RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6526
(696 letters)
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 180 bits (458), Expect = 2e-52
Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNM 624
R + +++TG V G+GR E G+ ++ L+ +VP + C+ +T NM
Sbjct: 112 RDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF---IITQNM 168
Query: 625 MCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEW 684
CAGY +D+CQGDSGG + + + G+VSWG GCAR G+YT+V +++W
Sbjct: 169 FCAGYDTKQEDACQGDSGGPHVTRF-KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKW 227
Query: 685 IQNNTRDACFC 695
I + +
Sbjct: 228 IDRSMKTRGLP 238
Score = 133 bits (337), Expect = 2e-35
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
IVGG + E PW L + FCGGT++S+ Y+LTAAHC+ +KR + +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR---FKVRVGDR 57
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
N E V V+ H ++ + ++D DIA+L+L P+ F+ V+P
Sbjct: 58 NT-EQEEGGEAVHEVEVVIKHNRFTKE---TYDFDIAVLRLKTPITFRMNVAP 106
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 179 bits (456), Expect = 3e-52
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGY 629
+ Y++ T TV GWG E G L VP +S+ CR F + M+CAGY
Sbjct: 103 TTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFI-LVANEMICAGY 161
Query: 630 VEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNT 689
+D+CQGDSGG + +D ++ G+VSWG GCAR GVYT V+ + I +
Sbjct: 162 DTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAA 221
Query: 690 R 690
R
Sbjct: 222 R 222
Score = 125 bits (317), Expect = 5e-33
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
+VGG E+P++V L CGG L + VLTAAHCV S + + A +
Sbjct: 1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSPDNKDDP 136
+ R KVL P + +++ D AL+KL P+ PT+
Sbjct: 57 LQSSSAV---KVRSTKVLQAPGFT---KETYGKDWALIKLAQPINQ-PTLKIATTTAY 107
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 175 bits (447), Expect = 9e-51
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
+ ++ +G V GWGRV G+ A L+ +VP++ C + F +T NM CA
Sbjct: 114 EYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF--TITNNMFCA 171
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G+ EGG+DSCQGDSGG + E +G + G++SWG CA G+YT+V+ Y+ WI+
Sbjct: 172 GFHEGGRDSCQGDSGGPHVTEV-EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKE 230
Query: 688 NTRD 691
T+
Sbjct: 231 KTKL 234
Score = 137 bits (348), Expect = 5e-37
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
+VGG + ++PW V L FCGG+++++++++TAAHCV + + V EHN
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT---VVAGEHN 57
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E + R V++++ H +NA +++HDIALL+LD PL V+P
Sbjct: 58 I-EETEHTEQKRNVIRIIPHHNFNA-AINTYNHDIALLELDEPLVLNSYVTP 107
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 175 bits (446), Expect = 9e-51
Identities = 48/122 (39%), Positives = 68/122 (55%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
D S+ V G+G ++ G + LR QV ++ C + + +T M+CA
Sbjct: 109 DASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCA 168
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G +EG D+CQGDSGG L+ D + +AG+VSWG CA+PN PGVYTRV +WI +
Sbjct: 169 GSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITS 228
Query: 688 NT 689
T
Sbjct: 229 KT 230
Score = 122 bits (309), Expect = 7e-32
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG E E+PW +L+ G CG TLI+ ++++AAHC + K A
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + R + +++ H KY SHD+DI+L +L +P+ + V
Sbjct: 61 KPSK-----MKRGLRRIIVHEKYK---HPSHDYDISLAELSSPVPYTNAVHR 104
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 175 bits (447), Expect = 1e-50
Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ---FPGFEPKLTG 622
R + R V GWG++ + G A +L VP + Q+C Q G P +T
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 623 NMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYM 682
M CAGY +G KDSC+GDSGG G + + G+VSWG GCA GVYTRV+ Y+
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHY-RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYI 232
Query: 683 EWIQNNTR 690
EW+Q R
Sbjct: 233 EWLQKLMR 240
Score = 136 bits (345), Expect = 2e-36
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG E PW V L G CGGTLI+ +V++AAHC K ++LIAV+ EH+
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ ++ ++RRV +V+ Y + +HDIALL+L P+ V P
Sbjct: 61 L-SEHDGDEQSRRVAQVIIPSTYVPG---TTNHDIALLRLHQPVVLTDHVVP 108
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 175 bits (447), Expect = 3e-50
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAG 628
+ V + TVVGWGR E GQ ++ + VPV+ ++C + F ++ + +CAG
Sbjct: 158 NEEVQVGQRLTVVGWGRTET-GQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAG 216
Query: 629 YVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNN 688
E KDSC GDSGG LL E + +F + G+VS+G C PG+YT+V Y +WI+ N
Sbjct: 217 G-EKAKDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGN 275
Query: 689 TR 690
R
Sbjct: 276 IR 277
Score = 140 bits (355), Expect = 1e-37
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 3 PDLKIAGCGVPNRMDRIVGGWTTEVNEYPWVVALE-----QAGKFFCGGTLISDRYVLTA 57
P+L CG D+I+ G T E+PW + +F CGG+LI++RY++TA
Sbjct: 7 PELLPNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTA 66
Query: 58 AHCVRSSK--RHKDLIAV-ISEHNRATVYETQIE----------TRRVVKVLTHPKYNAQ 104
AHCV L V + E N AT + + + + HP Y
Sbjct: 67 AHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD- 125
Query: 105 GAKSHDHDIALLKLDAPLEFKPTVSP 130
G+K HDIAL++L+ +EF + P
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNYIRP 151
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 173 bits (441), Expect = 6e-50
Identities = 53/122 (43%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
D SH + + V GWG + G A L+ ++ V++ C ++T MMC
Sbjct: 120 DASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL--LPQQITPRMMCV 177
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G++ GG DSCQGDSGG L + DGR AGVVSWG GCA+ N PGVYTR+ + +WI+
Sbjct: 178 GFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKE 237
Query: 688 NT 689
NT
Sbjct: 238 NT 239
Score = 123 bits (312), Expect = 4e-32
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 9/118 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKF-FCGGTLISDRYVLTAAHCVRSSKRHK-----DLIA 72
+VGG + E+PW V+L G+ CG +LIS ++++AAHC + + A
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 73 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ H+++ ++ RR+ ++++HP +N + D+DIALL+L+ P E+ V P
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDF---TFDYDIALLELEKPAEYSSMVRP 115
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 170 bits (432), Expect = 1e-48
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
+ + R ++ GWG V G A L+ VP++SN+ C+Q E +T NM+CA
Sbjct: 115 EENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMP-EYNITENMICA 173
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
GY EGG DSCQGDSGG L+ ++ + R+ +AGV S+G CA PN PGVY RV+ + EWIQ+
Sbjct: 174 GYEEGGIDSCQGDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQS 232
Query: 688 N 688
Sbjct: 233 F 233
Score = 131 bits (331), Expect = 1e-34
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCV-RSSKRHKDLIAVISEH 77
IVGG + +PWVV L + CG +L+S ++++AAHCV + A++ H
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
++ + Q R + +++ +P YN + D+DIA++ L+ + + + P
Sbjct: 61 MKSNLTSPQTVPRLIDEIVINPHYNRR---RKDNDIAMMHLEFKVNYTDYIQP 110
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 169 bits (431), Expect = 2e-48
Identities = 53/110 (48%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
V GWG E G L+ VP++S+++CR G ++ +M+CAG EGGKDSCQG
Sbjct: 129 IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYG-ADEILDSMICAGVPEGGKDSCQG 187
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNT 689
DSGG L D G +AG+VSWG GCARP PGVYT V+++++WI+ N
Sbjct: 188 DSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA 236
Score = 126 bits (319), Expect = 4e-33
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHK--DLIA 72
IVGG + E+P+ ++ FCG ++ ++ Y +TA HCV L
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 73 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
V E + +V E + V K++ H ++ D+DI+LLKL L F V+P
Sbjct: 61 VAGELDM-SVNEGSEQIITVSKIILHENFD---YNLLDNDISLLKLSGSLTFNDNVAP 114
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 168 bits (427), Expect = 5e-48
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ----FPGFEPKLTGN 623
+ + + GT GWG + G +A +L +P++ +Q+C P +T N
Sbjct: 113 EAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTAN 171
Query: 624 MMCAGYVEGGKDSCQGDSGGALLMED-LDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHY 681
M+CAG GGKDSC+GDSGGAL+ D R+ + G+VSWG + C GVYT+V +Y
Sbjct: 172 MLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINY 231
Query: 682 MEWIQNNTRD 691
+ WI+N D
Sbjct: 232 IPWIENIISD 241
Score = 126 bits (318), Expect = 5e-33
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS-EH 77
I GG + ++PW V + G G L+ D +VLTAAH V K + +
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
R + + TQ V H Y D+DIAL+KL+ + ++P
Sbjct: 59 KRLSPHYTQ---AWSEAVFIHEGYTHDA--GFDNDIALIKLNNKVVINSNITP 106
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 167 bits (426), Expect = 7e-48
Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGY 629
V GWG +E G+I + L+ +P+++N+EC++ + K+T M+CAGY
Sbjct: 118 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQ-DYKITQRMVCAGY 176
Query: 630 VEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNT 689
EGGKD+C+GDSGG L+ + +G + + G+ SWG GCAR PGVYT+V YM+WI T
Sbjct: 177 KEGGKDACKGDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235
Query: 690 RDA 692
+ +
Sbjct: 236 QSS 238
Score = 122 bits (308), Expect = 1e-31
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
IVGG + E+PW V+L A + CGG+LI ++VLTAAHC
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ ++ +++ H Y +HDIAL+KL APLE+ P
Sbjct: 61 ILEL-SDITKDTPFSQIKEIIIHQNYK---VSEGNHDIALIKLQAPLEYTEFQKP 111
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 168 bits (427), Expect = 2e-47
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + + G+G+ + + + L+ T V ++S++EC+Q + ++T M+C
Sbjct: 147 SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLC 206
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ 686
A + DSCQGDSGG L+ GR + G+VSWG GCA + PGVYTRV+H++ WI+
Sbjct: 207 AADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 265
Query: 687 NNTRDAC 693
++T++
Sbjct: 266 SHTKEEN 272
Score = 125 bits (315), Expect = 3e-32
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 3 PDLKIAGCGVP--NRMDRIVGGWTTEVNEYPWVVAL-----EQAGKFFCGGTLISDRYVL 55
P+ CG +I+GG T + PW A+ + + CGG+L+S +V+
Sbjct: 6 PEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVI 65
Query: 56 TAAHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIAL 115
+A HC + +D I + V ++ H Y+A +H +DIAL
Sbjct: 66 SATHCFIDYPKKEDYIVYLGRSRL-NSNTQGEMKFEVENLILHKDYSADTL-AHHNDIAL 123
Query: 116 LKLDAP----LEFKPTVSP 130
LK+ + + T+
Sbjct: 124 LKIRSKEGRCAQPSRTIQT 142
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 167 bits (424), Expect = 2e-47
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 577 RTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKD 635
V GWG+ + L ++P++ + C++ + + K+T +M+CAG EGGKD
Sbjct: 134 AMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKD 192
Query: 636 SCQGDSGGALLMED-LDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNT 689
+C GDSGG ++ + G++ + G VSWG C + + GVY+ ++H +WIQ T
Sbjct: 193 ACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247
Score = 123 bits (311), Expect = 6e-32
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 19 IVGGWTTEVNEYPWVVALEQA-GKFFCGGTLISDRYVLTAAHCVRSSKRHK--------- 68
I G + PW+ L G+ FCGG+L+ +++TAAHC+ S K
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 69 ----DLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEF 124
D ++ +H R + + V HP+Y+ + ++D+AL++L
Sbjct: 61 LSPSDFKIILGKHWR-LRSDENEQHLGVKHTTLHPQYD---PNTFENDVALVELLESPVL 116
Query: 125 KPTVSP 130
V P
Sbjct: 117 NAFVMP 122
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 171 bits (434), Expect = 3e-47
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ----FPGFEPKLTGN 623
+ + + GT GWG + G +A +L +P++ +Q+C P +T N
Sbjct: 274 EAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTAN 332
Query: 624 MMCAGYVEGGKDSCQGDSGGALLMED-LDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHY 681
M+CAG GGKDSC+GDSGGAL+ D R+ + G+VSWG + C GVYT+V +Y
Sbjct: 333 MLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINY 392
Query: 682 MEWIQNNTRD 691
+ WI+N D
Sbjct: 393 IPWIENIISD 402
Score = 133 bits (337), Expect = 5e-34
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 10 CGVP--NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRH 67
