BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6532
(277 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
Length = 891
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 144/275 (52%), Gaps = 7/275 (2%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ IYKSLI SK+ YG +YN+A N L+IL+P+ N +RLA GAFR+S S+ GE
Sbjct: 47 LLSIYKSLILSKIKYGSQIYNTAKPNLLKILDPIHNEGIRLAIGAFRTSSTDSILNYAGE 106
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCA 121
L ++R + YI K S N + + K +D SK+E GVG A
Sbjct: 107 LPLQLQRDQDTLAYITKRKSTTNRIGYKAIFDNHAASPINMEHKKKPLDASKSEHGVGFA 166
Query: 122 LTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF 181
+ + D + + L + SIF AE +A+ + + L T L+I+DSLS L A N
Sbjct: 167 VV--KDDTIIQHKLPEITSIFSAENYAIFEGVKLANTLETNDILLISDSLSTLLAFKNTS 224
Query: 182 HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD---EEAKQAINNDVIHNELFFD 238
N + +Q L ++ + F+W PSH GI GNE AD E+A Q I N I+N D
Sbjct: 225 PRNEITSNIQACLVQSKKNIVFMWVPSHTGIIGNEKADKHAEQATQTILNPTINNISSID 284
Query: 239 EVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
+K I +K W W +I+ + NKL+ IK +I
Sbjct: 285 -IKNSINQKILSSWQNYWNSITLS-NKLKNIKKTI 317
>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus]
Length = 1133
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 150/353 (42%), Gaps = 82/353 (23%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
+Y ++IRS DYG + ++L IL+ +Q CLR+ GA +SSP+ +L+ E GE L
Sbjct: 689 LYNAIIRSHFDYGSFLLVPCIKSALSILDKIQAKCLRIICGAMKSSPINALQVECGEAPL 748
Query: 65 DIRRKILSSNYIAKTLSIENH--------------------------------------- 85
+RR+ LS + K + NH
Sbjct: 749 HLRRQYLSDRFFLKVIQFSNHPLIPKLNSLSDLIPSNKYWSHKEYPCLLTSLVKFLRLPC 808
Query: 86 PNIMRTLNPLYVRKYENSNMKPTI---------------------------------DGS 112
P + + PL+ Y+ N P I D S
Sbjct: 809 PVLQNQMFPLFATPYDVLNFHPQILLEFGIDKGSAIANVQFQNYVKEHWSDWLCIYTDAS 868
Query: 113 K--NEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDS 170
K ++ G A+ IP+ +I+ F SIF AE A+L+++ ++ ++I +DS
Sbjct: 869 KMADQSNAGAAVWIPKYNIILNFKFPSEISIFTAESIAILEAVSFVESHKLNNSIIFSDS 928
Query: 171 LSCLQAIM-NMF---HENPLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEAK 223
SCLQAI N F H P + ++++ L +S V W PSH GI GNET D AK
Sbjct: 929 KSCLQAIARNPFISKHNYPYILKIKDILFRCQSSNIQVRLAWIPSHSGIHGNETVDYYAK 988
Query: 224 QAINNDVI-HNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILP 275
A N + H ++ +++ I K+++ W W+ S ++ K S++P
Sbjct: 989 DATNTGCMDHFGVYPNDLIPIAKQRFFSSWTQYWLKTSRSKGKYYADVQSLIP 1041
>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
Length = 1915
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 63/333 (18%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L++I+++ I SKLDYG P+++SA L+IL + N +RL+ GAFRSSP+ S+ G
Sbjct: 801 LLKIHEAFILSKLDYGAPIFSSAKHTKLKILETIHNSGIRLSIGAFRSSPIKSILNIAGI 860
Query: 62 PNLDIRRKILSSNYIAK-TLSIENH-PNIMRTLNPLYVRKYENSNMKPT----------- 108
P+L++R + + A+ + S +NH + T N ++ KY+ N+ P
Sbjct: 861 PSLEVRWREQTHKLAARISRSPQNHIHHPKHTFNHTFI-KYDLENIIPYEKPLCPPWQFS 919
Query: 109 --------------------------------------IDGSKNEQGVGCALTIPEKDIV 130
D S E VG A+ E I
Sbjct: 920 MNINIDLHQFPKNSTCPHIFKNAFRDICSHTHPQTHIYTDASIIEGRVGMAIICDETTI- 978
Query: 131 KRFGLNKNASIFHAELFALLQSL-LTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKR 189
++ L+ SI+ AE A+L+++ TI ++ I +DSLS L ++ N++ + +V++
Sbjct: 979 -QWKLSDKCSIYTAETLAILKAIEFTISEINDSNITIFSDSLSALTSLQNLYSPSDIVRK 1037
Query: 190 VQEEL---SSTESPVEFLWCPSHVGIAGNETADEEAKQAIN--NDVIHNELFFDEVKIII 244
+Q + + + W P H I GNE AD AK A + N + F+++K +I
Sbjct: 1038 IQNTHYIPKQQDKNITYSWVPGHCNIDGNELADSAAKLAHSSPNSLSLPIFSFNDIKRVI 1097
Query: 245 KKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
+K +W +S KL +IK S LPSS
Sbjct: 1098 EKDTLLHCQKEWNEMS---TKLNEIKRSTLPSS 1127
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK E V CA + K I +R L SIF AEL A+L +L+ +K K +I +D
Sbjct: 962 DGSKMEGKVACACSFRNKTISRR--LPDGCSIFTAELHAILLALMAVKASERSKFIICSD 1019
Query: 170 SLSCLQAIMNMFHENPLVKR---VQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
S S LQA+ M + PLV + + + +++ V F+W PSHVGI GNE AD EAK+A+
Sbjct: 1020 SKSALQALGRMKTDIPLVHKSLKLLDLITADRRDVTFIWVPSHVGIEGNEAADREAKRAL 1079
Query: 227 NNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKI 269
