RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6528
(421 letters)
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 323 bits (831), Expect = e-110
Identities = 95/283 (33%), Positives = 146/283 (51%), Gaps = 31/283 (10%)
Query: 44 RTRRPSAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSY-----FNRFYCGGT 98
R RRP + CG +A +I+ G T ++PW + Y F +F CGG+
Sbjct: 3 RNRRP------ELLPNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGS 56
Query: 99 LINDRYVLTAAHCVKGR----LWFLIKATFGEYD-----------RCDTSSKPESRFVIR 143
LIN+RY++TAAHCV GR + L K GE++ R KP +
Sbjct: 57 LINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEE 116
Query: 144 AIV---GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLE 200
I + +DIAL+RLN +V + I+PVCLP + V+GWG E
Sbjct: 117 TIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTE 176
Query: 201 ESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVF 260
G+ + I + + VP++ + C + + R+ + +CAG E KDSC GDSGGP++
Sbjct: 177 T-GQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLLA 234
Query: 261 EREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSK 303
ER + ++ G+VS+GA CG G+PG+YT++ +Y +WI+ +
Sbjct: 235 ERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR 277
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 307 bits (789), Expect = e-104
Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 10/238 (4%)
Query: 70 IVGGQPTEVNQYPWMV--RLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEY 127
IVGG ++PW V R + +CGG++INDR+V+ AAHC++G L+ GE+
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 128 DRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
D S+ ++ V V ++ + +ND+++++ + + P+C P N Y
Sbjct: 61 DSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDP-ANDY 119
Query: 187 EDETGVVMGWGTLEESGRPA-CIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
GWGT+ G ++R V + I +N +C Y+S I D+M+CA G
Sbjct: 120 VYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV--YTSDTIYDDMICATDNTG 177
Query: 246 M--KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
M +DSCQGDSGGP+ + + +GIVSWG GC GYPGVY+R+ + WI +
Sbjct: 178 MTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDT 234
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 307 bits (788), Expect = e-104
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 11/242 (4%)
Query: 70 IVGGQPTEVNQYPWMVRL-SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
IVGGQ + + PW L + N +CGGT++++ Y+LTAAHC+ K G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKR--FKVRVGDRN 58
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
V I FT +D DIA+LRL + + P CLP
Sbjct: 59 TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAEST 118
Query: 188 DETG---VVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
T +V G+G E G + ++ +EVP + C+ S+++ I+ NM CAGY
Sbjct: 119 LMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSF---IITQNMFCAGYDT 175
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
+D+CQGDSGGP V +D Y GIVSWG GC R G G+YT++T +++WI K
Sbjct: 176 KQEDACQGDSGGPHVTRFKD-TYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT 234
Query: 305 GC 306
Sbjct: 235 RG 236
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 306 bits (787), Expect = e-104
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 7/236 (2%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLW--FLIKATFGEY 127
IVGG + +PW+V L Y +R CG +L++ ++++AAHCV GR A G +
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 128 DRCDTSSKPESRFVIRAIVG--DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
+ + +S +I IV + DNDIA++ L +V D I+P+ LP
Sbjct: 61 MKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVF 120
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
+ GWGT+ G A I+++ +VP+LSN+ C+ I++NM+CAGY EG
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ--MPEYNITENMICAGYEEG 178
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
DSCQGDSGGP++ + E++R+ G+ S+G C PGVY R++R+ EWI+
Sbjct: 179 GIDSCQGDSGGPLMCQ-ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSF 233
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 306 bits (786), Expect = e-104
Identities = 89/239 (37%), Positives = 140/239 (58%), Gaps = 11/239 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
+VGG+ + Q+PW V L+ +CGG+++N+++++TAAHCV+ I GE++
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNI 58
Query: 130 CDTSSKPESRFVIRAIVG---DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPT--VLNN 184
+T + R VIR I + + +++DIALL L++ + + + P+C+ N
Sbjct: 59 EETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ +G V GWG + GR A +++ + VP++ C ST + I++NM CAG+ E
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKF---TITNNMFCAGFHE 175
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSK 303
G +DSCQGDSGGP V E E GI+SWG C G G+YT+++RYV WIKEK+K
Sbjct: 176 GGRDSCQGDSGGPHVTEVEG-TSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 305 bits (783), Expect = e-103
Identities = 81/237 (34%), Positives = 109/237 (45%), Gaps = 16/237 (6%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLW-FLIKATFGEYD 128
+VGG ++P+MVRL CGG L VLTAAHCV G I AT G D
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
SS + + FT + D AL++L + P Y
Sbjct: 57 L--QSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQ-----PTLKIAT-TTAYN 108
Query: 188 DETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
T V GWG E G + VP +S+ CR+S S +++ M+CAGY +
Sbjct: 109 QGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS--SSFILVANEMICAGYDTKQE 166
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
D+CQGDSGGPM + + Q+GIVSWG GC R G GVYT ++ + I ++
Sbjct: 167 DTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART 223
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 305 bits (784), Expect = e-103
Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 8/239 (3%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKG-RLWFLIKATFGEYD 128
IVGG+ + PW V L CGGTLIN +V++AAHC + W + A GE+D
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ +SR V + I+ + ++DIALLRL+ V + D + P+CLP +
Sbjct: 61 LSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERT 120
Query: 188 DETG---VVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSST--RISDNMMCAGY 242
+V GWG L + G A + + VP L Q C + I++ M CAGY
Sbjct: 121 LAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGY 180
Query: 243 PEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
+G KDSC+GDSGGP + GIVSWG GC G+ GVYTR+++Y+EW+++
Sbjct: 181 SDGSKDSCKGDSGGPHATH-YRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKL 238
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 300 bits (771), Expect = e-101
Identities = 80/234 (34%), Positives = 113/234 (48%), Gaps = 11/234 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG +P++V +S +CGG+L+N VLTAAHCV G + G R
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 130 CDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDE 189
+ + ++ ++S +ND+A+L+L+ +P I L ++
Sbjct: 61 ----TSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGS 116
Query: 190 TGVVMGWGTLEESGRPA-CIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
+ V GWG E G + V VPI+S CR Y ++ I++ M CAG G KD
Sbjct: 117 SATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ--YGTSAITNQMFCAGVSSGGKD 174
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKS 302
SCQGDSGGP+V DS IG VSWG GC R Y GVY + +I +
Sbjct: 175 SCQGDSGGPIV----DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA 224
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 307 bits (787), Expect = e-101
Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 32/291 (10%)
Query: 43 RRTRRPSAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYFN----RFYCGGT 98
+ + CG + R+ G +++ PWM L Y RF CGG
Sbjct: 93 NIQHNSKVMSLFKDENFDCGNFL-SQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGA 151
Query: 99 LINDRYVLTAAHCVKGRLWFLIKATFGEYDR-----CDTSS-------KPESRFVIRAIV 146
+I++RY+LTAAHCV G L + GE+ C + + + ++
Sbjct: 152 MISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLI 211
Query: 147 -GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPT---VLNNTYEDETGVVMGWGTLEES 202
+ + +DIALL+LN VP IKP+CLP + + T V GWGT E+
Sbjct: 212 HEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-EN 270
Query: 203 GRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFE- 261
G + ++ VP+ C + Y + + +C G + +DSC+GDSGGP+
Sbjct: 271 GSSSDVLLQANVPLQPRSACSQA--YRR-AVPLSQLCVGGGDL-QDSCKGDSGGPLQAPA 326
Query: 262 ----REDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEKSKEGCF 307
+ + GIVS G CG+ PG+YT + YV+WI +
Sbjct: 327 QYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASNGL 377
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 299 bits (769), Expect = e-101
Identities = 87/241 (36%), Positives = 131/241 (54%), Gaps = 13/241 (5%)
Query: 70 IVGGQPTEVNQYPWMVRL----SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFL---IKA 122
IVGG + ++P+ + F+ +CG ++ N+ Y +TA HCV G + ++
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 123 TFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTV 181
GE D + V + I+ +F ++ DNDI+LL+L+ + D + P+ LP
Sbjct: 61 VAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPE- 119
Query: 182 LNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAG 241
+V GWGT E G +++ V VP++S++ CR Y + I D+M+CAG
Sbjct: 120 -QGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRAD--YGADEILDSMICAG 176
Query: 242 YPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
PEG KDSCQGDSGGP+ + GIVSWG GC R GYPGVYT ++ +V+WIK
Sbjct: 177 VPEGGKDSCQGDSGGPLAAS-DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
Query: 302 S 302
+
Sbjct: 236 A 236
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 302 bits (776), Expect = e-100
Identities = 91/286 (31%), Positives = 135/286 (47%), Gaps = 18/286 (6%)
Query: 32 DNGQTKTISLFRRTRRPSAKEDYPMCDCSCGET--NDATRIVGGQPTEVNQYPWMVRLSY 89
N ++ P+C+ CG + +I GGQ + +PW V +
Sbjct: 122 VNDGKYVCEADGFWTSSKGEKSLPVCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLI-- 179
Query: 90 FNRFYCGGTLINDRYVLTAAHCVKGRL--WFLIKATFGEYDRCDTSSKPESRFVIRAIV- 146
G L+ D +VLTAAH V + + G R S + +
Sbjct: 180 LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKR--LSPHYTQAWSEAVFIH 237
Query: 147 GDFTF-SNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY--EDETGVVMGWGTLEESG 203
+T + FDNDIAL++LN++V I I P+CLP ++ D+ G GWG + G
Sbjct: 238 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-G 296
Query: 204 RPACIIRDVEVPILSNQYCRTS---TNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVF 260
A + V++PI+ +Q C + Y ++ NM+CAG G KDSC+GDSGG +VF
Sbjct: 297 FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF 356
Query: 261 E-REDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEKSKE 304
E R+ GIVSWG+ CG AG GVYT++ Y+ WI+ +
Sbjct: 357 LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD 402
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 296 bits (759), Expect = e-100
Identities = 79/235 (33%), Positives = 112/235 (47%), Gaps = 7/235 (2%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRL-WFLIKATFGEYD 128
IVGG E ++PW L + CG TLIN ++++AAHC A+FG
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ R + R IV + + D DI+L L+ VP + + VCLP
Sbjct: 61 K----PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQP 116
Query: 188 DETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
+ V G+G L+ G +R +V ++ C Y+ I+ M+CAG EG
Sbjct: 117 GDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYND-AITPRMLCAGSLEGKT 175
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKS 302
D+CQGDSGGP+V + GIVSWG C + PGVYTR+T +WI K+
Sbjct: 176 DACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 297 bits (763), Expect = 1e-99
Identities = 96/287 (33%), Positives = 135/287 (47%), Gaps = 30/287 (10%)
Query: 46 RRP--SAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYFN--RFYCGGTLIN 101
RP K + E+ RIV G E+ PW V L + CG +LI+
Sbjct: 5 LRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLIS 64
Query: 102 DRYVLTAAHCV------KGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVG--DFTFS- 152
DR+VLTAAHC+ K + G++ R E ++ I + +
Sbjct: 65 DRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRE 124
Query: 153 NFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETG---VVMGWGTLEESGRPAC-- 207
N D DIAL++L V D I PVCLP + G V GWG L+E+
Sbjct: 125 NLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGK 184
Query: 208 ----IIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE---GMKDSCQGDSGGPMVF 260
+++ V +PI+ C+ ST RI+DNM CAGY D+C+GDSGGP V
Sbjct: 185 GQPSVLQVVNLPIVERPVCKDSTRI---RITDNMFCAGYKPDEGKRGDACEGDSGGPFVM 241
Query: 261 ERE-DSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK-SKEG 305
+ ++R+ Q+GIVSWG GC R G G YT + R +WI++ + G
Sbjct: 242 KSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG 288
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 295 bits (758), Expect = 2e-99
Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 8/237 (3%)
Query: 70 IVGGQPTEVNQYPWMVRLSY---FNRFYCGGTLINDRYVLTAAHCVKG-RLWFLIKATFG 125
