RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6528
(421 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 266 bits (683), Expect = 4e-88
Identities = 101/234 (43%), Positives = 140/234 (59%), Gaps = 4/234 (1%)
Query: 70 IVGGQPTEVNQYPWMVRLSYF-NRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
IVGG ++ +PW V L Y R +CGG+LI+ R+VLTAAHCV G +D
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHD 60
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ V + IV ++ S +DNDIALL+L V + D ++P+CLP+ N
Sbjct: 61 LSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPA 120
Query: 188 DETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
T V GWG E G ++++V VPI+SN C+ + +Y T I+DNM+CAG EG K
Sbjct: 121 GTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGT-ITDNMLCAGGLEGGK 179
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
D+CQGDSGGP+V R +GIVSWG+GC R YPGVYTR++ Y++WI++
Sbjct: 180 DACQGDSGGPLVCNDNG-RGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 266 bits (681), Expect = 8e-88
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 9/234 (3%)
Query: 69 RIVGGQPTEVNQYPWMVRLSYFN-RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEY 127
RIVGG + +PW V L Y R +CGG+LI+ R+VLTAAHCV+G I+ G +
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSH 60
Query: 128 DRCDTSSKPESRF-VIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
D +S + V + I+ ++ S +DNDIALL+L + V + D ++P+CLP+ N
Sbjct: 61 DL--SSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNV 118
Query: 186 YEDETGVVMGWG-TLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
T V GWG T E +G +++V VPI+SN CR I+DNM+CAG E
Sbjct: 119 PAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCR-RAYSGGGAITDNMLCAGGLE 177
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWI 298
G KD+CQGDSGGP+V D R+ +GIVSWG+GC R G PGVYTR++ Y++WI
Sbjct: 178 GGKDACQGDSGGPLVCN--DGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 203 bits (517), Expect = 2e-63
Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 13/230 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFY-CGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
IVGG + +PW V L + + CGG+LI++ +VLTAAHCV ++ G ++
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSNAK--SVRVVLGAHN 58
Query: 129 RCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ V + IV + DNDIALL+L V + D ++P+CLPT ++
Sbjct: 59 IVLREGGEQKFDVKKVIVHPNYNPDTDNDIALLKLKSPVTLGDTVRPICLPTASSDLPVG 118
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
T V GWG + G P +++V VP++S + CR + ++DNM+CAG G KD
Sbjct: 119 TTCTVSGWGNTKTLGLPD-TLQEVTVPVVSRETCR---SAYGGTVTDNMICAGA--GGKD 172
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWI 298
+CQGDSGGP+V S E IGIVSWG GC YPGVYT ++ Y++WI
Sbjct: 173 ACQGDSGGPLV----CSDGELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
>gnl|CDD|239582 cd03505, Delta9-FADS-like, The Delta9 Fatty Acid Desaturase
(Delta9-FADS)-like CD includes the delta-9 and delta-11
acyl CoA desaturases found in various eukaryotes
including vertebrates, insects, higher plants, and
fungi. The delta-9 acyl-lipid desaturases are found in a
wide range of bacteria. These enzymes play essential
roles in fatty acid metabolism and the regulation of
cell membrane fluidity. Acyl-CoA desaturases are the
enzymes involved in the CoA-bound desaturation of fatty
acids. Mammalian stearoyl-CoA delta-9 desaturase is a
key enzyme in the biosynthesis of monounsaturated fatty
acids, and in yeast, the delta-9 acyl-CoA desaturase
(OLE1) reaction accounts for all de nova unsaturated
fatty acid production in Saccharomyces cerevisiae. These
non-heme, iron-containing, ER membrane-bound enzymes are
part of a three-component enzyme system involving
cytochrome b5, cytochrome b5 reductase, and the delta-9
fatty acid desaturase. This complex catalyzes the NADH-
and oxygen-dependent insertion of a cis double bond
between carbons 9 and 10 of the saturated fatty acyl
substrates, palmitoyl (16:0)-CoA or stearoyl (18:0)-CoA,
yielding the monoenoic products palmitoleic (16:l) or
oleic (18:l) acids, respectively. In cyanobacteria, the
biosynthesis of unsaturated fatty acids is initiated by
delta 9 acyl-lipid desaturase (DesC) which introduces
the first double bond at the delta-9 position of a
saturated fatty acid that has been esterified to a
glycerolipid. This domain family has extensive
hydrophobic regions that would be capable of spanning
the membrane bilayer at least twice. Comparison of
sequences also reveals the existence of three regions of
conserved histidine cluster motifs that contain the
residues: HXXXXH, HXXHH, and H/QXXHH. These histidine
residues are reported to be catalytically essential and
proposed to be the ligands for the iron atoms contained
within the rat stearoyl CoA delta-9 desaturase. Some
eukaryotic (Fungi, Euglenozoa, Mycetozoa, Rhodophyta)
desaturase domains have an adjacent C-terminal
cytochrome b5-like domain.