N+ V ++ + +++ I EW +W + +KLR+I
Sbjct: 1080 NHAVSGTQIPYSDLRQSIASATYREWQNRWE--AETHSKLRQI 1120
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +Y+SLIRSKLDYG +Y +A + L+IL P+QN LRL GAFR+SP+ SL E GE
Sbjct: 781 LLLLYRSLIRSKLDYGSIIYGAARKSYLKILEPIQNAALRLCLGAFRTSPIPSLHVEAGE 840
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTI 109
+DIR K L+ YI K S +P NP V Y N +P +
Sbjct: 841 LPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELY---NRRPNV 885
>gi|443699889|gb|ELT99143.1| hypothetical protein CAPTEDRAFT_215477 [Capitella teleta]
Length = 347
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 29/228 (12%)
Query: 12 SKLDYGCPVYNSASSNSLQILNPVQN--------LCLRLATGAFRSSPVVSLEAETGEPN 63
S+LDYG VY SA L+ L P+QN +CL GAFR+SP+ SL E E
Sbjct: 47 SRLDYGALVYGSAQPLYLERLKPMQNQAEAQAKSICL----GAFRTSPITSLHVEANEMP 102
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALT 123
+ IR + LS ++ + + +P N R Y N + + T+ N
Sbjct: 103 MPIRHQFLSLHFALRVYANVANPANQCIFNHYNARFYINGSKRETMQSGFNR-------- 154
Query: 124 IPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-KALIITDSLSCLQAIMNMFH 182
++ + L +ASIF AEL A+ + L ++ + + LI+TDSLS LQA+ N
Sbjct: 155 -----LLIQVRLPDSASIFSAELLAIYEVLTLLECAASYEQILIVTDSLSSLQALGNFNI 209
Query: 183 ENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
+P V ++ E+ L + + LWCPSHVG+ GN AD AK+A++
Sbjct: 210 THPYVFKILEKYTILYNRGFDLVMLWCPSHVGVVGNARADLLAKKALS 257
>gi|427791981|gb|JAA61442.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1060
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 59/84 (70%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ IY+SL+RSKLDYG +Y SA + L+ L+PV N LRLATGA+R+SP+ SL AE+ E
Sbjct: 809 LLHIYRSLVRSKLDYGSIIYGSARDSYLKRLDPVHNKGLRLATGAYRTSPIPSLYAESNE 868
Query: 62 PNLDIRRKILSSNYIAKTLSIENH 85
P+L+ RR L Y+ K S +H
Sbjct: 869 PSLEYRRTQLMFTYVLKVRSSPDH 892
>gi|443700898|gb|ELT99633.1| hypothetical protein CAPTEDRAFT_212630, partial [Capitella teleta]
Length = 300
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 17/197 (8%)
Query: 90 RTLNPLYVRKYENSNMKPT--------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASI 141
+T NP Y + E N+ DGSK++ V C+ T I R L +ASI
Sbjct: 95 KTANPNYTLRNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATADNLRIQIR--LPDSASI 152
Query: 142 FHAELFALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES 199
F AEL A+ Q +LL + LI TDSLS LQAI N ++P V ++ ++ +
Sbjct: 153 FSAELLAIYQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILQKCTLLHK 212
Query: 200 PVEFL---WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+L WCPSHVG+ GNE AD AK+A++ + + K I + Y E+W +W
Sbjct: 213 KGIYLVMAWCPSHVGVMGNERADLLAKEALSFTTCTIRVPSSDFKPITHEFYKEKWQEQW 272
Query: 257 VNISPNENKLRKIKNSI 273
S ENKL I+ +I
Sbjct: 273 S--SEQENKLYCIQPTI 287
>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]
Length = 377
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 98/197 (49%), Gaps = 17/197 (8%)
Query: 90 RTLNPLYVRKYENSNMKPT--------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASI 141
+T NP Y K E N+ DGSK++ V C T I R L +ASI
Sbjct: 164 KTANPNYTLKNEFYNLMDKYPDHKVIFTDGSKSDSAVACFATADNLSIQIR--LPDSASI 221
Query: 142 FHAELFALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES 199
F AEL A+ Q +LL + LI TDSLS LQAI N ++P V ++ E+ +
Sbjct: 222 FSAELLAIYQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHK 281
Query: 200 PVEFL---WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+L WCPSHVG+ GNE AD AK+A++ + + K I + + E+W +W
Sbjct: 282 KGIYLVMAWCPSHVGVMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFFKEKWQEQW 341
Query: 257 VNISPNENKLRKIKNSI 273
S ENKL I+ ++
Sbjct: 342 S--SEQENKLYCIQPTL 356
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
+L R+++SL+RS+LDYG VY SA + L+ L P+QN RL GAFR SPV SL E
Sbjct: 9 VLFRLFRSLLRSRLDYGAIVYGSARISYLERLKPIQNQAFRLCLGAFRISPVTSLHTEAN 68
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHP 86
E + IR+K+LS + + S +P
Sbjct: 69 EMPMAIRQKLLSVQFALRVCSDTTNP 94
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1035
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 63/85 (74%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ IYKSL+R++LDYG VY+SA+ ++L+IL+P+ +L +RLATGAFR+SPV SL E+ +