IVGG + ++PW V L R CGG+LI ++VLTAAHC G L + + G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 126 EYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
+ D + + I+ ++ S ++DIAL++L + + KP+ LP+ +
Sbjct: 61 ILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDT 120
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ V GWG +E G I++ V +P+++N+ C+ Y +I+ M+CAGY E
Sbjct: 121 STIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKR--YQDYKITQRMVCAGYKE 178
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
G KD+C+GDSGGP+V + + + +GI SWG GC R PGVYT++ Y++WI EK
Sbjct: 179 GGKDACKGDSGGPLVCK-HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 298 bits (765), Expect = 1e-98
Identities = 94/267 (35%), Positives = 132/267 (49%), Gaps = 17/267 (6%)
Query: 48 PSAKEDYPMCDCSCGE-TNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVL 106
P + +C CG RIVGG+ T + ++PW V L Y CGG+L++ +VL
Sbjct: 96 PRGRFLAAIC-QDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVL 154
Query: 107 TAAHCVKGRLWFL--IKATFGEYDRCDTSSKPESRFVIRAIV-------GDFTFSNFDND 157
TAAHC R L + G + V + D ND
Sbjct: 155 TAAHCFPERNRVLSRWRVFAGAVAQASPHG--LQLGVQAVVYHGGYLPFRDPNSEENSND 212
Query: 158 IALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPIL 217
IAL+ L+ +P+ + I+PVCLP + + V GWG + G+ A ++++ VPI+
Sbjct: 213 IALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPII 272
Query: 218 SNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMV---FEREDSRYEQIGIVS 274
SN C + Y + +I M CAGYPEG D+CQGDSGGP V R+ GIVS
Sbjct: 273 SNDVCNGADFYGN-QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVS 331
Query: 275 WGAGCGRAGYPGVYTRITRYVEWIKEK 301
WG GC A PGVYT+++ + EWI +
Sbjct: 332 WGTGCALAQKPGVYTKVSDFREWIFQA 358
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 292 bits (751), Expect = 2e-98
Identities = 78/241 (32%), Positives = 117/241 (48%), Gaps = 12/241 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRF-YCGGTLINDRYVLTAAHCVKGRLWF------LIKA 122
+VGG + ++PW V L + CG +LI+ ++++AAHC F A
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 123 TFGEYDRCDTSSKPESRFVIRAIVG--DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPT 180
G +D+ S+ ++ I+ F FD DIALL L +++P+ LP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120
Query: 181 VLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCA 240
+ + V GWG + G A I++ E+ +++ C +I+ MMC
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQ---QITPRMMCV 177
Query: 241 GYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
G+ G DSCQGDSGGP+ D R Q G+VSWG GC + PGVYTR+ + +WIKE
Sbjct: 178 GFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKE 237
Query: 301 K 301
Sbjct: 238 N 238
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 296 bits (760), Expect = 1e-97
Identities = 83/288 (28%), Positives = 125/288 (43%), Gaps = 27/288 (9%)
Query: 45 TRRPSAKEDYPMCDCSCGETND---ATRIVGGQ-PTEVNQYPWMVRLSYFN--------R 92
T P+ + CG N+ +I G E ++PWMV + N +
Sbjct: 102 TPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQ 161
Query: 93 FYCGGTLINDRYVLTAAHCVKGRL--WFLIKATFGEYDRC--DTSSKPESRFVIRAIV-G 147
CGG+LI VLT AHCV IK GE+D + R + + I+
Sbjct: 162 LVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHS 221
Query: 148 DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEE--SGRP 205
+F ND+ALL L+ + D I +CLP + ++ GWG E R
Sbjct: 222 NFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQ-SQIFDSTECFASGWGKKEFGSRHRY 280
Query: 206 ACIIRDVEVPILSNQYC----RTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMV-- 259
+ I++ +++P + C R + + +CAG +G KD+C GD G P+
Sbjct: 281 SNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCP 339
Query: 260 FEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKEGCF 307
R SRY Q+GIV+WG GCG PGVY + + WI ++ +
Sbjct: 340 DPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAKGL 387
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 289 bits (743), Expect = 3e-97
Identities = 86/246 (34%), Positives = 123/246 (50%), Gaps = 16/246 (6%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRL--WFLIKATFGEY 127
I GGQ + +PW V + G L+ D +VLTAAH V + + G
Sbjct: 1 IYGGQKAKPGDFPWQVLI--LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 128 DRCDTSSKPESRFVIRAIV-GDFTF-SNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
R S + + +T + FDNDIAL++LN++V I I P+CLP +
Sbjct: 59 KR--LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES 116
Query: 186 --YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTS---TNYSSTRISDNMMCA 240
D+ G GWG + G A + V++PI+ +Q C + Y ++ NM+CA
Sbjct: 117 FMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175
Query: 241 GYPEGMKDSCQGDSGGPMVFE-REDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWI 298
G G KDSC+GDSGG +VF E R+ GIVSWG+ CG AG GVYT++ Y+ WI
Sbjct: 176 GLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWI 235
Query: 299 KEKSKE 304
+ +
Sbjct: 236 ENIISD 241
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 289 bits (743), Expect = 5e-97
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 20/249 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN-RFYCGGTLINDRYVLTAAHCVKGRLWFL--------- 119
I G+P + PW+ LS+ N + +CGG+L+ +++TAAHC+ L
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 120 -----IKATFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDII 173
K G++ R + + V + + + F+ND+AL+ L + + +
Sbjct: 61 LSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFV 120
Query: 174 KPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRI 233
P+CLP E +V GWG P + ++E+PI+ + C+ + ++
Sbjct: 121 MPICLPE--GPQQEGAMVIVSGWGKQFLQRFPE-TLMEIEIPIVDHSTCQKAYAPLKKKV 177
Query: 234 SDNMMCAGYPEGMKDSCQGDSGGPMV-FEREDSRYEQIGIVSWGAGCGRAGYPGVYTRIT 292
+ +M+CAG EG KD+C GDSGGPMV RE ++ +G VSWG CG+ GVY+ I
Sbjct: 178 TRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIH 237
Query: 293 RYVEWIKEK 301
+WI+
Sbjct: 238 HNKDWIQRV 246
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 286 bits (733), Expect = 9e-96
Identities = 70/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%)
Query: 70 IVGGQPTEVNQYPWMVRL---SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
++GG ++PW + S CG +L++ L+A+HCV G L I+ G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 127 YDRCDTSSKPESRFVIRAIV---GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLN 183
+ + DTS ++ V + +++ NDIA+L L + + I+ LP N
Sbjct: 61 WQQSDTSG-TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN 119
Query: 184 NTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTS-TNYSSTRISDNMMCAGY 242
N Y T V+ GWG + + I++ +P+++ C + I DN +C
Sbjct: 120 NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179
Query: 243 PEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSW----GAGCGRAGYPGVYTRITRYVEWI 298
P G +C GDSGGP+ D +G+ SW G G YP VYTR++ Y+ WI
Sbjct: 180 PAGNTGACNGDSGGPLNC--PDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
Query: 299 KEKS 302
+ S
Sbjct: 238 GDNS 241
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 288 bits (740), Expect = 2e-95
Identities = 87/269 (32%), Positives = 127/269 (47%), Gaps = 23/269 (8%)
Query: 52 EDYPMCDCSCGE----TNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLT 107
E P C CG+ RI+GGQ ++ +PW V + R GG L+ DR++LT
Sbjct: 68 EKIPRCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILT 125
Query: 108 AAHCVKGR-----LWFLIKATFGEYDRCDTSSKPESRFVIRAIV----GDFTFSNFDNDI 158
AAH + + + G + + K + + R V NF+ DI
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLGHTNV-EELMKLGNHPIRRVSVHPDYRQDESYNFEGDI 184
Query: 159 ALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILS 218
ALL L + V + + P+CLP G V G+G +EE A +R V +P+ +
Sbjct: 185 ALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVAN 242
Query: 219 NQYCRTSTNYSSTR--ISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDS-RYEQIGIVSW 275
Q C + S NM CAG+P +D+CQGDSGG ++ R+ GIVSW
Sbjct: 243 PQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSW 302
Query: 276 GAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
G GC R G YT++ YV+WIK++ +E
Sbjct: 303 GIGCSRG--YGFYTKVLNYVDWIKKEMEE 329
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 291 bits (746), Expect = 3e-95
Identities = 97/306 (31%), Positives = 137/306 (44%), Gaps = 29/306 (9%)
Query: 25 SDSKWQADNGQTKTISLFRRTRRP--SAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYP 82
+ N T RP K + E+ RIV G E+ P
Sbjct: 119 TSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSP 178
Query: 83 WMVRLSYFN--RFYCGGTLINDRYVLTAAHCVKGRLWFL------IKATFGEYDRCDTSS 134
W V L + CG +LI+DR+VLTAAHC+ W + G++ R
Sbjct: 179 WQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYER 238
Query: 135 KPESRFVIRAIV--GDFTFS-NFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETG 191
E ++ I + + N D DIAL++L V D I PVCLP + G
Sbjct: 239 NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAG 298
Query: 192 ---VVMGWGTLEESGRPAC------IIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGY 242
V GWG L+E+ +++ V +PI+ C+ ST RI+DNM CAGY
Sbjct: 299 YKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI---RITDNMFCAGY 355
Query: 243 PE---GMKDSCQGDSGGPMVFERE-DSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWI 298
D+C+GDSGGP V + ++R+ Q+GIVSWG GC R G G YT + R +WI
Sbjct: 356 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 415
Query: 299 KEKSKE 304
++ +
Sbjct: 416 QKVIDQ 421
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 286 bits (734), Expect = 1e-94
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 33/278 (11%)
Query: 52 EDYPMCDCSCGE----TNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLT 107
+ P C CG + RI+GG ++ +PW V + + GG LIN+ +VLT
Sbjct: 61 PELPKCVPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117
Query: 108 AAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIV---------GDFTFSNFDNDI 158
AAH V+G + G + + +NFDNDI
Sbjct: 118 AAHVVEGNREPTMYV--GSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDI 175
Query: 159 ALLRLNDRVPIVDIIKPVCLP--TVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPI 216
AL+RL D V + + P+CLP + N + + G++ GWG E+ A ++ +P+
Sbjct: 176 ALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK-RDRAVRLKAARLPV 234
Query: 217 LSNQYCR------TSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDS--RYE 268
+ C+ + + + + NM+CAG +G DSC+GDSGG + + ++
Sbjct: 235 APLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFY 293
Query: 269 QIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKEGC 306
G+VSWG CG G+YTR+ YV+WI + +E
Sbjct: 294 AAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQENS 328
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 282 bits (724), Expect = 2e-94
Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 15/236 (6%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG+ +++ + PW V + + +CGG+++ +V+TAA CV G I +G R
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVD-IIKPVCLPTVLNNTYE 187
+ + + + I + N+ A++ + + D K + LP++L +
Sbjct: 61 ----TTKGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEP 116
Query: 188 DETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRT--STNYSSTRISDNMMCAGYPE 244
D + +V GWG+ + + + ++ + C + I D + CAG
Sbjct: 117 DTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEY 176
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
GD+G P V +G+ S+ + +P V+ R+ YV IK+
Sbjct: 177 DETYIGYGDAGDPAV-----QNGTLVGVASYISSMPS-EFPSVFLRVGYYVLDIKD 226
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 283 bits (725), Expect = 3e-94
Identities = 91/261 (34%), Positives = 127/261 (48%), Gaps = 28/261 (10%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN--RFYCGGTLINDRYVLTAAHCVKGRLWFL------IK 121
IV G E+ PW V L + CG +LI+DR+VLTAAHC+ W +
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 122 ATFGEYDRCDTSSKPESRFVIRAIVG--DFTFS-NFDNDIALLRLNDRVPIVDIIKPVCL 178
G++ R E ++ I + + N D DIAL++L V D I PVCL
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 179 PTVLNNT---YEDETGVVMGWGTLEESGRPAC------IIRDVEVPILSNQYCRTSTNYS 229
P G V GWG L+E+ +++ V +PI+ C+ ST
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI- 179
Query: 230 STRISDNMMCAGYPE---GMKDSCQGDSGGPMVFERE-DSRYEQIGIVSWGAGCGRAGYP 285
RI+DNM CAGY D+C+GDSGGP V + ++R+ Q+GIVSWG GC R G
Sbjct: 180 --RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY 237
Query: 286 GVYTRITRYVEWIKEK-SKEG 305
G YT + R +WI++ + G
Sbjct: 238 GFYTHVFRLKKWIQKVIDQFG 258
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 286 bits (734), Expect = 8e-94
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 23/273 (8%)
Query: 48 PSAKEDYPMCDCSCGE----TNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDR 103
E P C CG+ +I+GGQ ++ +PW V + R GG L+ DR
Sbjct: 132 EQKGEKIPRCLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDR 189
Query: 104 YVLTAAHCVKGR-----LWFLIKATFGEYDRCDTSSKPESRFVIRAIV----GDFTFSNF 154
++LTAAH + + + G + + K + + R V NF
Sbjct: 190 WILTAAHTLYPKEHEAQSNASLDVFLGHTNV-EELMKLGNHPIRRVSVHPDYRQDESYNF 248
Query: 155 DNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEV 214
+ DIALL L + V + + P+CLP G V G+G +EE A +R V +
