RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6525
(360 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 106 bits (267), Expect = 1e-27
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
Query: 165 TFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFT 222
+ S G K Y C ECGK ++++ +L +H +H G + C C K+F+
Sbjct: 2 SEFGSSSSVAQAAL-EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFS 60
Query: 223 HRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRS 281
+ L RH + H+ E+ +KC CGK + H R H G + + C C K F+
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAH 120
Query: 282 LQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLE 338
L+ H + H E+P Y+C C K ++ + L H R H G+ YKC CG ++ + L
Sbjct: 121 LRAHQRTHTGEKP--YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178
Query: 339 EHIRLHQG 346
H R H G
Sbjct: 179 VHQRTHTG 186
Score = 104 bits (263), Expect = 5e-27
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFIC 214
+ C C ++F+ +L +H++ H G K YKC ECGK ++ +L +H +H G + C
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 215 FHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCA 273
C K+F+ RA L H + H+ E+ + C CGK H H R H G + ++C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 274 KLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEG 319
K F+ + +L H + H E+P Y+C C K ++ + L H R H G
Sbjct: 141 KSFSREDNLHTHQRTHTGEKP--YKCPECGKSFSRRDALNVHQRTHTG 186
Score = 62.1 bits (152), Expect = 1e-11
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FIC 214
+ C C ++F+ ++L+ H++ H G K YKC ECGK +++ NL H +H G + C
Sbjct: 106 YACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 215 FHCNKNFTHRALLVRHMQKHSSER 238
C K+F+ R L H + H+ ++
Sbjct: 165 PECGKSFSRRDALNVHQRTHTGKK 188
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 90.0 bits (224), Expect = 1e-21
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 156 RFKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKE--CGKCYTQNTNLKQHMLSHKG- 209
R+ C C +N LQ H H G K + CKE C K +T +L +H L+H G
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 210 IFFIC--FHCNKNFTHRALLVRHMQKHSSER---FKCDL--CGKVTPYYQHYLRHMRIHQ 262
F C C+ FT +A + +H + + + + C CGK + H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 263 GLEVHECN--LCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRR 316
+EC C K F+ L+ H + H + C + + KH+
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 84.2 bits (209), Expect = 1e-19
Identities = 51/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 180 HEGVK-YKCK--ECGKCYTQNTNLKQHMLSHKG-IFFIC--FHCNKNFTHRALLVRHMQK 233
K Y C +CG Y +N L+ H+ H G F C C K FT L RH
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Query: 234 HSSER-FKCD--LCGKVTPYYQHYLRHMRIHQG--LEVHECNL--CAKLFACKRSLQDHM 286
H+ E+ F CD C + +H + V+ C+ C K F L+ H
Sbjct: 67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 287 QRH--EEPNKYQC--AMCKKQYASKKMLEKHIRRHEGQD-YKCYIC---GNRYATQKYLE 338
H + P Y+C C K+++ L++H + H G K C G + YL+
Sbjct: 127 FSHTQQLP--YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL--YLK 182
Query: 339 EHIRLHQ 345
HQ
Sbjct: 183 HVAECHQ 189
Score = 48.7 bits (117), Expect = 4e-07
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 257 HMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRH--EEPNKYQC--AMCKKQYASKKML 310
+ + + C+ C + LQ H+ +H E+P + C C+K + S L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP--FPCKEEGCEKGFTSLHHL 60
Query: 311 EKHIRRHEGQD-YKC--YICGNRYATQKYLEEHIRLHQG---HTYMCNAK 354
+H H G+ + C C R+ T+ +++H Y+C+ +
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE 110
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 81.1 bits (201), Expect = 1e-18
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 37/176 (21%)
Query: 157 FKCDLCSRTFNSQSYLQQH--KKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIFFI 213
+ D CS+ F+SQ L H +H H K + C G
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------- 41
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECN 270
C + F + +LV HM++H+ E+ KC C K ++ H+R H G + + C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 271 --LCAKLFACKRSLQDHMQR-H--EEPNKYQCAM--CKKQYASKKMLEKHIRRHEG 319
C+K F+ H R H E+P Y C + C K+Y L KH++ G
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKP--YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 42.6 bits (101), Expect = 4e-05
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 268 ECNLCAKLFACKRSLQDHMQRH-----EEPNKYQC-----AMCKKQYASKKMLEKHIRRH 317
+ C++ F + L H+ + + C + + + ++ ML H+RRH
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKE--FVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 318 EGQD-YKCYI--CGNRYATQKYLEEHIRLHQG 346
G+ +KC C Y+ + L+ H+R H G
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Score = 26.8 bits (60), Expect = 7.0
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQGHT----YMCN 352
+ C + +Q+ L HI H ++C+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCH 38
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 76.4 bits (189), Expect = 2e-17
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 157 FKCDL--CSRTFNSQSYLQQHKK-HDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IF 211
C C++ F S +++H H G + + C ECGK + +++ LK+H L H G
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH---GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 212 FICFH--CNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQG 263
F C C K F+ L H++ H+ +R + C C K + H+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 58.3 bits (142), Expect = 7e-11
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 239 FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNK 294
C C K+ +H+ H G VH C C K F L+ H H E+P
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-- 62
Query: 295 YQCAM--CKKQYASKKMLEKHIRRHEGQD-YKCYI--CGNRYATQKYLEEHIRLHQG 346
+QC C K+++ L H+R H G Y C C ++A L+ HI H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 57.9 bits (141), Expect = 8e-11
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKGIF-F 212
C C + F S L++H+ H G K ++C + CGK ++ + NL+ H+ H G +
Sbjct: 35 HVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 213 ICFH--CNKNFTHRALLVRHMQKHSSER 238
+C CNK F L H+ H+ +
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 75.4 bits (186), Expect = 1e-16
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 19/153 (12%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKG----------IF 211
+ K D + K C + ++ L H+ +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHE 268
C K+F + LV H++ H+ E+ F C CGK+ ++ H R H G + +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 269 CNL--CAKLFACKRSLQDHMQRH--EEPNKYQC 297
C C + FA + HM H ++
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKS--GPS 153
Score = 68.9 bits (169), Expect = 2e-14
Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 20/143 (13%)
Query: 148 HLLKHNWV-----RFKCDLCSRTFNSQSYLQQHK---------KHDHEGVKYKCKECGKC 193
L W+ C RTF++ L H +++H +C GK
Sbjct: 12 QELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKS 71
Query: 194 YTQNTNLKQHMLSHKG-IFFICFH--CNKNFTHRALLVRHMQKHSSER-FKCDL--CGKV 247
+ L H+ H G F C C K F L H + H+ E+ FKC+ C +
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 248 TPYYQHYLRHMRIHQGLEVHECN 270
+HM +H + +
Sbjct: 132 FANSSDRKKHMHVHTSDKSGPSS 154
Score = 68.5 bits (168), Expect = 4e-14
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 25/172 (14%)
Query: 189 ECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKV 247
G + C++ F+ LV H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGG--------- 52
Query: 248 TPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYA 305
P +++ + EC K F K L +H++ H E+P C K +A
Sbjct: 53 -PEQNNHVCY--------WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFA 103
Query: 306 SKKMLEKHIRRHEGQD-YKCYI--CGNRYATQKYLEEHIRLHQGH-TYMCNA 353
+ L+ H R H G+ +KC C R+A ++H+ +H + +
Sbjct: 104 RSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG 155
Score = 36.9 bits (86), Expect = 0.003
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 13/87 (14%)
Query: 273 AKLFACKRSLQDHMQ---RHEEPNKYQCAMCKKQYASKKMLEKHIRRHEG---------- 319
+ + ++ + E C + +++ L H+
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 320 QDYKCYICGNRYATQKYLEEHIRLHQG 346
+C G + + L HIR+H G
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTG 87
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 74.5 bits (184), Expect = 1e-16
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 30/141 (21%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSE 237
G +C C K + LK H H G F C C K + + L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE------ 55
Query: 238 RFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKY 295
+++ +V C++C + F + L+ HM H E P Y
Sbjct: 56 ------------------ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP--Y 95
Query: 296 QCAMCKKQYASKKMLEKHIRR 316
+C+ C +Q+ KK L+ H+ +
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIK 116
Score = 66.0 bits (162), Expect = 1e-13
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHD--HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-F 212
F+C C + + + L +H+ + + + + C C + + + L+ HM+SH G +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 213 ICFHCNKNFTHRALLVRHMQK-HSSER 238
C C++ F + L HM K HS
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 45.2 bits (108), Expect = 3e-06
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 268 ECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRR---HEGQD- 321
EC C K F K L+ H ++H E+P ++C C K Y K+ L +H R + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKP--FECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
+ C +C + + L H+ H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTG 91
Score = 34.8 bits (81), Expect = 0.009
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT----Y 349
+C C K++ SK L+ H R+H G+ ++C CG Y ++ L EH + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 350 MCN 352
C+
Sbjct: 68 TCS 70
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 74.1 bits (183), Expect = 2e-16
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 185 YKCKE--CGKCYTQNTNLKQHMLSHKGIF-FIC--FHCNKNFTHRALLVRHMQKHSSER- 238
+ C C K Y + ++L+ H H G + C C + F+ L RH ++H+ +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRH 289
F+C C + H H R H G + C C K FA L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 74.1 bits (183), Expect = 2e-16
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 157 FKCD--LCSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKGIF 211
F C C++ + S+LQ H + H G K Y+C K+C + ++++ LK+H H G+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 212 -FICFHCNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIH 261
F C C + F+ L H + H+ E+ F C C K +RH +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 44.8 bits (107), Expect = 3e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 267 HECN--LCAKLFACKRSLQDHMQRH--EEPNKYQCAM--CKKQYASKKMLEKHIRRHEGQ 320
C C K + LQ H ++H E+P YQC C+++++ L++H RRH G
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP--YQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 321 D-YKCYICGNRYATQKYLEEHIRLHQG 346
++C C +++ +L+ H R H G
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTG 91
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 69.4 bits (171), Expect = 6e-15
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSE 237
G K Y C +CGK +T + +HM H G+ + C C K F + LV HM+ H+
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 238 R-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSL 282
+ ++C++C K + H + + +E +
Sbjct: 64 KPYECNICAKR--FMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 66.3 bits (163), Expect = 6e-14
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FIC 214
+ C C ++F +S +H H G++ Y C CGK + +L HM H GI + C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 215 FHCNKNFTHRALLVRHMQKHSSER-FKCDLCGK 246
C K F R RH+ S + ++ +
Sbjct: 69 NICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQ 99
Score = 53.6 bits (130), Expect = 2e-09
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--E 290
S ++ + C CGK + RHM +H GL + C +C K F K L HM+ H
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 291 EPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICG 328
+P Y+C +C K++ + +H+ Y+
Sbjct: 64 KP--YECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAE 98
Score = 44.0 bits (105), Expect = 4e-06
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNL 200
++C++C++ F + +H K Y+ + + T+ +
Sbjct: 66 YECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGP 107
Score = 43.6 bits (104), Expect = 7e-06
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 258 MRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIR 315
G +++ C C K F K HM H P Y C +C K++ K L H++
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP--YGCGVCGKKFKMKHHLVGHMK 58
Query: 316 RHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT----YMCN 352
H G Y+C IC R+ + H+ + Y
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV-----TSCTKSYEAA 95
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 68.7 bits (169), Expect = 6e-15
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF---F 212
C++C + F +L +HK H G K Y C CG + + + H+ SH G +
Sbjct: 8 VACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 213 ICFHCNKNFTHRALLVRHMQK-HSSER 238
IC C K F+ L H+++ HS
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.1 bits (165), Expect = 2e-14
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 27/111 (24%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSE 237
G C+ CGK + +L +H LSH G + C C F + + H++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 238 RFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
K PY C C K F+ L H+++
Sbjct: 62 VGK--------PY-----------------ICQSCGKGFSRPDHLNGHIKQ 87
Score = 42.9 bits (102), Expect = 8e-06
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 267 HECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYK- 323
C +C K+F L H H E+P Y C +C ++ K + H+R H+G K
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKP--YSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 324 --CYICGNRYATQKYLEEHI-RLHQG 346
C CG ++ +L HI ++H G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 65.6 bits (161), Expect = 8e-14
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 157 FKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-F 212
+ C + C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H G F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 213 ICFHCNKNFTHRALLVRHMQKHSSER 238
C C + F RH + H ++
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.4 bits (158), Expect = 2e-13
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSER-FK 240
Y C + C + ++Q+ +L +H+ H G F C C +NF+ L H++ H+ E+ F
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 241 CDLCGKVTPYYQHYLRHMRIHQG 263
CD+CG+ RH +IH
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 56.7 bits (138), Expect = 1e-10
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 216 HCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAK 274
C++ F+ L RH++ H+ ++ F+C +C + H H+R H G + C++C +
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 275 LFACKRSLQDHMQRH 289
FA + H + H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 50.2 bits (121), Expect = 2e-08
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 239 FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNK 294
+ C + C + RH+RIH G + +C +C + F+ L H++ H E+P
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-- 62
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ 320
+ C +C +++A ++H + H Q
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQ 88
Score = 45.1 bits (108), Expect = 1e-06
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 272 CAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICG 328
C + F+ SL H++ H ++P +QC +C + ++ L HIR H G+ + C ICG
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKP--FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 329 NRYATQKYLEEHIRLHQG 346
++A + H ++H
Sbjct: 70 RKFARSDERKRHTKIHLR 87
Score = 34.0 bits (79), Expect = 0.010
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 295 YQCAM--CKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
Y C + C ++++ L +HIR H GQ ++C IC ++ +L HIR H G
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 64.4 bits (158), Expect = 2e-13
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIFFICF 215
F+C +C R F+ +L H + H G K + C CG+ + ++ K+H + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
Query: 216 HCNKNFTHRALLVRHMQ 232
+ + L +
Sbjct: 63 KVEELLSKNYHLENEVA 79
Score = 49.8 bits (120), Expect = 3e-08
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH-EEPNKYQC 297
F+C +C + H H+R H G + C++C + FA + H P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP--ILE 61
Query: 298 AMCKKQYASK---KMLEKHIRRHEG 319
++ + + +++ G
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVG 86
Score = 48.3 bits (116), Expect = 9e-08
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 267 HECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKC 324