Sbjct: 621 LMDIYKSLVRTRLDYGSVVYHSAAPSALKILDPIHHLGIRLATGAFRTSPVQSLYVESNQ 680
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
+L ++R +S Y K + + HP
Sbjct: 681 WSLHLQRSYMSFVYFLKVKAEKEHP 705
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 135 LNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM-FHENPLVKRVQEE 193
L++N SIF AE +A+ ++ I+QL A+I TDSLS ++A+ + H+NP++ +
Sbjct: 824 LHQNTSIFTAEAYAIFVAVKHIEQLKLPSAVIYTDSLSVVKALKTLKKHKNPVLASLYSL 883
Query: 194 LSST---ESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFD--EVKIIIKKKY 248
L + + V W P H I GN AD+ A A N H L ++K ++K+K
Sbjct: 884 LCTVYALKQHVVVCWVPGHREIQGNVLADQLAASAHEN-AAHTFLAIPALDLKPLLKRKL 942
Query: 249 TEEWNTKWVNISPNENKLRKIK 270
W + W + +NKL IK
Sbjct: 943 RAYWQSIWD--TQTQNKLHAIK 962
>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
Length = 397
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 97 VRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
+ KY N+ DGSK+ V CA T I +FGL SI+ AEL A+ Q+L+ I
Sbjct: 125 IDKYPGINI--YTDGSKSNDTVACAFTCSTYQI--QFGLPAQMSIYTAELIAIEQALIFI 180
Query: 157 KQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRV---QEELSSTESPVEFLWCPSHVGI 212
+ + I +DSLS L A+ N +P + + Q L V F+WCPSHVGI
Sbjct: 181 ETVKDEDQFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVVFIWCPSHVGI 240
Query: 213 AGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIK 270
GNE AD +AKQA+ V L + K I+ W +W +NKL I+
Sbjct: 241 LGNEVADRQAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDG--ETDNKLHIIQ 296
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 62/86 (72%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +YKSLIR++LDYG +Y SAS +L++L+PV +L +RL+TGAFR+SPV SL E+ E
Sbjct: 787 LMNLYKSLIRTRLDYGAIIYQSASPTALKMLDPVHHLGIRLSTGAFRTSPVESLYVESNE 846
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPN 87
+L ++R +S Y K + + HP+
Sbjct: 847 WSLHLQRSYMSFLYYLKVNADKEHPS 872
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D SK+ V A P L+ N SIF AE +A+L ++ I++L KA+I TD
Sbjct: 967 DASKSHTSVSYAAVGPSFSAAG--ALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 170 SLSCLQAIMNM-FHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
SLS ++A+ + H+N ++ + + + + V W P H I GN AD A A
Sbjct: 1025 SLSVVKALKTLKKHKNSILVSLYSLVCTVYTAKQHVVVCWVPGHREIQGNVMADHLA--A 1082
Query: 226 INNDVIHN---ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIK 270
+D N + ++K ++K+K W + W + NKL IK
Sbjct: 1083 STHDCSANTSIAIPALDLKPLLKRKLRAYWQSTWDQQT--HNKLHVIK 1128
>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]
Length = 261
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 97 VRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
+ KY N+ DGSK+ V CA T I +FGL SI+ AEL A+ Q+L+ I
Sbjct: 30 IDKYPGINI--YTDGSKSNDAVACAFTCSTYQI--QFGLPAQMSIYTAELIAIEQALIFI 85
Query: 157 KQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRV---QEELSSTESPVEFLWCPSHVGI 212
+ + I +DSLS L A+ N +P + + Q L V F+WCPSHVGI
Sbjct: 86 ETVKDEDQFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGI 145
Query: 213 AGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNS 272
GNE AD AKQA+ V L + K I+ W +W +NKL I+
Sbjct: 146 LGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDE--ETDNKLHSIQPV 203
Query: 273 I 273
I
Sbjct: 204 I 204
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 62/86 (72%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +YKSLIR++LDYG +Y SAS +L++L+PV +L +RL+TGAFR+SPV SL E+ E
Sbjct: 787 LMNLYKSLIRTRLDYGAIIYQSASPTALKMLDPVHHLGIRLSTGAFRTSPVESLYVESNE 846
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPN 87
+L ++R +S Y K + + HP+
Sbjct: 847 WSLHLQRSYMSFLYYIKVNADKEHPS 872
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 15/169 (8%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D SK+ V A P L+ N SIF AE +A+L ++ I++L KA+I TD
Sbjct: 967 DASKSHTSVSYAAVGPSFSAAG--ALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 170 SLSCLQAIMNM-FHENPLVKRVQEELS---STESPVEFLWCPSHVGIAGNETADEEAKQA 225
SLS ++A+ + H NP++ + L +++ V W P H I GN AD+ A A
Sbjct: 1025 SLSVVKALKTLKKHRNPVLVSLYSLLCTIYTSKQHVVVCWVPGHREIQGNVMADQLAVSA 1084
Query: 226 ----INNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIK 270
N + L ++K +K+K W + W + NKL IK