Sbjct: 249 EGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRL 306
Query: 215 PILSNQYCRTSTNYSSTR--ISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDS-RYEQIG 271
P+ + Q C + S NM CAG+P +D+CQGDSGG ++ R+ G
Sbjct: 307 PVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATG 366
Query: 272 IVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
IVSWG GC R G YT++ YV+WIK++ +E
Sbjct: 367 IVSWGIGCSRG--YGFYTKVLNYVDWIKKEMEE 397
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 281 bits (721), Expect = 2e-93
Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 16/265 (6%)
Query: 57 CDCSCG-----ETNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHC 111
+CG T RI+GG + +PW+ + Y +C G+L++ +V++AAHC
Sbjct: 18 GRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHC 76
Query: 112 VKGRL-WFLIKATFGEYDRCDTSSKPESRFVIRAIV-GDF-TFSNFDNDIALLRL----N 164
+ G++ T+ ++ + + I + F+ D+D+ L+RL +
Sbjct: 77 FSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGD 136
Query: 165 DRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESG-RPACIIRDVEVPILSNQYCR 223
++P+CLP + + GWG L+E+ + +R+ VP++++ C
Sbjct: 137 RCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS 196
Query: 224 TSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAG 283
+ Y + IS NM+CAGY + D+CQGDSGGP+ E ++ GI+SWG GCGR
Sbjct: 197 SPEVYGA-DISPNMLCAGYFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLH 254
Query: 284 YPGVYTRITRYVEWIKEKSKEGCFL 308
PGVYTR+ YV+WI ++ + L
Sbjct: 255 KPGVYTRVANYVDWINDRIRPPRRL 279
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 279 bits (716), Expect = 3e-93
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 8/237 (3%)
Query: 70 IVGGQPTEVNQYPWMVRL---SYFNRFYCGGTLINDRYVLTAAHCVKGRL-WFLIKATFG 125
IVGG + ++PW V L S R CGG++I ++++LTAAHC G +++ G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 126 EYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
++ + V I+ + + DIALL+L V D +P+ LP+
Sbjct: 61 ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGER 120
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
V GWG + + ++ ++P+++N+ C+ Y +I+ M+CAGY E
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR--YRGHKITHKMICAGYRE 178
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
G KD+C+GDSGGP+ + + + +GI SWG GC + PGVYT + YV+WI EK
Sbjct: 179 GGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 291 bits (747), Expect = 6e-93
Identities = 81/252 (32%), Positives = 129/252 (51%), Gaps = 8/252 (3%)
Query: 55 PMCDCSCGETNDATRIVGGQPTEVNQYPWMVRL---SYFNRFYCGGTLINDRYVLTAAHC 111
+ T RIVGG + ++PW V L S R CGG++I ++++LTAAHC
Sbjct: 373 LCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 432
Query: 112 VKG-RLWFLIKATFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPI 169
G +++ G ++ + V I+ + + DIALL+L V
Sbjct: 433 FYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNY 492
Query: 170 VDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYS 229
D +P+CLP+ + V GWG + + ++ ++P+++N+ C+ Y
Sbjct: 493 TDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKR--YR 550
Query: 230 STRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYT 289
+I+ M+CAGY EG KD+C+GDSGGP+ + + + +GI SWG GC + PGVYT
Sbjct: 551 GHKITHKMICAGYREGGKDACKGDSGGPLSCK-HNEVWHLVGITSWGEGCAQRERPGVYT 609
Query: 290 RITRYVEWIKEK 301
+ YV+WI EK
Sbjct: 610 NVVEYVDWILEK 621
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 277 bits (711), Expect = 2e-92
Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGR-----LWFLIKATF 124
I+GGQ ++ +PW V + GG L+ DR++LTAAH + + +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 125 GEYDRCDTSSKPESRFVIRAIV----GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPT 180
G + + K + + R V NF+ DIALL L + V + + P+CLP
Sbjct: 59 GHTNV-EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPD 117
Query: 181 VLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTR--ISDNMM 238
G V G+G +EE A +R V +P+ + Q C + S NM
Sbjct: 118 NDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMF 175
Query: 239 CAGYPEGMKDSCQGDSGGPMVFEREDS-RYEQIGIVSWGAGCGRAGYPGVYTRITRYVEW 297
CAG+P +D+CQGDSGG ++ R+ GIVSWG GC R G YT++ YV+W
Sbjct: 176 CAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDW 233
Query: 298 IKEKSKE 304
IK++ +E
Sbjct: 234 IKKEMEE 240
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 276 bits (709), Expect = 7e-92
Identities = 75/243 (30%), Positives = 115/243 (47%), Gaps = 17/243 (6%)
Query: 70 IVGGQPTEVNQYPWMVRL-SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
++ G+ T PW V L + CG LI+ +VLTAAHC+ + GEYD
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESK--KLLVRLGEYD 58
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPT----VLN 183
+ V +++ S DNDIALL L + I P+CLP
Sbjct: 59 LRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE 118
Query: 184 NTYEDETGVVMGWGTLEESGRPAC-----IIRDVEVPILSNQYCRTSTNYSSTRISDNMM 238
+ +V GWG + A ++ +++P++ + C + +S+NM+
Sbjct: 119 LNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN---MVSENML 175
Query: 239 CAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWI 298
CAG +D+C+GDSGGPMV + +G+VSWG GCG GVYT+++RY++WI
Sbjct: 176 CAGILGDRQDACEGDSGGPMVASFHG-TWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
Query: 299 KEK 301
Sbjct: 235 HGH 237
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 273 bits (700), Expect = 9e-91
Identities = 68/238 (28%), Positives = 110/238 (46%), Gaps = 17/238 (7%)
Query: 70 IVGGQPTEVNQYPWMVRL--SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEY 127
I+GG +N++ ++V L S +CGGTLIN +VLTAAHC + G +
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKNFR----IKLGMH 56
Query: 128 DRCDTSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
+ + ++R ++ +D DI L+RL+ V I P LP+ +
Sbjct: 57 SKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPS--SPP 114
Query: 186 YEDETGVVMGWGTLEES-GRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+MGWG + + G + V + +L + CR + +CAG E
Sbjct: 115 SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILE 174
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYVEWIKEK 301
G KD+C+GDSGGP++ + GI SWG C + P YT++ +++WI+
Sbjct: 175 GGKDTCKGDSGGPLI-----CNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENI 227
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 272 bits (697), Expect = 2e-90
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 17/238 (7%)
Query: 72 GGQPTEVNQYPWMVRLSYF---NRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
GG+ T++ Q PW V + + CGG +++ +VLTAAHCV + I + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDI-IKPVCLPTVLNNTY 186
+ +S + + + +NDIA+L L+ + + + KP LP +
Sbjct: 62 LWEDPG--KSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPK 119
Query: 187 EDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+V G+G + ++ ++ ++ CRT Y +S + CA
Sbjct: 120 TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTK--YGPIFLSLQVFCAQK--VG 175
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
GD+G P V + +G+ ++ G P V+T++ YV WI++ K+
Sbjct: 176 VSLESGDAGDPTV-----QQDTLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK 227
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 271 bits (696), Expect = 3e-90
Identities = 82/235 (34%), Positives = 115/235 (48%), Gaps = 15/235 (6%)
Query: 70 IVGGQPTEVNQYPWMVRL-SYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
IVGG + + PW L + N +CGGT++++ Y+LTAAHC+ K G+ +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRN 58
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
V I FT +D DIA+LRL + + P LPT
Sbjct: 59 TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPT--APPAT 116
Query: 188 DETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
++ GWG SG ++ ++ P+LS C S +I+ NM C G+ EG
Sbjct: 117 GTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG---KITSNMFCVGFLEGG 173
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
KDSCQGDSGGP+V + G+VSWG GC + PGVYT++ YV+WIK
Sbjct: 174 KDSCQGDSGGPVV-----CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT 223
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 271 bits (695), Expect = 3e-90
Identities = 81/232 (34%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG + P V L +CGG+L+N+ +V++AAHC K R ++ GE++
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSR----VEVRLGEHNI 55
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
T + R I +++ N DNDI L++L+ + ++PV LPT +
Sbjct: 56 KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT--SCAPAG 113
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
V GWG S + ++ + +PILS C S I++ M CAGY EG KD
Sbjct: 114 TMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG---MITNAMFCAGYLEGGKD 170
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
SCQGDSGGP+V E G+VSWG GC G PGVY ++ + +W+
Sbjct: 171 SCQGDSGGPVV-----CNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 271 bits (695), Expect = 4e-90
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 17/235 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
++GG +N++ +V F+C GTLIN+ +VLTAAHC G + +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTNFQ----MKLGVHSK 56
Query: 130 CDTSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ ++R + D DI L++L+ RV + I P+ LP+ +
Sbjct: 57 KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPS--SPPSV 114
Query: 188 DETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+MGWG++ + + +L + C+ Y +CAG EG
Sbjct: 115 GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAG--YPELLTEYRTLCAGILEGG 172
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKE 300
KD+C GDSGGP++ + GIVS+GA CG+ PGVYT++ Y WI+
Sbjct: 173 KDTCGGDSGGPLI-----CNGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQS 222
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 281 bits (720), Expect = 1e-89
Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 13/296 (4%)
Query: 14 WTGQIGAKAEISDSKWQADNGQTKTISLFRRTRRPSAKEDYPMCDC--SCGETNDATRIV 71
G +T+ ++ R K P C RIV
Sbjct: 264 VDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRKRIV 323
Query: 72 GGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCD 131
GG+ ++ PW V + + CGG I ++LTAAHC++ + D
Sbjct: 324 GGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIH 383
Query: 132 TSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDI----IKPVCLPTVLNNT 185
K + I+ ++ + NDIAL+ + D P C+P
Sbjct: 384 PDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLF 443
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
++T +V GWG +++ R ++ EV ++SN C Y + M CAG +G
Sbjct: 444 QPNDTCIVSGWGREKDNERVF-SLQWGEVKLISN--CSKF--YGNRFYEKEMECAGTYDG 498
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
D+C+GDSGGP+V ++ G+VSWG CG+ +PGVYT++ Y +WI
Sbjct: 499 SIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYH 554
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 271 bits (694), Expect = 2e-89
Identities = 74/275 (26%), Positives = 123/275 (44%), Gaps = 18/275 (6%)
Query: 47 RPSAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYFNR-----FYCGGTLIN 101
+PS+ + C +I+GG+ T + PW + +R + CGG+L++
Sbjct: 1 KPSSPPEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMS 60
Query: 102 DRYVLTAAHCVKGRLW-FLIKATFGEYDRCDTSSKPESRFVIRAIV----GDFTFSNFDN 156
+V++A HC G + V I+ T ++ N
Sbjct: 61 PCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAH-HN 119
Query: 157 DIALLRL----NDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGR-PACIIRD 211
DIALL++ I+ +CLP++ N+ + + G+G + ++
Sbjct: 120 DIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKM 179
Query: 212 VEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIG 271
V ++S++ C+ Y S ++ M+CA P+ DSCQGDSGGP+V R G
Sbjct: 180 TVVKLISHRECQQPHYYGS-EVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTG 237
Query: 272 IVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKEGC 306
IVSWG GC PGVYTR++ ++ WI+ +KE
Sbjct: 238 IVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEEN 272
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 269 bits (690), Expect = 4e-89
Identities = 76/251 (30%), Positives = 123/251 (49%), Gaps = 21/251 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNR------FYCGGTLINDRYVLTAAHCVKGRL-WFLIKA 122
I GG ++ +PW + +R F CGG LI+ ++L+AAHC + R +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 123 TFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRL----NDRVPIVDIIKPVC 177
G R + + V + IV +F +DNDIALL+L + +++ VC
Sbjct: 61 ILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVC 120
Query: 178 LPTVLNNTYEDETGVVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRISDN 236
LP + + G+G E + +++ V + + C + + ++DN
Sbjct: 121 LPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNR-TVTDN 179
Query: 237 MMCAGYPEG------MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTR 290
M+CAG + D+CQGDSGGP+V D R +GI+SWG GCG+ PGVYT+
Sbjct: 180 MLCAGDTRSGGPQANLHDACQGDSGGPLVCL-NDGRMTLVGIISWGLGCGQKDVPGVYTK 238
Query: 291 ITRYVEWIKEK 301
+T Y++WI++
Sbjct: 239 VTNYLDWIRDN 249
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 268 bits (687), Expect = 1e-88
Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 11/247 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLW-FLIKATFGEYD 128
I+GG + +PW+ + Y +C G+L++ +V++AAHC + G++
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 129 RCDTSSKPESRFVIRAIV-GDF-TFSNFDNDIALLRL----NDRVPIVDIIKPVCLPTVL 182
T+ ++ + + I + F+ D+D+ L+RL + ++P+CLP
Sbjct: 60 FNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPG 119
Query: 183 NNTYEDETGVVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAG 241
+ + GWG L+E+ + +R+ VP++++ C + Y + IS NM+CAG
Sbjct: 120 STFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGA-DISPNMLCAG 178
Query: 242 YPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
Y + D+CQGDSGGP+ E ++ GI+SWG GCGR PGVYTR+ YV+WI ++
Sbjct: 179 YFDCKSDACQGDSGGPLACE-KNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237
Query: 302 SKEGCFL 308
+ L
Sbjct: 238 IRPPRRL 244
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 267 bits (684), Expect = 2e-88
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
++GG +N++ ++ + Y N CGGTLIN +VLTA HC +G + G ++
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDRGNMR----IYLGMHNL 55
Query: 130 CDTSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ RF + +D DI L+RLN V I P+ LP+ N
Sbjct: 56 KVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPS--NPPSV 113
Query: 188 DETGVVMGWG-TLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+MGWG + + + IL C+ + Y ++ +CAG EG
Sbjct: 114 GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAA--YK--GLAATTLCAGILEGG 169
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEK 301
KD+C+GDSGGP++ + GI+S G C + PG+YT++ Y +WI+
Sbjct: 170 KDTCKGDSGGPLI-----CNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSI 220
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 268 bits (687), Expect = 5e-88
Identities = 87/248 (35%), Positives = 131/248 (52%), Gaps = 17/248 (6%)
Query: 70 IVGGQPTEVNQYPWMVRLSYF------NRFYCGGTLINDRYVLTAAHCVKGRLW-FLIKA 122
I+GGQ +PWMV L F CGG+L+N +++LTAAHC + + +
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 123 TFGEYDRCDTSSKP-----ESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPV 176
FG + ++KP + R+V + I+ ++ S+ NDIAL+++ V I P
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120
Query: 177 CLPTVLNNTYEDETG-VVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRIS 234
CLP V GWG L+E+ R + ++++ V ++ C ++ Y+ RI
Sbjct: 121 CLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNG-RIR 179
Query: 235 DNMMCAGYPEGMKDSCQGDSGGPMV-FEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITR 293
+CAGYPEG D+CQGDSGGP++ + ++ Y +GI SWG GC RA PGVYT
Sbjct: 180 STNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWS 239
Query: 294 YVEWIKEK 301
Y+ WI K
Sbjct: 240 YLNWIASK 247
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 266 bits (683), Expect = 7e-88
Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 10/241 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRL-WFLIKATFGEYD 128
I GG Q+PW V ++Y CGG+L+++++VL+AAHC + G +
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
S + + I + DIALL+L+ + I+P+ LP +
Sbjct: 61 LDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN 120
Query: 188 DETGVVMGWGTLEESGR--PACIIRDVEVPILSNQYCRTSTNYSST-----RISDNMMCA 240
V GWG + S ++ +EVP++S + C + N + + ++M+CA
Sbjct: 121 GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCA 180
Query: 241 GYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
GY EG KD+CQGDSGGP+ + + GIVSWG CG PGVYT + Y WI+
Sbjct: 181 GYVEGGKDACQGDSGGPLSCP-VEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239
Query: 301 K 301
K
Sbjct: 240 K 240
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 263 bits (675), Expect = 4e-87
Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 17/234 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG N P+ V L +CGG+LIN ++V++AAHC K + GE +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQ----VRLGEDNI 55
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ ++IV + + +NDI L++L + + + LPT +
Sbjct: 56 NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPT--SCASAG 113
Query: 189 ETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
++ GWG + SG +++ ++ PILS+ C+++ Y +I+ NM CAGY EG K
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA--YPG-QITSNMFCAGYLEGGK 170
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
DSCQGDSGGP+V + GIVSWG+GC + PGVYT++ YV WIK+
Sbjct: 171 DSCQGDSGGPVV-----CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 219
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 263 bits (674), Expect = 5e-87
Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 19/238 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWF-LIKATFGEYD 128
IVGG+ V +YP+ V L CG +++++ VLTAAHCV G +K G
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 129 RCDTSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
S+ + + V ++ ND+AL+ L + + D+++P+ L T +
Sbjct: 61 L----SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTN-DEDL 115
Query: 187 EDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
E + GWG+ G ++++E+ + + C R+ D+ +C G
Sbjct: 116 ESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW----RVIDSHICTLTKRG- 170
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEKSKE 304
+ +C GDSGGP+V + QIGIVS+G+ C G P VYTR++ +V WI K+
Sbjct: 171 EGACHGDSGGPLV-----ANGAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK 222
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 263 bits (674), Expect = 7e-87
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 19/237 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN--RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEY 127
+VGG +N++P++V L +C G LIN +VLTAAHC + + G +
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIR----IKLGMH 56
Query: 128 DRCDTSSKPESRFVIRAIVG--DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
+ + + R + D DI L+RL V I PV LP+ +
Sbjct: 57 SKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPS--RSR 114
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
+MGWG + + P + + I+ +++C Y +CAG +G
Sbjct: 115 GVGSRCRIMGWGKISTTTYPD-VPHCTNIFIVKHKWCEPL--YPWVPADSRTLCAGILKG 171
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEK 301
+D+C GDSGGP++ E GIV+ G+ CG+ P VYT++ Y WI+
Sbjct: 172 GRDTCHGDSGGPLI-----CNGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSI 223
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 262 bits (671), Expect = 2e-86
Identities = 72/249 (28%), Positives = 115/249 (46%), Gaps = 28/249 (11%)
Query: 67 ATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
A V Q N PW V + FN++ CGG L++ +VLTAAHC + + G+
Sbjct: 1 AAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDK----YQVWLGK 56
Query: 127 YDRCDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIVDIIK 174
+ + + R V +AI ++ ND+ LLRL+ I D++K
Sbjct: 57 NNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVK 116
Query: 175 PVCLPTVLNNTYEDETGVVMGWGTLEES-GRPACIIRDVEVPILSNQYCRTSTNYSSTRI 233
P+ LPT T + GWG+ + ++ V + +L N+ C + ++
Sbjct: 117 PITLPT--EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEM---KV 171
Query: 234 SDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRIT 292
+D M+CAG +G +C+ DSGGP++ GI SWG CG P VYT++
Sbjct: 172 TDAMLCAGEMDGGSYTCEHDSGGPLI-----CDGILQGITSWGPEPCGEPTEPSVYTKLI 226
Query: 293 RYVEWIKEK 301
++ WI+E
Sbjct: 227 KFSSWIRET 235
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 262 bits (671), Expect = 3e-86
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 13/239 (5%)
Query: 69 RIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLW-FLIKATFGEY 127
I+GG+ + P+M + Y CGG LI+ ++VLTAAHC G +
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 128 DRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
+ ++ + + I T NDI L++L + +K + + + +
Sbjct: 62 SLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS--KTSL 119
Query: 187 EDETG-VVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNY-SSTRISDNMMCAGYP 243
T V GWG + RP+ +R+V V +LS + C + + Y I+ +M+CAG
Sbjct: 120 RSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDA 179
Query: 244 EGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRIT-RYVEWIKEK 301
+G KDSC+GD+GGP++ + IVS G CG A PG+YT +T +Y WIK
Sbjct: 180 KGQKDSCKGDAGGPLI-----CKGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 260 bits (668), Expect = 5e-86
Identities = 71/236 (30%), Positives = 114/236 (48%), Gaps = 17/236 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG N +P L + ++CGG+LI+ ++LTAAHC+ G + + G ++
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVL--GAHNI 58
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ + + V ++ NDIA++RL V + I V LP+ +
Sbjct: 59 REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPS--TDVGVG 116
Query: 189 ETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
GWG +S + ++R V+VPI+SN C Y ++D +C G K
Sbjct: 117 TVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV--YGI--VTDGNICIDSTGG-K 171
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCG-RAGYPGVYTRITRYVEWIKEKS 302
+C GDSGGP+ GI S+GA G AGYP +TR+T +++WI+ ++
Sbjct: 172 GTCNGDSGGPLN-----YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 260 bits (666), Expect = 8e-86
Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 17/234 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
+V G P + +P+ L CGG LI+ +VLTAAHC K ++ G+++
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPN----LQVFLGKHNL 56
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
S E V+RA++ D+ ++ D DI LLRL + ++I+P+ L + +
Sbjct: 57 RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLER--DCSANT 114
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
+ ++GWG + P I+ + ++S + C + +I+ NM+CAG + KD
Sbjct: 115 TSCHILGWGKTADGDFPD-TIQCAYIHLVSREECEHAYPG---QITQNMLCAGDEKYGKD 170
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEK 301
SCQGDSGGP+V G+VSWG CG PGVYT + RY WI++
Sbjct: 171 SCQGDSGGPLV-----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 259 bits (665), Expect = 1e-85
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 10/233 (4%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG+ E + P+M + CGG L+ +++VL+AAHC++ ++ G +
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 130 CDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
V+RA+ D D+D+ LL+L+++ + ++P+ V +
Sbjct: 61 SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
V GWG + +GR ++ V +P+L C T++ I++ +MCA +D
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDG-AITERLMCAE--SNRRD 177
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYVEWIKE 300
SC+GD+GGP+V G+V+ G+ CG PG+YTR+ Y WI
Sbjct: 178 SCKGDAGGPLV-----CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 259 bits (663), Expect = 2e-85
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+ G P +PW V L N+ +CGG L+N+R+VLTAAHC G
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYT----VHLGSDTL 56
Query: 130 CDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ + ++ ++ ND+ L++LN + + ++K V LP+
Sbjct: 57 --GDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS--RCEPPG 112
Query: 189 ETGVVMGWGTLEESGRPA-CIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMK 247
T V GWGT + V+V ++S Q C Y + ++M+CAG P+ K
Sbjct: 113 TTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV--YKD-LLENSMLCAGIPDSKK 169
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKE 300
++C GDSGGP+V R G+VSWG CG+ PGVYT++ ++ +WI +
Sbjct: 170 NACNGDSGGPLV-----CRGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWIND 218
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 259 bits (663), Expect = 5e-85
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 18/250 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNR-----FYCGGTLINDRYVLTAAHCVKGRLW-FLIKAT 123
I+GG+ T + PW + +R + CGG+LI+ +V++A HC
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 124 FGEYDRCDTSSKPESRFVIRAIV----GDFTFSNFDNDIALLRL----NDRVPIVDIIKP 175
G + V I+ T ++ NDIALL++ I+
Sbjct: 61 LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAH-HNDIALLKIRSKEGRCAQPSRTIQT 119
Query: 176 VCLPTVLNNTYEDETGVVMGWGTLEESGR-PACIIRDVEVPILSNQYCRTSTNYSSTRIS 234
+ LP++ N+ + + G+G + ++ V ++S++ C+ Y S ++
Sbjct: 120 ISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS-EVT 178
Query: 235 DNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRY 294
M+CA P+ DSCQGDSGGP+V + R GIVSWG GC PGVYTR++ +
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSLQG-RMTLTGIVSWGRGCALKDKPGVYTRVSHF 237
Query: 295 VEWIKEKSKE 304
+ WI+ +KE
Sbjct: 238 LPWIRSHTKE 247
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 258 bits (662), Expect = 5e-85
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 7/232 (3%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
+V G PT WMV L Y N+ CGG+LI + +VLTA C R +A G +D
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59
Query: 130 CDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDE 189
+ + + V + +D+ L++L + D + + LP + E
Sbjct: 60 HGRGDEKCKQVLN---VSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKT 116
