+ + C LC + +RH +IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYATQKYLEEHI-RLHQG 346
+ C +C + +A ++ L++H R H + Y C +C + + L H ++H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 219 KNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECN--LCA 273
+ F + +LV HM++H+ E+ KC C K ++ H+R H G + + C C+
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 274 KLFACKRSLQDHMQR-HEEPNKYQCAM--CKKQYASKKMLEKHIR 315
K F+ H R H Y C + C K+Y L KH++
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 164 RTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFH--C 217
R F +Q L H + H G K +KC + C K Y++ NLK H+ SH G ++C H C
Sbjct: 47 RPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGC 105
Query: 218 NKNFTHRALLVRHMQK-HSSER-FKCDLCG 245
+K F++ + +H + HS+E+ + C L G
Sbjct: 106 SKAFSNASDRAKHQNRTHSNEKPYVCKLPG 135
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 269 CNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYI 326
C+ + F + L HM+RH E+P+K C+K Y+ + L+ H+R H G+ K Y+
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--KPYM 99
Query: 327 C 327
C
Sbjct: 100 C 100
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKGI 210
YKC ECGK +TQN++L H H G+
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGV 38
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLE 265
+KC+ CGKV H H RIH G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.066, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK +TQN++L +H H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
+KC+ CGKV H RH R+H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTG 37
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYICGNRYA 332
+QC +C + ++ L HIR H G+ + C ICG ++A
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHE 268
F C C +NF+ L H++ H+ E+ F CD+CG+ RH I L + E
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFA 277
F+C +C + H H+R H G + C++C + FA
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQH 203
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRH 50
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 130 FQCNVCFLMLNNRCYTRFHLLKHNWVR-FKCDLCSRTFNSQSYLQQHKKHDH 180
FQC +C + + H+ H + F CD+C R F ++H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+CKECGK ++Q T+L QH H G
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK +TQN++L H H G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
+KC+ CGKV H H RIH G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTG 37
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK +TQN++L +H H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK + Q NL QH H G
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK +TQN++L +H H G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 268 ECNLCAKLFACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEGQ-DYKC 324
EC K F K L +H++ H + C C K +A + L+ H R H G+ +KC
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 325 YI--CGNRYATQKYLEEHIRLH 344
C R+A ++H+ +H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 255 LRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKML 310
+ H+R+H G + C C K+FA +L+ H + H E+P K + C +++A+
Sbjct: 79 VNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR 138
Query: 311 EKHIRRH 317
+KH+ H
Sbjct: 139 KKHMHVH 145
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 23/133 (17%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNF 221
C RTF++ L H +H G + CY + C K+F
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHV--CYWEE----------------CPREGKSF 72
Query: 222 THRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLF 276
+ LV H++ H+ E+ F C CGK+ ++ H R H G + +C C + F
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 277 ACKRSLQDHMQRH 289
A + HM H
Sbjct: 133 ANSSDRKKHMHVH 145
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 296 QCAMCKKQYASKKMLEKHIRRHEGQ-DYKCYI--CGNRYATQKYLEEHIRLHQG 346
+C K + +K L HIR H G+ + C CG +A + L+ H R H G
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 190 CGKCYTQNTNLKQHMLSHKG-IFFIC--FHCNKNFTHRALLVRHMQKHSSER 238
CGK + ++ NLK H +H G F C C++ F + + +HM H+S++
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KCKECGK + QN +L H+ H G
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTG 37
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 184 KYKCKECGKCYTQNTNLKQHMLSHKG 209
+YKC ECGK +++N+ L QH H G
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTG 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK +TQN++L +H H G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
+KC+ CGKV H +RH IH G
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 159 CDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKE--CGKCYTQNTNLKQHMLSH 207
CD C R F+++ YL HKK+ H K + C E CGK + +LK+HM H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 235 SSERFKCDL--CGKVTP---YYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
S CD CG++ Y H+ ++ IHQ C K F K+ L++HM+ H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 290 EEPNKYQC 297
+ Y C
Sbjct: 64 SDTRDYIC 71
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 189 ECGKCYTQNTNLKQHMLSHKG-IFFICFH--CNKNFTHRALLVRHMQKHSSER-FKCDLC 244
+CG Y +N L+ H+ H G F C C K FT L RH H+ E+ F CD
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 245 G 245
G
Sbjct: 70 G 70
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + +N++L +H L H G
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
FIC C K FTH+ L+ H + H+ ER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 28.9 bits (63), Expect = 5.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+ C ECGK +T TNL H H G
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTG 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 265 EVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKC 324
E H C +C + FA K + + H++ + C C + S L +HI KC
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN-------KC 79
Query: 325 YICGNR 330
+ NR
Sbjct: 80 HPSENR 85
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 187 CKECGKCYTQNTNLKQHM-LSHKGIFFICFHCNKNFTHRALLVRHMQK-HSSE 237
C CG+ + ++H+ L H F C +C F L RH+ K H SE
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
Score = 28.1 bits (61), Expect = 8.3, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 159 CDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHM 204
C +C +F S+ ++H + H + CK C + + L +H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.65, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC ECGK ++ + +L +H L H G
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC+ECGK +TQN+ L H H G
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTG 37
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 186 KCKECGKCYTQNTNLKQHMLSHKG 209
KC+ECGK +T + NLK+H+ H G
Sbjct: 4 KCRECGKQFTTSGNLKRHLRIHSG 27
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + +NL H + H G
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK + +N+ L H +H G
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK ++Q + L +H H G
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTG 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.75, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + ++NL H + H G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTG 37
