Query psy653
Match_columns 91
No_of_seqs 102 out of 275
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 20:25:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 99.2 1.2E-11 4.1E-16 94.1 5.0 71 2-72 6-82 (357)
2 2ns1_B Nitrogen regulatory pro 34.7 32 0.0011 22.0 2.9 28 7-34 2-29 (116)
3 3kqg_A Langerin, C-type lectin 33.2 11 0.00037 24.9 0.4 38 40-78 4-41 (182)
4 3bzq_A Nitrogen regulatory pro 32.2 40 0.0014 21.3 3.0 27 8-34 1-27 (114)
5 2o66_A PII protein; regulation 31.7 50 0.0017 22.1 3.6 32 3-34 6-37 (135)
6 1v74_B Colicin D immunity prot 31.4 21 0.00073 23.0 1.6 40 50-90 22-61 (87)
7 3coq_A Regulatory protein GAL4 26.9 42 0.0014 19.7 2.3 24 52-75 44-67 (89)
8 2eg2_A Nitrogen regulatory pro 25.2 65 0.0022 20.2 3.1 25 10-34 1-25 (112)
9 3ce8_A Putative PII-like nitro 24.4 80 0.0027 21.0 3.5 28 7-34 20-48 (120)
10 3t9z_A GLNK3, nitrogen regulat 24.0 68 0.0023 20.9 3.1 25 10-34 1-25 (118)
11 3pp5_A BRK1, protein brick1; t 24.0 40 0.0014 21.1 1.8 17 55-71 54-70 (73)
12 1vfj_A Nitrogen regulatory pro 23.9 71 0.0024 20.2 3.1 25 10-34 1-25 (116)
13 1hwu_A PII protein; herbaspiri 23.5 73 0.0025 19.9 3.1 25 10-34 1-25 (112)
14 2gw8_A PII signal transduction 23.1 69 0.0024 20.2 2.9 26 9-34 2-27 (114)
15 3ncq_A Nitrogen regulatory pro 22.9 71 0.0024 20.9 3.0 25 10-34 1-25 (119)
16 1pp9_G Ubiquinol-cytochrome C 22.7 30 0.001 21.8 1.0 46 29-75 4-51 (81)
17 4aff_A Nitrogen regulatory pro 21.8 80 0.0028 20.4 3.1 25 10-34 1-25 (116)
18 2qnk_A 3-hydroxyanthranilate 3 21.3 23 0.00078 27.4 0.3 26 65-90 137-162 (286)
19 3mhy_A PII-like protein PZ; PI 21.1 79 0.0027 20.1 2.9 25 10-34 1-25 (112)
20 4dac_A Computationally designe 20.8 74 0.0025 16.4 2.2 20 53-72 8-27 (28)
21 2j9c_A GLNK1, hypothetical nit 20.0 82 0.0028 20.1 2.8 25 10-34 3-27 (119)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.20 E-value=1.2e-11 Score=94.09 Aligned_cols=71 Identities=14% Similarity=-0.065 Sum_probs=55.7
Q ss_pred CCCccccCCceEEEEeecchHHHHHHHhhcccceeeeeCCCCCCCCC--cchh-hHHHHHH---HHHhhhhhhhhhh
Q psy653 2 GSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDRDIPLGYLH--FDRI-NSERLVS---SRVGFSDSGVIRV 72 (91)
Q Consensus 2 gslfRSE~M~l~qL~ip~E~A~~~V~eLG~LglvqF~DLN~~v~~Fq--R~Fv-~eIrRcE---r~l~~l~~ei~~~ 72 (91)
|.|+|-++|+.++|++|.+.+++++++||++|.|||.|+|++++.|+ ++|. +++++|+ ++++++.+.+.+.
T Consensus 6 ~~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~ 82 (357)
T 3rrk_A 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLA 82 (357)
T ss_dssp --------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999999999999999999999999999998 7766 5778874 7777777777654
No 2
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=34.72 E-value=32 Score=21.97 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=23.9
Q ss_pred ccCCceEEEEeecchHHHHHHHhhcccc
Q psy653 7 SEEMALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
+.+|.++..|++.+..-++.+.|-+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 4579999999999999999999988874
No 3
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.25 E-value=11 Score=24.88 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=19.6
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHhhhhhhhhhhhcccch
Q psy653 40 RDIPLGYLHFDRINSERLVSSRVGFSDSGVIRVVPCFSR 78 (91)
Q Consensus 40 LN~~v~~FqR~Fv~eIrRcEr~l~~l~~ei~~~~~~~~~ 78 (91)
||..+.+..|. ...++.+..++..|..++.++.-.++.
