BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy653
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LX4|A Chain A, Nmr Solution Structure Of Peptide A2n(1-17) From Mus
Musculus V-atpase
Length = 17
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 1 MGSLFRSEEMALCQLFL 17
MGSLFRSE M L QLFL
Sbjct: 1 MGSLFRSESMCLAQLFL 17
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 21 AAYACVSELGELGLVQFRD----RDIPLGYLHFDRINSERLVSS 60
AYACV+ + G+V FRD R + LG D +E +V+S
Sbjct: 165 GAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVAS 208
>pdb|4DBG|B Chain B, Crystal Structure Of Hoil-1l-Ubl Complexed With A
Hoip-Uba Derivative
Length = 162
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 5 FRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDRDIPLGYLHFDRINSERLVSSRVGF 64
R E + L + + EAA AC E+ +Q+ ++PL +L + +V+ G
Sbjct: 10 MREEGLQLVSMIREGEAAGACPEEI--FSALQYSGTEVPLQWLRSELPYVLEMVAELAGQ 67
Query: 65 SDSGV 69
D G+
Sbjct: 68 QDPGL 72
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 25 CVSELGELGLVQFRDRDIPLGYLHFDRINSERLVS--SRVGFSDSGVIRVVPC 75
VSELG++ V R IP YL +D L+ R+ +S V +VPC
Sbjct: 302 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 353
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 25 CVSELGELGLVQFRDRDIPLGYLHFDRINSERLVS--SRVGFSDSGVIRVVPC 75
VSELG++ V R IP YL +D L+ R+ +S V +VPC
Sbjct: 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,370,740
Number of Sequences: 62578
Number of extensions: 74761
Number of successful extensions: 157
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)