Query: 190 TGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDS 249
+ V GWG ++R + I+ N+ C T ++++ +CAG +
Sbjct: 117 SCSVYGWGYTGLINYDG-LLRVAHLYIMGNEKCSQHHRGKVT-LNESEICAGAEKIGSGP 174
Query: 250 CQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
C+GD GGP+V E + +G++ G GC PG++ R+ Y +WI +
Sbjct: 175 CEGDYGGPLVCE-QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKI 225
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 258 bits (661), Expect = 8e-85
Identities = 80/248 (32%), Positives = 120/248 (48%), Gaps = 15/248 (6%)
Query: 61 CG-----ETNDATRIVGGQPTEVNQYPWMVRLSY-FNRFYCGGTLINDRYVLTAAHCVKG 114
CG R+VGG + +PW V L F +CGGTLI+ +VLTAAHC++
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
Query: 115 RLW-FLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDII 173
K G + + + V R + DIALL+L+ I D +
Sbjct: 64 SPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFL-----EPTRKDIALLKLSSPAVITDKV 118
Query: 174 KPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRI 233
P CLP+ + + GWG + A ++++ ++P++ N+ C + R+
Sbjct: 119 IPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPVIENKVCNRYEFLNG-RV 176
Query: 234 SDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITR 293
+CAG+ G DSCQGD+GGP+V E +Y G+ SWG GC R PGVY R++R
Sbjct: 177 QSTELCAGHLAGGTDSCQGDAGGPLVCF-EKDKYILQGVTSWGLGCARPNKPGVYVRVSR 235
Query: 294 YVEWIKEK 301
+V WI+
Sbjct: 236 FVTWIEGV 243
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 257 bits (660), Expect = 2e-84
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 19/254 (7%)
Query: 61 CG----ETNDATRIVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCV 112
CG + N + R+VGG+ + +PW + L Y R CGGTLI +VLTAAHC+
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 113 KG-RLWFLIKATFGEYDRCDTSSKPESRFVIRAIVG--DFTFSNFDNDIALLRLNDRVPI 169
+ + G+ + + I + NDIAL++L + V +
Sbjct: 61 SNTLTY---RVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVEL 117
Query: 170 VDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYS 229
D I+ CLP+ + +D V GWG L +G A ++ P++ C +
Sbjct: 118 GDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWG 177
Query: 230 STRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG--CGRAGYPGV 287
+ + + M+CAG +G+ +C GDSGGP+ + D +++ GIVS+G+G C P V
Sbjct: 178 T-TVKETMVCAGG-DGVISACNGDSGGPLNCQ-ADGQWDVRGIVSFGSGLSCNTFKKPTV 234
Query: 288 YTRITRYVEWIKEK 301
+TR++ Y++WI +K
Sbjct: 235 FTRVSAYIDWINQK 248
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 256 bits (656), Expect = 4e-84
Identities = 73/246 (29%), Positives = 117/246 (47%), Gaps = 29/246 (11%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG E + PW L +F+ F CGG L++ ++VLTAAHC+ + G ++
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDN----YQLWLGRHNL 56
Query: 130 CDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIV-DIIKPV 176
D + + V + ++ +D+ LLRL + + D +K V
Sbjct: 57 FDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVV 116
Query: 177 CLPTVLNNTYEDETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISD 235
LPT T + GWG++E ++ V++ IL N C+ + + +++D
Sbjct: 117 ELPT--EEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA--HVQ-KVTD 171
Query: 236 NMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWG-AGCGRAGYPGVYTRITRY 294
M+C G+ EG KD+C GDSGGP++ G+ SWG CG P V R+ Y
Sbjct: 172 FMLCVGHLEGGKDTCVGDSGGPLM-----CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSY 226
Query: 295 VEWIKE 300
V+WI++
Sbjct: 227 VKWIED 232
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 256 bits (657), Expect = 4e-84
Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 18/250 (7%)
Query: 61 CG------ETNDATRIVGGQPTEVNQYPWMVRLSYFNRF-YCGGTLINDRYVLTAAHCVK 113
CG + +RIV G+ +PW V L F +CGG+LIN+ +V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60
Query: 114 GRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDI 172
GE+D+ +S K + + + + +NDI LL+L+
Sbjct: 61 TTSD---VVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQT 117
Query: 173 IKPVCLPTVLNNTYEDETGVVMGWG-TLEESGRPACIIRDVEVPILSNQYCRTSTNYSST 231
+ VCLP+ ++ T V GWG T + ++ +P+LSN C+ + +
Sbjct: 118 VSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY--WGT- 174
Query: 232 RISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRI 291
+I D M+CAG SC GDSGGP+V + ++ + +GIVSWG+ PGVY R+
Sbjct: 175 KIKDAMICAG--ASGVSSCMGDSGGPLVCK-KNGAWTLVGIVSWGSSTCSTSTPGVYARV 231
Query: 292 TRYVEWIKEK 301
T V W+++
Sbjct: 232 TALVNWVQQT 241
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 255 bits (654), Expect = 6e-84
Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 25/242 (10%)
Query: 70 IVGGQPTEVNQYPWMVRLSYF----NRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
I+ G +P+ L R +CGG+LI+++++LTAAHCV + ++ G
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVV--YLG 58
Query: 126 EYDRCDTSSKPESRFVIRAIV--GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTV-- 181
+ + E+ I+ F + ND+AL+++ V D I+P+ LP+
Sbjct: 59 SAVQ----YEGEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEE 113
Query: 182 LNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAG 241
LNN +E+ V GWG I++ ++ N C Y I ++ +C
Sbjct: 114 LNNKFENIWATVSGWGQSNTDTV---ILQYTYNLVIDNDRCAQE--YPPGIIVESTICGD 168
Query: 242 YPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCG-RAGYPGVYTRITRYVEWIKE 300
+G K C GDSGGP V + IG+VS+ +G G +G P ++R+T Y++WI++
Sbjct: 169 TSDG-KSPCFGDSGGPFVL---SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQ 224
Query: 301 KS 302
+
Sbjct: 225 NT 226
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 254 bits (652), Expect = 1e-83
Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 18/232 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG+ Q+P++ + R +CGG LI+ R+V+TAA C + + + G YD
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 130 CDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ F I ++ + ND+ LL+L+ + + + LP
Sbjct: 61 RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
V GWG+ GR + R V V + CR N +C G
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR-----------PNNVCTGVLTRRGG 169
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
C GD G P+V G+ S+ G P +TR+ + +WI
Sbjct: 170 ICNGDGGTPLV-----CEGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDG 215
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 254 bits (652), Expect = 2e-83
Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 13/236 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG+ + P+M L CGG L++ ++VLTAAHC+ R+ ++ G +
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQ-LRLVLGLHTL 59
Query: 130 CDTSSKPESRFVIRAIVG--DF-TFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
P F I+A + + +ND+ALL+L+ +V I+P+ LP+
Sbjct: 60 ----DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVA 115
Query: 187 EDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+ GWG + GR + ++R++++ +L + C S ++ +S +M+C
Sbjct: 116 AGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG-SLSPSMVCLAADSKD 174
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYVEWIKEK 301
+ C+GDSGGP+V + G++S+ + C P V T + YV WI++
Sbjct: 175 QAPCKGDSGGPLVCGK---GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKV 227
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 253 bits (648), Expect = 3e-83
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 18/233 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG+ + +P+MV L +CG TLI +V++AAHCV ++ G ++
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 130 CDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDE 189
+ V R + N NDI +L+LN I ++ LP
Sbjct: 61 SRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV 120
Query: 190 TGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDS 249
+ MGWG L + A +++++ V ++++ CR + +C
Sbjct: 121 QCLAMGWGLLGRNRGIASVLQELNVTVVTSL-CR-----------RSNVCTLVRGRQAGV 168
Query: 250 CQGDSGGPMVFEREDSRYEQIGIVSWG-AGCGRAGYPGVYTRITRYVEWIKEK 301
C GDSG P+V GI S+ GC YP + + ++V WI
Sbjct: 169 CFGDSGSPLV-----CNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 253 bits (648), Expect = 6e-83
Identities = 65/236 (27%), Positives = 106/236 (44%), Gaps = 13/236 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG + P+MV LS + C G LI +VLTAAHC + + G +
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRS---QVILGAHSI 57
Query: 130 CDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
+ V + + + + D+ LL+L ++ I + + LP ++
Sbjct: 58 TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYS-STRISDNMMCAGYPEGMK 247
V GWG S + +R+VE+ I+ + C +Y+ + I NM+CAG G +
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177
Query: 248 DSCQGDSGGPMVFEREDSRYEQIGIVSWGA--GCGRAGYPGVYTRIT-RYVEWIKE 300
DSC GDSG P++ G+ S+G CG PGVY ++ +++ WI
Sbjct: 178 DSCNGDSGSPLL-----CEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 250 bits (642), Expect = 4e-82
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 20/237 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSY-FNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
I+ G +++ PW L N+ YCG L++ +++LTAAHC K + G Y
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKV----FRVRLGHYS 56
Query: 129 RCDTSSKPESRFVIRAIVG--DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
+ F + ++ ND+ L++LN R+ ++P+ + + +
Sbjct: 57 LSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSS--HCPS 114
Query: 187 EDETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
+V GWGT + +++ + + +LS + C + Y +I D M CAG G
Sbjct: 115 AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA--YPR-QIDDTMFCAGDKAG 171
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEK 301
+DSCQGDSGGP+V G+VSWG C R PGVYT + ++ +WI+E
Sbjct: 172 -RDSCQGDSGGPVV-----CNGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQET 222
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 250 bits (641), Expect = 4e-82
Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+ G+ + PW L N +C G L++ ++VL+AAHC + G +
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNS----YTIGLGLHSL 56
Query: 130 CDTSSKPES----RFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
+ E ++ ++ ND+ L++L++ V D I+ + + +
Sbjct: 57 ---EADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIAS--QC 111
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ +V GWG L P +++ V V ++S + C Y +M CAG +
Sbjct: 112 PTAGNSCLVSGWGLLANGRMPT-VLQCVNVSVVSEEVCSKL--YDP-LYHPSMFCAGGGQ 167
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYVEWIKE 300
KDSC GDSGGP++ G+VS+G CG+ G PGVYT + ++ EWI++
Sbjct: 168 DQKDSCNGDSGGPLI-----CNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEK 219
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 250 bits (641), Expect = 7e-82
Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
+VGG+ N +PW V L Y + R CGGTL++ +VLTAAHC+ + + G
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTY--RVVLG 58
Query: 126 EYDRCDTSSKPESRFVIRAIVG---DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVL 182
+ + V + +V + + NDIALL+L V + D I+ CLP
Sbjct: 59 RHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAG 118
Query: 183 NNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGY 242
+ V GWG L+ +G I++ ++ ++ C + S + NM+CAG
Sbjct: 119 TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGS-TVKTNMICAGG 177
Query: 243 PEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA--GCGRAGYPGVYTRITRYVEWIKE 300
+G+ SC GDSGGP+ + + +++ GIVS+G+ GC P V+TR++ Y++WI
Sbjct: 178 -DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS 236
Query: 301 K 301
Sbjct: 237 V 237
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 248 bits (637), Expect = 2e-81
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 17/235 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN---RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
I+GG + + P+M L ++ CGG LI D +VLTAAHC I T G
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSS----INVTLGA 56
Query: 127 YDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
++ + + V R I + NF NDI LL+L + ++P+ LP+
Sbjct: 57 HNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV 116
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
+T V GWG G+ + +++V++ + ++ C + S +C G PE
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESD--LRHYYDSTIELCVGDPEI 174
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
K S +GDSGGP+V GIVS+G G P T+++ +V WIK+
Sbjct: 175 KKTSFKGDSGGPLV-----CNKVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKK 222
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 248 bits (636), Expect = 3e-81
Identities = 77/237 (32%), Positives = 111/237 (46%), Gaps = 21/237 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+ G+ + PW L R CGG L+ DR+VLTAAHC K + G++
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQK----YSVRLGDHSL 56
Query: 130 CDTSSKPESRFVIRAIV----GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
+ V ++I + + +DI L+RL + + D +KPV L
Sbjct: 57 QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLAN--LCP 114
Query: 186 YEDETGVVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ ++ GWGT+ + EV I S C + Y +I++ M+CAG
