RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6526
(696 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 163 bits (415), Expect = 4e-46
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 577 RTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDS 636
T TV GWGR E G + L+ VP++SN EC++ + +T NM+CAG +EGGKD+
Sbjct: 122 TTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKDA 181
Query: 637 CQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNN 688
CQGDSGG L+ D +GR ++ G+VSWG GCARPN PGVYTRV+ Y++WIQ
Sbjct: 182 CQGDSGGPLVCND-NGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
Score = 120 bits (302), Expect = 9e-31
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 19 IVGGWTTEVNEYPWVVALE-QAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
IVGG ++ +PW V+L+ G+ FCGG+LIS R+VLTAAHCV SS + + H
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAP-SNYTVRLGSH 59
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + E + +V KV+ HP YN ++D+DIALLKL P+ V P
Sbjct: 60 DL-SSNEGGGQVIKVKKVIVHPNYNPS---TYDNDIALLKLKRPVTLSDNVRP 108
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 150 bits (380), Expect = 2e-41
Identities = 58/110 (52%), Positives = 75/110 (68%), Gaps = 3/110 (2%)
Query: 577 RTGTVVGWGRVEES-GQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKD 635
T TV GWGR E G + L+ VP++SN CR+ +T NM+CAG +EGGKD
Sbjct: 122 TTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKD 181
Query: 636 SCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWI 685
+CQGDSGG L+ DGR+++ G+VSWG GCARP PGVYTRV+ Y++WI
Sbjct: 182 ACQGDSGGPLVCN--DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Score = 121 bits (306), Expect = 3e-31
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 7/114 (6%)
Query: 18 RIVGGWTTEVNEYPWVVALEQAG-KFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISE 76
RIVGG + +PW V+L+ G + FCGG+LIS R+VLTAAHCVR S ++ +
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGS-DPSNIRVRLGS 59
Query: 77 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H+ ++ E Q +V KV+ HP YN ++D+DIALLKL P+ V P
Sbjct: 60 HDLSSGEEGQ--VIKVSKVIIHPNYNPS---TYDNDIALLKLKEPVTLSDNVRP 108
>gnl|CDD|239582 cd03505, Delta9-FADS-like, The Delta9 Fatty Acid Desaturase
(Delta9-FADS)-like CD includes the delta-9 and delta-11
acyl CoA desaturases found in various eukaryotes
including vertebrates, insects, higher plants, and
fungi. The delta-9 acyl-lipid desaturases are found in a
wide range of bacteria. These enzymes play essential
roles in fatty acid metabolism and the regulation of
cell membrane fluidity. Acyl-CoA desaturases are the
enzymes involved in the CoA-bound desaturation of fatty
acids. Mammalian stearoyl-CoA delta-9 desaturase is a
key enzyme in the biosynthesis of monounsaturated fatty
acids, and in yeast, the delta-9 acyl-CoA desaturase
(OLE1) reaction accounts for all de nova unsaturated
fatty acid production in Saccharomyces cerevisiae. These
non-heme, iron-containing, ER membrane-bound enzymes are
part of a three-component enzyme system involving
cytochrome b5, cytochrome b5 reductase, and the delta-9
fatty acid desaturase. This complex catalyzes the NADH-
and oxygen-dependent insertion of a cis double bond
between carbons 9 and 10 of the saturated fatty acyl
substrates, palmitoyl (16:0)-CoA or stearoyl (18:0)-CoA,
yielding the monoenoic products palmitoleic (16:l) or
oleic (18:l) acids, respectively. In cyanobacteria, the
biosynthesis of unsaturated fatty acids is initiated by
delta 9 acyl-lipid desaturase (DesC) which introduces
the first double bond at the delta-9 position of a
saturated fatty acid that has been esterified to a
glycerolipid. This domain family has extensive
hydrophobic regions that would be capable of spanning
the membrane bilayer at least twice. Comparison of
sequences also reveals the existence of three regions of
conserved histidine cluster motifs that contain the
residues: HXXXXH, HXXHH, and H/QXXHH. These histidine
residues are reported to be catalytically essential and
proposed to be the ligands for the iron atoms contained
within the rat stearoyl CoA delta-9 desaturase. Some
eukaryotic (Fungi, Euglenozoa, Mycetozoa, Rhodophyta)
desaturase domains have an adjacent C-terminal
cytochrome b5-like domain.