Length = 178
Score = 130 bits (330), Expect = 2e-36
Identities = 41/91 (45%), Positives = 54/91 (59%)
Query: 301 KSKEGCFLFFVAYVSVIATTMGAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRD 360
FL ++ + T G HRL+ H++FKA LR L + ++AGQ WV D
Sbjct: 1 SWATLVFLVLYYLLTGLGITAGYHRLWAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVAD 60
Query: 361 HRQHHKYSDTDADPHNASRGFFFSHIGWLMV 391
HR HH+YSDTD DPH+ RGF+FSH+GWL
Sbjct: 61 HRLHHRYSDTDGDPHSPKRGFWFSHVGWLGG 91
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 132 bits (334), Expect = 1e-34
Identities = 89/272 (32%), Positives = 119/272 (43%), Gaps = 27/272 (9%)
Query: 60 SCGETND--ATRIVGGQPTEVNQYPWMVRLS-----YFNRFYCGGTLINDRYVLTAAHCV 112
S +T D ++RI+GG +YP +V L Y + +CGG+ + RYVLTAAHC
Sbjct: 21 SAAQTADEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA 80
Query: 113 KGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTF-SNFDNDIALLRLNDR--VPI 169
D D SS+ E V V +F N NDIA+L L +P
Sbjct: 81 DASSPISSDVNRVVVDLND-SSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPR 139
Query: 170 VDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRP-----ACIIRDVEVPILSNQYCRT 224
V I T LN+ +G S P I+ +V V + C
Sbjct: 140 VKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTC-- 197
Query: 225 STNYSSTRISDNM-----MCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWG-AG 278
+ SD CAG P KD+CQGDSGGP+ + E+ R Q G+VSWG G
Sbjct: 198 AQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGEEGR-VQRGVVSWGDGG 254
Query: 279 CGRAGYPGVYTRITRYVEWIKEKSKEGCFLFF 310
CG PGVYT ++ Y +WI + +L F
Sbjct: 255 CGGTLIPGVYTNVSNYQDWIAAMTNGLSYLQF 286
>gnl|CDD|224316 COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].
Length = 289
Score = 99.8 bits (249), Expect = 1e-23
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Query: 302 SKEGCFLFFVAYVSVIATTMGAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRDH 361
E F + I T+G HRL++H+ FKA+ L VL + Q WV H
Sbjct: 45 LAELIFTLAYYLIGGIGITLGLHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIH 104
Query: 362 RQHHKYSDTDADPH-NASRGFFFSHIGWLMVR--KHPDVIRGGKLVDMSDLNADPLIMLQ 418
R+HH+ +DTD DPH ++ +GF++SHIGW+++ + D + L D + Q
Sbjct: 105 RKHHRKTDTDQDPHYDSFKGFWWSHIGWMLLYSAEAKDRE------TIQKLGKDIPLDWQ 158
>gnl|CDD|238511 cd01060, Membrane-FADS-like, The membrane fatty acid desaturase
(Membrane_FADS)-like CD includes membrane FADSs, alkane
hydroxylases, beta carotene ketolases (CrtW-like),
hydroxylases (CrtR-like), and other related proteins.
They are present in all groups of organisms with the
exception of archaea. Membrane FADSs are non-heme,
iron-containing, oxygen-dependent enzymes involved in
regioselective introduction of double bonds in fatty
acyl aliphatic chains. They play an important role in
the maintenance of the proper structure and functioning
of biological membranes. Alkane hydroxylases are
bacterial, integral-membrane di-iron enzymes that share
a requirement for iron and oxygen for activity similar
to that of membrane FADSs, and are involved in the
initial oxidation of inactivated alkanes. Beta-carotene
ketolase and beta-carotene hydroxylase are carotenoid
biosynthetic enzymes for astaxanthin and zeaxanthin,
respectively. This superfamily domain has extensive
hydrophobic regions that would be capable of spanning
the membrane bilayer at least twice. Comparison of these
sequences also reveals three regions of conserved
histidine cluster motifs that contain eight histidine
residues: HXXX(X)H, HXX(X)HH, and HXXHH (an additional
conserved histidine residue is seen between clusters 2
and 3). Spectroscopic and genetic evidence point to a
nitrogen-rich coordination environment located in the
cytoplasm with as many as eight histidines coordinating
the two iron ions and a carboxylate residue bridging the
two metals in the Pseudomonas oleovorans alkane
hydroxylase (AlkB). In addition, the eight histidine
residues are reported to be catalytically essential and
proposed to be the ligands for the iron atoms contained
within the rat stearoyl CoA delta-9 desaturase.
