Query psy653
Match_columns 91
No_of_seqs 102 out of 275
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 20:26:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nh8a2 d.58.5.3 (A:211-284) A 36.6 16 0.0011 21.3 3.1 27 7-33 34-60 (74)
2 d2cz4a1 d.58.5.1 (A:1-100) Hyp 34.5 15 0.0011 21.8 2.8 28 7-34 3-30 (100)
3 d1h9ii_ g.3.2.1 (I:) Trypsin i 26.4 8.8 0.00064 19.1 0.5 15 72-86 6-20 (30)
4 d1h3da2 d.58.5.3 (A:225-299) A 25.6 18 0.0013 21.0 2.0 28 6-33 34-61 (75)
5 d2guka1 d.360.1.1 (A:4-114) Hy 25.6 19 0.0014 22.8 2.2 57 12-68 24-87 (111)
6 d1sopa_ g.71.1.1 (A:) Mini-col 24.0 14 0.00099 17.7 1.0 7 81-87 6-12 (26)
7 d1v6za2 c.116.1.5 (A:67-228) H 23.9 75 0.0054 19.7 5.1 69 9-77 6-75 (162)
8 d1r7la_ d.277.1.1 (A:) Bacillu 23.7 17 0.0013 22.2 1.7 25 19-43 48-72 (103)
9 d2ebsa2 b.69.13.1 (A:431-786) 23.2 7.4 0.00054 27.4 -0.2 37 8-45 13-49 (356)
10 d2csua1 c.2.1.8 (A:1-129) Acet 19.5 23 0.0016 21.6 1.6 35 8-42 63-97 (129)
No 1
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=36.64 E-value=16 Score=21.35 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=23.7
Q ss_pred ccCCceEEEEeecchHHHHHHHhhccc
Q psy653 7 SEEMALCQLFLQSEAAYACVSELGELG 33 (91)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~V~eLG~Lg 33 (91)
.++|.-++.+++.+..|++|.+|-+.|
T Consensus 34 ~~~wvAV~~vv~e~~v~~~i~~Lk~~G 60 (74)
T d1nh8a2 34 DPDWVAIRALVPRRDVNGIMDELAAIG 60 (74)
T ss_dssp STTEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEeHHHHHHHHHHHHHcC
Confidence 467888999999999999999987776
No 2
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=34.50 E-value=15 Score=21.75 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=24.5
Q ss_pred ccCCceEEEEeecchHHHHHHHhhcccc
Q psy653 7 SEEMALCQLFLQSEAAYACVSELGELGL 34 (91)
Q Consensus 7 SE~M~l~qL~ip~E~A~~~V~eLG~Lgl 34 (91)
..+|.++.+++.++.+.++...|.+.|.
T Consensus 3 ~~~mK~v~iIv~~~~~~~v~~~L~~~Gv 30 (100)
T d2cz4a1 3 LVPLKLVTIVAESLLEKRLVEEVKRLGA 30 (100)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred ccceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 4589999999999999999988888873
No 3
>d1h9ii_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=26.45 E-value=8.8 Score=19.07 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=12.4
Q ss_pred hhcccchhhhhhccC
Q psy653 72 VVPCFSRLECLATCN 86 (91)
Q Consensus 72 ~~~~~~~~~~~~~~~ 86 (91)
+|-|-|.-.|||+|-
T Consensus 6 lirckqdsdclagcv 20 (30)
T d1h9ii_ 6 LIRCKQDSDCLAGCV 20 (30)
T ss_dssp CCBCSSGGGSCTTCE
T ss_pred EEEeccCccccceeE
Confidence 477888899999984
No 4
>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.65 E-value=18 Score=21.03 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=19.3
Q ss_pred cccCCceEEEEeecchHHHHHHHhhccc
Q psy653 6 RSEEMALCQLFLQSEAAYACVSELGELG 33 (91)
Q Consensus 6 RSE~M~l~qL~ip~E~A~~~V~eLG~Lg 33 (91)
..++|.-++.+++.+..|+++.+|-+.|
T Consensus 34 ~~~~wvAV~~vv~e~~v~~~i~~Lk~~G 61 (75)
T d1h3da2 34 GDQQRVAMHMVSSETLFWETMEKLKALG 61 (75)
T ss_dssp -------BEEEESSCCCHHHHHHHHHTT
T ss_pred CCCCEEEEEEEEchHHHHHHHHHHHHcC
Confidence 4578888999999999999999987776
No 5
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=25.55 E-value=19 Score=22.81 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=44.0
Q ss_pred eEEEEeecchHHHHHHHhhcccceeeee-C-CC-CCCCC--CcchhhHHHHH--HHHHhhhhhh
Q psy653 12 LCQLFLQSEAAYACVSELGELGLVQFRD-R-DI-PLGYL--HFDRINSERLV--SSRVGFSDSG 68 (91)
Q Consensus 12 l~qL~ip~E~A~~~V~eLG~LglvqF~D-L-N~-~v~~F--qR~Fv~eIrRc--Er~l~~l~~e 68 (91)