Length = 178
Score = 120 bits (304), Expect = 1e-31
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 302 NEGLWISFL--ICFVTRLVTVLNGTWNVNSLAHIYGYRPFSKEILPTENWFVSFIGAGEG 359
G W S + + + R+V VL+ TW VNSLAH++GYRP+ NW+V+ + GEG
Sbjct: 78 KRGFWFSHVGWLGGLLRIVLVLHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGEG 137
Query: 360 WHNYHHSFPWDYRAAEMGQHFNITTLVIDFCAERGWAWGLK 400
WHN HH+FP D R + T VI + G AW LK
Sbjct: 138 WHNNHHAFPGDARNGLKWYQIDPTKWVIRLLEKLGLAWDLK 178
Score = 120 bits (304), Expect = 1e-31
Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 454 NEGLWISFL--ICFVTRLVTVLNGTWNVNSLAHIYGYRPFSKEILPTENWFVSFIGAGEG 511
G W S + + + R+V VL+ TW VNSLAH++GYRP+ NW+V+ + GEG
Sbjct: 78 KRGFWFSHVGWLGGLLRIVLVLHATWLVNSLAHMWGYRPYDTRDTSRNNWWVALLTFGEG 137
Query: 512 WHNYHHSFPWDYRAAEMGQHFNITTLVIDFCAERGWAWGLK 552
WHN HH+FP D R + T VI + G AW LK
Sbjct: 138 WHNNHHAFPGDARNGLKWYQIDPTKWVIRLLEKLGLAWDLK 178
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 116 bits (292), Expect = 2e-29
Identities = 54/108 (50%), Positives = 66/108 (61%), Gaps = 9/108 (8%)
Query: 578 TGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSC 637
T TV GWG + G L+ VPV+S + CR G +T NM+CAG GGKD+C
Sbjct: 120 TCTVSGWGNTKTLGL-PDTLQEVTVPVVSRETCRSAYGG--TVTDNMICAGA--GGKDAC 174
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWI 685
QGDSGG L+ D LI G+VSWG GCA N PGVYT V+ Y++WI
Sbjct: 175 QGDSGGPLVCSD---GELI-GIVSWGYGCASGNYPGVYTPVSSYLDWI 218
Score = 93.3 bits (232), Expect = 1e-21
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVALE-QAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
IVGG + +PW V+L+ +GK FCGG+LIS+ +VLTAAHCV ++ K + V+ H
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSNA---KSVRVVLGAH 57
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
N + E + V KV+ HP YN D+DIALLKL +P+ TV P
Sbjct: 58 NI-VLREGGEQKFDVKKVIVHPNYNPDT----DNDIALLKLKSPVTLGDTVRP 105
>gnl|CDD|224316 COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].
Length = 289
Score = 86.3 bits (214), Expect = 1e-18
Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 426 DDNNNEYYKTWFTIFSIGIPTLVPYYFWNEGLWISFLICFVTRLVTVLNGTWNVNSLAHI 485
D + + I +P + Y G W+ + V RLV V + TW VNSL H
Sbjct: 155 LDWQHRNLYLIALLMQIVLPLFIGYAL---GGWLGLIWGGVQRLVLVQHATWCVNSLGHY 211
Query: 486 YGYRPFSKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFNITTLVIDFCAER 545
GYRPF W+V+ + GEGWHN HH+FP R F++T +I +
Sbjct: 212 IGYRPFDCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNGLKWWEFDVTWWIIKLLSLL 271
Query: 546 GWAWGLKAASPA 557
G A +K A A
Sbjct: 272 GLAKVVKLAPKA 283
Score = 85.5 bits (212), Expect = 3e-18
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 280 YYKTWFTIFSIGIPTLVPYYFWNEGLWISFLICFVTRLVTVLNGTWNVNSLAHIYGYRPF 339
+ I +P + Y G W+ + V RLV V + TW VNSL H GYRPF
Sbjct: 161 NLYLIALLMQIVLPLFIGYAL---GGWLGLIWGGVQRLVLVQHATWCVNSLGHYIGYRPF 217
Query: 340 SKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFNITTLVIDFCAERGWAWGL 399
W+V+ + GEGWHN HH+FP R F++T +I + G A +
Sbjct: 218 DCRDTARNCWWVALVTFGEGWHNNHHAFPNSARNGLKWWEFDVTWWIIKLLSLLGLAKVV 277
Query: 400 KAASPA 405
K A A
Sbjct: 278 KLAPKA 283
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 72.2 bits (177), Expect = 2e-13
Identities = 42/118 (35%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 580 TVVGWG--------RVEESGQIASDLRATQVPV---MSNQECRQFPGFEPKLTGNMMCAG 628
T +G R G I ++ VP+ + C LTG CAG
Sbjct: 162 TNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTG--FCAG 219
Query: 629 YVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWI 685
KD+CQGDSGG + + +GR GVVSWG G C PGVYT V++Y +WI