+C +C + F+ L H++ H E+P + C +C +++A ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKP--FACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 325 YICGNRYATQKYLEEHIRLHQGHT 348
+ +LE + +
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLV 85
Score = 35.5 bits (83), Expect = 0.003
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHTYMCN 352
+QC +C + ++ L HIR H G+ + C ICG ++A + H + + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 62.6 bits (153), Expect = 4e-13
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK-HDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGI 210
++C +CSR + S +H VK Y C C K +T+ N+ H+ I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 52.6 bits (127), Expect = 2e-09
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLS--HKGIF-FICFHCNKNFTHRALLVRHMQKH 234
EG Y+CK C + YT +N +H ++ + + + C C K FT + + H++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 212 FICFHCNKNFTHRALLVRHM--QKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGL 264
+ C C++ +TH + RH + + + C C K + H++I +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 42.2 bits (100), Expect = 9e-06
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 259 RIHQGLEVHECNLCAKLFACKRSLQDHM--QRHEEPNKYQCAMCKKQYASKKMLEKHIRR 316
+G + C +C++++ + H Y C C K++ K + H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 317 HEG 319
Sbjct: 63 IHK 65
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRI--HQGLEVHECNLCAKLFACKRSLQDHMQRH 289
E ++C +C +V + ++ RH + ++V+ C C K F K ++ H++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 286 MQR-HEEPNKYQCAMCKKQYASKKMLEKHIR--RHEGQD-YKCYICGNRYATQKYLEEHI 341
M+ E + Y+C +C + Y +H Y C C + + + H+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 342 RLHQG 346
++
Sbjct: 61 KIIHK 65
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 60.9 bits (149), Expect = 4e-12
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLC 272
C C K F+ + L HM+ H+ + +KC C +H+RIH +C +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 273 AKLFACKRSLQDHMQRH--EEPNKYQCA 298
L H++ H +
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSG--PSSG 96
Score = 56.3 bits (137), Expect = 2e-10
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+KC C S L +H + H + +KC+ C ++ L H+ SH G
Sbjct: 37 YKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 52.0 bits (126), Expect = 6e-09
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 267 HECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YK 323
H+C +C K F+ K L+ HM+ H +P Y+C C A L KH+R H + +K
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKP--YKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 324 CYICGNRYATQKYLEEHIRLHQG 346
C IC L H+R H G
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTG 89
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 60.9 bits (149), Expect = 5e-12
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 34/132 (25%)
Query: 170 SYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLV 228
S + + K + CK CG+ +FT L+
Sbjct: 3 SGSSGGRLP-SKTKKEFICKFCGR---------------------------HFTKSYNLL 34
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQ 287
H + H+ ER + CD+C K H H IH + +C C K F R+L H
Sbjct: 35 IHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 288 RH--EEPNKYQC 297
H
Sbjct: 95 LHMQTSS--PTA 104
Score = 55.9 bits (136), Expect = 3e-10
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 227 LVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDH 285
+++ F C CG+ + L H R H + C++C K F + L+DH
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 286 MQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKC 324
H E+P ++C C K + + L H H
Sbjct: 65 RYIHSKEKP--FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 54.7 bits (133), Expect = 7e-10
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+ CD+C + F Q +L+ H+ H K +KC+ECGK + Q+ L H H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 32.8 bits (76), Expect = 0.037
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 31/93 (33%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKH 313
+ + C C + F +L H + H E P
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP--------------------- 45
Query: 314 IRRHEGQDYKCYICGNRYATQKYLEEHIRLHQG 346
Y C IC + Q +L +H +H
Sbjct: 46 --------YTCDICHKAFRRQDHLRDHRYIHSK 70
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 58.3 bits (142), Expect = 2e-11
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 172 LQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF---FICFHCNKNFTHRALL 227
+ H G K Y+C C +TQ+ +K H+L F C HC+ ++ L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 228 VRHMQK-HSSER 238
H++K HS
Sbjct: 62 GVHLRKQHSYSG 73
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 199 NLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSER---FKCDLCGKVTPYYQHY 254
+ +H G + C+ C+ FT + H+ + +E F C C V
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 255 LRHMR-IHQG 263
H+R H
Sbjct: 62 GVHLRKQHSY 71
Score = 43.7 bits (104), Expect = 3e-06
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 281 SLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD---YKCYICGNRYATQK 335
S + H E+P Y+C +C ++ ++ HI + ++ + C C A +
Sbjct: 2 SSGSSGRTHSGEKP--YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 336 YLEEHIRLHQGHTY 349
L H+R H+Y
Sbjct: 60 DLGVHLRKQ--HSY 71
Score = 31.0 bits (71), Expect = 0.10
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 130 FQCNVCFLMLNNRCYTRFHLLKH---NWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVK 184
++C +C + H+L+ N +F C C +S L H + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 57.4 bits (139), Expect = 4e-11
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKGIF----FICFHCNKNFTHRALLVRHMQKHSSE 237
+C+ CG Q +L H H F C C K F + H K
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Score = 50.9 bits (122), Expect = 9e-09
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER----FKCDLCGKVTPYYQHYLRHMRIHQGLEVH 267
C C +A L H +KH+ F C+ CGK H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 268 ECNLCAK 274
+
Sbjct: 68 APQESSG 74
Score = 48.2 bits (115), Expect = 8e-08
Identities = 13/73 (17%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRIH---QGLEVHECNLCAKLFACKRSLQDHMQRH 289
S +C++CG H R H C C K F S+ H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 290 EEPNKYQCAMCKK 302
Sbjct: 62 HPALLLAPQESSG 74
Score = 45.1 bits (107), Expect = 1e-06
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 267 HECNLCAKLFACKRSLQDHMQRHEEPNK---YQCAMCKKQYASKKMLEKHIRRH 317
+C +C K SL H ++H E + C C K++ + H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 43.9 bits (104), Expect = 3e-06
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD----YKCYICGNRYATQKYLEEHIRLH 344
QC +C K L H R+H + C CG R+ + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 42.8 bits (101), Expect = 7e-06
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 130 FQCNVCFLMLNNRCYTRFHLLKHNWVR----FKCDLCSRTFNSQSYLQQHKKHDHEGVKY 185
QC +C + +H KH F C+ C + F + H+ H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 186 KCKECGK 192
+E
Sbjct: 68 APQESSG 74
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 57.2 bits (139), Expect = 5e-11
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 157 FKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKE--CGKCYTQNTNLKQHMLSHKGIF 211
CD C R F+++ YL HKK+ H K + C E CGK + +LK+HM H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 212 -FICFHCNKNF 221
+IC +
Sbjct: 68 DYICEFSGPSS 78
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 212 FICFH--CNKNFTHRALLVRHM-QKHSSER-FKCD--LCGKVTPYYQHYLRHMRIHQGLE 265
C C + F++R L H +H ++ F C CGK + +H HM++H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 266 VHECNLCAKLF 276
+ C
Sbjct: 68 DYICEFSGPSS 78
Score = 39.8 bits (94), Expect = 6e-05
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 234 HSSER-FKCDL--CGKVTPYYQHYLRHMRI-HQGLEVHECN--LCAKLFACKRSLQDHMQ 287
S CD CG++ Q+ H + H + C C K F K+ L++HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 288 RH--EEPNKYQCAMCKK 302
H Y C
Sbjct: 62 LHSDTRD--YICEFSGP 76
Score = 31.4 bits (72), Expect = 0.064
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 289 HEEPNKYQCAMCKKQYASKKMLEKHIR-RHEGQD-YKC--YICGNRYATQKYLEEHIRLH 344
C + +++++ L H + +H Q + C CG + +K+L+EH++LH
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 345 QG 346
Sbjct: 64 SD 65
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 56.3 bits (137), Expect = 9e-11
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+KCD C +F + L HK H G K Y+C CG + + NLK H H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 55.2 bits (134), Expect = 3e-10
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 170 SYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALL 227
+ H K YKC C + NL H H G + C C F A L
Sbjct: 3 HHHHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 228 VRHMQKHSSER 238
H + HS E+
Sbjct: 62 KTHTRIHSGEK 72
Score = 47.1 bits (113), Expect = 2e-07
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 227 LVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDH 285
H S++ +KCD C Y + H +H G + + CN+C F +L+ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 286 MQRH 289
+ H
Sbjct: 65 TRIH 68
Score = 44.8 bits (107), Expect = 1e-06
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 253 HYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKML 310
H+ H + + ++C+ C F K +L H H E+P Y+C +C Q+ L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP--YRCNICGAQFNRPANL 61
Query: 311 EKHIRRHEG 319
+ H R H G
Sbjct: 62 KTHTRIHSG 70
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 55.6 bits (135), Expect = 2e-10
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
KC CS + +S++ L+ H++ H + +KC C Q +NL +HM G
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 54.0 bits (131), Expect = 6e-10
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSE 237
KC EC + L+ H H F C +C+ + + L +HM+K +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 51.0 bits (123), Expect = 6e-09
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 233 KHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
SS KC C H RIH +CN C+ +L HM++
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
+C+ C +SK L H R H +KC C L +H++ G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 27.5 bits (62), Expect = 1.4
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 315 RRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCN 352
KC C +++ L H R+H + CN
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCN 41
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 56.0 bits (136), Expect = 2e-10
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 199 NLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSER-----FKCDLCGKVTPYYQ 252
+ +H G + C HC+K F + LL H +++ F C CGK
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 253 HYLRHMRIHQGLEVHECNLCAKLF 276
RH G + E
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 52.9 bits (128), Expect = 2e-09
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 253 HYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNK----YQCAMCKKQYASKK 308
R H G + + C+ C K F K+ L H +R+ +PN + C+ C K + +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 309 MLEKHIRRHEGQD-YKCYICG 328
+ +H G D + G
Sbjct: 62 TMARHADNCAGPDGVEGENSG 82
Score = 51.4 bits (124), Expect = 6e-09
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK-HDHEGVK---YKCKECGKCYTQNTNLKQHMLSHKGIF- 211
+ C C +TF + L H K + + C +CGK +T+ + +H + G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 212 FICFHCNKNF 221
+ +
Sbjct: 76 VEGENSGPSS 85
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 227 LVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEV----HECNLCAKLFACKRS 281
+ H+ E+ + C C K Q H + + C+ C K F + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 282 LQDHMQRHEEPNKYQCAMCKK 302
+ H P+ +
Sbjct: 63 MARHADNCAGPDGVEGENSGP 83
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 55.5 bits (135), Expect = 2e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLC 272
C C K+F + L H+ HS R + C CGK +H IH G + H+C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 273 AKLFACKRSLQDHMQRH 289
K F+ +L H ++H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 52.8 bits (128), Expect = 2e-09
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+ C C + F+ +S +++H H G K +KC+ CGK ++Q++NL H H G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 48.2 bits (116), Expect = 9e-08
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQ 296
F C +CGK H+ IH + C C K F K ++ H H E+P ++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP--HK 59
Query: 297 CAMCKKQYASKKMLEKHIRRHEG 319
C +C K ++ L H R+H G
Sbjct: 60 CQVCGKAFSQSSNLITHSRKHTG 82
Score = 40.9 bits (97), Expect = 3e-05
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 268 ECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKC 324
+C +C K F +L H+ H P Y C C K++ K ++KH H G+ +KC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRP--YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 325 YICGNRYATQKYLEEHIRLHQG 346
+CG ++ L H R H G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
Score = 29.7 bits (68), Expect = 0.29
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
+ C +C K + L H+ H Y C CG R+ + +++H +H G
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 54
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 54.4 bits (132), Expect = 3e-10
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQK-HSSE 237
+ C+ C + + + +LK+H SH + C CN+ FT R LL+RH QK HS
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
F C++C + +H RH R H + + C LC + F + L H Q+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 40.5 bits (96), Expect = 3e-05
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHM-RIHQG 263
F+C C + F + L RH + H++E+ + C LC + +RH +IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.7 bits (73), Expect = 0.036
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 267 HECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKHIRR 316
C +C + FA + L+ H + H E+P Y C +C + + + +L +H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP--YPCGLCNRAFTRRDLLIRHAQK 52
Score = 30.5 bits (70), Expect = 0.090
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHI-RLHQGHT 348
+ C +C + +A ++ L++H R H + Y C +C + + L H ++H G+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 27.8 bits (63), Expect = 0.82
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 130 FQCNVCFLMLNNRCYTRF-HLLKHNWVR-------FKCDLCSRTFNSQSYLQQHKKHDHE 181
F C VC R + R HL +H R + C LC+R F + L +H + H
Sbjct: 3 FVCEVC-----TRAFARQEHLKRHY--RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Query: 182 G 182
G
Sbjct: 56 G 56
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 54.5 bits (132), Expect = 7e-10
Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 31/114 (27%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FIC--FHCNKNFTHRALLVRHMQKHS 235
CGK YT++++LK H+ +H G + C C F L RH +KH+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 236 SERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
R P+ +C C + F+ L HM+RH
Sbjct: 62 GHR----------PF-----------------QCQKCDRAFSRSDHLALHMKRH 88
Score = 49.8 bits (120), Expect = 3e-08
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 233 KHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQDHMQRH 289
K ++ CGK H H+R H G + + C+ C FA L H ++H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 290 EEPNKYQCAMCKKQYASKKMLEKHIRRH 317
+QC C + ++ L H++RH
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 49.1 bits (118), Expect = 5e-08
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCK--ECGKCYTQNTNLKQHMLSHKGIF- 211
C +T+ S+L+ H + H G K Y C CG + ++ L +H H G
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 212 FICFHCNKNFTHRALLVRHMQKH 234
F C C++ F+ L HM++H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 42.9 bits (102), Expect = 7e-06
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 261 HQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAM--CKKQYASKKMLEKHIRR 316
+ C K + L+ H++ H E+P Y C C ++A L +H R+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP--YHCDWDGCGWKFARSDELTRHYRK 59
Query: 317 HEGQ-DYKCYICGNRYATQKYLEEHIRLH 344
H G ++C C ++ +L H++ H
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 34.0 bits (79), Expect = 0.011
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 288 RHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYI--CGNRYATQKYLEEHIRLH 344
+ + A C K Y L+ H+R H G+ Y C CG ++A L H R H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 345 QGHT----YMCNAKFS 356
GH C+ FS
Sbjct: 61 TGHRPFQCQKCDRAFS 76
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 54.2 bits (131), Expect = 7e-10
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 185 YKC--KECGKCYTQNTNLKQHMLSHKGIF-FICFH--CNKNFTHRALLVRHMQKHSSER- 238
Y C + CGK + ++ LK H SH + C H C+K F+ + L RH + H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 239 FKCDLCGKVTPYYQHYLRHM-RIH 261
K D C V + YL+H+ H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 48.4 bits (116), Expect = 9e-08