Length = 122
Score = 64.4 bits (157), Expect = 9e-13
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 307 FLFFVAYVSVIATTMGAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRDHRQHHK 366
+ + + T+ AH L H++F + L +L +A W R HR+HH+
Sbjct: 3 LALLLGLLGGLGLTVLAHEL-GHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHR 61
Query: 367 YSDTD-ADPHNASRGFFFSHIGWLMVRKHPD 396
Y++T DP +A + H G R
Sbjct: 62 YTNTPGKDPDSA--VNYLEHYG--GDRPFDT 88
>gnl|CDD|177866 PLN02220, PLN02220, delta-9 acyl-lipid desaturase.
Length = 299
Score = 64.1 bits (156), Expect = 2e-11
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 307 FLFFVAYVSVIATTMGAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRDHRQHHK 366
F + V+ ++ T HR H++FK L ++ A Q WV HR HH+
Sbjct: 60 FGLILYIVTGLSITFSYHRNLAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQ 119
Query: 367 YSDTDADPHNASRGFFFSHIGWL 389
++D+D DPH+ GF+FSH+ W+
Sbjct: 120 FTDSDRDPHSPIEGFWFSHVLWI 142
>gnl|CDD|215943 pfam00487, FA_desaturase, Fatty acid desaturase.
Length = 251
Score = 42.7 bits (100), Expect = 2e-04
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 306 CFLFFVAYVSVIATTMGAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRDHRQHH 365
L + ++ G H + L +L + W H +HH
Sbjct: 6 LLLALLLAGLLLGILGGLAHEAAHGALFRSRRLNDLLGRLLALLLGISYSAWRISHLRHH 65
Query: 366 KYSDT-DADPHNASRGFFFSHIGWLM 390
+++ DP +A R + +
Sbjct: 66 HHTNNPGKDPDSARRRLLRYALRRRL 91
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 36.6 bits (85), Expect = 0.014
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 64 TNDATRIVGGQPTEVNQYPWMVRLSYFN---RFYCGGTLINDRYVLTAAHCVK 113
+D T++ T+ Q+P+ + + R TLI VLTA HC+
Sbjct: 37 EDDRTQV-----TDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIY 84
>gnl|CDD|217716 pfam03761, DUF316, Domain of unknown function (DUF316). This
family of proteins with unknown function are from
Caenorhabditis elegans. The protein has GO references
indicating the protein is a positive regulator of growth
rate and is also involved in nematode larval
development.
Length = 280
Score = 33.9 bits (78), Expect = 0.12
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 60 SCGETND--ATRIVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVK 113
SCG ++ + G E ++YPW+V+ ++ N + T I+ R++LT++
Sbjct: 30 SCGNKTLPLPSQNINGIYLEKSEYPWLVKAAFQNGNQKNYKPPATFISTRHILTSSRLFL 89
Query: 114 GRLWFLIKATFGEYDRCDTSSK 135
K T G+ D C
Sbjct: 90 NGKMLNWKNT-GDNDTCSGGLG 110
>gnl|CDD|239590 cd03513, CrtW_beta-carotene-ketolase, Beta-carotene
ketolase/oxygenase (CrtW, also known as CrtO), the
carotenoid astaxanthin biosynthetic enzyme, initially
catalyzes the addition of two keto groups to carbons C4
and C4' of beta-carotene. Carotenoids are important
natural pigments produced by many microorganisms and
plants. Astaxanthin is reported to be an antioxidant, an
anti-cancer agent, and an immune system stimulant. A
number of bacteria and green algae can convert
beta-carotene into astaxanthin by using several
ketocarotenoids as intermediates and CrtW and a
beta-carotene hydroxylase (CrtZ). CrtW initially
converts beta-carotene to canthaxanthin via echinenone,
and CrtZ initially mediates the conversion of
beta-carotene to zeaxanthin via beta-cryptoxanthin.
After a few more intermediates are formed, CrtW and CrtZ
act in combination to produce astaxanthin. Sequences of
this domain family appear to be structurally related to
membrane fatty acid desaturases and alkane hydroxylases.
They all share in common extensive hydrophobic regions
that are capable of spanning the membrane bilayer at
least twice. Comparison of these sequences also reveals
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXXHH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within homologs, stearoyl
CoA desaturase and alkane hydroxylase.
Length = 225
Score = 33.1 bits (76), Expect = 0.21
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 18/60 (30%)
Query: 350 GQNCLWVW--------VRDHRQHHKYSDTDADP--HNASR--------GFFFSHIGWLMV 391
G+ CL+++ +R H HH++ T DP H + F ++ GW +
Sbjct: 70 GRLCLFLYAGFSYDRLLRKHHLHHRHPGTAKDPDFHKGNPSGFLPWYLHFMSNYFGWRQL 129
>gnl|CDD|226356 COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
[Carbohydrate transport and metabolism].