Sbjct: 220 RP--PKDACQGDSGGPIFHKGEEGRVQR-GVVSWGDGGCGGTLIPGVYTNVSNYQDWI 274
Score = 56.4 bits (136), Expect = 3e-08
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 17 DRIVGGWTTEVNEYPWVVAL-EQAGKF----FCGGTLISDRYVLTAAHCVRSSKRHK-DL 70
RI+GG EYP +VAL ++ + FCGG+ + RYVLTAAHC +S D+
Sbjct: 31 SRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDV 90
Query: 71 IAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
V+ + N +Q E V + H Y+ + +DIA+L+L P V
Sbjct: 91 NRVVVDLND----SSQAERGHVRTIYVHEFYSPG---NLGNDIAVLELARAASL-PRVKI 142
Query: 131 DNKDDPKSELT 141
+ D + L
Sbjct: 143 TSFDASDTFLN 153
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 25 TEVNEYPW--VVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
T+ ++P+ VV E A G+ TLI VLTA HC+ S +D IA
Sbjct: 44 TDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAA 96
>gnl|CDD|177866 PLN02220, PLN02220, delta-9 acyl-lipid desaturase.
Length = 299
Score = 46.7 bits (111), Expect = 2e-05
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 322 NGTWNVNSLAHIYGYRPFSKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFN 381
+ TW +NS HI+G R + + W++S GE WHN HH+F R +
Sbjct: 207 HVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQGLEWWQID 266
Query: 382 ITTLVIDFCAERGWAWGLKAASPAMVKYRATKR 414
IT +I F G A +K + A + A R
Sbjct: 267 ITWYLIRFFEVLGLATDVKLPTEAQKRKMAIVR 299
Score = 46.7 bits (111), Expect = 2e-05
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 474 NGTWNVNSLAHIYGYRPFSKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFN 533
+ TW +NS HI+G R + + W++S GE WHN HH+F R +
Sbjct: 207 HVTWLINSACHIWGSRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFESSARQGLEWWQID 266
Query: 534 ITTLVIDFCAERGWAWGLKAASPAMVKYRATKR 566
IT +I F G A +K + A + A R
Sbjct: 267 ITWYLIRFFEVLGLATDVKLPTEAQKRKMAIVR 299
>gnl|CDD|238511 cd01060, Membrane-FADS-like, The membrane fatty acid desaturase
(Membrane_FADS)-like CD includes membrane FADSs, alkane
hydroxylases, beta carotene ketolases (CrtW-like),
hydroxylases (CrtR-like), and other related proteins.
They are present in all groups of organisms with the
exception of archaea. Membrane FADSs are non-heme,
iron-containing, oxygen-dependent enzymes involved in
regioselective introduction of double bonds in fatty
acyl aliphatic chains. They play an important role in
the maintenance of the proper structure and functioning
of biological membranes. Alkane hydroxylases are
bacterial, integral-membrane di-iron enzymes that share
a requirement for iron and oxygen for activity similar
to that of membrane FADSs, and are involved in the
initial oxidation of inactivated alkanes. Beta-carotene
ketolase and beta-carotene hydroxylase are carotenoid
biosynthetic enzymes for astaxanthin and zeaxanthin,
respectively. This superfamily domain has extensive
hydrophobic regions that would be capable of spanning
the membrane bilayer at least twice. Comparison of these
sequences also reveals three regions of conserved
histidine cluster motifs that contain eight histidine
residues: HXXX(X)H, HXX(X)HH, and HXXHH (an additional
conserved histidine residue is seen between clusters 2
and 3). Spectroscopic and genetic evidence point to a
nitrogen-rich coordination environment located in the
cytoplasm with as many as eight histidines coordinating
the two iron ions and a carboxylate residue bridging the
two metals in the Pseudomonas oleovorans alkane
hydroxylase (AlkB). In addition, the eight histidine
residues are reported to be catalytically essential and
proposed to be the ligands for the iron atoms contained
within the rat stearoyl CoA delta-9 desaturase.