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 157 FKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKE--CGKCYTQNTNLKQHMLSHKGIF 211
+ C C + F + L+ H+ H Y+C C K ++ + LK+H H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 212 -FICFHCNKNFTHRALLVRHMQK 233
C+ L ++H+ +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 45.7 bits (109), Expect = 8e-07
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 239 FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECN--LCAKLFACKRSLQDHMQRHEEPNK 294
+ C CGK + H H +EC C K F+ L+ H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 295 YQCAMCKKQYASKKMLEKHIRR 316
+ C + + KH+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAE 83
Score = 39.5 bits (93), Expect = 1e-04
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 266 VHECNL--CAKLFACKRSLQDHMQRH--EEPNKYQC--AMCKKQYASKKMLEKHIRRHEG 319
++ C+ C K F L+ H H + P Y+C C K+++ L++H + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLP--YECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 320 QD-YKCYICGNRYATQKYLEEHIR 342
K C T +H+
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 295 YQCAM--CKKQYASKKMLEKHIRRHEGQD-YKC--YICGNRYATQKYLEEHIRLHQGHT- 348
Y C C K + L+ H H Q Y+C C R++ L+ H ++H G+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 349 ---YMCNAKFS 356
C+
Sbjct: 62 KKDDSCSFVGK 72
Score = 27.6 bits (62), Expect = 2.0
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDH 180
K D CS + + +H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 54.0 bits (131), Expect = 7e-10
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 148 HLLKHNWV-----RFKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLK 201
+ W R+KCD C ++F+ S L +H++ H G K YKC ECGK + Q ++L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLI 63
Query: 202 QHMLSHKG 209
H H G
Sbjct: 64 GHHRVHTG 71
Score = 49.0 bits (118), Expect = 4e-08
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 170 SYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALL 227
+ + + YKC ECGK ++ +++L +H +H G + C C K F R+ L
Sbjct: 4 GSSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 228 VRHMQKHSSER 238
+ H + H+
Sbjct: 63 IGHHRVHTGSG 73
Score = 45.1 bits (108), Expect = 1e-06
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 223 HRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRS 281
R + R +KCD CGK + +H R H G + ++C+ C K F +
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 282 LQDHMQR 288
L H R
Sbjct: 62 LIGH-HR 67
Score = 39.3 bits (93), Expect = 1e-04
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 253 HYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKML 310
R + ++C+ C K F+ L H + H E+P Y+C C K + + L
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP--YKCDECGKAFIQRSHL 62
Query: 311 EKHIRRHEG 319
H R H G
Sbjct: 63 IGHHRVHTG 71
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 54.4 bits (130), Expect = 1e-09
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 167 NSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRAL 226
+S S + + K++CK+C Y L HM
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG------------------ 43
Query: 227 LVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHM 286
H + + E + P + L +V +C C F + L HM
Sbjct: 44 ---HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Query: 287 QRH 289
+
Sbjct: 101 IKT 103
Score = 51.3 bits (122), Expect = 2e-08
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 23/124 (18%)
Query: 195 TQNTNLKQHMLSHKG-IFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQH 253
+ ++ K + G F C C+ + L HM + R
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN------- 54
Query: 254 YLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKH 313
N KRSL + + + +C C + S + L H
Sbjct: 55 ---------------NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Query: 314 IRRH 317
+ +
Sbjct: 100 MIKT 103
Score = 47.1 bits (111), Expect = 5e-07
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQ-----RHEEPNKYQCAMCKKQYASKKMLE 311
+ I G C C+ + L HM R + + K+ L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQ 345
+ + + Q KC CG+ + + + L H+ +
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 41.7 bits (97), Expect = 4e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEG-----VKYKCKECGKCYTQNTNLKQHMLSHKGI 210
+F+C CS +++ L H + +L +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 211 -FFICFHCNKNFTHRALLVRHMQKHS 235
C +C +F L HM K
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 37.4 bits (86), Expect = 0.001
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 148 HLLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSH 207
H N + + + L + + + KC CG + +L HM+
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKT 103
Query: 208 K 208
K
Sbjct: 104 K 104
Score = 31.7 bits (71), Expect = 0.11
Identities = 9/68 (13%), Positives = 19/68 (27%)
Query: 281 SLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEH 340
S + + +K++C C Y + L H+ + N +
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 341 IRLHQGHT 348
L +
Sbjct: 66 RSLLEMEG 73
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 51.3 bits (124), Expect = 4e-09
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
+ C C + F+ S L QH++ H G K YKC ECGK ++QN+ L H H
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 48.6 bits (117), Expect = 4e-08
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 172 LQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVR 229
H G K Y C ECGK +++++ L QH H G + C C K F+ + L+
Sbjct: 2 SSGSSG-IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 230 HMQKHSSER 238
H + H+S
Sbjct: 61 HQRIHTSGP 69
Score = 43.6 bits (104), Expect = 3e-06
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 227 LVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDH 285
HS E+ + C CGK ++H R+H G + ++C C K F+ L +H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 286 MQR 288
QR
Sbjct: 62 -QR 63
Score = 40.1 bits (95), Expect = 4e-05
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAMCKKQYASKKMLEKH 313
IH G + + C C K F+ L H + H E+P Y+C C K ++ L H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP--YKCLECGKAFSQNSGLINH 61
Query: 314 IRRHEG 319
R H
Sbjct: 62 QRIHTS 67
Score = 25.5 bits (57), Expect = 7.3
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 310 LEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
H G+ Y C CG ++ L +H R+H G Y C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 52.2 bits (126), Expect = 5e-09
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 196 QNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQ 252
+ + H + C K +T + L H++ H+ E+ +KC C
Sbjct: 5 SSGPDLEKRRIHYCDYP---GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 253 HYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHE 290
RH R H G + +C +C + F+ L HM+RH+
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.2 bits (118), Expect = 6e-08
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 221 FTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFAC 278
+ + H + C KV H H+R H G + ++C C FA
Sbjct: 3 SGSSGPDLEKRRIHYCD---YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFAR 59
Query: 279 KRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHE 318
L H ++H +QC +C + ++ L H++RH+
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.4 bits (116), Expect = 1e-07
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 162 CSRTFNSQSYLQQHKKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKGIF-FICFHC 217
C++ + S+L+ H H G K YKC + C + ++ L +H H G F C C
Sbjct: 23 CTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 218 NKNFTHRALLVRHMQKHSS 236
N++F+ L HM++H +
Sbjct: 82 NRSFSRSDHLALHMKRHQN 100
Score = 45.7 bits (109), Expect = 1e-06
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 255 LRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCAM--CKKQYASKKML 310
L RIH + C K++ L+ H++ H E+P Y+C C ++A L
Sbjct: 10 LEKRRIHYC----DYPGCTKVYTKSSHLKAHLRTHTGEKP--YKCTWEGCDWRFARSDEL 63
Query: 311 EKHIRRHEGQ-DYKCYICGNRYATQKYLEEHIRLHQ 345
+H R+H G ++C +C ++ +L H++ HQ
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 31.4 bits (72), Expect = 0.091
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 279 KRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYI--CGNRYATQK 335
+ C K Y L+ H+R H G+ YKC C R+A
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 336 YLEEHIRLHQGHT----YMCNAKFS 356
L H R H G +CN FS
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFS 86
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKK 177
F+C +C+R+F+ +L H K
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMK 96
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 49.5 bits (117), Expect = 5e-08
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 262 QGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD 321
+ EV++C LC + H + N C C ++ S ++ ++H + E +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 322 YKCYICGNRYATQKYLEEH-IRLHQGHTYMCNAKFS 356
C C + + + H + +H + + S
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPS 105
Score = 45.7 bits (107), Expect = 1e-06
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 174 QHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQK 233
Y+C+ C + H + +C +C+ F L H K
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHESK 64
Query: 234 HSSERFKCDLCGKVTPYYQHYLRH-MRIHQ 262
++ C C + RH + +H
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 43.7 bits (102), Expect = 7e-06
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 123 ATPLGTQFQCNVCFLMLNNRCYTRFHLLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEG 182
+QC +C L++ H C CS F S Q+H+ E
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHESK-CEY 67
Query: 183 VKYKCKECGKCYTQNTNLKQH 203
K C EC + + + ++ +H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRH 88
Score = 34.5 bits (78), Expect = 0.009
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 102 CYICDEILKDIDDLRYHGLLHATPLGTQFQCNVCFLMLNNRCYTRFHLLKHNWVRFKCDL 161
C +C+ L + + H L C C L + + H K + + C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRN----AAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 162 CSRTFNSQSYLQQHKKHDH 180
C RTF S + +H+ H
Sbjct: 75 CMRTFKSSFSIWRHQVEVH 93
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 47.0 bits (111), Expect = 1e-07
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 184 KYKCKECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHMQKHSSER 238
KY C+ECG + + LK+H+ +H + + C +CN +F + L +HM+ + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 41.6 bits (97), Expect = 1e-05
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 238 RFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
++ C+ CG +H+R H + + C C F K +L HM+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 41.2 bits (96), Expect = 1e-05
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKG 209
++ C+ C S L++H + + Y C C + NL +HM S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 39.3 bits (91), Expect = 8e-05
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 294 KYQCAMCKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
KY C C + ML+KHIR H Y C C + T+ L +H++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 36.2 bits (83), Expect = 9e-04
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 267 HECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEG 319
+ C C L+ H++ H + Y C C + +K L KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 25.4 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
Y C CG R L++HIR H Y C
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 46.0 bits (110), Expect = 2e-07
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQ 196
+ C C + F+ +L H K H + +KC+ +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 40.3 bits (95), Expect = 3e-05
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSER 238
K Y C+ CGK +++ +L H+ K + H+SER
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHI---KQV-----------------------HTSER 40
Query: 239 -FKCDLCGK 246
KC +
Sbjct: 41 PHKCQVWVS 49
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQR-H--EEPNKYQCAMCKKQYAS 306
+ + C C K F+ L H+++ H E P ++C + +S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP--HKCQVWVSGPSS 53
Score = 28.7 bits (65), Expect = 0.41
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 295 YQCAMCKKQYASKKMLEKHIRR-HEGQD-YKCYICG 328
Y C C K ++ L HI++ H + +KC +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 45.7 bits (108), Expect = 9e-07
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFH 216
C RTF++ L H +H V + CY + C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEH--VGGPEQNNHVCYWEE----------------CPR 67
Query: 217 CNKNFTHRALLVRHMQKHSSER-FKC 241
K+F + LV H++ H+ E+
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 38.8 bits (90), Expect = 2e-04
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 260 IHQGLEVHECNLCAKLFACKRSLQDHMQR----HEEPNKYQC-----AMCKKQYASKKML 310
I + C + F+ L H+ E N + C K + +K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 311 EKHIRRHEGQDYKCYIC 327
HIR H G K
Sbjct: 79 VNHIRVHTG--EKSGPS 93
Score = 37.3 bits (86), Expect = 9e-04
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 212 FICFHCNKNFTHRALLVRHMQK----------HSSERFKCDLCGKVTPYYQHYLRHMRIH 261
C++ F+ LV H+ H +C GK + H+R+H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 262 QGLEVHEC 269
G +
Sbjct: 86 TGEKSGPS 93
Score = 32.2 bits (73), Expect = 0.056
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 10/69 (14%)
Query: 289 HEEPNKYQCAMCKKQYASKKMLEKHIRRH--EGQDYKCYIC--------GNRYATQKYLE 338
E C + +++ L H+ G + ++C G + + L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 339 EHIRLHQGH 347
HIR+H G
Sbjct: 80 NHIRVHTGE 88
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC+ CG + Q +L+ H+L H G
Sbjct: 6 SGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
E+ +KC+ CG H H+ IH G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 27.9 bits (63), Expect = 0.60
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
G + ++C C F L+ H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.5 bits (62), Expect = 0.68
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G+ YKC CG R+ +L H+ +H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 25.9 bits (58), Expect = 2.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 157 FKCDLCSRTFNSQSYLQQHK 176
+KC+ C F ++L+ H
Sbjct: 12 YKCETCGARFVQVAHLRAHV 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 41.7 bits (99), Expect = 7e-06
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C+ CG + LK H+ H G
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
E+ + C++CG + Q H+RIH G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 28.6 bits (65), Expect = 0.25
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
Y C ICG R+ + L+ H+R+H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 27.8 bits (63), Expect = 0.53
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
+ C C F H L H++ H+
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 27.8 bits (63), Expect = 0.57
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
G + + C +C F ++L+ H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 25.9 bits (58), Expect = 2.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEG 319
Y C +C ++ + L+ H+R H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 24.8 bits (55), Expect = 6.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 157 FKCDLCSRTFNSQSYLQQH 175
+ C++C F L+ H
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (99), Expect = 8e-06
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 168 SQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRAL 226
S + +K H G + KC +CG + + + L + +C C K+ A
Sbjct: 2 SSGSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRRKTP------MCEKCRKDSCQEAA 54
Query: 227 LVRHMQKHSSER 238
L + S ++
Sbjct: 55 LNKDEGNESGKK 66
Score = 42.0 bits (98), Expect = 1e-05
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKG 209
KC C F +S L + K C++C K Q L + + G
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNKDEGNESG 64
Score = 40.4 bits (94), Expect = 5e-05
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
+ +IH G +C+ C +F C C+K + L K
Sbjct: 8 KRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEG 60
Query: 316 RHEGQ 320
G+
Sbjct: 61 NESGK 65
Score = 32.3 bits (73), Expect = 0.032
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 198 TNLKQHMLSHKGI-FFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLR 256
+ + H G C C F R+ L R + C+ C K + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNK 57
Query: 257 HMRIHQG 263
G
Sbjct: 58 DEGNESG 64
Score = 28.9 bits (64), Expect = 0.48
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 8/70 (11%)
Query: 227 LVRHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDH 285
+ + H +R KC CG + + C C K + +L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGII-------FIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 286 MQRHEEPNKY 295
Sbjct: 59 EGNESGKKTS 68
Score = 27.3 bits (60), Expect = 1.7
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 281 SLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEH 340