T Consensus 4 l~~~~~~l~~~-~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 4 LNAQIPELKSD-LEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp ---------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665 446666778888888888776555543
No 4
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=32.18 E-value=40 Score=21.31 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred cCCceEEEEeecchHHHHHHHhhcccc
Q psy653 8 EEMALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 8 E~M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
+.|.++..+++++.+-++.+.|-+.|.
T Consensus 1 ~~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 1 GHMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 369999999999999999999988874
No 5
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=31.72 E-value=50 Score=22.11 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=28.4
Q ss_pred CCccccCCceEEEEeecchHHHHHHHhhcccc
Q psy653 3 SLFRSEEMALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 3 slfRSE~M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
..|=+.+|.++..+++++.+-++.+.|-+.|.
T Consensus 6 ~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 6 DYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp SCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 35678899999999999999999999988884
No 6
>1v74_B Colicin D immunity protein; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: a.24.20.1 PDB: 1tfk_B* 1tfo_B
Probab=31.42 E-value=21 Score=23.01 Aligned_cols=40 Identities=15% Similarity=-0.022 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHhhhhhhhhhhhcccchhhhhhccCCCCC
Q psy653 50 DRINSERLVSSRVGFSDSGVIRVVPCFSRLECLATCNPCPD 90 (91)
Q Consensus 50 ~Fv~eIrRcEr~l~~l~~ei~~~~~~~~~~~~~~~~~~~~~ 90 (91)
.|..++=|.||...-+...-.++--|+|.+=|+|-| .|||
T Consensus 22 ~F~ee~wr~er~~~~~~~d~~~l~~clsslF~~AD~-Y~pd 61 (87)
T 1v74_B 22 EFSERICVERRRLYGVKDLSPNILNCGEELFMAAER-FEPD 61 (87)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHT-BCCS
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHh-hCCC
Confidence 477788888999877777777788999999999988 3554
No 7
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=26.88 E-value=42 Score=19.74 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhcc
Q psy653 52 INSERLVSSRVGFSDSGVIRVVPC 75 (91)
Q Consensus 52 v~eIrRcEr~l~~l~~ei~~~~~~ 75 (91)
..++..+|++|+.|+..+..+.|-
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 356788899999999999888764
No 8
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=25.21 E-value=65 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.6
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..+++++..-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 2eg2_A 1 MKKIEAIIKPFKLDEVKDALVEIGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999988874
No 9
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=24.37 E-value=80 Score=21.01 Aligned_cols=28 Identities=29% Similarity=0.144 Sum_probs=25.3
Q ss_pred ccCCceEEEEeecchHHHHHHHhhcc-cc
Q psy653 7 SEEMALCQLFLQSEAAYACVSELGEL-GL 34 (91)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~V~eLG~L-gl 34 (91)
|.++.+..++++++.--++.+.|.+. |.
T Consensus 20 ~~~~~lI~aIIrP~kld~V~daL~~~~gi 48 (120)
T 3ce8_A 20 MSTEQLLVLIAQNDIKDDIVDTLIELEFL 48 (120)
T ss_dssp CCSEEEEEEEEEGGGHHHHHHHHTTCTTC
T ss_pred CccceEEEEEeCHHHHHHHHHHHHhCCCC
Confidence 67788999999999999999999998 75
No 10
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=23.98 E-value=68 Score=20.91 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.9
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..||+++..-++.+.|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (118)
T 3t9z_A 1 MKMVVAVIRPEKLECVKKALEERGF 25 (118)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999999884
No 11
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=23.98 E-value=40 Score=21.11 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhhhhhhh
Q psy653 55 ERLVSSRVGFSDSGVIR 71 (91)
Q Consensus 55 IrRcEr~l~~l~~ei~~ 71 (91)
+.+.|++|.||+.++..
T Consensus 54 L~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 54 LTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44457777887776643
No 12
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=23.85 E-value=71 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.6
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..+++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~V~~aL~~~G~ 25 (116)
T 1vfj_A 1 MKLIVAIVRPEKLNEVLKALFQAEV 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHhCCC
Confidence 7889999999999999999988874
No 13
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=23.54 E-value=73 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.6
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..+++++.+-++.+.|-+.|.