Sbjct: 1085 HDSSANTSIAIPAL---DLKPYLKRKIRAYWQSTWDRQT--HNKLHVIK 1128
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1210
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 58/84 (69%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+RIY+S++RS LDYGC VY SA + ++ L+PV NL LRL++GA+R+SPV SL + E
Sbjct: 760 LLRIYRSIVRSILDYGCVVYGSARESYIRRLDPVHNLGLRLSSGAYRTSPVESLYVDCNE 819
Query: 62 PNLDIRRKILSSNYIAKTLSIENH 85
P L RR L+ +Y+ + S H
Sbjct: 820 PPLSHRRASLTLSYVLRIRSSPQH 843
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK VG + E R + + SIF AE++AL ++ I KA+I TD
Sbjct: 942 DGSKTRDHVGIGIVTGESAFSVR--VPQCISIFTAEVYALYEAARKIIAGKHKKAIIYTD 999
Query: 170 SLSCLQAIMNMFHENPLVKRVQEE--LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
SLS L+A+ PLV + ++S + F W PSHVGI GNE AD+ A A +
Sbjct: 1000 SLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAAH 1059
Query: 228 NDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRK 268
+ + + + I+ +W +W + + N+ L K
Sbjct: 1060 KTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVK 1100
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1212
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 58/84 (69%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+RIY+S++RS LDYGC VY SA + ++ L+PV NL LRL++GA+R+SPV SL + E
Sbjct: 763 LLRIYRSIVRSILDYGCVVYGSARESYIRRLDPVHNLGLRLSSGAYRTSPVESLYVDCNE 822
Query: 62 PNLDIRRKILSSNYIAKTLSIENH 85
P L RR L+ +Y+ + S H
Sbjct: 823 PPLSHRRASLTLSYVLRIRSSPQH 846
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK VG + E R + + SIF AE++AL ++ I KA+I TD
Sbjct: 945 DGSKTRDHVGIGIVTGESAFSVR--VPQCISIFTAEVYALYEAARKIIAGKHKKAIIYTD 1002
Query: 170 SLSCLQAIMNMFHENPLVKRVQEE--LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
SLS L+A+ PLV + ++S + F W PSHVGI GNE AD+ A A +
Sbjct: 1003 SLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAAH 1062
Query: 228 NDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRK 268
+ + + + I+ +W +W + + N+ L K
Sbjct: 1063 KTLTKIRIPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVK 1103
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1397
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 60/85 (70%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
LI +++SL+ S++DYG +Y SAS +L++L+PV +L +RLA GAFR+SPV SL AE+ +
Sbjct: 880 LITLFRSLVLSRIDYGSIIYQSASKTALKLLDPVYHLGIRLALGAFRTSPVQSLYAESDQ 939
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
LD +R L Y + +S++ HP
Sbjct: 940 WPLDYQRTYLGVTYATRIMSLKQHP 964
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK++ V CA K L+ + SIF AE + +L + IKQ +++I TD
Sbjct: 1114 DGSKSQTSVSCAAYGESFSDAK--TLHAHTSIFTAEAYGILLIVEHIKQHMIRRSIIYTD 1171
Query: 170 SLSCLQAI-MNMFHENPLVKRV---QEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
SLS + A+ +NP+ ++ E + + W P H GI GNE D+ A++A
Sbjct: 1172 SLSVVTALSCGKCSKNPVFNKLLNNMHEAYNQNLSIVLCWVPGHAGITGNEMVDKNAREA 1231
Query: 226 INNDVIH-NELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIK---NSILP 275
+ I + + ++ ++++ W +W +NKL +K + +LP
Sbjct: 1232 ASRHTIDISSVPGVDLNPVVRRGLRSHWQVEWDK--QVDNKLHLVKPHLSKVLP 1283
>gi|427791653|gb|JAA61278.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 947
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 63/86 (73%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +Y+SL+R++LDYG +Y SA+ +L++L+PV +L +RL+TGAFR+SPV SL E+ E
Sbjct: 780 LLNLYRSLVRTRLDYGAIIYQSATPTALKMLDPVHHLGIRLSTGAFRTSPVESLYVESNE 839
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPN 87
+L ++R +LS Y K + + HP+
Sbjct: 840 WSLHLQRSLLSFVYYLKVNAEKEHPS 865
>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]
Length = 502
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 87/181 (48%), Gaps = 10/181 (5%)
Query: 97 VRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
+ KY N+ DGSK+ V CA T I +FGL SI+ AEL A+ Q+L+ I
Sbjct: 76 IDKYPGINI--YTDGSKSNNAVACAFTCSTYQI--QFGLPTQMSIYTAELIAIEQALIFI 131
Query: 157 KQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRV---QEELSSTESPVEFLWCPSHVGI 212
+ + I +DSLS L A+ N +P + + Q L V F+WCPSHVGI
Sbjct: 132 ETVKDEDQFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGI 191
Query: 213 AGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNS 272
GNE AD AKQA+ V L + K I+ W +W +NKL I+