S + H +C+ C + + L + + C C + L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR------KTPMCEKCRKDSCQEAALNKD 58
Query: 341 IRLHQG 346
G
Sbjct: 59 EGNESG 64
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC+EC C++Q ++L+ H H G
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 28.3 bits (64), Expect = 0.45
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
E+ +KC C H +H G + +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.65
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C F+ SL+ H H E+P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP--SGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C F+ S L+ H+ H G K
Sbjct: 13 WKCRECDMCFSQASSLRLHQN-VHVGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.7
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G+ +KC C ++ L H +H G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
K ++C ECG+ +T ++L QH H G
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 32.1 bits (74), Expect = 0.016
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
SS + +C CG+ H +H RIH G
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 28.3 bits (64), Expect = 0.42
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
+ H+C+ C + F K L H QR
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QR 33
Score = 26.0 bits (58), Expect = 2.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK 177
+C C R F +S+L QH++
Sbjct: 13 HQCHECGRGFTLKSHLNQHQR 33
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G Y C +CGK +TQ +L H S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 31.1 bits (71), Expect = 0.035
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
++C C K+FT R L H + S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 24.5 bits (54), Expect = 8.8
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNK 294
G + C C K F + SL H + P+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.1 bits (97), Expect = 2e-05
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 176 KKHDHEGVK-YKC--KECGKCYTQNTNLKQHMLSHKGIF-FICFHCNKNFTHRALLVRHM 231
+ ++ Y C + C + ++++ L +H+ H G F C C +NF+ L H+
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 232 QKHS 235
+ H+
Sbjct: 70 RTHT 73
Score = 39.6 bits (93), Expect = 7e-05
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 199 NLKQHMLSHKGIFFIC--FHCNKNFTHRALLVRHMQKHSSER-FKCDLCGKVTPYYQHYL 255
NL +++ + C C++ F+ L RH++ H+ ++ F+C +C + H
Sbjct: 8 NLLNYVVPKMRPY-ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 256 RHMRIH 261
H+R H
Sbjct: 67 THIRTH 72
Score = 39.2 bits (92), Expect = 1e-04
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 276 FACKRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEGQD-YKCYICGNRYA 332
+L +++ P Y C + C ++++ L +HIR H GQ ++C IC ++
Sbjct: 3 PHPMNNLLNYVVPKMRP--YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 333 TQKYLEEHIRLH 344
+L HIR H
Sbjct: 61 RSDHLTTHIRTH 72
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 157 FKCDL--CSRTFNSQSYLQQHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
+ C + C R F+ L +H + H G K ++C+ C + ++++ +L H+ +H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.1 bits (84), Expect = 0.001
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
C + F+ L H++ H +QC +C + ++ L HIR H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
GV YKC +C K ++ L H H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 28.7 bits (65), Expect = 0.34
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ +KC C K L H R+H + +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 27.9 bits (63), Expect = 0.52
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G+ ++C+ C K F+ K L H + H E+P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP--SGP 43
Score = 26.3 bits (59), Expect = 2.0
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C ++F+ + L H++ H K
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + ++T+L +H H G
Sbjct: 2 SSGSS-GSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ +KC CGK + H H RIH G +
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 29.8 bits (68), Expect = 0.12
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C+ C K F L +H + H P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP--SGP 43
Score = 28.2 bits (64), Expect = 0.46
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C + F+ ++L +H++ H G +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L EH R+H G+ ++
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
EG K Y+C ECGK ++ + L QH ++H
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 31.0 bits (71), Expect = 0.043
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
E+ ++C CGK +H H + +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 28.3 bits (64), Expect = 0.40
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
+G + ++C+ C K F+ L H H E+P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP--SGP 43
Score = 27.5 bits (62), Expect = 0.73
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C ++F+ L QH H K
Sbjct: 13 YQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 26.4 bits (59), Expect = 1.9
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
EG+ Y+C CG ++ L +H H ++
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC+ECGK +TQN+ L H H G
Sbjct: 7 GSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 32.5 bits (75), Expect = 0.015
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ FKC+ CGK H R+H G + +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F L H + H E+P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP--SGP 43
Score = 27.5 bits (62), Expect = 0.89
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC+ C + F S L H++ H G K
Sbjct: 13 FKCEECGKRFTQNSQLHSHQR-VHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC CG R+ L H R+H G ++
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KCKECGK + QN +L H+ H G
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ FKC CGK H H+RIH G + +
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.056
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F L H++ H E+P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP--SGP 43
Score = 27.8 bits (63), Expect = 0.64
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC C + F +L H + H G K
Sbjct: 13 FKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC CG + +L H+R+H G ++
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +++N+ L QH H G
Sbjct: 2 SSGSS-GTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV +H +IH G + +
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F+ L H + H E+P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP--SGP 43
Score = 29.0 bits (66), Expect = 0.21
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F+ S L QH+K H G K
Sbjct: 13 YKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.9
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG ++ L +H ++H G ++
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC EC K +TQ+++L H H G
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 32.5 bits (75), Expect = 0.014
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G ++ +CN C K F SL H + H E+P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP--SGP 43
Score = 31.7 bits (73), Expect = 0.028
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ++ FKC+ C K H RIH G + +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.62
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC+ C +TF S L H++ H G K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQR-IHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ +KC C + L H R+H G ++
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L H H G
Sbjct: 7 GSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ +KC+ CGKV H H RIH G + +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L +H + H E+P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP--SGP 43
Score = 30.2 bits (69), Expect = 0.081
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+KC+ C + F S+L H + H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 4.6
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G+ YKC CG + +L H R+H G +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + ++C +CGK + Q +N QH H G
Sbjct: 2 SSGSS-GHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 31.0 bits (71), Expect = 0.040
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
ER +C CGK ++++H RIH G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G+ ++C CG + +H R+H G
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 25.2 bits (56), Expect = 5.0
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+C C + F S QH++ H G K
Sbjct: 13 HRCSDCGKFFLQASNFIQHRR-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.6
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
G H C+ C K F + H +R
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RR 33
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK Y + +L H H G
Sbjct: 7 GSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C C K + + L H + H E+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL--SGP 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ +KC CGK H R+H G ++ +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG Y + L+ H R+H G ++
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 24.8 bits (55), Expect = 7.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C + + + L H++ H G K
Sbjct: 13 YKCVECGKGYKRRLDLDFHQR-VHTGEKLSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 4e-05
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++CKECG ++ + +L +H+ SH+
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 30.6 bits (70), Expect = 0.060
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ E+ F+C CG + +H+R H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 29.9 bits (68), Expect = 0.11
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQC 297
G + +C C F+ SL H++ HE +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 27.2 bits (61), Expect = 1.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQD-YKCY 325
+QC C ++ L KH+R HE D
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 25.2 bits (56), Expect = 5.2
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C C F+ L +H + HE
Sbjct: 13 FQCKECGMNFSWSCSLFKHLR-SHERTDPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C ECGK +T +NL H H G
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.2 bits (69), Expect = 0.097
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C C K F + +L H + H E+P
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP--SGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ E+ ++C CGK + H +IH G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F +S L H+K H G K
Sbjct: 13 YRCAECGKAFTDRSNLFTHQK-IHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.8 bits (97), Expect = 4e-05
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 200 LKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMR 259
K+++ +HKGIF + L ++ K + YL +
Sbjct: 10 SKKYLSNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 260 IHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
+ + C LC F+ SL+ H++ E C +CKK++ S H+ +
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKK 123
Score = 40.3 bits (93), Expect = 1e-04
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFH 216
+ L +K + + +++ L + + S F+C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 217 CNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMR 259
C F+ L +H++ C +C K L H+
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHT-KVCPVCKKEFTSTDSALDHVC 121
Score = 38.8 bits (89), Expect = 5e-04
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 4/119 (3%)
Query: 224 RALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQ 283
+ +++ H + + Y H L + + + + + S
Sbjct: 7 DSGSKKYLSNHKG--IFIHVTLEELKRY-HQLTPEQKRLIRAIVKTLIHNPQLLDESSYL 63
Query: 284 DHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEHIR 342
+ + +++ C +C ++S L++HIR E C +C + + +H+
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-HTKVCPVCKKEFTSTDSALDHVC 121
Score = 37.2 bits (85), Expect = 0.002
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 6/124 (4%)
Query: 88 SPSDPEIMDTKNVLCYICDEILKDIDDLRYHGLLHATPLGTQFQCNVCFLMLNNRCYTRF 147
S S + + K + ++ E LK L + N L + Y
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLL--DESSYLYR 65
Query: 148 HLLKHNWVRFKCDLCSRTFNSQSYLQQH-KKHDHEGVKYKCKECGKCYTQNTNLKQHMLS 206
L +F C LC F+S L+QH + +H C C K +T + H+
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT---KVCPVCKKEFTSTDSALDHVCK 122
Query: 207 HKGI 210
I
Sbjct: 123 KHNI 126
Score = 32.6 bits (73), Expect = 0.075
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
+++ H+G+ +H + + L +R + L + +
Sbjct: 12 KYLSNHKGIFIH---VTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA 68
Query: 316 RHEGQDYKCYICGNRYATQKYLEEHIRLHQGHTYMC 351
+ C +C +++ L++HIR + HT +C
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTE-HTKVC 103
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 5e-05
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C+ECGK +TQN++L H H G
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 32.1 bits (74), Expect = 0.020
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ F+C+ CGK H H R+H G + +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.050
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F L H + H E+P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP--SGP 43
Score = 27.9 bits (63), Expect = 0.61
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C+ C + F S+L H++ H G K
Sbjct: 13 FQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ ++C CG R+ +L H R+H G ++
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC++CGK Y NL H H G
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 31.0 bits (71), Expect = 0.041
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C C K + K +L H + H E P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP--SGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGK + H ++H G +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.5 bits (62), Expect = 0.77
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + +NS+ L H+K H G +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQK-VHTGERPSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG Y ++ L+ H ++H G ++
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C ECGK +T +NL +H H
Sbjct: 7 GTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 30.6 bits (70), Expect = 0.057
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C CGK + ++H +IH + +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 30.6 bits (70), Expect = 0.072
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C C K F + +L H + H ++P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP--SGP 43
Score = 24.8 bits (55), Expect = 7.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C C + F +S L +H+K H K
Sbjct: 13 YICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-05
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
K YKC++CGK Y + NL H H G
Sbjct: 7 GSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 29.4 bits (67), Expect = 0.15
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
+ ++C C K + + +L H + H E+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT--SGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ +KC+ CGK + H R+H G + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 27.5 bits (62), Expect = 0.90
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + +N + L H++ H G K
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGP 43
Score = 25.5 bits (57), Expect = 4.1
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
+ YKC CG Y + L+ H R+H G T ++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC ECGK Y Q +L QH H G
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ FKC CGK H +H R+H G + +
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.045
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K + + L H + H E+P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP--SGP 43
Score = 27.9 bits (63), Expect = 0.54
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC C +++N + +L QH++ H G K
Sbjct: 13 FKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC CG Y + +L +H R+H G ++
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+CKEC K + Q +L QH H G
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 30.6 bits (70), Expect = 0.062
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S ++ ++C C K H +H R+H G +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 28.7 bits (65), Expect = 0.31
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
++C C +TF +L QHK+ H G +
Sbjct: 13 YECKECRKTFIQIGHLNQHKR-VHTGERSSGPSS 45
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC C K F L H + H E
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS--SGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L H H G
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 33.3 bits (77), Expect = 0.008
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV H H RIH G++ +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 31.3 bits (72), Expect = 0.037
