RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy653
         (91 letters)



>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
          {Escherichia coli [TaxId: 562]}
          Length = 338

 Score = 24.7 bits (53), Expect = 2.1
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 16 FLQSEAAYACVSELGELGLVQ-FRDRDIPLGYLHFD 50
             + +      E      +    +R++PL   HFD
Sbjct: 24 LWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFD 59


>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 250

 Score = 23.7 bits (51), Expect = 3.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 1   MGSLFRSEEMALCQLFLQSEAAY 23
           +G + +  E+    +FL SEA +
Sbjct: 212 LGRMGQPAEVGAAAVFLASEANF 234


>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
           estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 302

 Score = 23.4 bits (50), Expect = 5.7
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 1   MGSLFRSEEMALCQLFLQSEAAY 23
           +    + E +A   L+L  E+  
Sbjct: 207 LVEALKPEYVAPLVLWLCHESCE 229


>d1v3ea_ b.68.1.1 (A:) Hemagglutinin-neuraminidase glycoprotein
           {Human parainfluenza virus type 3 [TaxId: 11216]}
          Length = 431

 Score = 22.9 bits (49), Expect = 8.4
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 41  DIPLGYLHFDRINSERLVSSRVGFSDSGVIRVVP 74
           DI L  +++D   S     +     D     + P
Sbjct: 146 DIVLDIVNYDGSISTTRFKNNNISFDQPYAALYP 179


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 333,012
Number of extensions: 12785
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 4
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)