Sbjct: 115 KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA--YPG-KITEGMVCAGSSN 171
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYVEWIKE 300
G D+CQGDSGGP+V GI SWG+ CG+ PGVYT+I RY WIK+
Sbjct: 172 G-ADTCQGDSGGPLV-----CDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKK 222
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 248 bits (635), Expect = 6e-81
Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 14/241 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
+VGG + N +P + L Y + CGGTLI +V+TAAHCV L F + G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTF--RVVVG 58
Query: 126 EYDRCDTSSKPESRFVIRAIVG---DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVL 182
E++ + + V + +V + DIALLRL V + ++ LP
Sbjct: 59 EHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG 118
Query: 183 NNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGY 242
+ + GWG +G+ A ++ +P + C +S+ + S + ++M+CAG
Sbjct: 119 TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGS-TVKNSMVCAGG 177
Query: 243 PEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA--GCGRAGYPGVYTRITRYVEWIKE 300
+G++ CQGDSGGP+ + +Y G+ S+ + GC P V+TR++ Y+ WI
Sbjct: 178 -DGVRSGCQGDSGGPLHCL-VNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN 235
Query: 301 K 301
Sbjct: 236 V 236
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 248 bits (635), Expect = 7e-81
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFY---CGGTLINDRYVLTAAHCVKGRLW--FLIKATF 124
IVGGQ +++PW V L +R++ CGG+LI+ ++VLTAAHCV + ++
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 125 GEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLN 183
E + + V R IV F DIALL L + V I + V LP
Sbjct: 61 REQHL---YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE 117
Query: 184 NTYEDETGVVMGWGTLEESGR--PACIIRDVEVPILSNQYCRTSTNYSST------RISD 235
V GWG ++ P ++ V+VPI+ N C + + I D
Sbjct: 118 TFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRD 177
Query: 236 NMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYV 295
+M+CAG +DSCQGDSGGP+V + + + Q G+VSWG GC + PG+YTR+T Y+
Sbjct: 178 DMLCAGN--SQRDSCQGDSGGPLVCK-VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 296 EWIKEK 301
+WI
Sbjct: 235 DWIHHY 240
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 246 bits (631), Expect = 1e-80
Identities = 60/236 (25%), Positives = 101/236 (42%), Gaps = 21/236 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSY---FNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
IVGG + + P+M L +CGGTLI+ +VLTAAHC++ L+ G
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 127 YDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
++ + V + + ++ N NDI L++L+ + + V LP
Sbjct: 61 HNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVP 120
Query: 187 EDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+ MGWG + PA +++++ V +++ + +C P
Sbjct: 121 HGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFF------------CRPHNICTFVPRRK 168
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYVEWIKEK 301
C GDSGGP++ GI S+ GC +P +TR+ YV+WI+
Sbjct: 169 AGICFGDSGGPLI-----CDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 246 bits (631), Expect = 2e-80
Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
+VGG E N PW V + Y CGG L++ +VLTAAHC + + G+
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQ----YEVWLGKNKL 56
Query: 130 CDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIVDIIKPVC 177
+ R V ++ ++F +D+ LLRL+ I D++KP+
Sbjct: 57 FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIA 116
Query: 178 LPTVLNNTYEDETGVVMGWGTLEESGRP-ACIIRDVEVPILSNQYCRTSTNYSSTRISDN 236
LPT + GWG++ + ++ V + +L N+ C Y +++D
Sbjct: 117 LPT--KEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKV--YLQ-KVTDV 171
Query: 237 MMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRITRYV 295
M+CAG G KD+C+ DSGGP++ G S+G CG+ G P +YT + ++
Sbjct: 172 MLCAGEMGGGKDTCRDDSGGPLI-----CDGILQGTTSYGPVPCGKPGVPAIYTNLIKFN 226
Query: 296 EWIKE 300
WIK+
Sbjct: 227 SWIKD 231
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 245 bits (627), Expect = 7e-80
Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 30/246 (12%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG E N PW V + N + CGG LI+ +V+TAAHC + G +
Sbjct: 1 IVGGYKCEKNSQPWQVAV--INEYLCGGVLIDPSWVITAAHCYSNN----YQVLLGRNNL 54
Query: 130 CDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIVDIIKPVC 177
+ R V ++ + + ND+ LL L++ I +K +
Sbjct: 55 FKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVID 114
Query: 178 LPTVLNNTYEDETGVVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRISDN 236
LPT T + GWG+ S + ++ V + +LSN+ C + ++D
Sbjct: 115 LPT--KEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD---NVTDV 169
Query: 237 MMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRITRYV 295
M+CAG EG KD+C GDSGGP++ GI S GA C + P +Y ++ ++
Sbjct: 170 MLCAGEMEGGKDTCAGDSGGPLI-----CDGVLQGITSGGATPCAKPKTPAIYAKLIKFT 224
Query: 296 EWIKEK 301
WIK+
Sbjct: 225 SWIKKV 230
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 244 bits (626), Expect = 1e-79
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 14/235 (5%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN-RFYCGGTLINDRYVLTAAHCVKGRLWFL--IKATFGE 126
+VGG P PW V L + +CGG+L+ ++++LTA C L + G
Sbjct: 1 VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 127 YDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTY 186
+ + + + R V + + LL+L V + + +CLP
Sbjct: 58 LFQ---NPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVP 114
Query: 187 EDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
+ GWG + +G ++ + ++SNQ C R+ ++ MC
Sbjct: 115 PGTKCEIAGWGETKGTGNDT-VLNVALLNVISNQECNIKHRG---RVRESEMCTEGLLAP 170
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
+C+GD GGP+ + + GI+ C R+ +P V+TR++ +V+WI +
Sbjct: 171 VGACEGDYGGPLACF-THNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKV 224
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 246 bits (630), Expect = 3e-79
Identities = 43/251 (17%), Positives = 81/251 (32%), Gaps = 20/251 (7%)
Query: 56 MCDCSCGETNDATRIVGGQPTEVNQYPWMVRL-SYFNRFYCGGTLINDRYVLTAAHCVKG 114
+ + ++ PW V+L + + +CGG +I + +VLT A C
Sbjct: 80 KQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLL 139
Query: 115 RLWFLIKATFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDII 173
+K F TS P + V + +ND++LL L +
Sbjct: 140 HRNITVKTYFN-----RTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAG 194
Query: 174 KPVCLPTVLNNTYEDETG---VVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSS 230
PVC P + ++ GW + V ++ + C N
Sbjct: 195 LPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNV-- 250
Query: 231 TRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTR 290
++ C + G + E + G++ G + + T+
Sbjct: 251 -TVTTRTYCER---SSVAAMHWMDGSVVTREHRG-SWFLTGVLGSQ-PVGGQAHMVLVTK 304
Query: 291 ITRYVEWIKEK 301
++RY W K+
Sbjct: 305 VSRYSLWFKQI 315
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 244 bits (625), Expect = 7e-79
Identities = 46/269 (17%), Positives = 87/269 (32%), Gaps = 34/269 (12%)
Query: 52 EDYPMCDCSCG--------------ETNDATRIVGGQPTEVNQYPWMVRL-SYFNRFYCG 96
++ C C+ G + + ++ PW V+L + + +CG
Sbjct: 21 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCG 80
Query: 97 GTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIV-GDFTFSNFD 155
G +I + +VLT A C +K F TS P + V + +
Sbjct: 81 GVIIRENFVLTTAKCSLLHRNITVKTYFN-----RTSQDPLMIKITHVHVHMRYDADAGE 135
Query: 156 NDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETG---VVMGWGTLEESGRPACIIRDV 212
ND++LL L + PVC P + ++ GW +
Sbjct: 136 NDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTR 193
Query: 213 EVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGI 272
V ++ + C N ++ C + G + E + G+
Sbjct: 194 PVTLVEGEECGQVLNV---TVTTRTYCER---SSVAAMHWMDGSVVTREHRG-SWFLTGV 246
Query: 273 VSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
+ G + + T+++RY W K+
Sbjct: 247 LGSQ-PVGGQAHMVLVTKVSRYSLWFKQI 274
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 242 bits (619), Expect = 1e-78
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 17/242 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKG-RLWFLIKATF 124
+VGG+ + N +PW + L Y + CGG+LI +V+TAAHCV R W +
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTW---RVVL 57
Query: 125 GEYDRCDTSSKPESRFVIRAIVG---DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTV 181
GE++ K + V + + DIALLRLN + + ++ LP
Sbjct: 58 GEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPS 117
Query: 182 LNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAG 241
+ + GWG G + ++ +P + + C +S + S + M+CAG
Sbjct: 118 NQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGS-TVKTTMVCAG 176
Query: 242 YPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSW--GAGCGRAGYPGVYTRITRYVEWIK 299
G C GDSGGP+ + + Y G+ S+ +GC + P V+TR++ Y+ W+
Sbjct: 177 --GGANSGCNGDSGGPLNCQ-VNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN 233
Query: 300 EK 301
Sbjct: 234 GI 235
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 242 bits (619), Expect = 1e-78
Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 34/248 (13%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
IVGG E + PW V ++ R CGG L++ ++VLTAAHC++ + G +
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNK----SVILLGRHSL 56
Query: 130 CDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIVDIIKPVC 177
+ V + + +D+ LLRL++ + D +K +
Sbjct: 57 FHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMD 116
Query: 178 LPTVLNNTYEDETG---VVMGWGTLEESG-RPACIIRDVEVPILSNQYCRTSTNYSSTRI 233
LP T E G GWG++E ++ V++ ++SN C ++
Sbjct: 117 LP-----TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ---KV 168
Query: 234 SDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA-GCGRAGYPGVYTRIT 292
+ M+CAG G K +C GDSGGP+V GI SWG+ C P +YT++
Sbjct: 169 TKFMLCAGRWTGGKSTCSGDSGGPLV-----CNGVLQGITSWGSEPCALPERPSLYTKVV 223
Query: 293 RYVEWIKE 300
Y +WIK+
Sbjct: 224 HYRKWIKD 231
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 239 bits (613), Expect = 7e-78
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 20/236 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
I+GG + + P+M L R CGG LI+ ++VLTAAHC I G
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGRE----ITVILG 56
Query: 126 EYDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
+D S + V + I+ + +DI LL+L +V + + V LP+ +
Sbjct: 57 AHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF 116
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ GWG + +R+VE+ I+ + C Y +C G P
Sbjct: 117 IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY----EYKFQVCVGSPT 172
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
++ + GDSGGP++ GIVS+G + P ++TR++ YV WI
Sbjct: 173 TLRAAFMGDSGGPLL-----CAGVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINA 221
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 239 bits (612), Expect = 1e-77
Identities = 72/235 (30%), Positives = 107/235 (45%), Gaps = 18/235 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN---RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
I+GG + + P+M L + CGG L+ + +VLTAAHC+ I T G
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSS----INVTLGA 56
Query: 127 YDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
++ + + V R I D+ NDI LL+L + I D + P+ LP L
Sbjct: 57 HNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEV 116
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
V GWG L + +++V++ + S + C + + I +CAG P
Sbjct: 117 KPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIAR--FKN-YIPFTQICAGDPSK 173
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
K+S GDSGGP+V GIVS+G G P VYTRI+ ++ WI
Sbjct: 174 RKNSFSGDSGGPLV-----CNGVAQGIVSYGRNDGT--TPDVYTRISSFLSWIHS 221
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 239 bits (612), Expect = 1e-77
Identities = 63/235 (26%), Positives = 102/235 (43%), Gaps = 19/235 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN---RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGE 126
I+GG+ + + P+M L + + CGG L+ + +VLTAAHC I T G
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSN----INVTLGA 56
Query: 127 YDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNT 185
++ + + RAI + NDI LL+L+ RV + PV LP
Sbjct: 57 HNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL 116
Query: 186 YEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
V GWG + +R+V++ + ++ C + +C G
Sbjct: 117 RPGTLCTVAGWGRVSMRRGTD-TLREVQLRVQRDRQCL---RIFGSYDPRRQICVGDRRE 172
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
K + +GDSGGP++ GIVS+G G P V+TR++ ++ WI+
Sbjct: 173 RKAAFKGDSGGPLL-----CNNVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRT 220
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 239 bits (612), Expect = 2e-77
Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 34/249 (13%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG E + PW V + + F CGG L++ ++VLTAAHC+ + G ++
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDD----YQIWLGRHNL 56