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L +H + H +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP--SGP 43
Score = 28.3 bits (64), Expect = 0.37
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F S+L H++ H GVK
Sbjct: 13 YKCNECGKVFTQNSHLANHQR-IHTGVKPSGP 43
Score = 27.1 bits (61), Expect = 0.99
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L H R+H G ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC+ECGK + +L H + H G
Sbjct: 7 GTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 32.9 bits (76), Expect = 0.008
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C C K F C+R L H H E+P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP--SGP 43
Score = 29.0 bits (66), Expect = 0.20
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGK + H +H G + +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F + L H H G K
Sbjct: 13 YKCEECGKGFICRRDLYTHHM-VHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + ++ L H +H G ++
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K + C +CGK ++ + L QH H G
Sbjct: 2 SSGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F+ L H + H E+P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP--SGP 43
Score = 28.6 bits (65), Expect = 0.32
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ F C CGK + +H RIH G + +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.83
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F C C + F+ L QH++ H G K
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.9
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ + C CG ++ L +H R+H G ++
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + Y C CGK +T +NL +H H G
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + C +C K F + +L H + H E+P
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP--SGP 43
Score = 30.9 bits (71), Expect = 0.048
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ER + C +CGK + ++H +IH G + +
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C +C + F +S L +H+K H G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 7e-05
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK ++Q + L +H H G
Sbjct: 7 GTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGK RH RIH G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K F+ L H + H E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP--SGP 43
Score = 27.5 bits (62), Expect = 0.77
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F+ S L +H++ H G K
Sbjct: 13 YKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG ++ L H R+H G ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L +H H G
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV H +RH IH G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.040
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L H H E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP--SGP 43
Score = 28.6 bits (65), Expect = 0.37
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F S+L +H+ H G K
Sbjct: 13 YKCNECGKVFTQNSHLVRHRG-IHTGEKPSGP 43
Score = 24.7 bits (55), Expect = 7.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L H +H G ++
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.7 bits (91), Expect = 7e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC ECGK +++ + L H H G
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 31.3 bits (72), Expect = 0.032
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F+ + +L H + H E+P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP--SGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ FKC CGK H ++H G + +
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC C + F+ +S L H K H G K
Sbjct: 13 FKCVECGKGFSRRSALNVHHK-LHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G+ +KC CG ++ + L H +LH G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C CGK + + +L QH+ H
Sbjct: 2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C++CGK H +H+R+H + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + CN+C K F L H++ H E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL--SGP 43
Score = 27.5 bits (62), Expect = 0.77
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCK 188
+ C++C + F ++L QH + H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS 44
Score = 25.6 bits (57), Expect = 4.2
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y C +CG + +L +H+R+H T ++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C +CGK ++Q +L H+ H G
Sbjct: 6 SGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 32.9 bits (76), Expect = 0.007
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
G + + C+ C K F+ K SL H++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
E+ ++CD CGK + H+R+H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 26.8 bits (60), Expect = 1.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G+ Y+C CG ++ + L HIR+H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + ++NL H + H G
Sbjct: 2 SSGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 30.9 bits (71), Expect = 0.043
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K F +L H H E+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP--SGP 43
Score = 30.2 bits (69), Expect = 0.096
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGK + + H IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.48
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F + S L H+ H G K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + L H +H G ++
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 8e-05
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+CK C K +TQ +L QH +H G
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC +C+K F K L H + H E+P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP--SGP 43
Score = 31.0 bits (71), Expect = 0.054
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C +C K H +H + H G + +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.098
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
++C +CS+ F +++L QH+K H G K
Sbjct: 13 YECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 3.4
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCN 352
G+ Y+C +C + + +L +H + H G +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C ECGK + Q NL QH H G
Sbjct: 7 GTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 31.3 bits (72), Expect = 0.037
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C CGK + +H RIH G + +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.064
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C C K FA K +L H + H E+P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP--SGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F ++ L QH++ H G K
Sbjct: 13 YRCGECGKAFAQKANLTQHQR-IHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 9e-05
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C ECGK ++Q + L +H H G
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 31.7 bits (73), Expect = 0.024
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ + ++C+ CGK RH R+H G + +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.031
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K F+ L H + H E+P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP--SGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C+ C + F+ S L +H++ H G K
Sbjct: 13 YQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G Y+C CG ++ L H R+H G ++
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.3 bits (90), Expect = 9e-05
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
K Y C ECGK +T+ +L +H H
Sbjct: 2 SSGSS-GTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 28.7 bits (65), Expect = 0.26
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ + + C+ CGK H RH +IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 28.7 bits (65), Expect = 0.28
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCA 298
+ + CN C K F L H + H +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 25.6 bits (57), Expect = 3.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK 177
+ C+ C + F +L +H+K
Sbjct: 13 YNCNECGKAFTRIFHLTRHQK 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + +KC ECGK + + ++L H+ H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S ER FKC+ CGK H H+R+H + +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 28.3 bits (64), Expect = 0.38
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
FKC+ C + F +S+L H + H K
Sbjct: 13 FKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 27.5 bits (62), Expect = 0.74
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +CN C K F + L H++ H E+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS--SGP 43
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ +KC CG + + +L H+RLH + ++
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC+ CGK + +++L QH H G
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC +CGK H ++H +H G +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 30.2 bits (69), Expect = 0.095
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C +C K F L H H E P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP--SGP 43
Score = 27.9 bits (63), Expect = 0.51
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC +C + F S+L QH H G +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 27.5 bits (62), Expect = 0.78
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC +CG + +L +H +H G ++
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC CGK ++Q+++L+ H H G
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 31.3 bits (72), Expect = 0.037
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
E+ +KCD+CGK H H R+H G + +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.097
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C++C K F+ LQ H + H E+P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP--SGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KCD+C + F+ S+LQ H++ H G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.49
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC +CG ++ +L+ H R+H G ++
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + N+ L +H H G
Sbjct: 2 SSGSS-GTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 32.5 bits (75), Expect = 0.013
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV + + RH RIH G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L H + H E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP--SGP 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+KC+ C + F SYL +H++ H G K
Sbjct: 13 YKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 1.9
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G+ YKC CG + YL H R+H G +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L +H H G
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 31.7 bits (73), Expect = 0.025
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV H RH IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L H H E+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP--SGP 43
Score = 28.2 bits (64), Expect = 0.41
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F S+L +H+ H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L H +H G ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + N++ QH H G
Sbjct: 7 GTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 31.4 bits (72), Expect = 0.036
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC CGK +H R+H G +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 31.4 bits (72), Expect = 0.036
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C C K F S H + H + P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP--SGP 43
Score = 27.5 bits (62), Expect = 0.69
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C + F S QH++ H G +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 27.2 bits (61), Expect = 1.2
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +H RLH G ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L +H H G
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 31.7 bits (73), Expect = 0.026
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ++ +KC+ CGKV H RH IH G + +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.22
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L H H E+P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP--SGP 43
Score = 28.2 bits (64), Expect = 0.39
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F S+L +H+ H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L H +H G ++
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K KC ECGK + + L H +H
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 31.4 bits (72), Expect = 0.035
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ KC CGK + + H R H + +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 27.5 bits (62), Expect = 0.69
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F K L H + H ++
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH--SGP 43
Score = 26.0 bits (58), Expect = 2.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
KC C + F +S L H++ H K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQR-THVDDKHSGP 43
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ KC CG + + L H R H ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC +CGK +T + L+ H H G
Sbjct: 7 GTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C+ C K F K L+ H + H E
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH--SGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC CGK + H + H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C ++F +S L+ H+K H G +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQK-CHTGERHSGP 43
Score = 24.8 bits (55), Expect = 6.6
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ YKC CG + + L H + H G ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C+ECGK + ++ L++H H G
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 32.5 bits (75), Expect = 0.013
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C C K F LQ+H + H E+P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP--SGP 43
Score = 32.1 bits (74), Expect = 0.017
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C+ CGK + H RIH G + +
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y C CG + L+EH R+H G ++
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C+ C + F S LQ+H++ H G K
Sbjct: 13 YNCEECGKAFIHDSQLQEHQR-IHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC +CGK +T+ + L H SH G
Sbjct: 7 GTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C+ C K F K L H Q H E
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH--SGP 43
Score = 27.9 bits (63), Expect = 0.69
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC CGK H + H G +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 25.9 bits (58), Expect = 3.2
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + + L H + H G ++
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 25.5 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C + F +S L H++ H G +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + +N++L +H L H G
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC CGKV H RH IH G + +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.029
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C+ C K+F L H H E+P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP--SGP 43
Score = 28.2 bits (64), Expect = 0.52
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC C + F S+L +H+ H G K
Sbjct: 13 YKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC+ CG + +L H +H G ++
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK +TQN++L +H H G
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 32.1 bits (74), Expect = 0.016
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGKV H RH R+H G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K+F L H + H +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP--SGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F S+L +H++ H G K
Sbjct: 13 YKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + +L H R+H G ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y CKECGK +++ L +H H G
Sbjct: 7 GTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 31.3 bits (72), Expect = 0.030
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +++ C C K F+ L H + H E+P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP--SGP 43
Score = 30.6 bits (70), Expect = 0.060
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C CGK L+H R+H G + +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.9
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y C CG ++ L +H RLH G ++
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 26.0 bits (58), Expect = 3.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C C ++F+ L +H++ H G K
Sbjct: 13 YNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + +KC ECGK + Q+ +L QH H G
Sbjct: 7 GTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ER KC+ CGK H ++H RIH G + +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.019
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G H+CN C K F L H + H E+P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP--SGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