CG+ +I GG + ++PW V + G G L+ D +VLTAAH V K
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHD 208
Query: 68 KDLIAVIS-EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKP 126
+ + R + + TQ V H Y D+DIAL+KL+ +
Sbjct: 209 ASALDIRMGTLKRLSPHYTQ---AWSEAVFIHEGYTHD--AGFDNDIALIKLNNKVVINS 263
Query: 127 TVSP 130
++P
Sbjct: 264 NITP 267
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 166 bits (423), Expect = 3e-47
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 563 ATKRGDGSHRVYSKRTGTVVGWGRVEESGQIASD-----LRATQVPVMSNQECRQFPGFE 617
+ + V GWG + A L ++PV+ + EC +
Sbjct: 110 PDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN- 168
Query: 618 PKLTGNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTR 677
++ NM+CAG + +D+C+GDSGG ++ G + + G+VSWG GC ++ GVYT+
Sbjct: 169 -MVSENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTK 226
Query: 678 VNHYMEWIQNNTRDACFC 695
V+ Y++WI + RD
Sbjct: 227 VSRYLDWIHGHIRDKEAP 244
Score = 128 bits (324), Expect = 1e-33
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
++ G T + PW V L + K CG LI +VLTAAHC+ SK+ + E+
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL---VRLGEY 57
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ +E + +V HP Y+ + D+DIALL L P T+ P
Sbjct: 58 DL-RRWEKWELDLDIKEVFVHPNYSKS---TTDNDIALLHLAQPATLSQTIVP 106
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 170 bits (432), Expect = 3e-47
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
+ + TV GWG + GQ A L+ +VP++SN C + ++ M CA
Sbjct: 235 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 294
Query: 628 GYVEGGKDSCQGDSGGALLMED---LDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEW 684
GY EGG D+CQGDSGG + ED R+ + G+VSWG GCA PGVYT+V+ + EW
Sbjct: 295 GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 354
Query: 685 IQNNTR 690
I +
Sbjct: 355 IFQAIK 360
Score = 130 bits (329), Expect = 4e-33
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 5 LKIAGCGVPN-RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRS 63
CG +DRIVGG T + +PW V+L G CGG+L+S +VLTAAHC
Sbjct: 103 AICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPE 162
Query: 64 SKRHKDLIAVIS-EHNRATVYETQIETRRVVKVLTHPKYNAQG---AKSHDHDIALLKLD 119
R V + +A+ + V V+ H Y ++ + +DIAL+ L
Sbjct: 163 RNRVLSRWRVFAGAVAQASPHG---LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLS 219
Query: 120 APLEFKPTVSP 130
+PL + P
Sbjct: 220 SPLPLTEYIQP 230
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 165 bits (421), Expect = 5e-47
Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + + G+G+ + + + L+ T V ++S++EC+Q + ++T M+C
Sbjct: 124 SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLC 183
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ 686
A + DSCQGDSGG L+ GR + G+VSWG GCA + PGVYTRV+H++ WI+
Sbjct: 184 AADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIR 242
Query: 687 NNTRD 691
++T++
Sbjct: 243 SHTKE 247
Score = 114 bits (287), Expect = 1e-28
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 19 IVGGWTTEVNEYPWVVAL-----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAV 73
I+GG T + PW A+ + + CGG+LIS +V++A HC + +D I
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 74 ISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAP----LEFKPTVS 129
+ V ++ H Y+A +H +DIALLK+ + + T+
Sbjct: 61 LGRSRL-NSNTQGEMKFEVENLILHKDYSADTL-AHHNDIALLKIRSKEGRCAQPSRTIQ 118
Query: 130 P 130
Sbjct: 119 T 119
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 165 bits (420), Expect = 8e-47
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + + GWG ++E+ S LR VP++++ +C + ++ NM+C
Sbjct: 117 EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLC 176
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ 686
AGY + D+CQGDSGG L E +G + G++SWG GC R + PGVYTRV +Y++WI
Sbjct: 177 AGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIN 235
Query: 687 NNTRDACFC 695
+ R
Sbjct: 236 DRIRPPRRL 244
Score = 119 bits (300), Expect = 2e-30
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG ++ +PW+ A+ G FC G+L+ +V++AAHC S + V+ +H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAP----LEFKPTVSP 130
+T + K + + Y+ DHD+ L++L V P
Sbjct: 60 F-NRTTDVTQTFGIEKYIPYTLYSVF--NPSDHDLVLIRLKKKGDRCATRSQFVQP 112
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 164 bits (418), Expect = 9e-47
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAG 628
R V GWG + +I + L+ ++P+++N+EC++ + G K+T M+CAG
Sbjct: 118 GERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRG--HKITHKMICAG 175
Query: 629 YVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNN 688
Y EGGKD+C+GDSGG L + + + + G+ SWG GCA+ PGVYT V Y++WI
Sbjct: 176 YREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
Query: 689 TR 690
T+
Sbjct: 235 TQ 236
Score = 119 bits (301), Expect = 1e-30
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
IVGG + E+PW V L + CGG++I ++++LTAAHC + K L
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
N++ + E V +++ H +Y +DIALLKL+ + + + P
Sbjct: 61 ILNQSEIKEDT-SFFGVQEIIIHDQYKMA---ESGYDIALLKLETTVNYTDSQRP 111
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 164 bits (418), Expect = 1e-46
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ---FPGFEPKLTGNM 624
D G V G+G +EE A DLR ++PV + Q C + NM
Sbjct: 117 DNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNM 174
Query: 625 MCAGYVEGGKDSCQGDSGGALLMED-LDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYME 683
CAG+ +D+CQGDSGG + D R++ G+VSWGIGC+R G YT+V +Y++
Sbjct: 175 FCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVD 232
Query: 684 WIQNNTRD 691
WI+ +
Sbjct: 233 WIKKEMEE 240
Score = 124 bits (314), Expect = 2e-32
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKR----HKDLIAVI 74
I+GG ++ +PW V G GG L+ DR++LTAAH + + + L +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
N + + + +V HP Y + + + DIALL+L+ + P + P
Sbjct: 59 GHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLP 112
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 165 bits (421), Expect = 1e-46
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + + GWG ++E+ S LR VP++++ +C + ++ NM+C
Sbjct: 152 EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLC 211
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ 686
AGY + D+CQGDSGG L E +G + G++SWG GC R + PGVYTRV +Y++WI
Sbjct: 212 AGYFDCKSDACQGDSGGPLACEK-NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIN 270
Query: 687 NNTR 690
+ R
Sbjct: 271 DRIR 274
Score = 128 bits (323), Expect = 3e-33
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 3 PDLKIAGCGVPNR-----MDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTA 57
CG ++ RI+GG ++ +PW+ A+ G FC G+L+ +V++A
Sbjct: 15 ASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSA 73
Query: 58 AHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLK 117
AHC S + V+ +H +T + K + + Y+ DHD+ L++
Sbjct: 74 AHCFSHSPPRDSVSVVLGQHFF-NRTTDVTQTFGIEKYIPYTLYSV--FNPSDHDLVLIR 130
Query: 118 LDAP----LEFKPTVSP 130
L V P
Sbjct: 131 LKKKGDRCATRSQFVQP 147
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 166 bits (422), Expect = 3e-46
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQF---PGFEPKLTGNM 624
D G V G+G +EE A DLR ++PV + Q C + + NM
Sbjct: 206 DNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNM 263
Query: 625 MCAGYVEGGKDSCQGDSGGALLMEDLD-GRFLIAGVVSWGIGCARPNSPGVYTRVNHYME 683
CAG+ +D+CQGDSGG + D + R++ G+VSWGIGC+R G YT+V +Y++
Sbjct: 264 FCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVD 321
Query: 684 WIQNNTRD 691
WI+ +
Sbjct: 322 WIKKEMEE 329
Score = 131 bits (331), Expect = 9e-34
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 7 IAGCGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVR 62
+ CG P + RI+GG ++ +PW V G GG L+ DR++LTAAH +
Sbjct: 74 LPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLY 131
Query: 63 SSKR----HKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKL 118
+ + L + N + + + +V HP Y + + + DIALL+L
Sbjct: 132 PKEHEAQSNASLDVFLGHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLEL 189
Query: 119 DAPLEFKPTVSP 130
+ + P + P
Sbjct: 190 ENSVTLGPNLLP 201
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 162 bits (412), Expect = 6e-46
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 577 RTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEG-- 632
R GWG + G LR + + +N C + + +M+CA G
Sbjct: 122 RKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS--DTIYDDMICATDNTGMT 179
Query: 633 GKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTRD 691
+DSCQGDSGG L ++D G F + G+VSWGIGCA PGVY+RV + WI + +
Sbjct: 180 DRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDTITN 237
Score = 131 bits (331), Expect = 1e-34
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 19 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISE 76
IVGG E+PW V++ + + FCGG++I+DR+V+ AAHC++ + V+ E
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAP-ALVSLVVGE 59
Query: 77 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H+ + T +T V + + Y+ + ++D++++K + F V P
Sbjct: 60 HDS-SAASTVRQTHDVDSIFVNENYDPA---TLENDVSVIKTAVAITFDINVGP 109
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 164 bits (416), Expect = 6e-46
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
V GWG ++E+ + S L+ +V ++ C + ++ +CAGY EG D+CQ
Sbjct: 137 WVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQ 196
Query: 639 GDSGGALL-MEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTRDACFCF 696
GDSGG L+ + + +++ G+ SWG+GCAR PGVYT Y+ WI +
Sbjct: 197 GDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIGSTAVHM 255
Score = 114 bits (288), Expect = 2e-28
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 19 IVGGWTTEVNEYPWVVAL------EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIA 72
I+GG +PW+V+L CGG+L++ +++LTAAHC R K+ D
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 73 VISEHNRATVYETQI----ETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTV 128
+ + + R V K++ H KY+ A S +DIAL+K+ P+ +
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYS---ASSEANDIALMKITPPVTCGHFI 117
Query: 129 SP 130
P
Sbjct: 118 GP 119
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 162 bits (413), Expect = 8e-46
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
++ + G+G+ E S+ L+ V + + C +T NM+C
Sbjct: 123 PADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLC 182
Query: 627 AGYVEGG------KDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNH 680
AG G D+CQGDSGG L+ + DGR + G++SWG+GC + + PGVYT+V +
Sbjct: 183 AGDTRSGGPQANLHDACQGDSGGPLVCLN-DGRMTLVGIISWGLGCGQKDVPGVYTKVTN 241
Query: 681 YMEWIQNNTR 690
Y++WI++N R
Sbjct: 242 YLDWIRDNMR 251
Score = 116 bits (292), Expect = 2e-29
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 19 IVGGWTTEVNEYPWVVAL------EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIA 72
I GG ++ +PW A+ +F CGG LIS ++L+AAHC + L
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 73 VISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPL----EFKPTV 128
++ R V + + V K + H +++ ++D+DIALL+L + + V
Sbjct: 61 ILGRTYR-VVPGEEEQKFEVEKYIVHKEFDDD---TYDNDIALLQLKSDSSRCAQESSVV 116
Query: 129 SP 130
Sbjct: 117 RT 118
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 161 bits (410), Expect = 9e-46
Identities = 48/122 (39%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + TV GWG E G L VP++S CR G +T M C
Sbjct: 107 ASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS-AITNQMFC 165
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ 686
AG GGKDSCQGDSGG ++ D + G VSWG GCARPN GVY V +I
Sbjct: 166 AGVSSGGKDSCQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFID 221
Query: 687 NN 688
Sbjct: 222 TY 223
Score = 125 bits (316), Expect = 7e-33
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG + ++P++V++ + G +CGG+L++ VLTAAHCV + +
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQ-SGFQIRAGSLS 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
R + T + V HP Y+ +++D+A+LKL + +
Sbjct: 60 R----TSGGITSSLSSVRVHPSYS-----GNNNDLAILKLSTSIPSGGNIGY 102
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 166 bits (422), Expect = 1e-45
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 8/128 (6%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQF---PGFEPKLTGNM 624
D G V G+G +EE A DLR ++PV + Q C + + NM
Sbjct: 274 DNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNM 331
Query: 625 MCAGYVEGGKDSCQGDSGGALLMEDLD-GRFLIAGVVSWGIGCARPNSPGVYTRVNHYME 683
CAG+ +D+CQGDSGG + D + R++ G+VSWGIGC+R G YT+V +Y++
Sbjct: 332 FCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVD 389
Query: 684 WIQNNTRD 691
WI+ +
Sbjct: 390 WIKKEMEE 397
Score = 131 bits (330), Expect = 3e-33
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 7 IAGCGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVR 62
+ CG P + +I+GG ++ +PW V G GG L+ DR++LTAAH +