|+=..+|++.+-.++..|...|+-+|+. . |+ .+|-| .+..+.-||++ .|.|+-|..|
T Consensus 24 L~L~T~~~~~~~~~~~rL~~~~I~y~iq~v~~~~kvNlFFG~~~ci~~ir~~~~~rpL~~lt~E 87 (111)
T d2guka1 24 MVLATLANDDIPYAEERLRSRQIPYFAQPTPNTERTNLFFGCKECMEAIRLFVSGRSLNSLTPE 87 (111)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTTCCEEEECCTTSSEEEEEEECHHHHHHHHHHHTTSCGGGCCHH
T ss_pred HHHHhcCHhHHHHHHHHHhhCCCCeEEEEcCCCCeEEEEeCCHHHHHHHHHHHcCCchhhCChH
Confidence 4556689999999999999999999994 6 65 57777 57788888876 3566655544
No 6
>d1sopa_ g.71.1.1 (A:) Mini-collagen I, C-terminal domain {Hydra sp. [TaxId: 6086]}
Probab=23.99 E-value=14 Score=17.73 Aligned_cols=7 Identities=57% Similarity=1.549 Sum_probs=3.6
Q ss_pred hhhccCC
Q psy653 81 CLATCNP 87 (91)
Q Consensus 81 ~~~~~~~ 87 (91)
|.|.|-|
T Consensus 6 cvaqcvp 12 (26)
T d1sopa_ 6 CVAQCVP 12 (26)
T ss_dssp TTTCCCT
T ss_pred hhhhccC
Confidence 5555544
No 7
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=23.86 E-value=75 Score=19.73 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=45.6
Q ss_pred CCceEEEEeecchHHHHHHHhhcccceeeeeCCCCCCCCCcchhhHHHHHHHHHhhhhhhhhhh-hcccc
Q psy653 9 EMALCQLFLQSEAAYACVSELGELGLVQFRDRDIPLGYLHFDRINSERLVSSRVGFSDSGVIRV-VPCFS 77 (91)
Q Consensus 9 ~M~l~qL~ip~E~A~~~V~eLG~LglvqF~DLN~~v~~FqR~Fv~eIrRcEr~l~~l~~ei~~~-~~~~~ 77 (91)
+.++++=++-.+.....+....|+|.-.|.=+..+=+..+-...+.+.|.++++.---+|-.+. +|-+.
T Consensus 6 ~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~ 75 (162)
T d1v6za2 6 EVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVL 75 (162)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEEC
T ss_pred eEEEEEeccCchHHHHHHHHHHhhCcCEEEEEEecccchhhhchhhhhHHHHHHHHHHHhccccCCCccc
Confidence 4566776666777888999999999777766555433222223456777777777666777664 66554
No 8
>d1r7la_ d.277.1.1 (A:) Bacillus phage protein {Bacillus cereus [TaxId: 1396]}
Probab=23.73 E-value=17 Score=22.20 Aligned_cols=25 Identities=24% Similarity=0.066 Sum_probs=22.0
Q ss_pred cchHHHHHHHhhcccceeeeeCCCC
Q psy653 19 SEAAYACVSELGELGLVQFRDRDIP 43 (91)
Q Consensus 19 ~E~A~~~V~eLG~LglvqF~DLN~~ 43 (91)
.|+||++|+.|.---.|.-.||.|.
T Consensus 48 iesawqvvekleydvkvtktdlkpk 72 (103)
T d1r7la_ 48 IESAWQVVEKLEYDVKVTKTDLKPK 72 (103)
T ss_dssp HHHHHHHHHHSSSEEEEEECSSSSS
T ss_pred hHHHHHHHHHhhheeeEeeccCCcc
Confidence 4899999999998888889998875
No 9
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}
Probab=23.19 E-value=7.4 Score=27.44 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=31.8
Q ss_pred cCCceEEEEeecchHHHHHHHhhcccceeeeeCCCCCC
Q psy653 8 EEMALCQLFLQSEAAYACVSELGELGLVQFRDRDIPLG 45 (91)
Q Consensus 8 E~M~l~qL~ip~E~A~~~V~eLG~LglvqF~DLN~~v~ 45 (91)
|||....|+-|+.-| +.|+.+|..|-+-+.||.....
T Consensus 13 ee~~~~~l~spp~g~-~l~s~~gd~~gf~~~dl~~p~~ 49 (356)
T d2ebsa2 13 EENAILSLRSPKSGA-ALLSGIGNISGMKHDDLTKPQK 49 (356)
T ss_dssp BCCBEEEEECCSSSS-SEEEEESSSBCBEESCTTSCCC
T ss_pred ehhheeeeEcCCCCC-ceeEEEecCCceEEccCCCCcc
Confidence 899999999999987 6999999999888899975433
No 10
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.48 E-value=23 Score=21.62 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=28.0
Q ss_pred cCCceEEEEeecchHHHHHHHhhcccceeeeeCCC
Q psy653 8 EEMALCQLFLQSEAAYACVSELGELGLVQFRDRDI 42 (91)
Q Consensus 8 E~M~l~qL~ip~E~A~~~V~eLG~LglvqF~DLN~ 42 (91)
++..++-+++|.+..-+++.++++.|.=..+=+-+
T Consensus 63 ~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 63 DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCCceEEEecChHHhHHHHHHHHHcCCCEEEEecc
Confidence 45678899999999999999999999654444433
Done!