KC+ C ++F ++L QH++ H G K
Sbjct: 13 HKCNECGKSFIQSAHLIQHQR-IHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.8
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC CG + +L +H R+H G ++
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC+ECGK + N+ H SH G
Sbjct: 7 GSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 30.2 bits (69), Expect = 0.096
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C C K F H + H E+P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP--SGP 43
Score = 29.1 bits (66), Expect = 0.19
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ FKC+ CGK H R H G + +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.76
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECG 191
FKC+ C + F + S H++ H G K G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQR-SHSGEKPSGP-SSG 46
Score = 25.6 bits (57), Expect = 3.9
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC CG + T H R H G ++
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + C ECGK +T TNL H H G
Sbjct: 7 GTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 30.2 bits (69), Expect = 0.092
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G C+ C K+F K +L H + H E P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP--SGP 43
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E F C CGKV + + + H +IH G +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 24.4 bits (54), Expect = 9.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G++ + C CG + + L H ++H G ++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K +KC CGK + + L +H + H
Sbjct: 7 GTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ FKCD+CGK RH +H + +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.060
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +C++C K F + L H H E+P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP--SGP 43
Score = 30.5 bits (70), Expect = 0.076
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKECG 191
FKCD+C ++F +S L +H H K G
Sbjct: 13 FKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP-SSG 46
Score = 25.9 bits (58), Expect = 2.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ +KC ICG + + L H +H ++
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+CKECGK ++Q T+L QH H G
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C CGK H ++H R+H G + +
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC C K F+ L H + H E+P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP--SGP 43
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F+ ++L QH++ H G K
Sbjct: 13 YECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 4.7
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y+C CG ++ +L +H R+H G ++
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C ECGK + Q ++L +H H G
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 30.6 bits (70), Expect = 0.063
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C+ CGK H RH RIH G + +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + CN C K F K L H + H E+P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP--SGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+ C+ C ++F +S+L +H++ H G K
Sbjct: 13 YICNECGKSFIQKSHLNRHRR-IHTGEKPSGPSS 45
Score = 25.9 bits (58), Expect = 2.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G+ Y C CG + + +L H R+H G +
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C EC + ++ N L QH H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 28.8 bits (65), Expect = 0.25
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
S E+ + C C + ++H ++H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 27.3 bits (61), Expect = 0.76
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
+ C C + F+ LV+H + H+ +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKS 37
Score = 25.0 bits (55), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK 177
+ C C TF+ + L QH+K
Sbjct: 11 YSCAECKETFSDNNRLVQHQK 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + Y C ECGK + ++++L +H+ H
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S ER + C+ CGK + H + H++ H + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.6 bits (70), Expect = 0.074
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQCA 298
G + CN C K F L +H++RH E+ +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS--SGPS 44
Score = 28.6 bits (65), Expect = 0.36
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C+ C + F S+L +H K H K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC C K + ++L H H G
Sbjct: 2 SSGS-SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 32.1 bits (74), Expect = 0.017
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++C++C K F SL H + H E+P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP--SGP 43
Score = 30.9 bits (71), Expect = 0.049
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KCD+C K Y H RIH G + +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+KCD+C ++F S L H++ H G K
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPSS 45
Score = 24.8 bits (55), Expect = 6.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G+ YKC +C + L H R+H G +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C CGK + + L +H H G
Sbjct: 2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ + CD CGK +RH RIH G + +
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C+ C K F L H + H E+P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP--SGP 43
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ CD C + F + L +H++ H G K
Sbjct: 13 YVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.0
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y C CG + L H R+H G ++
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K + C C K ++ + L H +H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F C C + F+S+SYL H++ H K
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGP 41
Score = 28.7 bits (65), Expect = 0.33
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ F C C K + L H + H + +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 27.5 bits (62), Expect = 0.85
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
+ C C ++++ YL H + H ++
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 259 RIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + C+ C K F+ K L H Q H E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP--SGP 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G Y+C ECGK +++ L H +H G
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 25.5 bits (57), Expect = 3.6
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC C K+F+ K L H + H +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG--PSS 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C EC K + +NL H +H G
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 32.8 bits (76), Expect = 0.009
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + EC+ C K F K +L H + H E+P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP--SGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
+ E+ F+C C K + + H R H G +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C C + FN++S L H++ H G K
Sbjct: 13 FECSECQKAFNTKSNLIVHQR-THTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C +CGK + + + L H H G
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC+ C K F K L H + H E P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP--SGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C CGK H RIH G +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 24.8 bits (55), Expect = 6.8
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C CG + + L H R+H G ++
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
GVK Y C ECGK ++ ++L H + H G
Sbjct: 7 GTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G++ + CN C K F+ SL H H E+P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP--SGP 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ + + C+ CGK Y H IH G + +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C+ C + F+ S L H+ H G K
Sbjct: 13 YMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 6.2
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G Y C CG ++ L H +H G +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C ECGK +T+ + L H H G
Sbjct: 7 GTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 31.3 bits (72), Expect = 0.040
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + EC C K F K +L H + H E+P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP--SGP 43
Score = 28.3 bits (64), Expect = 0.44
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ + F+C CGK H +IH G + +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C C + F +S L H+K H G K
Sbjct: 13 FECTECGKAFTRKSTLSMHQK-IHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y CKECGK + + L +H H G
Sbjct: 7 GTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C C K F L H + H E+P
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP--SGP 43
Score = 31.8 bits (73), Expect = 0.024
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ + C CGK + L+H R+H G + +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+ C C ++F S L +H++ H G K
Sbjct: 13 YNCKECGKSFRWASCLLKHQR-VHSGEKPSGPSS 45
Score = 25.2 bits (56), Expect = 5.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCN 352
G+ Y C CG + L +H R+H G +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C CGK +T+ + L H H G
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC++C K F K L H Q H E+P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP--SGP 43
Score = 27.9 bits (63), Expect = 0.61
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C +CGK H +IH G + +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 2.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C ICG + + L H ++H G ++
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C CGK ++ +L H H G
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC++C K F+ ++SL H + H ++P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP--SGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C +CGK + Q H RIH G + +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C +CG ++ ++ L H R+H G ++
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C CGK + NL H H G
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 32.5 bits (75), Expect = 0.011
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + EC C K F K +L H + H E+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS--GPS 43
Score = 30.2 bits (69), Expect = 0.081
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ++ F+C CGK + + H RIH G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 27.5 bits (62), Expect = 0.82
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKC 241
F C HC K+F + LV H + H+ E+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 26.0 bits (58), Expect = 2.4
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
GQ ++C CG + + L H R+H G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 24.8 bits (55), Expect = 6.9
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C C ++F ++ L H++ H G K
Sbjct: 13 FECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C EC K + +NL H +H G
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +ECN C K F K +L H + H E
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG--PSS 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
+ E+ ++C+ C K + + H R H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 25.9 bits (58), Expect = 2.7
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C+ C + FN++S L H++ H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQR-THTGESGPSS 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
GVK Y C +C K ++ + L H SH G
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G++ + C+ CAK F+ K L H + H +P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP--SGP 43
Score = 28.3 bits (64), Expect = 0.38
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ + + C C K + H R H G++ +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G Y C C ++ + L H R H G ++
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 26.0 bits (58), Expect = 3.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C C++TF+ +S L H++ H GVK
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C +CGK ++ ++L H H G
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +ECN C K F+ + SL H H ++P
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP--SGP 43
Score = 31.0 bits (71), Expect = 0.049
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++C+ CGK H IH G + +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCK 188
++C+ C + F+ +S L H+ H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPS 44
Score = 25.2 bits (56), Expect = 6.3
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C CG ++ + L H +H G ++
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C ECGK ++ ++ L H H G
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + EC C K F+ L H + H E+P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP--SGP 43
Score = 29.0 bits (66), Expect = 0.20
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
+ E+ F+C CGK H RIH G +
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.3
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ ++C CG ++ L H R+H G ++
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 4.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
F+C C ++F+ S L H++ H G K
Sbjct: 13 FECAECGKSFSISSQLATHQR-IHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K ++C+ECGK ++ N+ L H H G
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + HEC C K F+ L H + H E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP--SGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +C CGK + + H RIH G +
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 26.0 bits (58), Expect = 2.5
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ ++C CG ++ L H R+H G ++
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 24.4 bits (54), Expect = 9.1
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+C C ++F+ S L H++ H G
Sbjct: 13 HECRECGKSFSFNSQLIVHQR-IHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C ECGK ++ + L HM +H G
Sbjct: 7 GAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + C+ C K F+ K L HM+ H E+P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP--SGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
+ E+ + C CGK + + HMR H G +
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C C + F+S+SYL H + H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMR-THSGEKPSGP 43
Score = 26.4 bits (59), Expect = 2.0
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y C CG ++++ YL H+R H G ++
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y+C+ECGK + Q +L H H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K YKC ECGK + ++L H +H G
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + ++CN C K F + SL H H E+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP--SGP 43
Score = 30.6 bits (70), Expect = 0.054
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ +KC+ CGK H H G + +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+KC+ C + F ++S L H+ H G K
Sbjct: 13 YKCNECGKAFRARSSLAIHQA-THSGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.3
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ YKC CG + + L H H G ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C C K ++ + +L QH H G
Sbjct: 2 SSGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 32.9 bits (76), Expect = 0.011
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +EC++C K F+ SL H + H E+P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP--SGP 43
Score = 30.6 bits (70), Expect = 0.072
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ ++CD+C K ++ +H R+H G + +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++CD+C + F+ + L QH++ H G K
Sbjct: 13 YECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.6
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ Y+C +C ++ L +H R+H G ++
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K + C ECGK + + L+ H H G
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 31.0 bits (71), Expect = 0.049
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
S E+ CD CGK Y H R+H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 29.5 bits (67), Expect = 0.17
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQR 288
G + H C+ C K F +L+ H QR
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QR 33
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + Y+C ECGK + ++L H SH G
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC C K F K SL H + H E+P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP--SGP 43
Score = 30.6 bits (70), Expect = 0.060
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ +R ++C CGK + H R H G + +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.31
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
++C C + F ++S L H++ H G K
Sbjct: 13 YECIECGKAFKTKSSLICHRR-SHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCN 352
GQ Y+C CG + T+ L H R H G +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y+C ECGK + + L H +H G