Sbjct: 192 LGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDE--ETDNKLHSIQPV 249
Query: 273 I 273
I
Sbjct: 250 I 250
>gi|427791645|gb|JAA61274.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +YKSLIR++LDYG VY SA+ ++L++L+PV +L +RL+TGAFR+SPV SL E+ E
Sbjct: 597 LLNLYKSLIRTRLDYGAIVYQSAAPSALKMLDPVHHLGIRLSTGAFRTSPVESLYVESNE 656
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
+L ++R +S Y K + HP
Sbjct: 657 WSLHLQRCYMSFVYYLKVNADREHP 681
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D SK V A P V L+KN SIF AE +A+L + IKQL KA+I TD
Sbjct: 777 DASKTHTSVSYAAVGPSFSDVG--VLHKNTSIFTAEAYAILAAAKHIKQLKLPKAVIYTD 834
Query: 170 SLSCLQAIMNM-FHENPLVKRVQEELSST---ESPVEFLWCPSHVGIAGNETADEEA 222
SLS ++A+ M H+NP++ + L ++ + V W P H I GN ADE A
Sbjct: 835 SLSVVKALKTMKKHKNPVLVSLYTILCTSYAVKQRVVVCWVPGHREIPGNMLADELA 891
>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
Length = 498
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 76/275 (27%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+++++S IRS LDYG VY +A + L+ L VQN L
Sbjct: 47 LLQLFRSFIRSTLDYGSIVYGAARPSYLKRLGVVQNQAL--------------------- 85
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCA 121
R + L+ + +Y NS + T DGSK+E +
Sbjct: 86 -----RTEFLN-----------------------LLDRYPNSYIFYT-DGSKSEDAM--- 113
Query: 122 LTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF 181
S++ AEL A+ ++L +I L + +I TD LS + AI ++
Sbjct: 114 ------------------SVYTAELIAINETLTSIALLPYDEFVICTDFLSSILAISSID 155
Query: 182 HENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFD 238
+P V+ + ++ L+ + + F+WCPSHVGI GNETAD AKQA+ ++++ +
Sbjct: 156 LIHPYVQSILQKCTCLAGRDKRIIFIWCPSHVGIPGNETADTVAKQALGMNILNCHIPHT 215
Query: 239 EVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
+ K I +W ++W + NKL I+ I
Sbjct: 216 DFKPITCSFVKTQWQSEWDQET--GNKLHDIQPDI 248
>gi|427791289|gb|JAA61096.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 965
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 62/86 (72%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +YKSLIR++LDYG +Y SA+ ++L++L+PV +L +RL+TGAFR+SPV SL AE+ E
Sbjct: 790 LLNLYKSLIRTRLDYGAIMYQSAAPSALKMLDPVHHLGIRLSTGAFRTSPVESLYAESNE 849
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPN 87
+L ++R + Y K + HP+
Sbjct: 850 WSLHLQRSYTAFVYFLKVNGDKEHPS 875
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1121
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ ++ SLI+S+L+YGC VY SAS ++++L+PV +L +RLATGAFR+SPV SL E E
Sbjct: 781 LMSLFNSLIKSRLNYGCIVYQSASKTAVKMLDPVYHLGIRLATGAFRTSPVSSLYVEANE 840
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
+ + R+ + Y K SI HP
Sbjct: 841 WPMQLEREYCTLMYTLKVTSIPTHP 865
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D SK V A PE +R LN + SIF AE +A+L ++ I K++I TD
Sbjct: 963 DASKTRDSVSAAAVGPEFTTSER--LNVHTSIFTAEAYAILIAIKYILNHNITKSVIFTD 1020
Query: 170 SLSCLQAI-MNMFHENPLVKRVQEELSST---ESPVEFLWCPSHVGIAGNE---TADEEA 222
SLS ++A+ ++NP++ V+++L++ S + W P H GI GNE A
Sbjct: 1021 SLSVVRALHTGKPNKNPVLCDVEKQLTNAYRNTSEITVCWVPGHAGIDGNERADACAAVA 1080
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
Q N DV N + + ++K ++ + E W +W
Sbjct: 1081 AQKSNLDV--NSVPYQDLKALVHRNLRERWQKEW 1112
>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
Length = 619
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
+DGSK+E VGCA +D GL S++ AEL A+ ++L +I L + +I T
Sbjct: 1 MDGSKSEDAVGCAFH--SRDFNLALGLPCQMSVYTAELIAINETLTSIALLPYDEFVICT 58
Query: 169 DSLSCLQAIMNMFHENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
DS S + AI ++ + V+ + ++ L+ + + F+WCPSHVGI GNETAD A+QA
Sbjct: 59 DSFSSILAISSIDLIHSYVQSILQKCTNLAGRDKRIIFIWCPSHVGIPGNETADTLAQQA 118
Query: 226 INNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
++++ + + K I + +W ++ + NKL I+ I
Sbjct: 119 SGMNILNCPIPHTDFKPITRSFVETQWQSE--SDQETGNKLHDIEPDI 164
>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]
Length = 471
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
+Y +S + T DGSK+E V C+ + + L S+F +E+ A+L +L ++
Sbjct: 16 RYPDSTVFYT-DGSKSEDSVACSFF--SSRLKLKMKLPVQMSVFTSEIIAILSALRCVEA 72
Query: 159 LGTCKALII-TDSLSCLQAIMNMFHENPLVKRVQ---EELSSTESPVEFLWCPSHVGIAG 214
+I +DSLS + AI M +P V +V + +S E V F+WCPSHVGI G