Sbjct: 142 LPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLY 199
Query: 63 SSKR----HKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKL 118
+ + L + N + + + +V HP Y + + + DIALL+L
Sbjct: 200 PKEHEAQSNASLDVFLGHTNVEELMKLG--NHPIRRVSVHPDYRQDESYNFEGDIALLEL 257
Query: 119 DAPLEFKPTVSP 130
+ + P + P
Sbjct: 258 ENSVTLGPNLLP 269
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 171 bits (434), Expect = 2e-45
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
R V GWG + +I + L+ ++P+++N+EC++ K+T M+CA
Sbjct: 503 SKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR-GHKITHKMICA 561
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
GY EGGKD+C+GDSGG L + + + + G+ SWG GCA+ PGVYT V Y++WI
Sbjct: 562 GYREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILE 620
Query: 688 NTR 690
T+
Sbjct: 621 KTQ 623
Score = 125 bits (316), Expect = 3e-30
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 6 KIAGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAG---KFFCGGTLISDRYVLTAAHCVR 62
K+ RIVGG + E+PW V L + CGG++I ++++LTAAHC
Sbjct: 375 KMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 434
Query: 63 SSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPL 122
+ K L N++ + E V +++ H +Y +DIALLKL+ +
Sbjct: 435 GVESPKILRVYSGILNQSEIKEDTSF-FGVQEIIIHDQYK---MAESGYDIALLKLETTV 490
Query: 123 EFKPTVSP 130
+ + P
Sbjct: 491 NYTDSQRP 498
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 166 bits (421), Expect = 2e-45
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 572 RVYSKRTGTVVGWGRVEE--SGQIASDLRATQVPVMSNQECRQ-----FPGFEPKLTGNM 624
+++ GWG+ E + ++ L+ Q+P + +C+ G + L
Sbjct: 257 QIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTF 316
Query: 625 MCAGYVEGGKDSCQGDSGGALLMEDL--DGRFLIAGVVSWGIGCARPNSPGVYTRVNHYM 682
+CAG E GKD+C GD G L D R++ G+V+WGIGC N PGVY V H+
Sbjct: 317 VCAGG-EQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFR 375
Query: 683 EWIQNNTRDACFCF 696
WI +
Sbjct: 376 NWIDQEMQAKGLST 389
Score = 138 bits (349), Expect = 1e-35
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 3 PDLKIAGCGVPNRM---DRIVGGWT-TEVNEYPWVVAL--------EQAGKFFCGGTLIS 50
P LK + CG+ N +I G E E+PW+VA+ + CGG+LI+
Sbjct: 111 PVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIA 170
Query: 51 DRYVLTAAHCVRSSKRHKDLIAVIS-EHNRATVYET-QIETRRVVKVLTHPKYNAQGAKS 108
VLT AHCV S + + D I + + E + T E + R++ +V+ H +N + +
Sbjct: 171 PSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPK---T 227
Query: 109 HDHDIALLKLDAPLEFKPTVSP 130
+D+ALL LD PL +
Sbjct: 228 VVNDVALLLLDRPLVQADNIGT 249
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 161 bits (409), Expect = 2e-45
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPG--FEPKLTGNMMCA 627
++ Y+ T + GWGR + + + L+ + +PV++ +C + N +C
Sbjct: 118 NNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICV 177
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSW----GIGCARPNSPGVYTRVNHYME 683
G +C GDSGG L D G + GV SW G+G P+ P VYTRV+ Y+
Sbjct: 178 QDPAGNTGACNGDSGGPLNCPD--GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG 235
Query: 684 WIQNNT 689
WI +N+
Sbjct: 236 WIGDNS 241
Score = 121 bits (306), Expect = 2e-31
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
++GG E+PW ++ + CG +L+S L+A+HCV ++ +
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLP-NNIRVIAG 59
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
++ TQ T V H Y A S+ +DIA+L L + +
Sbjct: 60 LWQQSDTSGTQ--TANVDSYTMHENYGAG-TASYSNDIAILHLATSISLGGNIQA 111
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 160 bits (407), Expect = 1e-44
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEE------SGQIASDLRATQVPVMSNQECRQFPGFEPK 619
R + + + G V GWG ++E S L+ +P++ C+ +
Sbjct: 153 RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIR 210
Query: 620 LTGNMMCAGYVE---GGKDSCQGDSGGALLMED-LDGRFLIAGVVSWGIGCARPNSPGVY 675
+T NM CAGY D+C+GDSGG +M+ + R+ G+VSWG GC R G Y
Sbjct: 211 ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 270
Query: 676 TRVNHYMEWIQNNT 689
T V +WIQ
Sbjct: 271 THVFRLKKWIQKVI 284
Score = 139 bits (353), Expect = 3e-37
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 3 PDLKIAGCGVPNRMDRIVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHC 60
D RIV G E+ PW V L + + CG +LISDR+VLTAAHC
Sbjct: 15 EDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC 74
Query: 61 VRSSKRHK-----DLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIAL 115
+ K DL+ I +H+R + + K+ HP+YN ++ D DIAL
Sbjct: 75 LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLDRDIAL 132
Query: 116 LKLDAPLEFKPTVSP 130
+KL P+ F + P
Sbjct: 133 MKLKKPVAFSDYIHP 147
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 163 bits (415), Expect = 2e-44
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 567 GDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
+ + T V GWG E +G + L VP+ C Q + + + +C
Sbjct: 248 DELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANVPLQPRSACSQA--YRRAVPLSQLC 304
Query: 627 AGYVEGGKDSCQGDSGGALLMED-----LDGRFLIAGVVSWG-IGCARPNSPGVYTRVNH 680
G +DSC+GDSGG L + + G+VS G + C + + PG+YT V
Sbjct: 305 VGG-GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGE 363
Query: 681 YMEWIQNNTRDACFC 695
Y++WI +
Sbjct: 364 YVQWITDTMASNGLL 378
Score = 139 bits (352), Expect = 4e-36
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 9 GCGVPNRMDRIVGGWTTEVNEYPWVVALE----QAGKFFCGGTLISDRYVLTAAHCVRSS 64
CG R+ G+ +++ PW+ L +F CGG +IS+RY+LTAAHCV
Sbjct: 110 DCGNFLS-QRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGL 168
Query: 65 KRHKDLIAVISEHNRATVYETQ-----------IETRRVVKVLTHPKYNAQGAKSHDHDI 113
+ + EH +T + + + + K L H KY+ A+ HDI
Sbjct: 169 QN-DLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYD---ARHIMHDI 224
Query: 114 ALLKLDAPLEFKPTVSP 130
ALLKL+ + F+ + P
Sbjct: 225 ALLKLNRSVPFQKHIKP 241
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 159 bits (403), Expect = 2e-44
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEE------SGQIASDLRATQVPVMSNQECRQFPGFEPK 619
R + + + G V GWG ++E S L+ +P++ C+ +
Sbjct: 123 RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIR 180
Query: 620 LTGNMMCAGYVE---GGKDSCQGDSGGALLMED-LDGRFLIAGVVSWGIGCARPNSPGVY 675
+T NM CAGY D+C+GDSGG +M+ + R+ G+VSWG GC R G Y
Sbjct: 181 ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 240
Query: 676 TRVNHYMEWIQNNT 689
T V +WIQ
Sbjct: 241 THVFRLKKWIQKVI 254
Score = 129 bits (327), Expect = 6e-34
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAG--KFFCGGTLISDRYVLTAAHCVRSSKRHK-----DLI 71
IV G E+ PW V L + + CG +LISDR+VLTAAHC+ K DL+
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 72 AVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
I +H+R + + K+ HP+YN ++ D DIAL+KL P+ F + P
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLDRDIALMKLKKPVAFSDYIHP 117
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 161 bits (408), Expect = 3e-44
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Query: 573 VYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-------FPGFEPKLTGNMM 625
+ G + GWGR E+ A L+A ++PV ++C++ T NM+
Sbjct: 204 LMDGDLGLISGWGRTEK-RDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMI 262
Query: 626 CAGYVEGGKDSCQGDSGGALLMEDLD--GRFLIAGVVSWGIGCARPNSPGVYTRVNHYME 683
CAG E G DSC+GDSGGA ++D + +F AG+VSWG C G+YTRV +Y++
Sbjct: 263 CAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGTY---GLYTRVKNYVD 318
Query: 684 WIQNNTRDACFC 695
WI ++
Sbjct: 319 WIMKTMQENSTP 330
Score = 137 bits (346), Expect = 8e-36
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 7 IAGCGVP----NRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVR 62
+ CGVP RI+GG ++ +PW V + GG LI++ +VLTAAH V
Sbjct: 67 VPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVE 123
Query: 63 SSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGA----KSHDHDIALLKL 118
++ + + T + + V HP + + D+DIAL++L
Sbjct: 124 GNREPT---MYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRL 180
Query: 119 DAPLEFKPTVSP 130
P++ PTVSP
Sbjct: 181 KDPVKMGPTVSP 192
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 156 bits (398), Expect = 6e-44
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
++GWGR+ + D + ++ + CR +P FE T +CAG +EGGKD+C
Sbjct: 121 RIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTC 180
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQ----NNTRDA 692
+GDSGG L+ +G+F G+ SWG CA+P+ P YT+V +++WI+ NT +
Sbjct: 181 KGDSGGPLI---CNGQF--QGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTDAS 235
Query: 693 CF 694
C
Sbjct: 236 CP 237
Score = 126 bits (318), Expect = 5e-33
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 19 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISE 76
I+GG +NE+ ++VAL ++ FCGGTLI+ +VLTAAHC R + +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKN-----FRIKLGM 55
Query: 77 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H++ E + K N D DI L++LD+P++ ++P
Sbjct: 56 HSKKVPNEDEQTRVPKEKFFCLSSKNYT---LWDKDIMLIRLDSPVKNSKHIAP 106
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 163 bits (415), Expect = 2e-43
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
+ T V GWGR +++ ++ S L+ +V ++SN C +F G M CA
Sbjct: 438 WSPYLFQPNDTCIVSGWGREKDNERVFS-LQWGEVKLISN--CSKFYG-NRFYEKEMECA 493
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G +G D+C+GDSGG L+ D + + GVVSWG C +P PGVYT+V +Y +WI
Sbjct: 494 GTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISY 553
Query: 688 NT 689
+
Sbjct: 554 HV 555
Score = 127 bits (321), Expect = 4e-31
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 10 CGVPN----RMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSK 65
CGV N R RIVGG ++ + PW VA++ A CGG I ++LTAAHC+R+SK
Sbjct: 309 CGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASK 368
Query: 66 RHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFK 125
H + + +I V +++ H YNA ++ +DIAL+++ K
Sbjct: 369 TH-RYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAG---TYQNDIALIEMKKDGNKK 424
Query: 126 PTVSP 130
P
Sbjct: 425 DCELP 429
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 160 bits (405), Expect = 5e-43
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEE------SGQIASDLRATQVPVMSNQECRQFPGFEPK 619
R + + + G V GWG ++E S L+ +P++ C+ +
Sbjct: 288 RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDS--TRIR 345
Query: 620 LTGNMMCAGYVE---GGKDSCQGDSGGALLMED-LDGRFLIAGVVSWGIGCARPNSPGVY 675
+T NM CAGY D+C+GDSGG +M+ + R+ G+VSWG GC R G Y
Sbjct: 346 ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY 405
Query: 676 TRVNHYMEWIQNNT 689
T V +WIQ
Sbjct: 406 THVFRLKKWIQKVI 419
Score = 136 bits (345), Expect = 6e-35
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 3 PDLKIAGCGVPNRMDRIVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHC 60
D RIV G E+ PW V L + + CG +LISDR+VLTAAHC
Sbjct: 150 EDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHC 209
Query: 61 VRSSKRH-----KDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIAL 115
+ DL+ I +H+R + + K+ HP+YN ++ D DIAL
Sbjct: 210 LLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYN--WRENLDRDIAL 267
Query: 116 LKLDAPLEFKPTVSP 130
+KL P+ F + P
Sbjct: 268 MKLKKPVAFSDYIHP 282
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 154 bits (391), Expect = 9e-43
Identities = 44/110 (40%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 581 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGD 640
+ GWG + A L+ Q+PV+ N+ C ++ ++ +CAG++ GG DSCQGD
Sbjct: 138 ITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 196
Query: 641 SGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
+GG L+ + ++++ GV SWG+GCARPN PGVY RV+ ++ WI+ R
Sbjct: 197 AGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245
Score = 119 bits (301), Expect = 1e-30
Identities = 43/128 (33%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 9 GCGVP-----NRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVR 62
CG P R+VGG + +PW V+L + G FCGGTLIS +VLTAAHC+
Sbjct: 3 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLE 62
Query: 63 SSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPL 122
S R ++ H E ++ V ++ P DIALLKL +P
Sbjct: 63 KSPRPSSYKVILGAHQE-VNLEPHVQEIEVSRLFLEPTRK---------DIALLKLSSPA 112
Query: 123 EFKPTVSP 130
V P
Sbjct: 113 VITDKVIP 120
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 153 bits (389), Expect = 2e-42
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIAS--DLRATQVPVMSNQECRQF------PGFEPKLT 621
+ TV GWG V S + + L+ +VP++S + C P +
Sbjct: 115 QASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQ 174
Query: 622 GNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHY 681
+M+CAGYVEGGKD+CQGDSGG L ++G + + G+VSWG C N PGVYT + Y
Sbjct: 175 EDMVCAGYVEGGKDACQGDSGGPL-SCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSY 233
Query: 682 MEWIQNNTRDA 692