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + +ECN C K F K L H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG--PSS 43
Score = 31.3 bits (72), Expect = 0.031
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
S E+ ++C+ CGK + + H R H G+
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 25.2 bits (56), Expect = 5.7
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C+ C + F +S L H++ H GV
Sbjct: 13 YECNECGKAFIWKSLLIVHER-THAGVSGPSS 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 174 QHKKHDHEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + Y+C ECGK + Q + L H H+G
Sbjct: 2 SSGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 31.3 bits (72), Expect = 0.032
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC+ C K F K +L H + H E+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP--SGP 43
Score = 28.3 bits (64), Expect = 0.50
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ER ++C CGK H RIH+G + +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 25.6 bits (57), Expect = 4.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F +S L H++ H G K
Sbjct: 13 YECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.9
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C CG + + L H R+H+G ++
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G Y+C ECGK +++ L H +H G
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC+ C K F+ K L H + H E+P
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP--SGP 43
Score = 30.2 bits (69), Expect = 0.091
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E ++C CGK + H R H G + +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 25.5 bits (57), Expect = 3.8
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G++ Y+C+ CG ++ + L H R H G ++
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 24.4 bits (54), Expect = 9.6
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F+ + L H++ H G K
Sbjct: 13 YECHECGKAFSRKYQLISHQR-THAGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G Y+C ECGK + + L H +H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 27.5 bits (62), Expect = 0.69
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 234 HSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
S E ++C CGK + H R H G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 25.9 bits (58), Expect = 2.6
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 259 RIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC+ C K F K L H + H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG--PSS 41
Score = 24.8 bits (55), Expect = 7.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICG 328
Y+C+ C K + K L H R H G+ G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE--SGPSSG 42
Score = 24.4 bits (54), Expect = 9.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + FN + L H++ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQR-THAGESGPSS 41
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G K Y C ECGK ++Q + L H +H G
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G + + CN C K F+ K L H + H E+P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP--SGP 43
Score = 30.2 bits (69), Expect = 0.087
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
S E+ + C+ CGK H R H G + +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.35
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKE 189
+ C+ C +TF+ +S L H++ H G K
Sbjct: 13 YGCNECGKTFSQKSILSAHQR-THTGEKPSGPSS 45
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCN 352
G+ Y C CG ++ + L H R H G +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G+K Y C ECGK + + L H +H G
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G++ + CN C K F K L H + H E
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG--PSS 43
Score = 28.2 bits (64), Expect = 0.44
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHEC 269
+ + + C+ CGK + + H R H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
+ C+ C + F S+SYL H + H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTR-THTGESGPSS 43
Score = 25.5 bits (57), Expect = 4.5
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQG 346
G Y C CG + ++ YL H R H G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQH 203
G K Y+C ECGK + QNT+L +H
Sbjct: 7 GTGKKPYECIECGKAFIQNTSLIRH 31
Score = 31.4 bits (72), Expect = 0.039
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH----EEPNKYQC 297
G + +EC C K F SL H R+ E+P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH-WRYYHTGEKP--SGP 44
Score = 29.5 bits (67), Expect = 0.14
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKC 187
++C C + F + L +H ++ H G K
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 27.9 bits (63), Expect = 0.56
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMR-IHQGLEVHECN 270
+ ++ ++C CGK +RH R H G + +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G + Y+C ECGK + + + L H H G
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 32.5 bits (75), Expect = 0.012
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH--EEPNKYQC 297
G +EC+ C K FA K +L H + H E+P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP--SGP 43
Score = 30.5 bits (70), Expect = 0.071
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ ER ++C CGK + H RIH G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 312 KHIRRHEGQD-YKCYICGNRYATQKYLEEHIRLHQGH-TYMCNA 353
G+ Y+C CG +A + L H R+H G ++
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSHKG 209
G +KC +C + +TQ L QH +H
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 33.7 bits (77), Expect = 0.005
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 229 RHMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIHQG 263
+ E FKC C +V + ++H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 28.7 bits (64), Expect = 0.31
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
F C C++ FT R LV+H + H+ +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 28.7 bits (64), Expect = 0.31
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 157 FKCDLCSRTFNSQSYLQQHKK 177
FKC C R F ++YL QH++
Sbjct: 13 FKCSKCDRVFTQRNYLVQHER 33
Score = 26.7 bits (59), Expect = 1.3
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 285 HMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQ 320
N ++C+ C + + + L +H R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 26.7 bits (59), Expect = 1.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
+KC C + + YL +H R H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 35.8 bits (83), Expect = 0.001
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 179 DHEGVK-YKCK--ECGKCYTQNTNLKQHMLSHKGIF-FICFH--CNKNFTHRALLVRHMQ 232
D ++ + C CGK Y ++++LK H +H G F C C + F L RH +
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 233 KH 234
H
Sbjct: 71 TH 72
Score = 32.7 bits (75), Expect = 0.022
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 279 KRSLQDHMQRHEEPNKYQCAM--CKKQYASKKMLEKHIRRHEGQD-YKCYI--CGNRYAT 333
+ C+ C K Y L+ H R H G+ + C C R+A
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 334 QKYLEEHIRLH 344
L H R H
Sbjct: 62 SDELSRHRRTH 72
Score = 32.4 bits (74), Expect = 0.027
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 229 RHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIHQGLEVHECNL--CAKLFACKRSLQ 283
S R C CGK H H R H G + C+ C + FA L
Sbjct: 7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 284 DHMQRH 289
H + H
Sbjct: 67 RHRRTH 72
Score = 32.0 bits (73), Expect = 0.033
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 212 FICFH--CNKNFTHRALLVRHMQKHSSER-FKCDL--CGKVTPYYQHYLRHMRIH 261
IC H C K + + L H + H+ E+ F C C + RH R H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 59/402 (14%), Positives = 114/402 (28%), Gaps = 135/402 (33%)
Query: 22 RESFLIQV----EEYSASDTDS---DLDDKI--FLSPTRKPKCSVKIKKEDTDVDIFFRS 72
+E F + E ++A D + +L K ++S +P K +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS------KVGQFDQVLNLC 87
Query: 73 RRQYNNTY---ND--NLVQISPSDPE--IMDTKNVL-CYI--CDEILKDIDDLRYHGLLH 122
++ N Y ND L + + ++ TK ++ YI + D L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 123 ATPLG-----TQF--QCN--VCFLMLNNRCYTRFHLLKHNWVRFKCDLCSRTFNSQSYLQ 173
A G F Q N F L + Y +H+L DL S L
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVG-------DLIKF---SAETLS 196
Query: 174 QHKKHDHEGVKYKCKECGKCYTQNTNLKQHM----------------LSHKGIFFICFHC 217
+ + + K +TQ N+ + + +S I I
Sbjct: 197 ELIRTTLD--------AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI---- 244
Query: 218 NKNFTHRALLVRHMQKHSSERFKCDLCGKVT------------------PYYQHYLRHMR 259
H + + + E L G ++ + +
Sbjct: 245 --QLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 260 I--HQGLEVHEC----NLCAKLFACKRSLQDHMQRHE-EPNKYQCAM--CKKQYASKKML 310
+ G+ +E +L + L+D ++ +E P M +++ +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSI------LEDSLENNEGVP----SPMLSISN--LTQEQV 349
Query: 311 EKHIRRHEGQDYKCYICGNRYATQKYLEE----HIRLHQGHT 348
+ ++ + T +L I L G
Sbjct: 350 QDYVNK----------------TNSHLPAGKQVEISLVNGAK 375
Score = 30.8 bits (69), Expect = 0.79
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 42/119 (35%)
Query: 16 ERIKKERESFLIQVE---------EYSA--SDTDSDLDDKIFLSPTRKPKCSVKIKKEDT 64
E +K + LI + EY+A S D +S E
Sbjct: 1745 EDLKSK---GLIPADATFAGHSLGEYAALASLADV-------MSI------------ESL 1782
Query: 65 DVDI-FFRSR-------RQYNNTYNDNLVQISPSDPEIMDTKNVLCYICDEILKDIDDL 115
V++ F+R R N ++ I+P ++ L Y+ + + K L
Sbjct: 1783 -VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Score = 28.9 bits (64), Expect = 3.8
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 67 DIFFRSRRQYNNTYNDNLVQISPSDPEIMDTKNVLCYICDEILKDIDDLRYHGLLHATPL 126
D++ R+ + +TY +++ I ++P N+ + E K I + Y ++ T +
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNP-----VNLTIHFGGEKGKRIRE-NYSAMIFETIV 1697
Query: 127 GTQFQCNVCFLMLNNRCYTRFHLLKHNWVRFKCDLCSRTFNSQ 169
+ + F +N H + + K L S T +Q
Sbjct: 1698 DGKLKTEKIFKEIN------EHSTSYTFRSEK-GLLSATQFTQ 1733
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.1 bits (78), Expect = 0.004
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 184 KYKCKECGKCYTQNTNLKQHMLSHKG 209
+ C+ CGK + +L +H LSH G
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSG 37
Score = 29.9 bits (67), Expect = 0.14
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER-FKCDLC 244
C C K F L RH HS E+ +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.16
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 267 HECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMC 300
C +C K+F L H H Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.21
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 232 QKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCA 273
+ ++ C++CGK+ H RH H G + + +
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.4 bits (63), Expect = 0.41
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVK-YKCKEC 190
+ C++C + F +L +HK H G K Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPS 46
Score = 27.2 bits (60), Expect = 1.1
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 288 RHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICG 328
+ C +C K + L +H H G+ K Y G
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE--KPYSSG 44
Score = 26.4 bits (58), Expect = 2.5
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 315 RRHEGQDYKCYICGNRYATQKYLEEHIRLHQG 346
+ C ICG + +L H H G
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.011
Identities = 45/365 (12%), Positives = 95/365 (26%), Gaps = 111/365 (30%)
Query: 7 TNVMTRRVSERIKKERESFLIQVEEYSASDTDSDLDDKIFLSPTRKPKCSVKIKKEDTDV 66
++ + V E ++ + FL + + ++++ R D
Sbjct: 76 EEMVQKFVEEVLRINYK-FL--MSPIKTEQRQPSMMTRMYIE-QRDRLY--------NDN 123
Query: 67 DIF---FRSRRQYNNTYNDNLVQISPSDPEIMDT-----KNVLCYICDEILKDIDDLRYH 118
+F SR Q L+++ P+ ++D K + +D +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---------LDVCLSY 174
Query: 119 GLLHATP-------LGTQFQCNVCFLMLNNRCYTRFHLLKHNWVRFKCDLCSRTFNSQSY 171
+ L ML Y + + SR+ +S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----------QIDPNWTSRSDHSSNI 223
Query: 172 -------------LQQHKKH-------DH-------EGVKYKCKECGKCYTQNTNLKQHM 204
L + K + + CK T+ + +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFL 281
Query: 205 LSHKGIFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGL 264
+ H + T + L K R Q L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVK--------------SLLLKYL--------DCRP-QDL 318
Query: 265 --EVHECN-LCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQD 321
EV N + A S++D + + ++ C K ++E + E +
Sbjct: 319 PREVLTTNPRRLSIIA--ESIRDGLAT---WDNWKHVNCDKL---TTIIESSLNVLEPAE 370
Query: 322 YK-CY 325
Y+ +
Sbjct: 371 YRKMF 375
Score = 34.1 bits (77), Expect = 0.076
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 52/178 (29%)
Query: 199 NLKQHMLS-HKGIFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKVTP--YYQHYL 255
K+ +S + + +V H + F D Y+ ++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP--KTFDSDDLIPPYLDQYFYSHI 477
Query: 256 RHMRIHQGLEVHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIR 315
H H++ E P + + + + + LE+ IR
Sbjct: 478 GH---------------------------HLKNIEHPERM--TLFRMVFLDFRFLEQKIR 508
Query: 316 RHEG-------------QD---YKCYICGNRYATQKYLEEHIR-LHQGHTYMCNAKFS 356
H+ Q YK YIC N ++ + + L + + +K++
Sbjct: 509 -HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.5 bits (73), Expect = 0.016
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVK 184
FKC+ C +TF+ YL QH++ GVK
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 26.3 bits (57), Expect = 2.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 261 HQGLEVHECNLCAKLFACKRSLQDHMQRH 289
Q + +CN C K F+C + L H + H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.9 bits (56), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 322 YKCYICGNRYATQKYLEEHIRLH 344
+KC C ++ KYL +H R+H
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.6 bits (55), Expect = 4.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 235 SSERFKCDLCGKVTPYYQHYLRHMRIH 261
+ FKC+ C K ++ +H RIH
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 24.8 bits (53), Expect = 7.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSH 207
+KC +C K ++ + L QH H
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 36.4 bits (83), Expect = 0.017
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSH 207
+ S + G Y+C C +L H+ SH
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.4 bits (78), Expect = 0.060
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 272 CAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
+ + + + + YQC +C S L+ H+ H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.1 bits (77), Expect = 0.076
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 287 QRHEEPNKYQCAMCKKQYASKKMLEKHIRRH-EGQDYKCYICGNRYATQKYLEEHIRLH 344
+ + + G Y+C++C + L+ H+ H
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.5 bits (73), Expect = 0.24
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSE 237
+ C C+ L H+ H
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 32.1 bits (72), Expect = 0.32
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEG 182
++C +CS S L H
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 31.4 bits (70), Expect = 0.59
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 232 QKHSSERFKCDLCGKVTPYYQHYLRHMRIH 261
S ++C +C V H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.8 bits (66), Expect = 1.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 267 HECNLCAKLFACKRSLQDHMQRH 289
++C++C+ + L H+ H
Sbjct: 181 YQCHVCSAVLFSPLDLDAHVASH 203
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 33.8 bits (77), Expect = 0.040
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 13/96 (13%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGIFFICFH 216
F C +C + +S + H Y CK C + M +
Sbjct: 35 FLCMVCKKNLDSTTV------AVHGDEIY-CKSCYGKKYGPKGKGKGMGAGTLSTDKGES 87
Query: 217 CNKNFTHRALLVRHMQKHSSERF------KCDLCGK 246
+ S C CG+
Sbjct: 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQ 123
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.1 bits (72), Expect = 0.058
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 173 QQHKKHDHEGVKYKCKECGKC-YTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRH- 230
+Q + C C LK+HM + K F C HC K A + H
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHV 82
Query: 231 MQKHSS 236
M H+S
Sbjct: 83 MANHNS 88
Score = 27.9 bits (61), Expect = 1.6
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 291 EPNKYQCAMCKK-QYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEHIR 342
+ C C+ + + L+KH+ + + + C+ CG + + ++ H+
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVM 83
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 30.3 bits (69), Expect = 0.076
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 230 HMQKHSSER-FKCD--LCGKVTPYYQHYLRHMRIHQGLEVHECN 270
+ E+ F C CG RH R H G++ +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.085
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 257 HMRIHQGLEVHECN--LCAKLFACKRSLQDHMQRHEEPNKYQCA 298
G + C C F+ L H + H +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 28.8 bits (65), Expect = 0.31