Sbjct: 73 DNEQHQFVICSDSLSAIMAIHGMDVRHPYVLQVLYAIKSISQQEKIVVFMWCPSHVGIPG 132
Query: 215 NETADEEAKQAINN-DVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
NE AD AK+A+++ ++ + +++ +IKK W +W + NKL I +I
Sbjct: 133 NEMADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWDE--QHSNKLHSIHPTI 190
Query: 274 LP 275
P
Sbjct: 191 GP 192
>gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
Length = 1189
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 54/282 (19%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQI-LNPVQNLCLRLATGAFRSSPVVSLEA--ETGE 61
IY +++RS L YGC + ++Q L + +CL +GAF ++P +LEA +
Sbjct: 767 IYTTVVRSILAYGCVWWQKGEVRTIQSKLGHLHRMCLMAMSGAFSTTPTAALEAIFDVAP 826
Query: 62 PNLDIRRKILSSNYIAKTLSI-ENHPNIMRT----LNPL--------------------- 95
++ ++++ LS +Y L + E +P R+ L PL
Sbjct: 827 LHIYLKQEALSCSYRLWVLDLLEKNPVNRRSTHTSLFPLLVNWDKIVLAPSDLTIACNLP 886
Query: 96 -----------------YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKN 138
Y+ + ++N+ DGS E G + E + + + L +N
Sbjct: 887 YRTFTTQFPSREEWTSGYLERSISNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRN 946
Query: 139 ASIFHAELFALL---QSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLV--KRVQ-E 192
++F AE+FAL+ QS L + +G +DS + ++A+ + + LV R Q E
Sbjct: 947 CTVFQAEIFALMCGVQSALQQRVMGKV-IYFCSDSQAAIKALASANSRSKLVIACRTQIE 1005
Query: 193 ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNE 234
EL+S S V +W P H IAGNE ADE A+ ++D I E
Sbjct: 1006 ELNSVNS-VNLVWVPGHSSIAGNELADELARDGASHDFIGPE 1046
>gi|2736044|gb|AAB94039.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 488
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 121/291 (41%), Gaps = 42/291 (14%)
Query: 4 RIYKSLIRSKLDYGCPVYNSA-SSNSLQILNPVQNLCLRLATGAFRSSPVVSLEA----- 57
RIYK++I + YG + A S + LN +Q L T A+R++ +++
Sbjct: 121 RIYKTVIEKIISYGANTWTKALGSVEKKKLNSLQRTMLLSVTEAYRTTSTEAMQVIANIT 180
Query: 58 ----------------ETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYE 101
E G R I +S + HP + +
Sbjct: 181 PLDLILRAESKRADILECGGSATVSGRPIGASGIEMRPHKFATHPKNWTRVGWAEWHDRD 240
Query: 102 NSNMKPTIDGSKNEQGVGCALTIPEKD---IVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
+ ++ DGSK G G A + ++ F L+K+ + + AE A+L++ + +
Sbjct: 241 DYILQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKATMWFAE 300
Query: 159 LGTC---KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP---VEFLWCPSHVGI 212
C K II+DS S L+A+ +P ++ ++ +++ + ++ W H G
Sbjct: 301 --ECQGNKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKGHAGQ 358
Query: 213 AGNETADEEAKQAINNDVIHNELF-----FDEVKIIIKKKYTEEWNTKWVN 258
AGNE AD AK+A VI + + VK +IKK+ EW T+W
Sbjct: 359 AGNEMADRAAKEA----VISGQRYVMPRPVSWVKALIKKETLREWATRWAG 405
>gi|443724607|gb|ELU12531.1| hypothetical protein CAPTEDRAFT_208903 [Capitella teleta]
Length = 397
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 18/182 (9%)
Query: 97 VRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
+ KY N+ DGSK+ V CA T I +FGL SI+ AEL A+ Q+L+ I
Sbjct: 125 IDKYPGINI--YTDGSKSNDAVACAFTCSTYQI--QFGLPAQMSIYTAELIAIEQALIFI 180
Query: 157 KQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRV---QEELSSTESPVEFLWCPSHVGI 212
+ + I +DSLS L A+ N +P + + Q L V F+WCPSHVGI
Sbjct: 181 ETMKDEDQFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGI 240
Query: 213 AGNETADEEAKQAINNDVIHNEL----FFDEVKIIIKKKYTEEWNTKWVNISPNENKLRK 268
GNE AD AKQA+ V L + ++ +K EW+ + +NKL
Sbjct: 241 LGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLRQNEWDEE------TDNKLHT 294
Query: 269 IK 270
I+
Sbjct: 295 IQ 296
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 60/86 (69%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ +YKSLIR+ LDYG +Y SAS +L++L+P+ +L +RL+TGAF +SPV SL E+ E
Sbjct: 787 LMNLYKSLIRTCLDYGAIIYQSASPTALKMLDPIHHLGIRLSTGAFCTSPVESLYVESNE 846
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPN 87
+L ++R +S Y K + + HP+
Sbjct: 847 WSLQLQRSYMSFLYYLKVNADKEHPS 872
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D SK+ V A P L+ N SIF AE +A+L ++ I++L KA+I TD
Sbjct: 967 DASKSHTSVSYAAVGPS--FSDAGVLHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 170 SLSCLQAIMNM-FHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQ- 224
SLS ++A+ + H+N ++ + L + + V W P H I GN AD A