Length = 122
Score = 44.0 bits (104), Expect = 3e-05
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 325 WNVNSLAHIYGYRPFSKE-------ILPTENWFVSFIGAGEGWHNYHHSFP 368
VN L H G RPF + W + G G+HN HH FP
Sbjct: 72 SAVNYLEHYGGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122
Score = 44.0 bits (104), Expect = 3e-05
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 477 WNVNSLAHIYGYRPFSKE-------ILPTENWFVSFIGAGEGWHNYHHSFP 520
VN L H G RPF + W + G G+HN HH FP
Sbjct: 72 SAVNYLEHYGGDRPFDTDGEWLRTTDNSRNGWLNLLLTGGLGYHNEHHLFP 122
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 35.6 bits (82), Expect = 0.023
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 46 GTLIS-DRYVLTAAHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQ 104
G ++ D +LT AH V + + I V+ + + VV
Sbjct: 3 GFVVGSDGLILTNAHVVEDADASE--IEVV-------LPDGGRVPAEVVAA--------- 44
Query: 105 GAKSHDHDIALLKLDAPLEFKPTVSPD 131
D D+ALLK+D PL +
Sbjct: 45 ---DPDLDLALLKVDGPLLPAAPLLAS 68
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of
growth rate and is also involved in nematode larval
development.
Length = 280
Score = 36.6 bits (85), Expect = 0.028
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 5 LKIAGCGVPNRMDRIVGGWTTEVNEYPWVVALE----QAGKFFCGGTLISDRYVLTAAHC 60
L G + + G E +EYPW+V + T IS R++LT++
Sbjct: 28 LSSCGNKTLPLPSQNINGIYLEKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSRL 87
Query: 61 VRSSKR 66
+ K
Sbjct: 88 FLNGKM 93
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase.
Length = 251
Score = 36.5 bits (84), Expect = 0.034
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 13/139 (9%)
Query: 242 YKWDIVWFNLIGFAVLHLATLYGYYLMFTGEVKFATLLYYKTWFTI---FSIGIPTLVPY 298
Y L L + L+F + L + F I + + +
Sbjct: 85 YALRRRLLGLGRLLYRFLLGVLLGLLVFLFRFRRRRLRKRRRRFRIRLLLLLALLLALAL 144
Query: 299 YFWNEGLWISFLICFVTRLVTVLNGTWNVNSLAHIY-------GYRPFSKEILPT--ENW 349
G W + L+ + L+ + VN L H R + + L T +W
Sbjct: 145 LLAGLGGWGALLLFLLPLLLALTLLLL-VNYLEHYGLDTEPERAARTWYERQLVTTSNSW 203
Query: 350 FVSFIGAGEGWHNYHHSFP 368
++++ +H HH FP
Sbjct: 204 VLNWLTGNLNYHIEHHLFP 222
Score = 31.9 bits (72), Expect = 1.0
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 447 LVPYYFWNEGLWISFLICFVTRLVTVLNGTWNVNSLAHIY-------GYRPFSKEILPT- 498
+ G W + L+ + L+ + VN L H R + + L T
Sbjct: 141 ALALLLAGLGGWGALLLFLLPLLLALTLLLL-VNYLEHYGLDTEPERAARTWYERQLVTT 199
Query: 499 -ENWFVSFIGAGEGWHNYHHSFP 520
+W ++++ +H HH FP
Sbjct: 200 SNSWVLNWLTGNLNYHIEHHLFP 222
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 31.9 bits (72), Expect = 0.92
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 29 EYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVR-SSKRHKDLIAVISEHNRATVYETQI 87
+PW+ + G + C G LI +VL + C+ +S H + V+ H +
Sbjct: 15 HWPWIAKVYVEGNYRCTGVLIDLSWVLVSHSCLWDTSLEHSYISVVLGGHKTLKSVKGPY 74
Query: 88 ETRRVVKV-LTHPKYNAQGAKSHDHDIALLKLDAPLEF----KPTVSPDNKDDPKSE--- 139
E ++ +V ++ I+LL L +P F PT P ++ +
Sbjct: 75 E--QIYRVDCRKDLPRSK--------ISLLHLKSPATFSNHVLPTFVPSTRNHNEKNNKC 124
Query: 140 --LTQFKPGNQKS 150
+ Q G K+
Sbjct: 125 VTVGQDDTGRNKT 137
>gnl|CDD|236559 PRK09548, PRK09548, PTS system ascorbate-specific transporter
subunits IICB; Provisional.