WIQ+ +
Sbjct: 234 ASWIQSKVTEL 244
Score = 120 bits (302), Expect = 1e-30
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I GG + ++PW V++ G CGG+L+S+++VL+AAHC S + + H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
Y + + ++ HP Y +G DIALL+L P+ F + P
Sbjct: 61 L-DSYSEDAKVSTLKDIIPHPSYLQEG---SQGDIALLQLSRPITFSRYIRP 108
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 152 bits (386), Expect = 2e-42
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSCQ 638
TV GWG S ++ L+ +P++S +C +PG +T M CAGY+EGGKDSCQ
Sbjct: 117 TVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG---MITNAMFCAGYLEGGKDSCQ 173
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
GDSGG ++ +G GVVSWG GCA P +PGVY +V + +W+ +
Sbjct: 174 GDSGGPVVC---NGEL--QGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217
Score = 128 bits (323), Expect = 8e-34
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG+ + P V+L +G FCGG+L+++ +V++AAHC +S + + EHN
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSR-----VEVRLGEHN 54
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
V E + +V+ HP Y++ + D+DI L+KL P V P
Sbjct: 55 I-KVTEGSEQFISSSRVIRHPNYSSY---NIDNDIMLIKLSKPATLNTYVQP 102
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 152 bits (386), Expect = 2e-42
Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 14/118 (11%)
Query: 578 TGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKD 635
+ GWG SG D L+ PV+S +C +PG K+T NM C G++EGGKD
Sbjct: 119 KCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG---KITSNMFCVGFLEGGKD 175
Query: 636 SCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQ----NNT 689
SCQGDSGG ++ + GVVSWG GCA+ N PGVYT+V +Y++WI+ N+
Sbjct: 176 SCQGDSGGPVVC-----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 228
Score = 129 bits (326), Expect = 4e-34
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQ-AGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
IVGG+ + E PW L + FCGGT++S+ Y+LTAAHC+ +KR + +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR---FKVRVGDR 57
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
N E V V+ H ++ + ++D DIA+L+L P+ F+ V+P
Sbjct: 58 NT-EQEEGGEAVHEVEVVIKHNRFTKE---TYDFDIAVLRLKTPITFRMNVAP 106
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 152 bits (387), Expect = 2e-42
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGY 629
+ K + +V GWG LR + +M N++C Q + L + +CAG
Sbjct: 109 GSTIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGA 167
Query: 630 VEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
+ G C+GD GG L+ E ++ GV+ G GCA PN PG++ RV +Y +WI
Sbjct: 168 EKIGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224
Score = 102 bits (256), Expect = 1e-24
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
+V G T W+V+L K CGG+LI + +VLTA C S KD A + H+
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDL-KDYEAWLGIHD 58
Query: 79 RATVYETQIETRRVV-KVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + + V +++ P+ + D+ L+KL P VS
Sbjct: 59 VHGRGDEKCKQVLNVSQLVYGPEGS---------DLVLMKLARPAVLDDFVST 102
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 151 bits (384), Expect = 6e-42
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 581 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGD 640
V GWGR++ +G L+ Q+ V+ C + + + NM+CAG +G SC GD
Sbjct: 129 VTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGD 187
Query: 641 SGGALLMEDLDGRFLIAGVVSWG--IGCARPNSPGVYTRVNHYMEWIQNNTR 690
SGG L + +G++ + G+VS+G +GC + P V+TRV++Y++WI +
Sbjct: 188 SGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239
Score = 111 bits (281), Expect = 6e-28
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
+VGG N +PW V+L + CGGTL+ +VLTAAHC+ SS+ ++ V+
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYR---VVL 57
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H+ + E +V K++ H +N+ S+ +DIALLKL +P+ +
Sbjct: 58 GRHSL-STNEPGSLAVKVSKLVVHQDWNSNQL-SNGNDIALLKLASPVSLTDKIQL 111
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 150 bits (382), Expect = 9e-42
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
++GWG + D + ++ C+ L +CAG +EGGKD+C+
Sbjct: 118 RIMGWGTITSPNATLPDVPHCANINILDYAVCQAA---YKGLAATTLCAGILEGGKDTCK 174
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQ----NNTRDAC 693
GDSGG L+ +G+F G++S G CA+P PG+YT+V Y +WIQ NT C
Sbjct: 175 GDSGGPLI---CNGQF--QGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTDATC 229
Score = 129 bits (326), Expect = 4e-34
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
++GG +NE+ ++ + A CGGTLI+ +VLTA HC R + R + HN
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDRGNMR-----IYLGMHN 54
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + + K N D DI L++L+ P+ ++P
Sbjct: 55 LKVLNKDALRRFPKEKYFCLNTRNDT---IWDKDIMLIRLNRPVRNSAHIAP 103
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 150 bits (380), Expect = 1e-41
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 581 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGD 640
+ GWG + +G + L + V+SNQEC ++ + MC + +C+GD
Sbjct: 121 IAGWGETKGTGN-DTVLNVALLNVISNQECNIK--HRGRVRESEMCTEGLLAPVGACEGD 177
Query: 641 SGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
GG L +++ G++ CAR P V+TRV+ +++WI R
Sbjct: 178 YGGPLACFT-HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMR 226
Score = 98.4 bits (246), Expect = 2e-23
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 15/115 (13%)
Query: 19 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI--S 75
+VGG PW V+L + G+ FCGG+L+ ++++LTA C S V +
Sbjct: 1 VVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E ++ V K++ P + + LLKL+ + V+
Sbjct: 58 LFQNPQHGEPSLQRVPVAKMVCGPSGS---------QLVLLKLERSVTLNQRVAL 103
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 149 bits (380), Expect = 1e-41
Identities = 49/109 (44%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
+ GWG + SG D L+ + P++S+ C+ ++T NM CAGY+EGGKDSCQ
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG--QITSNMFCAGYLEGGKDSCQ 174
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
GDSGG ++ G+ G+VSWG GCA+ N PGVYT+V +Y+ WI+
Sbjct: 175 GDSGGPVVC---SGKL--QGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218
Score = 128 bits (323), Expect = 9e-34
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG+T N P+ V+L +G FCGG+LI+ ++V++AAHC +S + + E N
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSG-----IQVRLGEDN 54
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
V E + K + HP YN+ + ++DI L+KL + V+
Sbjct: 55 I-NVVEGNEQFISASKSIVHPSYNSN---TLNNDIMLIKLKSAASLNSRVAS 102
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 150 bits (380), Expect = 3e-41
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGY 629
+ V GWGR+ +G IA++L+ PV+ C Q + + M+CAG
Sbjct: 130 GSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGG 189
Query: 630 VEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIG--CARPNSPGVYTRVNHYMEWIQN 687
+G +C GDSGG L + DG++ + G+VS+G G C P V+TRV+ Y++WI
Sbjct: 190 -DGVISACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQ 247
Query: 688 NTR 690
+
Sbjct: 248 KLQ 250
Score = 122 bits (309), Expect = 1e-31
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 10 CGV----PNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCV 61
CG PN R+VGG + +PW ++L + + CGGTLI+ +VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 62 RSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAP 121
++ ++ + ++N E V + H K+N+ +DIAL+KL
Sbjct: 61 SNTLTYR---VALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSF---LVRNDIALIKLAET 114
Query: 122 LEFKPTVSP 130
+E T+
Sbjct: 115 VELGDTIQV 123
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 148 bits (376), Expect = 6e-41
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSCQ 638
++GWG++ T + ++ ++ C +P +CAG ++GG+D+C
Sbjct: 121 RIMGWGKIST-TTYPDVPHCTNIFIVKHKWCEPLYPWV--PADSRTLCAGILKGGRDTCH 177
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQ----NNTRDAC 693
GDSGG L+ +G G+V+ G C + P VYT+V Y WIQ N C
Sbjct: 178 GDSGGPLI---CNGEM--HGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGNRTVTC 232
Score = 121 bits (306), Expect = 2e-31
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 19 IVGGWTTEVNEYPWVVAL--EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISE 76
+VGG +NE+P++VAL + C G LI+ +VLTAAHC R + + +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRN-----IRIKLGM 55
Query: 77 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H++ E + K G D DI L++L P+ + ++P
Sbjct: 56 HSKNIRNEDEQIRVPRGKYFCLNTKFPNG---LDKDIMLIRLRRPVTYSTHIAP 106
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 148 bits (376), Expect = 7e-41
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQF---PGFEPKLTGNMM 625
+ + V GWG S L V+ + C + + + +
Sbjct: 111 LYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVF 170
Query: 626 CAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWI 685
CAG GD+G + + GV S+ P V+ RV +Y+ I
Sbjct: 171 CAGGEYDETYIGYGDAGDPAVQNG-----TLVGVASYISSMP-SEFPSVFLRVGYYVLDI 224
Query: 686 QN 687
++
Sbjct: 225 KD 226
Score = 120 bits (304), Expect = 4e-31
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG +++ + PW V + K FCGG++++ +V+TAA CV +K D+
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTK-PSDISIHYGSSY 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEF-KPTVSP 130
R T T + K + +Y+ + ++ A+++ + P++ T
Sbjct: 60 RTT-----KGTSVMAKKIYIVRYH---PLTMQNNYAVIETEMPIKLDDKTTKK 104
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 148 bits (376), Expect = 8e-41
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
+ GWGR+ G + L+ +P + + C Q+ + + M+CAG + C G
Sbjct: 128 YISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGG--DTRSGCNG 185
Query: 640 DSGGALLMEDLDGRFLIAGVVSW--GIGCARPNSPGVYTRVNHYMEWIQN 687
DSGG L DG + + GV S+ GC P V+TRV+ +++WI
Sbjct: 186 DSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE 235
Score = 105 bits (265), Expect = 7e-26
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 22 GWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
G + W V+L + A CGG+LI+ +V+TA HC+ +S+ ++ V+ E+
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQ---VVLGEY 58
Query: 78 NRATVYET-QIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+R+ + + Q+ + HP +N+ + +DIAL+KL + V
Sbjct: 59 DRSVLEGSEQVIPINAGDLFVHPLWNSNCV-ACGNDIALVKLSRSAQLGDKVQL 111
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 147 bits (374), Expect = 8e-41
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
D R + V G+G + DL++ Q+ V+ ECR G L+ + CA
Sbjct: 113 DIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG-PIFLSLQVFCA 171
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G GD+G + +D + GV ++ +P V+T+V Y+ WIQ+
Sbjct: 172 QK--VGVSLESGDAGDPTVQQD-----TLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQD 223
Query: 688 NTR 690
+
Sbjct: 224 IIK 226
Score = 116 bits (292), Expect = 2e-29
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 21 GGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
GG T++ + PW VA+ CGG ++S +VLTAAHCV K ++
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPE-TIVIQYEST 60
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEF-KPTVSP 130
N +E ++ V + Y ++ ++DIA+L+L PL+ P
Sbjct: 61 NL---WEDPGKSDPYVSHVYLSFYR---QETMENDIAILELSRPLKLDGLKSKP 108
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 147 bits (374), Expect = 1e-40
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 580 TVVGWGRV-EESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
GWG + L+ +P++SN C+++ + K+ M+CAG G SC
Sbjct: 137 VTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY--WGTKIKDAMICAG--ASGVSSCM 192
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGG L+ + +G + + G+VSWG ++PGVY RV + W+Q
Sbjct: 193 GDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 243
Score = 123 bits (312), Expect = 4e-32
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 10 CGVP------NRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVR 62
CGVP + + RIV G +PW V+L ++ G FCGG+LI++ +V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 63 SSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPL 122
++ + V E ++ +I+ ++ KV + KYN+ + ++DI LLKL
Sbjct: 61 TTS----DVVVAGEFDQ-GSSSEKIQKLKIAKVFKNSKYNSL---TINNDITLLKLSTAA 112
Query: 123 EFKPTVSP 130
F TVS
Sbjct: 113 SFSQTVSA 120
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 147 bits (373), Expect = 2e-40
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 581 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGD 640
+ GWG +GQ+A L+ +P + C + + +M+CAG +G + CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQGD 187
Query: 641 SGGALLMEDLDGRFLIAGVVSWG--IGCARPNSPGVYTRVNHYMEWIQNNTR 690
SGG L +G++ + GV S+ +GC P V+TRV+ Y+ WI N
Sbjct: 188 SGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238