Query: 130 CDTSSKPESRFVIRAIV------------GDFTFSNFDNDIALLRLNDRVPIVDIIKPVC 177
+ V + + + + +D+ LLRL I D +K +
Sbjct: 57 SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILD 116
Query: 178 LPTVLNNTYEDETG---VVMGWGTLEES-GRPACIIRDVEVPILSNQYCRTSTNYSSTRI 233
LP T E + G GWG + R + ++ VE+ + SN+ C + Y ++
Sbjct: 117 LP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARA--YPE-KM 168
Query: 234 SDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG-CGRAGYPGVYTRIT 292
++ ++CA + + C GDSGG ++ GI SWG C V+T++
Sbjct: 169 TEFVLCATHRDDSGSICLGDSGGALI-----CDGVFQGITSWGYSECADFNDNFVFTKVM 223
Query: 293 RYVEWIKEK 301
+ +WIKE
Sbjct: 224 PHKKWIKET 232
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 238 bits (610), Expect = 2e-77
Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 18/236 (7%)
Query: 70 IVGGQPTEVNQYPWMVRLSYF----NRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
I+GG + P+M + + +CGG L+ D++VLTAAHC + T G
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRS----MTVTLG 56
Query: 126 EYDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
++ + V +AI D+ + NDI LL+L ++P+ LP +
Sbjct: 57 AHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAH 116
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ V GWG + G + +V++ + +Q C + + S+ N +C G +
Sbjct: 117 VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQ--FQSSYNRANEICVGDSK 174
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
S + DSGGP+V + GIVS+G G P V+TR+ +V WIK+
Sbjct: 175 IKGASFEEDSGGPLV-----CKRAAAGIVSYGQTDGS--APQVFTRVLSFVSWIKK 223
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 247 bits (631), Expect = 4e-77
Identities = 59/299 (19%), Positives = 106/299 (35%), Gaps = 44/299 (14%)
Query: 54 YPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYF----NRFYCGGTLINDRYVLTAA 109
Y M D S + + T+ ++ PW ++S C G ++++ +VLTAA
Sbjct: 199 YQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAA 258
Query: 110 HCVKGRL-WFLIKATFGEYDRCDTSSK--PESRFVIRAIVGDFTFSNFDNDIALLRLNDR 166
HC IK + G R + I +D D+AL++L ++
Sbjct: 259 HCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNK 318
Query: 167 VPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEE------------SGRPACIIRDVEV 214
+ I+P+CLP T +E + EV
Sbjct: 319 LKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV 378
Query: 215 PILSNQYCRT------------STNYSSTRISDNMMCAGYPEGM--KDSCQGDSGGPMVF 260
I + + S ++ +C G ++C+GDSGGP++
Sbjct: 379 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV 438
Query: 261 EREDSRYEQIGIVSWGA--GCGRAG--------YPGVYTRITRYVEWIKEKSKEGCFLF 309
+ R+ Q+G++SWG C + + + + W+KEK ++ F
Sbjct: 439 HKRS-RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGF 496
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 236 bits (605), Expect = 1e-76
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 20/236 (8%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG 125
I+GG + + P+M L +CGG LI +VLTAAHC I T G
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRS----ITVTLG 56
Query: 126 EYDRCDTSSKPESRFVIRAIVG-DFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
++ + + VI+ + S +DI LL+L ++ + + + P+ N
Sbjct: 57 AHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF 116
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
V GWG + +++V++ ++ Q C ++ + +C G P
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC----SHFRDFDHNLQLCVGNPR 172
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYVEWIKE 300
K + +GDSGGP++ GIVS+G + P V+TRI+ Y WI +
Sbjct: 173 KTKSAFKGDSGGPLL-----CAGVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQ 221
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 235 bits (601), Expect = 9e-76
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 16/240 (6%)
Query: 73 GQPTEVNQYPWMVRLSYFN----RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
G+ + W V L Y CGG+LI +V+TA HC+ + GEYD
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR--TYQVVLGEYD 59
Query: 129 RCDTSSKPESRFVIRAIV-----GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLN 183
R + + + + NDIAL++L+ + D ++ LP +
Sbjct: 60 RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD 119
Query: 184 NTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYP 243
+ + GWG L G ++ +P + ++C + + M+CAG
Sbjct: 120 ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI-TVKKTMVCAGG- 177
Query: 244 EGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGA--GCGRAGYPGVYTRITRYVEWIKEK 301
+ C GDSGGP+ D ++ G+ S+ + GC P V+TR++ +++WI E
Sbjct: 178 -DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 236
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 242 bits (620), Expect = 2e-75
Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 53/296 (17%)
Query: 55 PMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKG 114
+ D CG + ++ + PW V + ++ C G LI+D++VLTAAHC +
Sbjct: 214 KLTDTICG-----VGNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRD 268
Query: 115 RL-WFLIKATFGEYDRCDTSSKPESRFVI------RAIVGDFTFSNFDNDIALLRLNDRV 167
L + G+ + VI A + +DIALL+L +V
Sbjct: 269 GNDHSLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKV 328
Query: 168 PIVDIIKPVCLPTVLNNTYEDE-----TGVVMGWGTLEESGRPAC--IIRDVEVPI---- 216
+ +P+CLP + T L + PA + ++ I
Sbjct: 329 KMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKM 388
Query: 217 -LSNQYCR----------TSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDS 265
+ C + ++D +C+G E + C+G+SGG + ER
Sbjct: 389 GVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESGGAVFLERRF- 446
Query: 266 RYEQIGIVSWG-----AGCGRAG------------YPGVYTRITRYVEWIKEKSKE 304
R+ Q+G+VSWG G + + R W+++ +
Sbjct: 447 RFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD 502
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 229 bits (585), Expect = 2e-68
Identities = 62/303 (20%), Positives = 107/303 (35%), Gaps = 49/303 (16%)
Query: 53 DYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRLSYF----NRFYCGGTLINDRYVLTA 108
D CG + T+ ++ PW ++S C G ++++ +VLTA
Sbjct: 445 DESQSLSLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTA 499
Query: 109 AHCVKGRL-WFLIKATFGEYDRCDTSSK--PESRFVIRAIVGDFTFSNFDNDIALLRLND 165
AHC IK + G R + I +D D+AL++L +
Sbjct: 500 AHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKN 559
Query: 166 RVPIVDIIKPVCLPTVLNNTYEDE-----TGVVMGWGTLEESGRPACII-------RDVE 213
++ I+P+CLP T T L A + E
Sbjct: 560 KLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE 619
Query: 214 VPILSNQYCRT------------STNYSSTRISDNMMCAGYPEGM--KDSCQGDSGGPMV 259
V I + + S ++ +C G ++C+GDSGGP++
Sbjct: 620 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLI 679
Query: 260 FEREDSRYEQIGIVSWGA--GCGR--------AGYPGVYTRITRYVEWIKEKSKEGCFLF 309
+ R+ Q+G++SWG C A + + + + W+KEK ++ F
Sbjct: 680 VHKRS-RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGF 738
Query: 310 FVA 312
A
Sbjct: 739 LAA 741
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 224 bits (571), Expect = 5e-66
Identities = 79/256 (30%), Positives = 121/256 (47%), Gaps = 10/256 (3%)
Query: 48 PSAKEDYPMCDCSCGETNDATRIVGGQPTEVNQYPWMVRL-SYFNRFYCGGTLINDRYVL 106
A + R+VGG + +PW V L + F +CGGTLI+ +VL
Sbjct: 540 QCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVL 599
Query: 107 TAAHCVKGRLW-FLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLND 165
TAAHC++ K G + + + V R + DIALL+L+
Sbjct: 600 TAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPT-----RKDIALLKLSS 654
Query: 166 RVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTS 225
I D + P CLP+ + + GWG + + ++++ ++P++ N+ C
Sbjct: 655 PAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAG-LLKEAQLPVIENKVCNRY 713
Query: 226 TNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYP 285
+ R+ +CAG+ G DSCQGDSGGP+V E +Y G+ SWG GC R P
Sbjct: 714 EFLNG-RVQSTELCAGHLAGGTDSCQGDSGGPLVCF-EKDKYILQGVTSWGLGCARPNKP 771
Query: 286 GVYTRITRYVEWIKEK 301
GVY R++R+V WI+
Sbjct: 772 GVYVRVSRFVTWIEGV 787
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 178 bits (455), Expect = 3e-55
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 153 NFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESG---RPACII 209
++ +D+ LLRL I D +K + LPT T GWG++E I
Sbjct: 5 DYSHDLMLLRLQSPAKITDAVKVLELPT--QEPELGSTCEASGWGSIEPGPDDFEFPDEI 62
Query: 210 RDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQ 269
+ V++ +L N +C + + +++++M+CAGY G KD+C GDSGGP++
Sbjct: 63 QCVQLTLLQNTFCADA--HPD-KVTESMLCAGYLPGGKDTCMGDSGGPLI-----CNGMW 114
Query: 270 IGIVSWGAG-CGRAGYPGVYTRITRYVEWIKEK 301
GI SWG CG A P +YT++ Y++WI +
Sbjct: 115 QGITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 138 bits (349), Expect = 2e-40
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 212 VEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIG 271
+P+LSN C+ + + +I D M+CAG SC GDSGGP+V + ++ + +G
Sbjct: 10 ASLPLLSNTNCKKY--WGT-KIKDAMICAG--ASGVSSCMGDSGGPLVCK-KNGAWTLVG 63
Query: 272 IVSWGAGCGRAGYPGVYTRITRYVEWIKEK 301
IVSWG+ PGVY R+T V W+++
Sbjct: 64 IVSWGSSTCSTSTPGVYARVTALVNWVQQT 93
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 117 bits (295), Expect = 5e-32
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFN-RFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYD 128
IV G+ +PW V L +CGG+LIN+ +V+TAAHC GE+D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSD---VVVAGEFD 57
Query: 129 RCDTSSKPESRFVIRAIV-GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYE 187
+ +S K + + + + +NDI LL+L+ + VCLP+ ++
Sbjct: 58 QGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAA 117
Query: 188 DETGVVMGWGTL 199
T V GWG
Sbjct: 118 GTTCVTTGWGLT 129
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 93.9 bits (233), Expect = 2e-22
Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 42/246 (17%)
Query: 70 IVGG-----QPTEVNQYPW--MVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKA 122
+V G + P+ + + F C GTLI +LT HCV A
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYI-TFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSA 59
Query: 123 TFGEYDRCDTSSKPESRFVIRAIV---GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLP 179
Y + S+ + G D A+++ + I + + +
Sbjct: 60 KGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDT--NIGNTVGYRSIR 117
Query: 180 TVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMC 239
T + G+ + + Q+ + +
Sbjct: 118 Q--VTNLTGTTIKISGYP----GDKMRSTGKVS-------QWEMSGSVTREDTNLAYYTI 164
Query: 240 AGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRIT-RYVEWI 298
D+ G+SG M+ D + +G+ + G G + T +VE+I
Sbjct: 165 --------DTFSGNSGSAML----DQNQQIVGVHNAGYSNGTING---GPKATAAFVEFI 209
Query: 299 KEKSKE 304
+
Sbjct: 210 NYAKAQ 215
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 81.0 bits (201), Expect = 2e-19
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
I+GG+ E N +PW V + +++ F CGG L+N ++VLTAAHC + G ++
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDN----YEVWLGRHNL 56
Query: 130 CDTSSKPES----RFVIRAIV 146
+ E+ V
Sbjct: 57 ----FENENTAQFFGVTADFP 73
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 62.8 bits (152), Expect = 1e-11
Identities = 34/224 (15%), Positives = 59/224 (26%), Gaps = 37/224 (16%)
Query: 79 NQYPWMV--RLSYFN---RFYCGGTLIND---RYVLTAAHCV---KGRLWFLIKATFGEY 127
N ++ + F C ++ V TA HC+ G + Y
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAY 61
Query: 128 DRCDTSSKPESRFVIRAIVGDFTFSN---FDNDIALLRLNDRVPIVDIIKPVCLPTVLNN 184
D + +V ++N F++D A L + + + N
Sbjct: 62 DY---GESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFN 118
Query: 185 TYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPE 244
+ G+ PA + + C + S +
Sbjct: 119 QPRGQYYSAYGY--------PAAAPFNGQEL----HSCHGTATNDPMGSSTQGIPC---- 162
Query: 245 GMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVY 288
+ G SGGP F + Q S+G G Y
Sbjct: 163 ---NMTGGSSGGP-WFLGNGTGGAQNSTNSYGYTFLPNVMFGPY 202
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 61.6 bits (148), Expect = 7e-11
Identities = 39/230 (16%), Positives = 62/230 (26%), Gaps = 42/230 (18%)
Query: 84 MVRLSYFNRFYCGGTLINDR------YVLTAAHCVKGRLWFLIKATFG---EYDRCDTSS 134
+ S C G+L+N+ Y LTA HC G + C +
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84
Query: 135 KPESRFVIRAIV------GDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
P S + + +D LL LN+
Sbjct: 85 TPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAAN------------------PA 126
Query: 189 ETGVVMGWGTLEESGRPACII--RDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGM 246
GW +++ A I +V +SN TS + +
Sbjct: 127 FNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSG 186
Query: 247 KDSCQGDSGGPMVFEREDSRYEQIGIVSWG-AGCGRAG--YPGVYTRITR 293
+ G SG P+ +G + G + C G Y R+
Sbjct: 187 GVTEPGSSGSPIY----SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVFT 232
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 55.8 bits (134), Expect = 5e-09
Identities = 32/253 (12%), Positives = 71/253 (28%), Gaps = 55/253 (21%)
Query: 64 TNDATRIVGGQPTEVNQYPW--MVRL---SYFNRFYCGGTLINDRYVLTAAHCVKGRLWF 118
ND +I T+ + + + + F G ++ +LT H V
Sbjct: 5 NNDRHQI-----TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGD 59