Length = 602
Score = 31.6 bits (72), Expect = 1.5
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 260 ATLYGYYLMFTGEVKFATLLYYKTWFTIFSIG----IPTLVPYYFWNE----------GL 305
A ++G+ G+ +L I IP +P +F N G
Sbjct: 325 AVVFGFMWGAIGQFLAVGILIAFNLKGIDVDAPIIIIPGFIPMFFSNATIGVFANHFGGW 384
Query: 306 WISFLICFVTRLVTVLNGTWNVNSLAHI 333
ICFV ++ VL W + +A+I
Sbjct: 385 KAVMKICFVMGIIEVLGSAWVIQLIANI 412
Score = 30.5 bits (69), Expect = 3.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 444 IPTLVPYYFWNE----------GLWISFLICFVTRLVTVLNGTWNVNSLAHI 485
IP +P +F N G ICFV ++ VL W + +A+I
Sbjct: 361 IPGFIPMFFSNATIGVFANHFGGWKAVMKICFVMGIIEVLGSAWVIQLIANI 412
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense
mechanisms].
Length = 455
Score = 31.0 bits (71), Expect = 2.5
Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 246 IVWFNLIGFAVLHLATLYGYYLMFTGEVKFATLLYYKTWFTIFSIGIP---TLVPYYFWN 302
++ + + + L G+ K ++ + + + +P L ++
Sbjct: 362 LLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFII---SLLSYWGFRLPLAYLLGFFFLGL 418
Query: 303 EGLWISFLICFVTRLVTVL 321
G+WI F + + R + +L
Sbjct: 419 AGVWIGFPLSLILRAILLL 437
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 29.7 bits (67), Expect = 6.0
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 246 IVWFNLIGFAVLHLATLYGYYLMFTGEVKFATLLYYKTWFTIFSIGIPTLVPYYFWNEGL 305
+ L+GF++L + L L+F +F L +F + I L+
Sbjct: 214 TIISRLLGFSILWILGLLFLSLLFF--RRFGVLFSL-----LFFLMISILLSL------- 259
Query: 306 WISFLICFVTRLVTVLNG 323
IS L+ L ++ G
Sbjct: 260 -ISLLLLSRLSLANLIKG 276
>gnl|CDD|223472 COG0395, UgpE, ABC-type sugar transport system, permease component
[Carbohydrate transport and metabolism].
Length = 281
Score = 29.5 bits (67), Expect = 6.3
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 246 IVWFNLIGFAVLHLATLYGYYLMFTGEVKFATLLYYKTWFTIFSIGIPTLVPY-YFWNEG 304
+++ LI A+L L+ Y M K + ++ +++ TL Y ++ G
Sbjct: 13 LLYLLLILVALL---FLFPLYWMILTSFKPSAEIFSGPPPSLWP-SSFTLENYRTVFSGG 68
Query: 305 ------LWISFLICFVTRLVTVL 321
S ++ + ++++L
Sbjct: 69 PGFLRYFLNSLIVAVGSTVLSLL 91
>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit.
The 20S proteasome, multisubunit proteolytic complex, is
the central enzyme of nonlysosomal protein degradation
in both the cytosol and nucleus. It is composed of 28
subunits arranged as four homoheptameric rings that
stack on top of one another forming an elongated
alpha-beta-beta-alpha cylinder with a central cavity.
The proteasome alpha and beta subunits are members of
the N-terminal nucleophile (Ntn)-hydrolase superfamily.
Their N-terminal threonine residues are exposed as a
nucleophile in peptide bond hydrolysis. Mammals have 7
alpha and 7 beta proteasome subunits while archaea have
one of each.
Length = 189
Score = 28.7 bits (65), Expect = 7.5
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 593 IASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAG 628
+ +D RAT+ P+++++ C + + N+ C G
Sbjct: 14 LGADTRATEGPIVADKNCEKI----HYIAPNIYCCG 45
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.461
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,950,953
Number of extensions: 3509639
Number of successful extensions: 3045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3022
Number of HSP's successfully gapped: 57
Length of query: 696
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 592
Effective length of database: 6,324,786
Effective search space: 3744273312
Effective search space used: 3744273312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)