Score = 113 bits (285), Expect = 2e-28
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
+VGG + N +P ++L + CGGTLI +V+TAAHCV + V+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFR---VVV 57
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
EHN + V K++ HP +N + +DIALL+L + V
Sbjct: 58 GEHNL-NQNNGTEQYVGVQKIVVHPYWNTDDV-AAGYDIALLRLAQSVTLNSYVQL 111
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 144 bits (365), Expect = 2e-40
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 13/113 (11%)
Query: 580 TVVGWGRVEESG---QIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKD 635
GWG +E + +++ Q+ ++ N C P K+T +M+CAGY+ GGKD
Sbjct: 42 EASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPD---KVTESMLCAGYLPGGKD 98
Query: 636 SCQGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQN 687
+C GDSGG L+ +G + G+ SWG C N P +YT++ Y++WI +
Sbjct: 99 TCMGDSGGPLI---CNGMW--QGITSWGHTPCGSANKPSIYTKLIFYLDWIDD 146
Score = 39.4 bits (93), Expect = 7e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 106 AKSHDHDIALLKLDAPLEFKPTVSP 130
K + HD+ LL+L +P + V
Sbjct: 3 GKDYSHDLMLLRLQSPAKITDAVKV 27
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 146 bits (370), Expect = 5e-40
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
++GWG + D + ++ + C+ +P +CAG +EGGKD+C
Sbjct: 119 HIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPE--LLTEYRTLCAGILEGGKDTC 176
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQ----NNTRDA 692
GDSGG L+ +G+F G+VS+G C + PGVYT+V Y WIQ NT
Sbjct: 177 GGDSGGPLI---CNGQF--QGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNTTVT 231
Query: 693 C 693
C
Sbjct: 232 C 232
Score = 124 bits (315), Expect = 1e-32
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
++GG +NE+ +VA + FFC GTLI++ +VLTAAHC ++ + H+
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTN-----FQMKLGVHS 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + E + +TR + P + D DI L+KLD+ + + P
Sbjct: 56 KKVLNEDE-QTRNPKEKFICPNKK--NDEVLDKDIMLIKLDSRVSNSEHIVP 104
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 146 bits (370), Expect = 5e-40
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 9/113 (7%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQEC--RQFPGFEPKLTGNMMCAGYVEGGKDS 636
V GWG + SD LR V V+S + C + + +P +T +M+CAG +G KDS
Sbjct: 126 KVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDS 185
Query: 637 CQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRV-NHYMEWIQNN 688
C+GD+GG L+ + + +VS G C PG+YT + Y WI++N
Sbjct: 186 CKGDAGGPLICKG-----VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233
Score = 128 bits (323), Expect = 1e-33
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 18 RIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
I+GG + P++ +++ G CGG LI ++VLTAAHC + + V+ H
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + E +T + K + + + +DI L+KL + V
Sbjct: 62 SL-SKNEASKQTLEIKKFIPFSRVT---SDPQSNDIMLVKLQTAAKLNKHVKM 110
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 144 bits (366), Expect = 1e-39
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
TV GWG L V ++S Q+C + + L +M+CAG + K++C
Sbjct: 116 TVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD---LLENSMLCAGIPDSKKNAC 172
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGG L+ R + G+VSWG C +PN PGVYT+V + +WI + +
Sbjct: 173 NGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMK 221
Score = 127 bits (321), Expect = 2e-33
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+ G +PW VAL + CGG L+++R+VLTAAHC + +
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNE-----YTVHLGSDT 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + + + K HP Y+ Q +H +D+ L+KL++ V
Sbjct: 56 L---GDRRAQRIKASKSFRHPGYSTQ---THVNDLMLVKLNSQARLSSMVKK 101
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 145 bits (368), Expect = 1e-39
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
++ GWG + G+++ LR + V+ + C + L+ +M+C + C+G
Sbjct: 121 SMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKG 180
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQNNTRDACF 694
DSGG L+ ++AGV+S+ C P V T V Y+ WI+ T +
Sbjct: 181 DSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRSAL 233
Score = 116 bits (292), Expect = 2e-29
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG + P++ +L++ G CGG L+ ++VLTAAHC+ L V+ H
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQ--LRLVLGLHT 58
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
++ T + + HP+Y + ++D+ALL+LD ++ T+ P
Sbjct: 59 L----DSPGLTFHIKAAIQHPRYK--PVPALENDLALLQLDGKVKPSRTIRP 104
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 139 bits (354), Expect = 1e-39
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 591 GQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGDSGGALLMEDL 650
L+ +P++SN C+++ G K+ M+CAG G SC GDSGG L+ +
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGT--KIKDAMICAG--ASGVSSCMGDSGGPLVCKK- 55
Query: 651 DGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
+G + + G+VSWG ++PGVY RV + W+Q
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 145 bits (367), Expect = 1e-39
Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASD--LRATQVPVMSNQECRQF-------PGFEP 618
S V GWG V+ + L+ +VP+M N C
Sbjct: 114 PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVR 173
Query: 619 KLTGNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRV 678
+ +M+CAG +DSCQGDSGG L+ + +G +L AGVVSWG GCA+PN PG+YTRV
Sbjct: 174 IIRDDMLCAGN--SQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTRV 230
Query: 679 NHYMEWIQN 687
+Y++WI +
Sbjct: 231 TYYLDWIHH 239
Score = 108 bits (272), Expect = 9e-27
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKF---FCGGTLISDRYVLTAAHCV-RSSKRHKDLIAVI 74
IVGG +++PW V+L ++ FCGG+LI ++VLTAAHCV K L +
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E + Q + V +++ HP++ DIALL+L+ P+ V
Sbjct: 61 REQHL----YYQDQLLPVSRIIVHPQFYII---QTGADIALLELEEPVNISSRVHT 109
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 143 bits (364), Expect = 3e-39
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 581 VVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQGD 640
+ GWG+ G ++ L+ +P + + C + + M+CAG G C GD
Sbjct: 129 ITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGD 186
Query: 641 SGGALLMEDLDGRFLIAGVVSW--GIGCARPNSPGVYTRVNHYMEWIQN 687
SGG L + +G + + GV S+ GC P V+TRV+ Y+ W+
Sbjct: 187 SGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNG 234
Score = 113 bits (285), Expect = 1e-28
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
+VGG + N +PW ++L + CGG+LI +V+TAAHCV S++ + V+
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWR---VVL 57
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
EHN E + + V V H +N+ + +DIALL+L+ V
Sbjct: 58 GEHNL-NTNEGKEQIMTVNSVFIHSGWNSDDV-AGGYDIALLRLNTQASLNSAVQL 111
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 145 bits (367), Expect = 3e-39
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMM 625
+ H + + G + GW R + + L V ++ +EC Q +T
Sbjct: 161 KDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNV--TVTTRTY 216
Query: 626 CAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWI 685
C + G + E G + + GV+ + T+V+ Y W
Sbjct: 217 CER---SSVAAMHWMDGSVVTREH-RGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 271
Query: 686 QNNTR 690
+
Sbjct: 272 KQIMN 276
Score = 114 bits (288), Expect = 1e-28
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 11/122 (9%)
Query: 10 CGVPNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHK 68
++ + PW V L GK FCGG +I + +VLT A C +
Sbjct: 44 HDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRN-- 101
Query: 69 DLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTV 128
I V + NR ++ V H +Y+A + ++D++LL+L+ P++
Sbjct: 102 --ITVKTYFNR---TSQDPLMIKITHVHVHMRYDAD---AGENDLSLLELEWPIQCPGAG 153
Query: 129 SP 130
P
Sbjct: 154 LP 155
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 143 bits (362), Expect = 4e-39
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 578 TGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSC 637
T+ GWG G + L+ ++ V ++C + ++ + +C + G+ +C
Sbjct: 119 PCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW---RVIDSHICTLT-KRGEGAC 174
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGG L+ G+VS+G CA P VYTRV+ ++ WI N +
Sbjct: 175 HGDSGGPLVANG-----AQIGIVSFGSPCALGE-PDVYTRVSSFVSWINANLK 221
Score = 123 bits (310), Expect = 4e-32
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG V +YP+ V+L +G CG +++ + VLTAAHCV L + +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ V + + Y+ +D+AL+ L P++F V P
Sbjct: 61 L----SESGDVYDVEDAVVNKNYDDF---LLRNDVALVHLTNPIKFNDLVQP 105
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 143 bits (362), Expect = 5e-39
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
++GWG+ G ++ + ++S +EC + ++T NM+CAG + GKDSCQG
Sbjct: 118 HILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA--YPGQITQNMLCAGDEKYGKDSCQG 174
Query: 640 DSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ D + G+VSWG I C PGVYT V Y WIQ +
Sbjct: 175 DSGGPLVCGD-----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221
Score = 126 bits (318), Expect = 4e-33
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
+V G + +P+ AL +G CGG LI +VLTAAHC + + L + +HN
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPN-----LQVFLGKHN 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E+ E VV+ + HP Y+ A SHD DI LL+L P + + P
Sbjct: 56 L-RQRESSQEQSSVVRAVIHPDYD---AASHDQDIMLLRLARPAKLSELIQP 103
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 142 bits (360), Expect = 1e-38
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
GWG +E D L+ + ++ N EC++ K+T M+C G++EGGKD+C
Sbjct: 130 LASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA--HVQKVTDFMLCVGHLEGGKDTCV 187
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQN 687
GDSGG L+ DG GV SWG + C PN P V RV Y++WI++
Sbjct: 188 GDSGGPLM---CDGVL--QGVTSWGYVPCGTPNKPSVAVRVLSYVKWIED 232
Score = 121 bits (305), Expect = 3e-31
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGGW E + PW AL F CGG L+ ++VLTAAHC+ + + + HN
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQ-----LWLGRHN 55
Query: 79 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDAPLE-FKPTVS 129
T + V + HP +N Q + + HD+ LL+L P + V
Sbjct: 56 LFDDENTA-QFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVK 114
Query: 130 P 130
Sbjct: 115 V 115
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 141 bits (358), Expect = 2e-38
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQ 638
GWG D L+ + ++ N++C + E K+T M+CAG ++GG +C+
Sbjct: 132 LASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA--HEMKVTDAMLCAGEMDGGSYTCE 189
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ DG G+ SWG C P P VYT++ + WI+
Sbjct: 190 HDSGGPLI---CDGIL--QGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237
Score = 123 bits (311), Expect = 5e-32
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 18 RIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
V N PW VA+ + K+ CGG L+ +VLTAAHC + ++
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDK-----YQVWLGKN 57
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQ--------GAKSHDHDIALLKLDAPLEFKPTVS 129
N + + R V K + HP +N + +D+ LL+L P + V
Sbjct: 58 NFLEDEPSD-QHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVK 116
Query: 130 P 130
P
Sbjct: 117 P 117
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 141 bits (358), Expect = 2e-38
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
GWG S + S L+ + ++SN++C + + +T M+CAG +EGGKD+C
Sbjct: 127 LASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD---NVTDVMLCAGEMEGGKDTC 183
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGG L+ DG G+ S G CA+P +P +Y ++ + WI+ +
Sbjct: 184 AGDSGGPLI---CDGVL--QGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232
Score = 115 bits (290), Expect = 3e-29
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG+ E N PW VA+ ++ CGG LI +V+TAAHC ++ ++ +N
Sbjct: 1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCYSNN-----YQVLLGRNN 53
Query: 79 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ R V + HP Y Q H +D+ LL L P + V
Sbjct: 54 LFKDEPFA-QRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKV 112
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 143 bits (363), Expect = 2e-38
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 9/124 (7%)
Query: 566 RGDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMM 625
+ H + + G + GW R + + L V ++ +EC Q +T
Sbjct: 202 KDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNV--TVTTRTY 257
Query: 626 CAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWI 685
C + G + E G + + GV+ + T+V+ Y W