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 184 KYKCKECGKCYTQNTNLKQHMLSHKGI-FFICFHCNKNFTHRALLVRHMQ 232
KY C+ECG + + LK+H+ +H + + C +CN +F + L +HM+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 294 KYQCAMCKKQYASKKMLEKHIRRH-EGQDYKCYICGNRYATQKYLEEHIR 342
KY C C + ML+KHIR H + + Y C C + T+ L +H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+CKECGK ++Q +L H H G
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 8 NVMTRRVSERIKKER--ESFLIQVEEYSASDTDSDLDDKIFLSPTRKPKCSVKIKKEDTD 65
NV++ V +R KER L + + D+ DK+ P K +
Sbjct: 315 NVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIP----------KSRYSS 364
Query: 66 VDIFFRSRRQYNNTYNDNLVQIS 88
VD+F + +N TYND V I+
Sbjct: 365 VDLFLGGSKFFNRTYNDTNVPIN 387
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 8 NVMTRRVSERIKKER--ESFLIQVEEYSASDTDSDLDDKIFLSPTRKPKCSVKIKKEDTD 65
NV++ V +R KER L + + D+ DK+ P K +
Sbjct: 315 NVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIP----------KSRYSS 364
Query: 66 VDIFFRSRRQYNNTYNDNLVQIS 88
VD+F + +N TYND V I+
Sbjct: 365 VDLFLGGSKFFNRTYNDTNVPIN 387
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 190 CGKCYTQNTNLKQHMLSH-KGIFFICFH--CNKNFTHRALLVRHMQKHSSERFKC---DL 243
CGK + ++ LK H SH + + + C H C+K F+ + L RH + H+ + C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 244 CGKVTPYYQHYLRHM 258
C V + YL+H+
Sbjct: 67 CSFVGKTWTLYLKHV 81
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 182 GVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
GVK Y C ECGK + + L HM +H G
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTG 35
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 190 CGKCYTQNTNLKQHMLSH-KGIFFICFH--CNKNFTHRALLVRHMQKHSSERFKC---DL 243
CGK + ++ LK H SH + + + C H C+K F+ + L RH + H+ + C D
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCKKDDS 66
Query: 244 CGKVTPYYQHYLRHM 258
C V + YL+H+
Sbjct: 67 CSFVGKTWTLYLKHV 81
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC ECGK Y Q +L QH H G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTG 37
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK ++Q + L +H H G
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTG 37
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK +T +NL H H G
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTG 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
++C+ECGK +TQN++L H H G
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTG 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C+ECGK +TQ++ L H H G
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 259 RIHQGLEVHECNLCAKLFACKRSLQDH-MQRH-EEPNKYQCAMCKKQYASKKMLEKHIRR 316
R H G + +EC +C F +++ H +Q+H E K+ C C A K L H+R+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 320 QDYKCYICGNRYATQKYLEEHIRLHQG 346
+ Y C ICG R+ + L+ H+R+H G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC +CGK +T+ + L H SH G
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+CK C K +TQ +L QH +H G
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + ++L H +H G
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSG 37
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 130 FQCNVCFLMLNNRCYTRFHLLKHN----WVRFKCDLCSRTFNSQSYLQQHKKHDH 180
QC +C + +H KH +RF C+ C + F + H+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 320 QDYKCYICGNRYATQKYLEEHIRLHQG 346
+ Y C +CG R++ + +E H R+H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C ECGK ++Q + L H +H G
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK + Q + L H H+G
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRG 37
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C ECGK ++ + L HM +H G
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ 320
E+P Y C+ C K ++SK L H+R H G+
Sbjct: 10 EKP--YGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER 238
C C K F+ ++ L+ HM+ HS E+
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
+IC C K FT R+ L++H + H+ E+
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSH 207
Y+C ECGK ++ + L QH ++H
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITH 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 185 YKCKECGKCYTQNTNLKQH 203
Y+C ECGK + QNT+L +H
Sbjct: 13 YECIECGKAFIQNTSLIRH 31
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKGI 210
Y C ECGK +T K ++ HKG+
Sbjct: 11 YSCNECGKAFT----FKSQLIVHKGV 32
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + ++T+L +H H G
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTG 37
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK 184
FKC+ C +TF+ YL QH++ GVK
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIHTRGVK 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
YKC +CG ++ +L+ H R+H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
+KCD+CGK H H R+H G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC+ CG + Q +L+ H+L H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTG 36
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
YKC CG R+ +L H+ +H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C ECGK + + L H +H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAG 35
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 293 NKYQCAMCKKQYASKKMLEKHIRRHEGQ 320
N Y+C+ C K + K L H R H G+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC ECGK + Q+ +L QH H G
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTG 37
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + N++ QH H G
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTG 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C +CGK ++Q +L H+ H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ 320
Y C C++Q+A L++H+R H G+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
++C HC + F L RH++ H+ E+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC ECGK + N+ L +H H G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTG 37
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C+ECGK + Q +L H H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 212 FICFHCNKNFTHRALLVRHMQK 233
+ C CN+ FT R LL+RH QK
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQK 24
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
YKC++CGK Y + NL H H G
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
++C +C K F A LVRH + H+ E+
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 27.7 bits (60), Expect = 9.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ CD CGK +RH RIH G
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTG 37
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC+EC C++Q ++L+ H H G
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVG 37
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 7.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C ECGK ++ ++L H + H G
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTG 37
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C+ECGK + ++ L++H H G
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTG 37
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
+IC C K FT R+ L++H + H+ ++
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,033,855
Number of Sequences: 62578
Number of extensions: 460267
Number of successful extensions: 2722
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 793
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)