Query: 119 LIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCL 178
+ + P F I + + D+A+++ +
Sbjct: 60 PHALKA-FPSAINQDNYPNGGFTAEQITK----YSGEGDLAIVKFS-------------- 100
Query: 179 PTVLNNTYEDETGVV-MGWGTLEESGRPACII---RDVEVPILSNQYCRTSTNYSSTRIS 234
P N + M + + + D V + + + +
Sbjct: 101 PNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKPVATMWESKGKITY------LK 154
Query: 235 DNMM---CAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRI 291
M + G+SG P+ + + E IGI G G + +
Sbjct: 155 GEAMQYDLSTTG--------GNSGSPVF----NEKNEVIGIHWGGVPNEFNGAVFINENV 202
Query: 292 TRYV-EWIKEKSK 303
++ + I++ +
Sbjct: 203 RNFLKQNIEDINF 215
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 51.4 bits (122), Expect = 1e-07
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 18/125 (14%)
Query: 64 TNDATRIVGGQPTEVNQYPW--MVRLSYFN---RFYCGGTLINDRYVLTAAHCVKGRLWF 118
ND +I T+ + + + F G ++ +LT H V
Sbjct: 5 NNDRHQI-----TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGD 59
Query: 119 LIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRV---PIVDIIKP 175
+ + P F I + + D+A+++ + I +++KP
Sbjct: 60 PHALKAFPS-AINQDNYPNGGFTAEQITK----YSGEGDLAIVKFSPNEQNKHIGEVVKP 114
Query: 176 VCLPT 180
+
Sbjct: 115 ATMSN 119
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 47.1 bits (112), Expect = 2e-06
Identities = 38/209 (18%), Positives = 63/209 (30%), Gaps = 47/209 (22%)
Query: 89 YFNRFYC----GGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRA 144
Y + C + Y LTA HC G ++ +
Sbjct: 8 YSSTGRCSLGFNVRSGSTYYFLTAGHCTDG------------------ATTWWANSARTT 49
Query: 145 IVGDFTFSNF-DNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESG 203
++G + S+F +ND ++R + D T N G T SG
Sbjct: 50 VLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTGTHSG 109
Query: 204 RPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFERE 263
+ + + NY + M+ + GDSGGP+
Sbjct: 110 ----SVTALNATV----------NYGGGDVVYGMI-----RTNVCAEPGDSGGPLYSGTR 150
Query: 264 DSRYEQIGIVSWGAGCGRAGYPGVYTRIT 292
IG+ S G+G +G + +T
Sbjct: 151 A-----IGLTSGGSGNCSSGGTTFFQPVT 174
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 47.6 bits (113), Expect = 2e-06
Identities = 30/217 (13%), Positives = 56/217 (25%), Gaps = 55/217 (25%)
Query: 76 TEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCD---- 131
+ Y + + G LI ++T H + F D
Sbjct: 31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKN 90
Query: 132 TSSKPESRFVIRAIVGDFTFSNFDNDIALLRLN---DRVPIVDIIKPVCLPTVLNNTYED 188
P +F I D+A+++L D+I+P D
Sbjct: 91 EFPTPYGKFEAEEIKESPY--GQGLDLAIIKLKPNEKGESAGDLIQPA--------NIPD 140
Query: 189 ETGVVMGWGTLEE-------SGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAG 241
+ G ++ A + ++ + ++ T
Sbjct: 141 HIDIAKG----DKYSLLGYPYNYSAYSLYQSQIEMFNDSQYFGYTE-------------- 182
Query: 242 YPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAG 278
G+SG + + + E IGI S G
Sbjct: 183 ---------VGNSGSGIF----NLKGELIGIHSGKGG 206
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 45.6 bits (108), Expect = 6e-06
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 61/201 (30%)
Query: 103 RYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNF-DNDIALL 161
RY +TA HC S S ++VG ++F ND ++
Sbjct: 26 RYFVTAGHCTNI-------------------SANWSASSGGSVVGVREGTSFPTNDYGIV 66
Query: 162 RLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQY 221
R D + + Y T + ++
Sbjct: 67 RYTDGSSPAGTV----------DLYNGSTQDISSAA----------------NAVVGQAI 100
Query: 222 CRT--STNYSSTRISDNMMCAGYPEGMKD--------SCQGDSGGPMVFEREDSRYEQIG 271
++ +T +S ++ + Y +G S GDSGG + +G
Sbjct: 101 KKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHF-----AGSVALG 155
Query: 272 IVSWGAGCGRAGYPGVYTRIT 292
I S +GC ++ +T
Sbjct: 156 IHSGSSGCSGTAGSAIHQPVT 176
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 42.2 bits (99), Expect = 1e-04
Identities = 41/224 (18%), Positives = 67/224 (29%), Gaps = 57/224 (25%)
Query: 70 IVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDR 129
++GG + R C + +TA HC +
Sbjct: 3 VIGGNAYTIG-----------GRSRCSIGFAVNGGFITAGHCGRTG-------------- 37
Query: 130 CDTSSKPESRFVIRAIVGDFTFSNF-DNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYED 188
T++ P G F S+F ND A +R V ++ + N Y
Sbjct: 38 -ATTANP---------TGTFAGSSFPGNDYAFVRTGAGVNLLAQV----------NNYSG 77
Query: 189 ETGVVMGWGTLEESGRPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKD 248
V G G C + +C T T +S+ G
Sbjct: 78 GRVQVAGHTAAPV-GSAVCRSGST-----TGWHCGTITALNSSVTYPEGTVRGLIRTTVC 131
Query: 249 SCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRIT 292
+ GDSGG ++ + + G+ S G+G R G + +
Sbjct: 132 AEPGDSGGSLL-----AGNQAQGVTSGGSGNCRTGGTTFFQPVN 170
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 42.1 bits (99), Expect = 1e-04
Identities = 21/230 (9%), Positives = 55/230 (23%), Gaps = 49/230 (21%)
Query: 74 QPTEVNQYPWMVRLSYFNRFYCG-GTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDT 132
+ + N +P+ F G ++ +LT H K D+ +
Sbjct: 6 KVKDTNIFPYTGV----VAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNG 61
Query: 133 SSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGV 192
+ + D+++++ ++ + ++
Sbjct: 62 GIYSIKKII---------NYPGKEDVSVIQ----------VEERAIERGPKGFNFNDNVT 102
Query: 193 VMGWGTLEESGRPACII-------RDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEG 245
+ ++G +I + + +
Sbjct: 103 PFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGSSIVYSAHTE--------- 153
Query: 246 MKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRITRYV 295
G+SG P++ +S E +GI T +
Sbjct: 154 -----SGNSGSPVL----NSNNELVGIHFASDVKNDDNRNAYGVYFTPEI 194
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 40.6 bits (95), Expect = 3e-04
Identities = 38/209 (18%), Positives = 56/209 (26%), Gaps = 50/209 (23%)
Query: 89 YFNRFYC----GGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRA 144
YF + C + TA HC S P
Sbjct: 10 YFGNYRCSIGFSVRQGSQTGFATAGHCGSTG---------------TRVSSP-------- 46
Query: 145 IVGDFTFSNF-DNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESG 203
G S F D+ +R+ + ++ N Y T V G G
Sbjct: 47 -SGTVAGSYFPGRDMGWVRITSADTVTPLV----------NRYNGGTVTVTGSQEAAT-G 94
Query: 204 RPACIIRDVEVPILSNQYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFERE 263
C + C T + + T G + GDSGGP +
Sbjct: 95 SSVCRSGAT-----TGWRCGTIQSKNQTVRYAEGTVTGLTRTTACAEGGDSGGPWL---- 145
Query: 264 DSRYEQIGIVSWGAGCGRAGYPGVYTRIT 292
+ + G+ S G G R+G + I
Sbjct: 146 -TGSQAQGVTSGGTGDCRSGGITFFQPIN 173
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 40.3 bits (94), Expect = 4e-04
Identities = 36/198 (18%), Positives = 56/198 (28%), Gaps = 63/198 (31%)
Query: 103 RYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNF-DNDIALL 161
+ +TA HC R A+VG F F ND A +
Sbjct: 29 KGFVTAGHCGTV----------NATARIG-----------GAVVGTFAARVFPGNDRAWV 67
Query: 162 RLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSNQY 221
L + V + +R +
Sbjct: 68 SLTSAQTL--------------------LPRVANGSSFVT-------VRGSTEAAVGAAV 100
Query: 222 CRT--STNYSSTRISDNMMCAGYPEGMK------DSC--QGDSGGPMVFEREDSRYEQIG 271
CR+ +T Y I+ + A Y EG ++C +GDSGG + S + G
Sbjct: 101 CRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWI----TSAGQAQG 156
Query: 272 IVSWGAGCGRAGYPGVYT 289
++S G G+
Sbjct: 157 VMSGGNVQSNGNNCGIPA 174
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 35.3 bits (81), Expect = 0.019
Identities = 33/193 (17%), Positives = 52/193 (26%), Gaps = 43/193 (22%)
Query: 101 NDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNF-DNDIA 159
+TA HC ++ I G F S F ND A
Sbjct: 26 GQPGFVTAGHCG----------------------SVGTQVSIGNGRGVFERSVFPGNDAA 63
Query: 160 LLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPILSN 219
+R + +++ + Y + + G C +
Sbjct: 64 FVRGTSNFTLTNLV----------SRYNSGGYATVSGSSTAPIGSQVCRSGST-----TG 108
Query: 220 QYCRTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPMVFEREDSRYEQIGIVSWGAGC 279
YC T + T + GDSGG + S + G+ S G+G
Sbjct: 109 WYCGTIQARNQTVSYPQGTVHSLTRTSVCAEPGDSGGSFI-----SGTQAQGVTSGGSGN 163
Query: 280 GRAGYPGVYTRIT 292
R G Y +
Sbjct: 164 CRTGGTTFYQEVN 176
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 33.3 bits (76), Expect = 0.10
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 8/112 (7%)
Query: 71 VGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRYVLTAAHCVKGRLWFLIKATFG---EY 127
V + + Y + + + G LI VLT H K K +F
Sbjct: 33 VDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINT 92
Query: 128 DRCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLN---DRVPIVDIIKPV 176
D + P + ++ I+ + + D+AL+RL + V + D I P
Sbjct: 93 DDNGNTETPYGEYEVKEILQEPFGA--GVDLALIRLKPDQNGVSLGDKISPA 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.13
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 358 VRDHRQHHKYSDTDADPHNASRGFFFSHIGWLMVRKHPDVIRGGKLVDM 406
+ DH K D+D +F+SHIG H I + + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----HLKNIEHPERMTL 492
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 32.0 bits (73), Expect = 0.24
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 20/96 (20%)
Query: 74 QPTEVNQYPWMVRLSYFNRFYCGGT--LINDRYVLTAAHCVKGRLWFLIKATFGE--YDR 129
Q + N +P+ + T +I ++T H K G+
Sbjct: 7 QVKDTNNFPYNGV-----VSFKDATGFVIGKNTIITNKHVSKD-------YKVGDRITAH 54
Query: 130 CDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLND 165
+ + I++I D DI+++ + +
Sbjct: 55 PNGDKGNGGIYKIKSISDY----PGDEDISVMNIEE 86
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 31.8 bits (72), Expect = 0.28
Identities = 32/220 (14%), Positives = 59/220 (26%), Gaps = 73/220 (33%)
Query: 89 YFNRFYC----GGTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRA 144
C ++ + LTA HC
Sbjct: 8 TTGGSRCSLGFNVSVNGVAHALTAGHCTNI--------------------------SASW 41
Query: 145 IVGDFTFSNF-DNDIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESG 203
+G T ++F +ND ++R ++ G V +
Sbjct: 42 SIGTRTGTSFPNNDYGIIRHSNPAAA--------------------DGRVYLYNG----- 76
Query: 204 RPACIIRDVEVPILSNQYCRT--STNYSSTRIS---------DNMMCAGYPEGMKDSCQG 252
I + R+ +T S ++ + + G + + G
Sbjct: 77 -SYQDITTAGNAFVGQAVQRSGSTTGLRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPG 135
Query: 253 DSGGPMVFEREDSRYEQIGIVSWGAGCGRAGYPGVYTRIT 292
DSGG + + +G+ S G+G R G Y +T
Sbjct: 136 DSGGSLF-----AGSTALGLTSGGSGNCRTGGTTFYQPVT 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.67
Identities = 38/259 (14%), Positives = 76/259 (29%), Gaps = 82/259 (31%)
Query: 65 ND----ATRIVGGQPTEVNQYPWMVRLSYFNRFYCGGTLINDRY---VLTAAHCVKGRLW 117
ND A +++ T + + +++ +Y + + + A +L
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 118 FLIKATFG----------E----YDR--------CDTSSKPESRFVIRAIVGDFTFSN-F 154
A FG E Y S++ S + + + F+
Sbjct: 158 ----AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 155 DNDIALLRLNDRVPIVDIIK--PVCLP----TVLNNTYEDETGVVMGW--GTLEE----- 201
+ + L P D + P+ P L + Y T ++G+ G L
Sbjct: 214 NI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YVV-TAKLLGFTPGELRSYLKGA 270
Query: 202 SGRPACIIRDVEVPI-----------LSNQY--------CRTSTNYSSTRISDNMMCAGY 242
+G ++ V I + R Y +T +
Sbjct: 271 TGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-------- 320
Query: 243 PEGMKDSCQGDSGGP--MV 259
P ++DS + + G P M+
Sbjct: 321 PSILEDSLENNEGVPSPML 339
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 29.3 bits (66), Expect = 1.7
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 97 GTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDN 156
G ++ ++T H K + K + K + ++ IV
Sbjct: 26 GVVVGKNTIVTNKHIAKSND--IFKNRV--SAHHSSKGKGGGNYDVKDIVE----YPGKE 77
Query: 157 DIALLRLNDR 166
D+A++ +++
Sbjct: 78 DLAIVHVHET 87
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 29.7 bits (65), Expect = 2.4
Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 20/193 (10%)
Query: 97 GTLINDRYVLTAAHCVKGRLWFLIKATFGEYDRCDTSSKPESRFVIRAIVGDFTFSNFDN 156
L+ ++Y+++ AH G FG + + V R +++
Sbjct: 60 AALVENQYIVSVAH-NVG----YTDVDFGAEGNNPDQHRFTYKIVKRNNYKKDNLHPYED 114
Query: 157 DIALLRLNDRVPIVDIIKPVCLPTVLNNTYEDETGVVMGWGTLEESGRPACIIRDVEVPI 216
D RL+ + + + +TY D T SGR +
Sbjct: 115 DYHNPRLHK--FVTEAAPIDMTSNMNGSTYSDRTK--YPERVRIGSGRQFWRNDQDKGDQ 170
Query: 217 LSNQYC----------RTSTNYSSTRISDNMMCAGYPEGMKDSCQGDSGGPM-VFEREDS 265
++ Y R + N S D Y +GDSG PM +++ E
Sbjct: 171 VAGAYHYLTAGNTHNQRGAGNGYSYLGGDVRKAGEYGPLPIAGSKGDSGSPMFIYDAEKQ 230
Query: 266 RYEQIGIVSWGAG 278
++ GI+ G
Sbjct: 231 KWLINGILREGNP 243
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.5 bits (60), Expect = 6.0
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 129 RCDTSSKPESRFVIRAIVGDFTFSNFDNDIALLRLNDRVPIVDII 173
R +PE + R ++ + + D+ALL +ND + D +
Sbjct: 121 RDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFV 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.441
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,598,072
Number of extensions: 391462
Number of successful extensions: 1315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 115
Length of query: 421
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,021,377
Effective search space: 1306947525
Effective search space used: 1306947525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)