Sbjct: 258 CER---SSVAAMHWMDGSVVTREH-RGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWF 312
Query: 686 QNNT 689
+
Sbjct: 313 KQIM 316
Score = 119 bits (300), Expect = 8e-30
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 10 CGVPNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHK 68
++ + PW V L GK FCGG +I + +VLT A C +
Sbjct: 85 HDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRN-- 142
Query: 69 DLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTV 128
I V + NR + ++ V H +Y+A + ++D++LL+L+ P++
Sbjct: 143 --ITVKTYFNRTSQDP---LMIKITHVHVHMRYDAD---AGENDLSLLELEWPIQCPGAG 194
Query: 129 SP 130
P
Sbjct: 195 LP 196
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 140 bits (356), Expect = 3e-38
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ--FPGFEPKLTGNMMCAGYVEGGKDSC 637
V GWGR S + LR ++ ++ + C F P + NM+CAG + GG+DSC
Sbjct: 121 QVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSC 180
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGI--GCARPNSPGVYTRV-NHYMEWIQN 687
GDSG LL E + GV S+G+ C P PGVY + ++ WI
Sbjct: 181 NGDSGSPLLCEG-----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228
Score = 118 bits (297), Expect = 4e-30
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG + P++V L K C G LI+ +VLTAAHC + + ++ H+
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKR----SQVILGAHS 56
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
T E + V K +P Y+ + + D+ LL+L + V+
Sbjct: 57 I-TREEPTKQIMLVKKEFPYPCYD---PATREGDLKLLQLTEKAKINKYVTI 104
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 140 bits (355), Expect = 4e-38
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
V GWG + L+ + V+S + C +P ++ M CAG + G+DSC
Sbjct: 120 LVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR---QIDDTMFCAGD-KAGRDSC 175
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQNNTR 690
QGDSGG ++ +G G+VSWG CARPN PGVYT + + +WIQ +
Sbjct: 176 QGDSGGPVVC---NGSL--QGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224
Score = 127 bits (322), Expect = 1e-33
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
I+ G +++ PW AL + + +CG L+ +++LTAAHC + R + +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFR-----VRLGHY 55
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + VYE+ + + VK + HP Y+ H +D+ L+KL+ + V P
Sbjct: 56 SLSPVYESGQQMFQGVKSIPHPGYSHP---GHSNDLMLIKLNRRIRPTKDVRP 105
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 140 bits (355), Expect = 5e-38
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
GWG + + D L+ + ++ N+ C + + K+T M+CAG + GGKD+C
Sbjct: 129 LASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQ---KVTDVMLCAGEMGGGKDTC 185
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQN 687
+ DSGG L+ DG G S+G + C +P P +YT + + WI++
Sbjct: 186 RDDSGGPLI---CDGIL--QGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKD 231
Score = 119 bits (300), Expect = 1e-30
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
+VGG+ E N PW VA+ + CGG L+ +VLTAAHC + ++
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQ-----YEVWLGKNK 55
Query: 79 RATVYETQIETRRVVKVLTHPKYN--------AQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + R V K HP +N D+ LL+L P + V P
Sbjct: 56 LFQEEPSA-QHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKP 114
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 139 bits (354), Expect = 5e-38
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
GWG+ + LR ++ +M + C + + +C G + + G
Sbjct: 124 WAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY---EYKFQVCVGSPTTLRAAFMG 180
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
DSGG LL + G+VS+G A+P P ++TRV+ Y+ WI
Sbjct: 181 DSGGPLLCAG-----VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINA 221
Score = 110 bits (277), Expect = 1e-27
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
I+GG + + P++ L E+ + CGG LIS ++VLTAAHC ++
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREIT-----VIL 55
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
H+ E+ + +V K + H YN + + HDI LLKL+ +E P V+
Sbjct: 56 GAHDV-RKRESTQQKIKVEKQIIHESYN---SVPNLHDIMLLKLEKKVELTPAVNV 107
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 139 bits (354), Expect = 6e-38
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
V GWG V +G+ L+ +PV+ C + + +T +MCA +DSC+G
Sbjct: 124 DVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKG 181
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQN 687
D+GG L+ ++ GVV+ G C PG+YTRV Y WI +
Sbjct: 182 DAGGPLVCGG-----VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225
Score = 123 bits (312), Expect = 3e-32
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG E + P++ +++ G CGG L+++++VL+AAHC+ + + ++ H+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAA-DGKVQVLLGAHS 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ E V++ + HP + DHD+ LL+L P V P
Sbjct: 60 L-SQPEPSKRLYDVLRAVPHPDSQ---PDTIDHDLLLLQLSEKATLGPAVRP 107
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 140 bits (354), Expect = 8e-38
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
GWG +E + L+ + V+SN C Q P K+T M+CAG GGK +C
Sbjct: 129 YASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ---KVTKFMLCAGRWTGGKSTC 185
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQN 687
GDSGG L+ +G G+ SWG CA P P +YT+V HY +WI++
Sbjct: 186 SGDSGGPLV---CNGVL--QGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231
Score = 120 bits (303), Expect = 6e-31
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGGW E + PW V + G+ CGG L+ ++VLTAAHC+R+ ++ H+
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSV-----ILLGRHS 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQ--------GAKSHDHDIALLKLDAPLEFKPTVSP 130
+T + +V HP Y+ HD+ LL+L P E V
Sbjct: 56 LFHPEDTG-QVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKV 114
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 139 bits (352), Expect = 1e-37
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
V GWG + +G++ + L+ V V+S + C + ++P +M CAG + KDSC G
Sbjct: 119 LVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKL--YDPLYHPSMFCAGGGQDQKDSCNG 175
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ +G G+VS+G C + PGVYT + + EWI+ +
Sbjct: 176 DSGGPLI---CNGYL--QGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ 222
Score = 125 bits (317), Expect = 5e-33
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+ G + PW AL + FC G L+ ++VL+AAHC ++S + H+
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYT-----IGLGLHS 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E + + HP+YN +D+ L+KLD + T+
Sbjct: 56 LEADQEPGSQMVEASLSVRHPEYN---RPLLANDLMLIKLDESVSESDTIRS 104
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 138 bits (350), Expect = 2e-37
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
V GWGR + L+ ++ +M Q C F +C G K + +G
Sbjct: 124 RVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD---FDHNLQLCVGNPRKTKSAFKG 180
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
DSGG LL + G+VS+G A+P P V+TR++HY WI
Sbjct: 181 DSGGPLLCAG-----VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQ 221
Score = 111 bits (280), Expect = 5e-28
Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
I+GG + + P++ L FCGG LI +VLTAAHC S +
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSIT-----VTL 55
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN +T + V+K HPKYN + HDI LLKL V
Sbjct: 56 GAHNITEEEDTW-QKLEVIKQFRHPKYNTS---TLHHDIMLLKLKEKASLTLAVGT 107
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 138 bits (350), Expect = 2e-37
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSCQ 638
+V GWG+ G+ + L+ ++ V +++C + + +C G E K S +
Sbjct: 123 SVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFK 180
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGG L+ + G+VS+G P P T+V+ ++ WI+ +
Sbjct: 181 GDSGGPLVCNK-----VAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMK 225
Score = 113 bits (285), Expect = 1e-28
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
I+GG + + P++ L +Q CGG LI D +VLTAAHC SS + +
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSS-----INVTLG 55
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN E + V + + HP YN K+ +DI LL+L+ + V P
Sbjct: 56 AHNI-KEQEPTQQFIPVKRPIPHPAYN---PKNFSNDIMLLQLERKAKRTRAVQP 106
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 138 bits (349), Expect = 3e-37
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
GWG + S L+ ++ + SN++C + +P K+T ++CA + + C
Sbjct: 129 YTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE---KMTEFVLCATHRDDSGSIC 185
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQNNTR 690
GDSGGAL+ DG F G+ SWG CA N V+T+V + +WI+
Sbjct: 186 LGDSGGALI---CDGVF--QGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234
Score = 118 bits (299), Expect = 2e-30
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GGW E + PW VA+ G F CGG L+ ++VLTAAHC+ + + HN
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQ-----IWLGRHN 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNA--------QGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ +T + +V P+++ + HD+ LL+L P V
Sbjct: 56 LSKDEDTA-QFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKI 114
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 136 bits (346), Expect = 7e-37
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
+V GWGR+ + L+ + V S ++C F+ + +CAG K+S G
Sbjct: 123 SVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIAR--FKNYIPFTQICAGDPSKRKNSFSG 180
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ + G+VS+G P VYTR++ ++ WI + R
Sbjct: 181 DSGGPLVCNG-----VAQGIVSYGRNDGTT--PDVYTRISSFLSWIHSTMR 224
Score = 111 bits (280), Expect = 6e-28
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
I+GG + + P++ L CGG L+ + +VLTAAHC+ SS +
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSIN-----VTLG 55
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN E + V + + HP YN ++ +DI LLKL + VSP
Sbjct: 56 AHNI-MERERTQQVIPVRRPIPHPDYN---DETLANDIMLLKLTRKADITDKVSP 106
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 136 bits (344), Expect = 1e-36
Identities = 42/112 (37%), Positives = 59/112 (52%), Gaps = 12/112 (10%)
Query: 580 TVVGWGRVEESGQIASD-LRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSC 637
+ GWG V + + L +V + S +C + +PG K+T M+CAG G D+C
Sbjct: 121 IISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPG---KITEGMVCAGS-SNGADTC 176
Query: 638 QGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQNN 688
QGDSGG L+ DG G+ SWG C +P PGVYT++ Y WI+
Sbjct: 177 QGDSGGPLV---CDGML--QGITSWGSDPCGKPEKPGVYTKICRYTTWIKKT 223
Score = 129 bits (327), Expect = 2e-34
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+ G + PW AL Q + CGG L+ DR+VLTAAHC + + +H+
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQK-----YSVRLGDHS 55
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + + + +V + + HP YN + H HDI L++L V P
Sbjct: 56 LQSRDQPE-QEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKP 106
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 145 bits (366), Expect = 3e-36
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCA 627
++ V + + GWG + A L+ Q+PV+ N+ C ++ ++ +CA
Sbjct: 669 SPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCA 727
Query: 628 GYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQN 687
G++ GG DSCQGDSGG L+ + ++++ GV SWG+GCARPN PGVY RV+ ++ WI+
Sbjct: 728 GHLAGGTDSCQGDSGGPLVCFE-KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEG 786
Query: 688 NTR 690
R
Sbjct: 787 VMR 789
Score = 100 bits (249), Expect = 6e-22
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 10 CGVPNRMDRIVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHK 68
R+VGG + +PW V+L + G FCGGTLIS +VLTAAHC+ S R
Sbjct: 553 VEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPS 612
Query: 69 DLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTV 128
++ H E ++ V ++ P DIALLKL +P V
Sbjct: 613 SYKVILGAHQEVN-LEPHVQEIEVSRLFLEPTRK---------DIALLKLSSPAVITDKV 662
Query: 129 SP 130
P
Sbjct: 663 IP 664
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 134 bits (339), Expect = 6e-36
Identities = 42/122 (34%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 570 SHRVYSKRTGTVVGWGRVEESGQIASD-LRATQVPVMSNQECRQFPGFEPKLTGNMMCAG 628
S V T GWG +S SD LR VP+MSN +C G +T +C
Sbjct: 110 STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG---IVTDGNICID 166
Query: 629 YVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIG-CARPNSPGVYTRVNHYMEWIQN 687
GGK +C GDSGG L L G+ S+G P +TRV ++++WIQ
Sbjct: 167 S-TGGKGTCNGDSGGPLNYNGL-----TYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQT 220
Query: 688 NT 689
T
Sbjct: 221 QT 222
Score = 122 bits (308), Expect = 1e-31
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG N +P AL +FCGG+LIS ++LTAAHC+ + V+ HN