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 212 FICFH--CNKNFTHRALLVRHMQKHSSER-FKCD 242
F C C F+ L RH + HS +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 27.7 bits (62), Expect = 0.66
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 180 HEGVK-YKCKE--CGKCYTQNTNLKQHMLSHKGI 210
G K + C CG ++++ L +H SH G+
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
Score = 25.7 bits (57), Expect = 3.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 313 HIRRHEGQD-YKC--YICGNRYATQKYLEEHIRLHQGHT-YMCNA 353
G+ + C CG R++ L H R H G ++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 29.6 bits (67), Expect = 0.11
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 180 HEGVK-YKCKECGKCYTQNTNLKQHMLSH 207
G+K ++C +C + ++++ +L H H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.2 bits (66), Expect = 0.16
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 257 HMRIHQGLEVHECNLCAKLFACKRSLQDHMQRH 289
R G++ +C C + F+ L H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.37
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 285 HMQRHEEPNKYQCAMCKKQYASKKMLEKHIRRH 317
+ +QC C + ++ L H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 28.1 bits (63), Expect = 0.42
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 230 HMQKHSSER-FKCDLCGKVTPYYQHYLRHMRIH 261
+ + + F+C C + H H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 2.1
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 313 HIRRHEGQD-YKCYICGNRYATQKYLEEHIRLH 344
R G ++C C ++ +L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.4 bits (56), Expect = 3.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKK 177
F+C C R+F+ +L H+K
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRK 32
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.13
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 15 SERIKKERESFLIQVEEYSASDTDSDLDDKIFLSPTRKPKCSVKIKKEDTDVDIFFRSRR 74
E I+K RE +++E LD K +K D++ + + +
Sbjct: 84 PESIRKWREEQRKRLQE---------LDAA------SKVMEQEWREKAKKDLEEWNQRQS 128
Query: 75 Q 75
+
Sbjct: 129 E 129
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (69), Expect = 0.14
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 281 SLQDHMQR-HEEPNKYQCAMCKKQYASKKMLEKHIR 315
L+ HM+ + + +C C+KQ+ SK L H
Sbjct: 40 GLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 28.0 bits (61), Expect = 1.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 173 QQHKKHDHEGVKYKCKECGKCYTQN-TNLKQHMLS-HKGI-FFICFHCNKNFTHRALLVR 229
+Q ++ HE + C C + LK+HM K C HC K F +A L
Sbjct: 13 EQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNY 72
Query: 230 H-MQKHSSE 237
H M +HS++
Sbjct: 73 HTMAEHSAK 81
Score = 27.2 bits (59), Expect = 2.8
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 230 HMQKHSSERFKCDLCGKVT-PYYQHYLRHMRI-HQGLEVHECNLCAKLFACKRSLQDH-M 286
H C C VT +HM + + + +C C K F K L H M
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 287 QRHE 290
H
Sbjct: 76 AEHS 79
Score = 26.4 bits (57), Expect = 6.6
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 156 RFKCDLCSR-TFNSQSYLQQHKKHDHEGV-KYKCKECGKCYTQNTNLKQHMLS 206
C C+ T + L++H + + KC+ C K + L H ++
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 31.5 bits (70), Expect = 0.15
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 159 CDLCSRTFNSQSYLQQH---KKHDHEGVKYKCKECGKCYTQNTNLKQHMLSHKGI---FF 212
C +CS S+S H +KH ++ +Y G+ K
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 213 ICFHCNKNFTHRALLVRHMQ 232
C CN F+ + H
Sbjct: 95 CCPVCNMTFSSPVVAESHYI 114
Score = 27.6 bits (60), Expect = 3.6
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Query: 159 CDLCSRTFNSQSYLQQH---KKH 178
C +C+ TF+S + H K H
Sbjct: 96 CPVCNMTFSSPVVAESHYIGKTH 118
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 32.1 bits (72), Expect = 0.23
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 253 HYLRHMRIHQGLE--VHECNLCAKLFACKRSLQDHMQRHEEPNKYQCAMCKKQYASKKML 310
++ I G V K H + Q ++ + + L
Sbjct: 165 YFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDL 224
Query: 311 EKHIRRH 317
I
Sbjct: 225 RGPIHLS 231
Score = 31.3 bits (70), Expect = 0.39
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 7/48 (14%)
Query: 145 TRFHLLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGK 192
T L R + + + ++ L+ + GK
Sbjct: 197 TIHRNLARGEKRLQREKSEQVLDNPEDLRGP-------IHLSVLRQGK 237
Score = 29.0 bits (64), Expect = 2.0
Identities = 4/46 (8%), Positives = 16/46 (34%)
Query: 159 CDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHM 204
+ + +S S H+ + + ++ + +L+ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 29.8 bits (66), Expect = 0.23
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 181 EGVKYKCKECGKCYTQNTNLKQHMLSH 207
E C CGK +T L+QH H
Sbjct: 10 EAGILPCGLCGKVFTDANRLRQHEAQH 36
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 32.3 bits (73), Expect = 0.25
Identities = 30/235 (12%), Positives = 62/235 (26%), Gaps = 27/235 (11%)
Query: 126 LGTQ-FQCNVCFLMLNNRCYTRFHLLKHNWVRFKCDLCSRTFNSQSYLQQHKKHDHEGVK 184
G Q FQC VC +++ RC H +V F C + S +HK H
Sbjct: 61 FGKQGFQCQVCSFVVHKRC--------HEFVTFSCPGADKGPASDDPRSKHKFKIHTYSS 112
Query: 185 ------------------YKCKECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRAL 226
KC C + + L
Sbjct: 113 PTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRE 172
Query: 227 LVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHM 286
++ + + + D G PY + L + + + + + + +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 287 QRHEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYATQKYLEEHI 341
+ ++ + + S+ + + K + G + E+
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYF 287
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.27
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 289 HEEPNKYQCAMCKKQYASKKMLEKHIRRHEGQDYK 323
Y C +C ++ K + H+R H+G K
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 26.0 bits (56), Expect = 2.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
Y C CG + + + H+ SH G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.0 bits (56), Expect = 2.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
Y C +CG R+ + + H+R H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.33
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSHKG 209
++C+ECG+ + Q +L +H + H G
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMG 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.36
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 212 FICFHCNKNFTHRALLVRHMQK 233
+ C CN+ FT R LL+RH QK
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQK 24
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.45
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 250 YYQHYLRHMRIHQGLEVHECNLCAKLFACKRSLQDHMQ-RHEEPNK---YQCAMCKKQYA 305
+ H+ + + + +EC C H+ H Y C C
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 306 SKKMLEKHIRRHE 318
L +H ++
Sbjct: 62 RYDALSEHNLKYH 74
Score = 29.0 bits (64), Expect = 0.71
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 170 SYLQQHKKHDHEGVKYKCKECGKCYTQNTNLKQHMLS-----HKGIFFICFHCNKNFTHR 224
+ ++++ Y+CK C H+ S ++C CN
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 225 ALLVRHMQKH 234
L H K+
Sbjct: 64 DALSEHNLKY 73
Score = 28.6 bits (63), Expect = 0.99
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 223 HRALLVRHMQKHSSERFKCDLCGKVTPYYQHYLRHMRI-HQGLE---VHECNLCAKLFAC 278
H K ++C C TP + H+ H + + C C L
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 279 KRSLQDHMQRHE 290
+L +H ++
Sbjct: 63 YDALSEHNLKYH 74
Score = 28.2 bits (62), Expect = 1.7
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDHEGVK----YKCKECGKCYTQNTNLKQHMLSH 207
++C C+ + H +H V Y C EC + L +H L +
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKY 73
Score = 27.4 bits (60), Expect = 2.8
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 285 HMQRHEEPNKYQCAMCKKQYASKKMLEKHIRR-----HEGQDYKCYICGNRYATQKYLEE 339
+ Q + Y+C C Q M H+ Y C C L E
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 340 HI-RLHQGHT 348
H + H G
Sbjct: 69 HNLKYHPGEE 78
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 0.57
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 156 RFKCDLCSRTFNSQSYLQQHKKHDH 180
+ C++C+ F++ S L +H + DH
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 0.63
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 292 PNKYQCAMCKKQYASKKMLEKHIRR 316
P+ Y C +C ++++ L +H+R
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRS 138
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.75
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 186 KCKECGKCYTQNTNLKQHMLSHKG 209
+C+ECGK + ++ L +H H G
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAG 37
Score = 27.2 bits (59), Expect = 1.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 214 CFHCNKNFTHRALLVRHMQKHSSE 237
C C K F H +LL+ H H+ E
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 27.0 bits (59), Expect = 0.91
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ 320
Y C C++Q+A L++H+R H G+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 25.5 bits (55), Expect = 3.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
++C HC + F L RH++ H+ E+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 182 GVKYKCKECGKCYTQNTNLKQHMLSHKG 209
G YKC +C NL H+ H G
Sbjct: 7 GKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 26.3 bits (57), Expect = 1.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEGQ 320
Y+C C A K L H+R+H G+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 25.2 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 319 GQDYKCYICGNRYATQKYLEEHIRLHQG 346
G+ YKC C A + L H+R H G
Sbjct: 7 GKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 24.8 bits (53), Expect = 7.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 208 KGIFFICFHCNKNFTHRALLVRHMQKHSSER 238
G + C C+ +A L H++KH+ E+
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.5 bits (59), Expect = 1.4
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 184 KYKC--KECGKCYTQNTNLKQHMLSHKG 209
++ C + CGK Y + ++L+ H+ H G
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 26.8 bits (58), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 152 HNWVRFKCDLCSRTFNSQSYLQQHKK 177
H R++C C TFN + +L QH+K
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQK 33
Score = 24.5 bits (52), Expect = 9.3
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 234 HSSERFKCDLCGKVTPYYQHYLRHMRIHQG 263
H+ +R++C C +H ++H + H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTHAA 37
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 322 YKCYICGNRYATQKYLEEHIRLHQG 346
Y C +CG R++ + +E H R+H G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 4.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEG 319
Y C++C K+++ K +E H R H G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.0 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 212 FICFH--CNKNFTHRALLVRHMQKHSSER 238
F C C K F R + H+Q H +R
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.6 bits (56), Expect = 4.8
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 184 KYKC--KECGKCYTQNTNLKQHMLSH 207
++C C K + + N++ H+ +H
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTH 43
>3lyr_A Transcription factor COE1; immunoglobulin (IG)-like domain,
structural genomics, struct genomics consortium, SGC,
activator, developmental protein; 2.51A {Homo sapiens}
Length = 243
Score = 28.3 bits (62), Expect = 3.5
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 140 NNRCYTRFHLLKHNWVRFKCDLCSRTFNSQS-----YLQQHKKHD-------HEGVKYKC 187
NN + R LL N +R + D R +S + Y Q K + HE + +C
Sbjct: 98 NNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRC 157
Query: 188 KECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKV 247
+ C +N ++ + CN+N A RF+ + V
Sbjct: 158 CDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNA-----GNPRDMRRFQVVVSTTV 212
Query: 248 T 248
Sbjct: 213 N 213
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 28.4 bits (64), Expect = 3.8
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 24/63 (38%)
Query: 181 EGVKYKCKECGKCYTQNTNLKQHMLSHKGI---FFICFHCNKNFTHRALLVRHMQKHSSE 237
EGV KC CG+ +L + +C C+ H HM+ +
Sbjct: 21 EGVWTKCDSCGQ-----------VLYRAELERNLEVCPKCD----H------HMRMTARN 59
Query: 238 RFK 240
R
Sbjct: 60 RLH 62
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.5 bits (55), Expect = 3.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 294 KYQCAMCKKQYASKKMLEKHIR-RHEGQD 321
K C CKK+Y+ K L KHIR H+ QD
Sbjct: 9 KQHCRFCKKKYSDVKNLIKHIRDAHDPQD 37
>2czr_A TBP-interacting protein; tata-binding protein (TBP),
hyperthermophilic archaeon, Zn-finger motif,
transcription; 2.30A {Thermococcus kodakarensis} SCOP:
c.52.4.1
Length = 226
Score = 28.1 bits (62), Expect = 4.2
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 185 YKCKECGKCYTQNTNLKQHMLSH 207
YKC+ECGK Y NL+ H+ H
Sbjct: 155 YKCEECGK-YVDIENLEAHLREH 176
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.0 bits (55), Expect = 4.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
F+C C + F + L RH + H++E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 5.6
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 239 FKCDLCGKVTPYYQHYLRHMRIHQG 263
F C++C + +H RH R H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 25.2 bits (55), Expect = 4.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 294 KYQCAMCKKQYASKKMLEKHIRRHEGQ 320
K+ C C K++ L HI HE +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 4.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 213 ICFHCNKNFTHRALLVRHMQKHSSER 238
C C K FT + L+ H+++H+ E+
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase;
1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB:
1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A
2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A
1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Length = 164
Score = 27.4 bits (60), Expect = 5.1
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 310 LEKHIRRHEGQDYKCYICGNRYAT 333
+ + +R EG K Y Y T
Sbjct: 3 IFEMLRIDEGLRLKIYKDTEGYYT 26
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.9 bits (54), Expect = 5.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 294 KYQCAMCKKQYASKKMLEKHIRRHEGQ 320
K+ C C K++ L KHI HE
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELL 28
>3mln_A Transcription factor COE1; transcription factor, pseudo-IG-fold,
Zn-finger, Zn-knuckle; HET: DNA; 2.40A {Mus musculus}
PDB: 3mlo_A*
Length = 224
Score = 27.5 bits (60), Expect = 5.4
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 140 NNRCYTRFHLLKHNWVRFKCDLCSRTFNSQS-----YLQQHKKHD-------HEGVKYKC 187
NN + R LL N +R + D R +S + Y Q K + HE + +C
Sbjct: 82 NNGIHYRLQLLYSNGIRTEQDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRC 141
Query: 188 KECGKCYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSERFKCDLCGKV 247
+ C +N ++ + CN+N A RF+ + V
Sbjct: 142 CDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNA-----GNPRDMRRFQVVVSTTV 196
Query: 248 T 248
Sbjct: 197 N 197
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 5.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 212 FICFHCNKNFTHRALLVRHMQKHSSER 238
F C +CNK F + L H++ H++E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 24.8 bits (53), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 295 YQCAMCKKQYASKKMLEKHIRRHEG 319
Y CA+C K++ S L HIR G
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHG 32
>4epi_A Pesticin, lysozyme chimera; bacterial toxin, toxin, hydrolase;
1.74A {Yersinia pestis} PDB: 4exm_A 4arj_A
Length = 330
Score = 27.6 bits (60), Expect = 6.3
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 293 NKYQCAMCKKQYASKKMLEKHIRRHEGQDYKCYICGNRYAT 333
N Q ++ + E +R EG K Y Y T
Sbjct: 153 NISQLKEFLRRSVNIVCFE-MLRCDEGLRLKIYKDTEGYYT 192
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 27.6 bits (61), Expect = 6.5
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 279 KRSLQDHMQRHEEP------NKYQCAMCKKQYASKKM 309
K+++ + + NKY Q A K +
Sbjct: 319 KKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGV 355
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 24.7 bits (54), Expect = 8.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 266 VHECNLCAKLFACKRSLQDHMQRH 289
+ C+ C + F ++L HM H
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 25.4 bits (56), Expect = 9.3
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 157 FKCDLCSRTFNSQSYLQQHKKHDHEGVKYKCKECGKCYTQN 197
KC+ C +T S + +HEG Y C CY+
Sbjct: 28 LKCEKCGKTLTSGGH------AEHEGKPY-CNH--PCYSAM 59
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 27.1 bits (61), Expect = 9.9
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 20/61 (32%)
Query: 181 EGVKYKCKECGK-CYTQNTNLKQHMLSHKGIFFICFHCNKNFTHRALLVRHMQKHSSERF 239
G+ KC +C K YT+ L +++ +CF+C+ H H+ + +R
Sbjct: 27 AGIMTKCPKCKKIMYTK--ELAENL-------NVCFNCD----H------HIALTAYKRI 67
Query: 240 K 240
+
Sbjct: 68 E 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.439
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,396,590
Number of extensions: 316765
Number of successful extensions: 3148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 973
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.8 bits)