Sbjct: 1025 SLSVVKALKTLKKHKNSILVSLYSLVCTLYTAKQHVVVCWVPGHREIQGNVMADHLAAST 1084
Query: 225 ---AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIK 270
+ N + L ++K ++K+K W + W + NKL IK
Sbjct: 1085 HDCSANTSIAIPAL---DLKPLLKRKLRAYWQSTWDQQT--HNKLHVIK 1128
>gi|321462343|gb|EFX73367.1| hypothetical protein DAPPUDRAFT_253251 [Daphnia pulex]
Length = 159
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 118 VGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAI 177
CA TIP +D+ K + L N+SIF AEL A+ Q+L I I +DSL+ + AI
Sbjct: 35 AACAFTIPSRDVNKAWKLPDNSSIFSAELAAIRQALDYIYNFEIAVVNIFSDSLASVMAI 94
Query: 178 MNM-FHENPLVKRVQEELS---STESPVEFLWCPSHVGIAGNETADEEAKQAINNDV 230
N + L+K +++ +S S+ + F+W PSHV I GNE ADE A Q +++ V
Sbjct: 95 HNQRVDSHHLIKDIRQTVSNLLSSGTRTNFIWIPSHVTIPGNERADELATQCLSDPV 151
>gi|427791639|gb|JAA61271.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1004
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
ML I+ IR YGC VY SA+ ++L++L+P+ +L +RLATGAFR+SPV SL E+
Sbjct: 810 MLDPIHHLGIRXXXXYGCVVYRSAAPSALKMLDPIHHLGIRLATGAFRTSPVESLYVESD 869
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHP 86
E +LD++R LS Y S +HP
Sbjct: 870 EWSLDLQRSYLSFKYFLNVNSNADHP 895
>gi|443734745|gb|ELU18611.1| hypothetical protein CAPTEDRAFT_216906 [Capitella teleta]
Length = 252
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Query: 90 RTLNPLYVRKYENSNMKPT--------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASI 141
+T NP Y + E N+ DGSK++ V C+ T I R L +ASI
Sbjct: 95 KTANPNYTLRNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATADNLRIQIR--LPDSASI 152
Query: 142 FHAELFALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES 199
F AEL A+ Q +LL + LI TDSLS LQAI N ++P V ++ E+ +
Sbjct: 153 FSAELLAIYQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHK 212
Query: 200 PVEFL---WCPSHVGIAGNETADEEAKQAIN 227
+L WCPSHVG+ GNE AD AK+A++
Sbjct: 213 KGIYLVMAWCPSHVGVMGNERADLLAKEALS 243
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 11/162 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL-LTIKQLGTCKALIIT 168
DGSK A+ + I+ L SIF AE FA+L++ K G K++I T
Sbjct: 968 DGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFASKNAG--KSVICT 1025
Query: 169 DSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ---- 224
DSLS L AI N H +P + V+ LSS + LW PSH GI GNE AD+ A++
Sbjct: 1026 DSLSSLSAIRNWNHNDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELADKAAQEMRLT 1085
Query: 225 -AINNDVIHNELFFDEVKIIIKKKYTEEWNT---KWVNISPN 262
+I +++ +K+ +K+K EW ++ +I+PN
Sbjct: 1086 PSILFTPFNSKDLKSRIKLYLKEKKLSEWALFMHRYQSINPN 1127
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
LI I ++L+ SK+DYG P++ + + L+ L + +R A AF +SPV AE+G
Sbjct: 792 LIDITRALMLSKIDYGLPIFGWCAKSHLKKLQVPYHGAVRRAIHAFPTSPVACTLAESGL 851
Query: 62 PNLDIR 67
P++ R
Sbjct: 852 PSIQSR 857
>gi|90409437|ref|ZP_01217503.1| hypothetical protein PCNPT3_00010, partial [Psychromonas sp. CNPT3]
gi|90309457|gb|EAS37676.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
Length = 776
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 131/306 (42%), Gaps = 75/306 (24%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
++R+YK+ + S L+YG ++ AS+ + L +Q LRLA G+ +S+ +SLE TG
Sbjct: 461 VLRLYKTTVLSVLEYGSICFHWASNTQILKLERIQYRGLRLALGSMKSTHNMSLEVMTGV 520
Query: 62 PNLDIRRKILS---------------SNYIA--------KTLSIEN-------HPNIMRT 91
L +R ++LS N+IA K ++I N HP+ +
Sbjct: 521 MPLRLRFEMLSLRLLVRSSVSNPLIIENFIALIEAGSKSKIINIYNDFVALQVHPSAPQA 580
Query: 92 LNPLYVRKYENS-----------------NMKPTI--------------------DGSKN 114
+N + + +S +++P + DGS +
Sbjct: 581 VNRAALPECYSSIVSTDSSLREEIKVIPNDLRPRVVPGIFVNRYGHIDKMNQFYTDGSSS 640
Query: 115 EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCL 174
E+G G + + F L + ++F AEL A+ +LL I + I TDSLS +
Sbjct: 641 EEGTG--FGVFSETTGAFFKLRQPCTVFTAELAAIFYALLLIAASPPDQYFIFTDSLSAI 698
Query: 175 QAIMN---MFHENPLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEAKQAINN 228
+A+ + ++ + ++ E L S + +W PSH GI GNE AD AK +
Sbjct: 699 EALKTPRAVKSQDFFIVKIIELLGSLFDKAFRISLIWVPSHCGIPGNEKADSLAKTGVKE 758
Query: 229 DVIHNE 234
++
Sbjct: 759 GAFYDR 764
>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
Length = 1234