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVD---VVLGAHN 57
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
TQ+ T + H YN+ +DIA+++L P+ ++
Sbjct: 58 IREDEATQV-TIQSTDFTVHENYNSF---VISNDIAVIRLPVPVTLTAAIAT 105
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 133 bits (338), Expect = 7e-36
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
TV GWGRV + LR Q+ V +++C + F +C G K + +G
Sbjct: 123 TVAGWGRVS-MRRGTDTLREVQLRVQRDRQCLRI--FGSYDPRRQICVGDRRERKAAFKG 179
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNN 688
DSGG LL + + G+VS+G P P V+TRV+ ++ WI+
Sbjct: 180 DSGGPLLCNN-----VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTT 221
Score = 112 bits (284), Expect = 2e-28
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
I+GG + + P++ L AG+ CGG L+ + +VLTAAHC S+ +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNIN-----VTLG 55
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN E + + + HP+YN ++ +DI LL+L + V+P
Sbjct: 56 AHNI-QRRENTQQHITARRAIRHPQYN---QRTIQNDIMLLQLSRRVRRNRNVNP 106
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 133 bits (338), Expect = 9e-36
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQ-FPGFEPKLTGNMMCAGYVEGGKDSCQ 638
V GWG+V G+ L ++ V +Q C F N +C G + S +
Sbjct: 124 YVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSS--YNRANEICVGDSKIKGASFE 181
Query: 639 GDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ + AG+VS+G P V+TRV ++ WI+ +
Sbjct: 182 EDSGGPLVCKR-----AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMK 226
Score = 111 bits (279), Expect = 8e-28
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
I+GG + P++ K FCGG L+ D++VLTAAHC S +
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMT-----VTL 55
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN ETQ + V K + HP YN +DI LLKL + V P
Sbjct: 56 GAHNIKAKEETQ-QIIPVAKAIPHPDYNPD---DRSNDIMLLKLVRNAKRTRAVRP 107
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 132 bits (335), Expect = 2e-35
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 16/112 (14%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
V GWG G+++ R V V +CR N +C G + C G
Sbjct: 124 QVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----------NNVCTGVLTRRGGICNG 173
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVNHYMEWIQNNTRD 691
D G L+ E L GV S+ +G P +TRV + +WI +
Sbjct: 174 DGGTPLVCEG-----LAHGVASFSLGPC-GRGPDFFTRVALFRDWIDGVLNN 219
Score = 119 bits (301), Expect = 7e-31
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG ++P++ +++ G+ FCGG LI R+V+TAA C +S V+ ++
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYD 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
E Q + ++ Y+ + + +D+ LL+LD +V+
Sbjct: 60 L-RRRERQSRQTFSISSMSENGYD---PQQNLNDLMLLQLDREANLTSSVTI 107
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 130 bits (329), Expect = 1e-34
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
+GWG + + IAS L+ V V+++ CR+ + +C C G
Sbjct: 123 LAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR----------SNVCTLVRGRQAGVCFG 171
Query: 640 DSGGALLMEDLDGRFLIAGVVSWG-IGCARPNSPGVYTRVNHYMEWIQNNTR 690
DSG L+ LI G+ S+ GCA P + V ++ WI + +
Sbjct: 172 DSGSPLVCNG-----LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 218
Score = 115 bits (290), Expect = 2e-29
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
IVGG + +P++V+L+ G FCG TLI+ +V++AAHCV + + + V+ HN
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHN 59
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ T+ V+ + Y+ + +DI +L+L+ V
Sbjct: 60 LSRREPTRQ--VFAVQRIFENGYDPV---NLLNDIVILQLNGSATINANVQV 106
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 128 bits (323), Expect = 7e-34
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 580 TVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMCAGYVEGGKDSCQG 639
+GWGRV A L+ V V++ CR + +C C G
Sbjct: 126 LAMGWGRVGAHDPPAQVLQELNVTVVTFF-CRP----------HNICTFVPRRKAGICFG 174
Query: 640 DSGGALLMEDLDGRFLIAGVVSWGI-GCARPNSPGVYTRVNHYMEWIQNNTR 690
DSGG L+ + +I G+ S+ I GCA P +TRV Y++WI++ R
Sbjct: 175 DSGGPLICDG-----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR 221
Score = 105 bits (265), Expect = 4e-26
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL---EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS 75
IVGG + + P++ +L G FCGGTLI +VLTAAHC+R + + V+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIP-QRLVNVVLG 59
Query: 76 EHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
HN T TQ + V +V + Y+ A++ +DI L++L +P +V+
Sbjct: 60 AHNVRTQEPTQ-QHFSVAQVFLNN-YD---AENKLNDILLIQLSSPANLSASVAT 109
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 127 bits (322), Expect = 1e-33
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 567 GDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMMC 626
G+ + + TV GWG+ I L+ T V+ N C Q + + +C
Sbjct: 111 GEELNNKFENIWATVSGWGQSNTDTVI---LQYTYNLVIDNDRCAQEYPPG-IIVESTIC 166
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGI--GCARPNSPGVYTRVNHYMEW 684
GK C GDSGG + L + L+ GVVS+ GC P ++RV YM+W
Sbjct: 167 GDT-SDGKSPCFGDSGGPFV---LSDKNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDW 221
Query: 685 IQNNT 689
IQ NT
Sbjct: 222 IQQNT 226
Score = 103 bits (260), Expect = 3e-25
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 19 IVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI 74
I+ G+ +P+ L + + +CGG+LI ++++LTAAHCV + +
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVV---VYL 57
Query: 75 SEHNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ YE + ++++H +N ++ +D+AL+K+ +E+ + P
Sbjct: 58 GSAVQ---YEGEA-VVNSERIISHSMFN---PDTYLNDVALIKI-PHVEYTDNIQP 105
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 131 bits (330), Expect = 2e-32
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 38/166 (22%)
Query: 568 DGSHRVYSKRTGTVVGWGRVEE------------SGQIASDLRATQVPVMSNQECRQ--- 612
+ R + +E + L +V + + +
Sbjct: 332 CTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCER 391
Query: 613 ----------FPGFEPKLTGNMMCAGYVEG--GKDSCQGDSGGALLMEDLDGRFLIAGVV 660
+T +C G V ++C+GDSGG L++ RF+ GV+
Sbjct: 392 DAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVI 450
Query: 661 SWGI--GCARPN--------SPGVYTRVNHYMEWIQNNTRDACFCF 696
SWG+ C + + + + W++ +D F
Sbjct: 451 SWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGF 496
Score = 113 bits (284), Expect = 1e-26
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 10 CGVPNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSK 65
CG+ T+ ++ PW + G C G ++S+ +VLTAAHC
Sbjct: 211 CGMVW-----EHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD 265
Query: 66 RHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAK------SHDHDIALLKLD 119
+ + + R + VL HP YN G K +D+D+AL+KL
Sbjct: 266 KEHSIKVSVGGEKR---------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 316
Query: 120 APLEFKPTVSP 130
L++ T+ P
Sbjct: 317 NKLKYGQTIRP 327
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 125 bits (315), Expect = 1e-30
Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 16/133 (12%)
Query: 4 DLKIAGCGVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRS 63
L CGV + ++ PW V ++ + C G LISD++VLTAAHC R
Sbjct: 214 KLTDTICGV-----GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRD 268
Query: 64 SKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKS------HDHDIALLK 117
H + + + + K + P ++ K+ + DIALLK
Sbjct: 269 GNDHSLWRVNVGDPKSQWG-----KEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLK 323
Query: 118 LDAPLEFKPTVSP 130
L ++ P
Sbjct: 324 LAQKVKMSTHARP 336
Score = 122 bits (307), Expect = 2e-29
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 37/164 (22%)
Query: 563 ATKRGDGSHRVYSKRTGTVVGWGRVEESGQIAS--DLRATQVPV-----MSNQECRQ--- 612
T + + R T + + A L +++ + + C +
Sbjct: 341 CTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVS 400
Query: 613 --------FPGFEPKLTGNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGI 664
+T +C+G + + C+G+SGGA+ +E RF G+VSWG+
Sbjct: 401 QEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLER-RFRFFQVGLVSWGL 458
Query: 665 -----GCAR------------PNSPGVYTRVNHYMEWIQNNTRD 691
G A P + + W++ + D
Sbjct: 459 YNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD 502
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 125 bits (314), Expect = 7e-30
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 33/151 (21%)
Query: 578 TGTVVGWGRVEESG-------QIASDLRATQVPVMSNQECRQ-------------FPGFE 617
T + + L +V + + +
Sbjct: 589 TCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDIS 648
Query: 618 PKLTGNMMCAGYVEG--GKDSCQGDSGGALLMEDLDGRFLIAGVVSWGI--GCARPN--- 670
+T +C G V ++C+GDSGG L++ RF+ GV+SWG+ C
Sbjct: 649 EVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQK 707
Query: 671 -----SPGVYTRVNHYMEWIQNNTRDACFCF 696
+ + + + W++ +D F
Sbjct: 708 QVPAHARDFHINLFQVLPWLKEKLQDEDLGF 738
Score = 109 bits (272), Expect = 8e-25
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 24/131 (18%)
Query: 10 CGVPNRMDRIVGGWTTEVNEYPWVVAL----EQAGKFFCGGTLISDRYVLTAAHCVRSSK 65
CG+ T+ ++ PW + G C G ++S+ +VLTAAHC
Sbjct: 453 CGM-----VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD 507
Query: 66 RHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQGAKS------HDHDIALLKLD 119
+ + + R + VL HP YN G K +D+D+AL+KL
Sbjct: 508 KEHSIKVSVGGEKR---------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLK 558
Query: 120 APLEFKPTVSP 130
L++ T+ P
Sbjct: 559 NKLKYGQTIRP 569
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 111 bits (281), Expect = 3e-29
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 19 IVGGWTTEVNEYPWVVAL-EQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEH 77
IV G +PW V+L ++ G FCGG+LI++ +V+TAAHC ++ + V E
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTT----SDVVVAGEF 56
Query: 78 NRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
++ +I+ ++ KV + KYN+ + ++DI LLKL F TVS
Sbjct: 57 DQ-GSSSEKIQKLKIAKVFKNSKYNSL---TINNDITLLKLSTAASFSQTVSA 105
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 91.0 bits (227), Expect = 1e-22
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 19 IVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHN 78
I+GG E N +PW VA+ F CGG L++ ++VLTAAHC + + HN
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDN-----YEVWLGRHN 55
Query: 79 RATVYETQIETRRVVKVLTHPKYN 102
T + V HP +N
Sbjct: 56 LFENENTA-QFFGVTADFPHPGFN 78
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 60.8 bits (147), Expect = 1e-10
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 25 TEVNEYPW-VVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDL--IAVISEHNRAT 81
P+ +A G C GTLI+ +LT HCV ++ +V N +T
Sbjct: 12 ANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDST 71
Query: 82 VYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPL 122
+ + Y GA +D A++K D +
Sbjct: 72 AVNGSA---NMTEFYVPSGYINTGA--SQYDFAVIKTDTNI 107
Score = 41.5 bits (97), Expect = 3e-04
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 627 AGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVN-HYMEWI 685
D+ G+SG A+ LD I GV + G N + ++E+I
Sbjct: 157 TNLAYYTIDTFSGNSGSAM----LDQNQQIVGVHNAGYSNGTING---GPKATAAFVEFI 209
Query: 686 QNN 688
Sbjct: 210 NYA 212
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 53.5 bits (128), Expect = 7e-08
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 18/109 (16%)
Query: 25 TEVNEYPW--VVALE---QAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVIS-EHN 78
T+ + V ++ G F G ++ +LT H V ++ + N
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPT 127
+ ++ K S + D+A++K + K
Sbjct: 72 QDNYPNGGFTAEQITKY------------SGEGDLAIVKFSPNEQNKHI 108
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 52.0 bits (124), Expect = 1e-07
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 26 EVNEYPWVVALE---QAGKFFCGGTLISD---RYVLTAAHCV---RSSKRHKDLIAVISE 76
+ P + + G F C +++ V TA HC+ + ++ + +
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAY 61
Query: 77 HNRATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSP 130
+ + +++T ++ +G HD+ A+L+ + V
Sbjct: 62 DYGESEH----GVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGT 111
Score = 33.5 bits (76), Expect = 0.13
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 635 DSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVY 675
+ G SGG + + G S+G G Y
Sbjct: 163 NMTGGSSGGPWFLGNGTGGAQN-STNSYGYTFLPNVMFGPY 202
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 52.1 bits (124), Expect = 2e-07
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 25 TEVNEYPW--VVALE---QAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVI-SEHN 78
T+ + V ++ G F G ++ +LT H V ++ + S N
Sbjct: 12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71
Query: 79 RATVYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKP 126
+ ++ K S + D+A++K + K