Length = 255
Score = 30.0 bits (68), Expect = 1.8
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 10/47 (21%)
Query: 257 PMVFERED-------SRYEQIGIVSWGAGCGRAGYPGVYTRITRYVE 296
PMV E +RY +G G+ RA + RI Y+
Sbjct: 96 PMVDTAEQARQAVAATRYPPLGERGVGSALARASR---FGRIADYLA 139
>gnl|CDD|218820 pfam05943, DUF877, Protein of unknown function (DUF877). This
family consists of a number of uncharacterized bacterial
proteins. The function of this family is unknown.
Length = 423
Score = 29.9 bits (68), Expect = 2.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 144 AIVGDFTFSNFDNDIALLRL 163
A++GD+ FS+ D+ LL
Sbjct: 94 ALIGDYEFSHSPPDVELLER 113
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 29.1 bits (65), Expect = 2.6
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 38/164 (23%)
Query: 97 GTLIN-DRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFD 155
G ++ D +LT AH V+ I+ + R ++ D
Sbjct: 3 GFVVGSDGLILTNAHVVEDADASEIEVVLPDGGRVPAEVV---------------AADPD 47
Query: 156 NDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVP 215
D+ALL+++ + P + + VV+G G +
Sbjct: 48 LDLALLKVDGPLL------PAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGGGVGGLV 101
Query: 216 ILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMV 259
S + S G SGGP+
Sbjct: 102 SGSLGGVDGRYILTDADTSP----------------GSSGGPVF 129
>gnl|CDD|239587 cd03510, Rhizobitoxine-FADS-like, This CD includes the
dihydrorhizobitoxine fatty acid desaturase (RtxC)
characterized in Bradyrhizobium japonicum USDA110, and
other related proteins. Dihydrorhizobitoxine desaturase
is reported to be involved in the final step of
rhizobitoxine biosynthesis. This domain family appears
to be structurally related to the membrane fatty acid
desaturases and the alkane hydroxylases. They all share
in common extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXX(X)HH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within homologs, stearoyl
CoA desaturase and alkane hydroxylase.
Length = 175
Score = 28.4 bits (64), Expect = 4.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 322 GAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRDHRQHHKYSDTDADP 374
AH L + N L L + L + R H +HH++ T+ DP
Sbjct: 42 AAHGLLFRNR-RLNDFLGNWLA---AVPIFQSLAAYRRSHLKHHRHLGTEDDP 90
>gnl|CDD|177166 MTH00104, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 318
Score = 28.8 bits (65), Expect = 6.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 17/61 (27%)
Query: 308 LFFVA-YVSVIA----TT---MGA-HRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWV 358
LFF+A Y ++I TT +GA H + + + NF ++T+LL L++W+
Sbjct: 222 LFFMAEYANIIMMNALTTILFLGAFHNPYMPELYTTNFTIKTLLLTI--------LFLWI 273
Query: 359 R 359
R
Sbjct: 274 R 274
>gnl|CDD|234179 TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108
family. Work by Mougous, et al. (2006), describes
IAHP-related loci as a type VI secretion system
(PMID:16763151). This protein family is associated with
type VI secretion loci, although not treated explicitly
by Mougous, et al [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 473
Score = 28.8 bits (65), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 144 AIVGDFTFSNFDNDIALLR 162
A++GD+ FS+ D+ LLR
Sbjct: 143 ALIGDYEFSHSPQDVELLR 161
>gnl|CDD|225779 COG3239, DesA, Fatty acid desaturase [Lipid metabolism].
Length = 343
Score = 27.8 bits (62), Expect = 9.9
Identities = 11/80 (13%), Positives = 21/80 (26%), Gaps = 21/80 (26%)
Query: 305 GCFLFFVAYVSVIATTM--GAHRLFTHKTFKANFALRTVLLVTSTIAGQNCLWVWVRD-- 360
L ++ + + H F K N + G + +
Sbjct: 66 LALLLAGLLLTGLFSVGHDCGHGSF-FKNRWINDLI-----------GHLAAALLLAPPV 113
Query: 361 -----HRQHHKYSDTDADPH 375
H QHH +++ D
Sbjct: 114 FWRISHNQHHAHTNILDDDP 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,378,555
Number of extensions: 2023995
Number of successful extensions: 1317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1293
Number of HSP's successfully gapped: 23
Length of query: 421
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 322
Effective length of database: 6,546,556
Effective search space: 2107991032
Effective search space used: 2107991032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)