T Consensus 1 Mk~I~aII~~~~~~~v~~aL~~~G~ 25 (112)
T 1hwu_A 1 MKQVTAIIKPFKLDEVRESLAEVGV 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7888999999999999999998874
No 14
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=23.10 E-value=69 Score=20.24 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.5
Q ss_pred CCceEEEEeecchHHHHHHHhhcccc
Q psy653 9 EMALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 9 ~M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
.|.++..+++++..-++.+.|-+.|.
T Consensus 2 ~Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (114)
T 2gw8_A 2 PMKKIEAIVKPFKLDDVREALTEIGI 27 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 48999999999999999999988874
No 15
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=22.93 E-value=71 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..||+++..-++.++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~Vk~AL~~~G~ 25 (119)
T 3ncq_A 1 MKKIEAIVRAEKFPEVKAALEERGF 25 (119)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999998874
No 16
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=22.72 E-value=30 Score=21.79 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=25.2
Q ss_pred hhcccceeeeeCCCCCCCC-CcchhhHHHHH-HHHHhhhhhhhhhhhcc
Q psy653 29 LGELGLVQFRDRDIPLGYL-HFDRINSERLV-SSRVGFSDSGVIRVVPC 75 (91)
Q Consensus 29 LG~LglvqF~DLN~~v~~F-qR~Fv~eIrRc-Er~l~~l~~ei~~~~~~ 75 (91)
.|+||-++ .=..-.++|| ||+|.+-++.- -...|=+.+++-.++|-
T Consensus 4 fG~l~k~~-givtYslSP~~Qr~~~g~~~~~i~n~~RR~~~~~l~v~pP 51 (81)
T 1pp9_G 4 FGHLTRVR-HVITYSLSPFEQRAFPHYFSKGIPNVLRRTRACILRVAPP 51 (81)
T ss_dssp TTSSCCCE-EEEEEEECTTTBCSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc-ceEEEEeChhhcccccchHhhhhhHHHHHHHhcceeeehh
Confidence 45555222 1223345777 88888877763 34444445666665443
No 17
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=21.84 E-value=80 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.7
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..+|+++..-++.++|-+.|.
T Consensus 1 MK~I~AIIrp~kl~~vk~AL~~~G~ 25 (116)
T 4aff_A 1 MKKIEAIIRPFKLDEVKIALVNAGI 25 (116)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CeEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999998874
No 18
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.26 E-value=23 Score=27.38 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=18.8
Q ss_pred hhhhhhhhhcccchhhhhhccCCCCC
Q psy653 65 SDSGVIRVVPCFSRLECLATCNPCPD 90 (91)
Q Consensus 65 l~~ei~~~~~~~~~~~~~~~~~~~~~ 90 (91)
|..++-.+|-.|-.-|=..||.|||+
T Consensus 137 l~~ql~~~~~~f~~~~~~rtc~p~~~ 162 (286)
T 2qnk_A 137 LGTQLAPIIQEFFSSEQYRTGKPIPD 162 (286)
T ss_dssp HHHHHHHHHHHHHTSHHHHHSCCCGG
T ss_pred hHHhhHHHHHHHhcCcccccCCCChh
Confidence 44555556666777778899999986
No 19
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=21.08 E-value=79 Score=20.13 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.4
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|..+..|++++..-++.+.|-+.|.
T Consensus 1 MK~I~aIIr~~kl~~vk~AL~~~G~ 25 (112)
T 3mhy_A 1 MKLVMAIIKPFKLDEVREALTSLGI 25 (112)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCC
Confidence 7889999999999999999988874
No 20
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=20.80 E-value=74 Score=16.43 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhhhhhhhhhh
Q psy653 53 NSERLVSSRVGFSDSGVIRV 72 (91)
Q Consensus 53 ~eIrRcEr~l~~l~~ei~~~ 72 (91)
..|+|.|..+.-|+.++.++
T Consensus 8 anvkrlekevgklegevarl 27 (28)
T 4dac_A 8 ANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred ccHHHHHHHHhhhhhhhhhc
Confidence 45788888888777777653
No 21
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=20.04 E-value=82 Score=20.13 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=23.0
Q ss_pred CceEEEEeecchHHHHHHHhhcccc
Q psy653 10 MALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 10 M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
|.++..+++++..-++.+.|-+.|.
T Consensus 3 Mk~I~aII~~~~~~~v~~aL~~~G~ 27 (119)
T 2j9c_A 3 MKKVEAIIRPEKLEIVKKALSDAGY 27 (119)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred eEEEEEEECHHHHHHHHHHHHHCCC
Confidence 8999999999999999999988874
Done!