Sbjct: 72 QDNYPNGGFTAEQITKY------------SGEGDLAIVKFSPNEQNKH 107
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 49.2 bits (117), Expect = 1e-06
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 25 TEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHNRATVYE 84
+ Y V + G G LI ++T H R + ++ I N +
Sbjct: 31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQN----RD 86
Query: 85 TQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPT 127
+ + + D+A++KL + +
Sbjct: 87 AEKNEFPTPYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESA 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 2e-06
Identities = 51/404 (12%), Positives = 112/404 (27%), Gaps = 128/404 (31%)
Query: 105 GAKSHDHDI--ALLKLDAPLEFKPTVSPDNKDDPKSELTQFKPG-----NQKSYK----- 152
+ + L KL ++ T D+ + K + + K Y+
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 153 ----WDI-VW--FNL---IGFAVLHLATLYGYYLMFTGEVKFATFLWSKSVISTDSIVEE 202
+ W FNL I L+ T + FL S + + S+
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--------------LLTTRFKQVTDFL-SAATTTHISLDHH 294
Query: 203 PSSMTDTCSPRPIALKVHKDNKDDPKSELTQFKPGNQKSYKWDIVWFNLIGFAVLHLATL 262
++T + + +D P+ E+ P ++I ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNP----------RRLSIIAESIRDGLAT 343
Query: 263 YGYYLMFTGEVKFATLL--------------YYKTWFTIF--SIGIPTLVPYYFWNEGLW 306
+ + + K T++ + ++F S IPT++ W + +
Sbjct: 344 WDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIK 401
Query: 307 ISFLICFVTRLV--TVLNGTWNVNSLAHIYG----------------------------Y 336
++ V +L +++ S I +
Sbjct: 402 SDVMV-VVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 337 RPFSKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFNI-TTLVIDFCAERGW 395
+ +F S IG +H + E + + + +DF +
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-------HH------LKNIEHPERMTLFRMVFLDF----RF 502
Query: 396 AWGLKAASPAMVKYRATKRGDGSHRVYSKVDD-NNNEYYKTWFT 438
L+ K R + S ++ ++YK +
Sbjct: 503 ---LEQ------KIRHD--STAWNASGSILNTLQQLKFYKPYIC 535
Score = 47.5 bits (112), Expect = 2e-05
Identities = 52/385 (13%), Positives = 103/385 (26%), Gaps = 137/385 (35%)
Query: 301 WNEGLWISFLI-C---FVTRLVTVLN-----GTWNVNSLAHIYGYRP------FSKEI-- 343
N W +F + C TR V + T +++ H P K +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 344 ----LPTE----NWF-VSFIGAGEGWHNYHHSFP--WDYRAAEMGQHFNITTL--VIDFC 390
LP E N +S I WD +H N L +I+
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNW-----KHVNCDKLTTIIESS 362
Query: 391 AERGWAWGLKAASPAMVKYRATKRGDGSHRVYSKVDDNNNEYYKTWFTIF--SIGIPTLV 448
L PA + + + ++F S IPT++
Sbjct: 363 --------LNVLEPAEYR----------------------KMFDR-LSVFPPSAHIPTIL 391
Query: 449 PYYFWNEGLWISFLICFVTRLV--TVLNGTWNVNSLAHIYG------------------- 487
W + + ++ V +L +++ S I
Sbjct: 392 LSLIWFDVIKSDVMV-VVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 488 ---------YRPFSKEILPTENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFNI-TTL 537
+ + +F S IG +H + E + + +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIG-------HH------LKNIEHPERMTLFRMV 496
Query: 538 VIDF------CAERGWAWGLKAASPAMV----KYRA--TKRGDGSHRVYSKRTGTVVGW- 584
+DF AW + + Y+ + Y + ++ +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAILDFL 552
Query: 585 GRVEESGQIASDLRATQVPVMSNQE 609
++EE+ + ++ +M+ E
Sbjct: 553 PKIEENLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-05
Identities = 111/639 (17%), Positives = 181/639 (28%), Gaps = 236/639 (36%)
Query: 123 EF-----KPTVSPDNKDDPKS--EL-TQF--------KPGNQKSYKWDIVWFNLIGF--A 164
+F +PT D+P + EL +F +P + ++ L F
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENC 94
Query: 165 VL-----HLATLYGYYLMFTGEVKFATFLWSKSVISTDSIVEEPSSMTDTCSPRPIALKV 219
L H L L T K+ I+ + + P AL
Sbjct: 95 YLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD-----KKSNSAL-- 145
Query: 220 HKDNKDDPKSEL-TQFKPGNQKSYKWDIVWFNLIGFAVLHLATLYGYYLMFTGEV--KFA 276
+ ++L F G Q + +F L LY Y + G++ A
Sbjct: 146 -FRAVGEGNAQLVAIF--GGQGN---TDDYFE-------ELRDLYQTYHVLVGDLIKFSA 192
Query: 277 TLLYY-----KTWFTIFSIGI--------PTLVP--YYFWNEGLWISF-LICFVTRLVTV 320
L +F+ G+ P+ P Y + IS LI V +L
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIG-VIQLAHY 249
Query: 321 LNGTWNVNSLAHIYGYRPFSKEILPTENW-------FVS--FIGAGEGWHNYHHS----- 366
+ A + G+ P E+ V+ I + W ++ S
Sbjct: 250 VV-------TAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 367 ---FPW-DYRAAEMGQHFNITTLVIDFCAERGWAWGLKAASPAMVKYRATKRGDGSHRVY 422
F + R E + ++ +++ E SP M+ + V
Sbjct: 301 TVLF-FIGVRCYEAYPNTSLPPSILEDSLEN----NEGVPSP-MLSISNLTQEQ----VQ 350
Query: 423 SKVDDNNNEYYKTWFTIFSIGIPTLVPYYFWNEGLWISFLI----CFVTRLVTVLNGTWN 478
V+ N+ +P + + IS L+ V V+ G
Sbjct: 351 DYVNKTNSH------------LPA-------GKQVEIS-LVNGAKNLV---VS---G--P 382
Query: 479 VNSLAHIYGYR-----------------PFSKEILPTENWF--VS--FIGAGEGWHNYHH 517
SL YG PFS+ L N F V+ F H
Sbjct: 383 PQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-----------H 428
Query: 518 SFPWDYRAAEMGQHFNITTLVIDFCAERGWAWGLKA-ASPAMVKYRATKRGDGSHRVYSK 576
S A++ L+ + ++ K P VY
Sbjct: 429 S-HLLVPASD---------LINKDLVKNNVSFNAKDIQIP----------------VYDT 462
Query: 577 RTGTVVGWGRVEESGQIASDL--RATQVPVMSN-QECRQFPG-----FEPKLTGNMMCAG 628
G+ + R SG I+ + ++PV + QF F P G
Sbjct: 463 FDGSDL---R-VLSGSISERIVDCIIRLPV--KWETTTQFKATHILDFGP---G------ 507
Query: 629 YVEGGKDSCQGDSG-GALLMEDLDG---RFLIAGVVSWG 663
G SG G L + DG R ++AG +
Sbjct: 508 ----------GASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 22/114 (19%)
Query: 24 TTEVNEYPWVVALEQAGKFFCGGT--LISDRYVLTAAHCVRSSKRHKDLIAVISEHNRAT 81
+ N +P+ F T +I ++T H + K I+ H
Sbjct: 8 VKDTNNFPY-----NGVVSFKDATGFVIGKNTIITNKHVSKDYKV----GDRITAHPNGD 58
Query: 82 VYETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKPTVSPDNKDD 135
I + + D DI+++ ++ + + ++
Sbjct: 59 KGNGGIYKIKSI-----------SDYPGDEDISVMNIEEQAVERGPKGFNFNEN 101
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 39.4 bits (92), Expect = 0.001
Identities = 8/90 (8%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 46 GTLISDRYVLTAAHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 105
G ++ +LT H ++ +K + + N ++++
Sbjct: 26 GFVVGKNTILTNKHVSKN---YKVGDRITAHPNSDKGNGGIYSIKKII------------ 70
Query: 106 AKSHDHDIALLKLDAPLEFKPTVSPDNKDD 135
D+++++++ + + D+
Sbjct: 71 NYPGKEDVSVIQVEERAIERGPKGFNFNDN 100
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 37.3 bits (85), Expect = 0.011
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 33 VVALEQAGKFFCGGTLISDR------YVLTAAHCVRSSKRHKDLIAVISEHNRATVYETQ 86
V A ++G C G+L+++ Y LTA HC + I V + +T
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 87 IETRRVVKVLTHPKYNAQG---AKSHDHDIALLKLDAP 121
+ + + A D LL+L+
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNA 122
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 36.2 bits (84), Expect = 0.016
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 26/120 (21%)
Query: 25 TEVNEYPWVVALEQAGKFFCGGT--LISDRYVLTAAHCVRSSKRHKDLIAVISEHNRATV 82
T+ + P+ + F GGT ++ ++T H +S+ V + H+
Sbjct: 8 TDATKEPY-----NSVVAFVGGTGVVVGKNTIVTNKHIAKSND--IFKNRVSAHHSSKGK 60
Query: 83 YETQIETRRVVKVLTHPKYNAQGAKSHDHDIALLKLDAP----LEFKPTVSP-DNKDDPK 137
+ + +V D+A++ + L F VS D K
Sbjct: 61 GGGNYDVKDIV------------EYPGKEDLAIVHVHETSTEGLNFNKNVSYTKFADGAK 108
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa}
SCOP: b.70.1.1
Length = 582
Score = 37.3 bits (86), Expect = 0.020
Identities = 34/287 (11%), Positives = 67/287 (23%), Gaps = 31/287 (10%)
Query: 347 ENWFVSFIGAGEGWHNYHHSFPWDYRAAEMGQHFNITTLVIDFCAERGWAWGLKAASPAM 406
W F G G P + + G+ I D G + +
Sbjct: 139 VVWKKKFADHGAG--YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196
Query: 407 VKYRATKRGDGSHRVYSKVDDNNNEYYKTWFTIFSIGIPTLVPYYFWNEGLWISFLICFV 466
+ R G + +W + + + W S
Sbjct: 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE 256
Query: 467 TRLVTVLNGTWNVNSLAHIYGYRPFSK-EILPTENWFVSFI-------GAGEGWHNYHHS 518
T + V G N R ++ + S G + ++ + +
Sbjct: 257 TNTIIVGAG----NPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPN 312
Query: 519 FPWDYRAAEMGQHFNITTLVIDFCAERGWAWGLKAASPAMVKYRATKRGDGSHRVYSKRT 578
WD+ F+ +VK A +G V +
Sbjct: 313 DAWDFSGNNELVLFDYKA-----------------KDGKIVKATAHADRNGFFYVVDRSN 355
Query: 579 GTVVGWGRVEESGQIASDLRATQVPVMSNQECRQFPGFEPKLTGNMM 625
G + ++ AS + + + R + G +
Sbjct: 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAV 402
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 31.5 bits (72), Expect = 0.41
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 26/90 (28%)
Query: 46 GTLISDRYVLTAAHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNAQG 105
G + ++TAAH V ++ ++ +YE KV P
Sbjct: 25 GFFSGN-DIVTAAHVVGNNTF-------VNVCYEGLMYEA--------KVRYMP------ 62
Query: 106 AKSHDHDIALLKLDAPLEFKPTVSPDNKDD 135
+ DIA + L + D
Sbjct: 63 ----EKDIAFITCPGDLHPTARLKLSKNPD 88
>3arc_B Photosystem II core light harvesting protein CP47; PSII,
membrane-protein complex, transmembrane alpha-helix, E
transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD
LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus
vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B*
3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Length = 504
Score = 32.1 bits (72), Expect = 0.67
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 7/135 (5%)
Query: 249 FNLIGFAVLHLATLYGYYLMFTGEVKFATLLYYKTW--FTIFSIGIPTLVPYYFWNEGL- 305
+++ +L LA + + + + E+ +F I + F
Sbjct: 98 AHIVLSGLLFLAACWHW-VYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFH 156
Query: 306 --WISFLICFVTRLVTVLNGTWNVNSLAHIYGYRPFSKEILPTENWFVSFIG-AGEGWHN 362
+ +V+ + V G+ P++ + + +G +H
Sbjct: 157 LTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHI 216
Query: 363 YHHSFPWDYRAAEMG 377
Y+A MG
Sbjct: 217 LVRPPQRLYKALRMG 231
Score = 30.5 bits (68), Expect = 2.1
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 438 TIFSIGIPTLVPYYFWNEGL---WISFLICFVTRLVTVLNGTWNVNSLAHIYGYRPFSKE 494
+F I + F + +V+ + V G+ P++
Sbjct: 136 KMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPG 195
Query: 495 ILPTENWFVSFIG-AGEGWHNYHHSFPWDYRAAEMG 529
+ + +G +H Y+A MG
Sbjct: 196 GVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMG 231
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 30.6 bits (69), Expect = 0.98
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 622 GNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVN 679
G+ V S GDSGGA G + G+ S GC+ ++ V
Sbjct: 124 GDGPVYNMVRTTACSAGGDSGGAH----FAGSVAL-GIHSGSSGCSGTAGSAIHQPVT 176
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 30.2 bits (68), Expect = 2.1
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 22/141 (15%)
Query: 11 GVPNRMDRIVGGWTTEVNEYPWVVALEQAGKFFCGGTLISDRYVLTAAHCVRSSKRHKDL 70
+P + V + Y + + G+ G LI VLT H + + D
Sbjct: 24 NLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFAN--GDP 81
Query: 71 IAVISEHNRATVYETQIETRR----VVKVLTHPKYNAQGAKSHDHDIALLKLDAPLEFKP 126
V + T ET V ++L P D+AL++L
Sbjct: 82 SKVSFRPSINTDDNGNTETPYGEYEVKEILQEP-------FGAGVDLALIRLKP------ 128
Query: 127 TVSPDNKDDPKSELTQFKPGN 147
N +++ K G
Sbjct: 129 ---DQNGVSLGDKISPAKIGT 146
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 28.3 bits (63), Expect = 6.2
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 622 GNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSPGVYTRVN 679
G + GDSGG L G GV S G G R + +N
Sbjct: 121 AEGTVTGLTRTTACAEGGDSGGPW----LTGSQAQ-GVTSGGTGDCRSGGITFFQPIN 173
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 28.3 bits (63), Expect = 6.7
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 23/88 (26%)
Query: 44 CGGTLISDRYVLTAAHCVRSSKRHKDLIAVISEHNRATVYETQIETRRVVKVLTHPKYNA 103
S Y LTA HC + T + T +
Sbjct: 18 FNVRSGSTYYFLTAGHCTDGA---------------TTWWANSARTTVLGTT-------- 54
Query: 104 QGAKSHDHDIALLKLDAPLEFKPTVSPD 131
G+ ++D +++ K
Sbjct: 55 SGSSFPNNDYGIVRYTNTTIPKDGTVGG 82
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 27.9 bits (62), Expect = 8.2
Identities = 29/127 (22%), Positives = 36/127 (28%), Gaps = 18/127 (14%)
Query: 557 AMVKYRATKRGDGSHRVYSKRTGTVVGWGRVEESGQIASDLRATQV---PVMS-NQECRQ 612
A V+ A YS V G + T + + N
Sbjct: 58 AFVRTGAGVNLLAQVNNYSGGRVQVAGHTAAPVGSAVCRSGSTTGWHCGTITALNSSVTY 117
Query: 613 FPGFEPKLTGNMMCAGYVEGGKDSCQGDSGGALLMEDLDGRFLIAGVVSWGIGCARPNSP 672
G L +CA GDSGG+L L G GV S G G R
Sbjct: 118 PEGTVRGLIRTTVCAE---------PGDSGGSL----LAGNQAQ-GVTSGGSGNCRTGGT 163
Query: 673 GVYTRVN 679
+ VN
Sbjct: 164 TFFQPVN 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.461
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,327,573
Number of extensions: 693741
Number of successful extensions: 2051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 217
Length of query: 696
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 596
Effective length of database: 3,909,693
Effective search space: 2330177028
Effective search space used: 2330177028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)