RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy653
(91 letters)
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 54.4 bits (130), Expect = 2e-10
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 2 GSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDRD 41
G++ ++M + A ++EL + G+V
Sbjct: 6 GTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLR 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.040
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 42/104 (40%)
Query: 5 FRSEEMALCQ-------LFLQSEAAYACVSELGELGLVQFRDRDI----PLG-Y------ 46
FRSE+ L L L A +L GL+ LG Y
Sbjct: 1719 FRSEKGLLSATQFTQPALTL---MEKAAFEDLKSKGLIP--ADATFAGHSLGEYAALASL 1773
Query: 47 ---LHF-DRINSERLVSSR------------VGFSDSGVIRVVP 74
+ + +V R +G S+ G+I + P
Sbjct: 1774 ADVMSIESLV---EVVFYRGMTMQVAVPRDELGRSNYGMIAINP 1814
Score = 26.6 bits (58), Expect = 1.5
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 35/74 (47%)
Query: 1 MGSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDRDIPLGYLHFDRINSERLVSS 60
MG M L + S+AA +D+ ++R +
Sbjct: 1631 MG-------MDLYK---TSKAA-----------------QDV------WNRA--DNHFKD 1655
Query: 61 RVGFSDSGVIRVVP 74
GFS ++ P
Sbjct: 1656 TYGFSILDIVINNP 1669
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine
biosynthesis, transferase, glycosyltransferase, gluta
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 29.4 bits (67), Expect = 0.10
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 11 ALCQLFLQSEAAYACVSELGELGLVQFRD----RDIPLGYLHFDRINSERLVSS 60
A+ AYACV+ + G+V FRD R + LG D +E +V+S
Sbjct: 155 AIAATNRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVAS 208
>2xvl_A Alpha-xylosidase, putative, XYL31A; hydrolase, glycosyl hydrolase
family 31, (beta/alpha)8 barre; HET: PXN; 2.30A
{Cellvibrio japonicus} PDB: 2xvg_A* 2xvk_A*
Length = 1020
Score = 27.2 bits (60), Expect = 0.66
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 16 FLQSEAAYACVSELGELGLVQ-FRDRDIPLGYLHFD 50
F QS Y E+ + ++ +RDR IP+ + D
Sbjct: 437 FWQSRERYKSSDEI--IQNLKEYRDRKIPIDNIVLD 470
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 27.0 bits (60), Expect = 0.92
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 16 FLQSEAAYACVSELGELGLVQ-FRDRDIPLGYLHFD 50
+ + E + +R++PL HFD
Sbjct: 271 LWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFD 306
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all
helical bundle C terminal rossmann fold, cobalt,
metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Length = 215
Score = 26.5 bits (59), Expect = 1.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 2 GSLFRSEEMALCQLFLQSEAAYACVSEL 29
G F + E+ L Q+ + +A + L
Sbjct: 51 GDKFEAAEIFLPQIMMSGKAMSNAMEVL 78
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM,
methyl transferase, structural genomics, PSI, protein
structure initiative; HET: B1M; 1.70A {Moorella
thermoacetica}
Length = 210
Score = 25.7 bits (57), Expect = 2.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 2 GSLFRSEEMALCQLFLQSEAAYACVSEL 29
G LF++ EM + ++ + + A A V +
Sbjct: 49 GVLFKNNEMFVPEVLMSANAMNAGVEVV 76
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 25.6 bits (57), Expect = 2.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 1 MGSLFRSEEMALCQLFLQSEAAY 23
+G + + E+ +FL SEA +
Sbjct: 215 LGRMGQPAEVGAAAVFLASEANF 237
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 25.2 bits (56), Expect = 3.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 1 MGSLFRSEEMALCQLFLQSEAAY 23
M ++E+A LFL EA +
Sbjct: 213 MKRNGTADEVARAVLFLAFEATF 235
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like
domain, U5 snRNP assembly; 1.80A {Saccharomyces
cerevisiae} PDB: 3sbs_A
Length = 363
Score = 25.1 bits (54), Expect = 4.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 40 RDIPLGYLHFDRINSERLVSSRVGF 64
+DIP+G++H S R G+
Sbjct: 34 KDIPIGHVHVIHFQHADNSSMRYGY 58
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 25.1 bits (55), Expect = 4.0
Identities = 1/14 (7%), Positives = 4/14 (28%)
Query: 37 FRDRDIPLGYLHFD 50
+ + + D
Sbjct: 199 MQKEGFRVAGVFLD 212
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 24.0 bits (52), Expect = 9.1
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 33 GLVQFRDRDIPLGYLHFDRINSERLVSSRVGFSDSGVIRV 72
GL++ + FD + +L + V
Sbjct: 913 GLIRLDNLTEDPNSAAFDEVE-YKLTFVPTNSDKPRDVYV 951
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.450
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,376,586
Number of extensions: 67919
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 14
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)