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 71/296 (23%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ + K+ + +KL+YG +Y A + L L N +RLA GA+RS+P+ +L E+
Sbjct: 781 LLNVAKATVIAKLEYGLFLYGHAPKSILNKLKTPFNSAIRLALGAYRSTPINNLLYESNI 840
Query: 62 PNLDIRRKI----LSSN-----------------YIAKTLSIENH--------------- 85
P+L+++R + LS N Y KTLSI +
Sbjct: 841 PSLEMKRDLQIAKLSQNLSFCKNRPIHKFVRHKKYKKKTLSIIDQTIKLSLELNLPYKPI 900
Query: 86 -----------PNIMRT---------LNPLYVRK---YENSNMKPT----IDGSKNEQGV 118
PN++ T +P RK + + +KP DGSK +
Sbjct: 901 KLHKYKPSWDLPNLIDTSLRGHKKQETSPESYRKLFEHTKNKLKPHSFIFTDGSK----I 956
Query: 119 GCALTIP---EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQ 175
C +T + +I+K+ L +S+ +E A+L+++ IK K I DSLS +
Sbjct: 957 NCIITFAITTDTNILKQGILPPYSSVLTSETIAILEAIELIKT-RRGKFGIWFDSLSAID 1015
Query: 176 AIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231
+I N + + R++ ++ ++ +W P H GI GNE AD+ AK A N +I
Sbjct: 1016 SIKNPNNNSFYPNRIRSLITQLAPKIKIMWIPGHSGIIGNELADQAAKLASNMPLI 1071
>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
Length = 1208
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 129/328 (39%), Gaps = 68/328 (20%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSP--------- 51
+L+RI KS+I S+L YG ++ A + L P N +R+ G S+P
Sbjct: 792 ILVRIAKSIINSRLFYGIELFGLAGDTLITRLAPTYNQSIRIIAGLLPSTPADAACVELG 851
Query: 52 ----------------VVSLEAETGEPNLDIRRK-------------------------- 69
+ LE TG+ + + R+
Sbjct: 852 VLPFRYQATETLCCRTIAYLEKTTGDHEVFLLREGNRALDSLAHQELPPVEQVHWVGARR 911
Query: 70 ------ILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALT 123
++ ++ + + +N P + + L KY N + + T DGSK G +T
Sbjct: 912 WDAPDFLVDTSVSKRFRAGDNSPAMRSHVTELLASKYRNYHHRFT-DGSKYLDRTGFGVT 970
Query: 124 IPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE 183
+K R L S+F AE A+L + T C +I+DS S L I +
Sbjct: 971 DIDKSYFYR--LPDQCSVFSAEAAAILLASTTPAPKPIC---VISDSASVLATINSSSTR 1025
Query: 184 NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII 243
+P ++ VQ+ ++ S FLW P H GI GN AD A + + + ++K
Sbjct: 1026 HPWIQAVQK---NSPSQTVFLWVPGHCGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNW 1082
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKN 271
K + W +WVN+ + +RKIK
Sbjct: 1083 TKSQIRSSWALEWVNL--RDKFIRKIKG 1108
>gi|443727119|gb|ELU14007.1| hypothetical protein CAPTEDRAFT_217934 [Capitella teleta]
Length = 664
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 72/124 (58%), Gaps = 9/124 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGT---CKALI 166
DGSK++ V C+ T I R L +ASIF AEL A+ Q +LT+ + T + LI
Sbjct: 223 DGSKSDSAVACSATADNLRIQIR--LPDSASIFSAELLAIYQ-VLTLLECSTNDQQQFLI 279
Query: 167 ITDSLSCLQAIMNMFHENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDSLS LQAI N ++P V ++ E+ L + WCPSHVG+ GNE AD AK
Sbjct: 280 ATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIDLVMAWCPSHVGVMGNERADLLAK 339
Query: 224 QAIN 227
+A++
Sbjct: 340 EALS 343
>gi|189242251|ref|XP_001808188.1| PREDICTED: similar to pol-like protein [Tribolium castaneum]
Length = 1808
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 55/86 (63%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
+L+R+YK LIRSKLDYG Y SA + L LNP+QN +R A GA+ ++PV SL A +
Sbjct: 1185 ILLRLYKILIRSKLDYGATAYASAKPHILNKLNPIQNTSIRTALGAYCTTPVESLYALSD 1244
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHP 86
P+L+ RR L Y AK + + +P
Sbjct: 1245 IPSLEARRSELILRYAAKISANKTNP 1270
>gi|443723447|gb|ELU11866.1| hypothetical protein CAPTEDRAFT_187673 [Capitella teleta]
Length = 225
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
+Y +S + T DGSK+E V C+ + + L S+F +EL A+L +L ++
Sbjct: 71 RYPDSTLFYT-DGSKSEDSVACSFF--SNRLRLKMKLPVQMSVFTSELIAILSALKCVEV 127
Query: 159 LGTCKALII-TDSLSCLQAIMNMFHENPLVKRVQEELSST---ESPVEFLWCPSHVGIAG 214
+I +D+LS + AI M +P V +V + S E V F+WCP HVGI G
Sbjct: 128 DNEQHQFVICSDALSAIMAIHGMDVRHPYVLKVLYAIKSIYQQEKIVVFMWCPPHVGIPG 187
Query: 215 NETADEEAKQAINN 228
NE AD AK+A+++
Sbjct: 188 NEMADTLAKEALSS 201
>gi|443713753|gb|ELU06453.1| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]
Length = 266
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII-T 168
DGSK+E V A + + + L S+F +E+ A+L +L ++ +I +
Sbjct: 81 DGSKSEDSV--ARSFFSSRLKLKMKLPVQMSVFTSEIIAILSALKCLEADNEQHQFVICS 138
Query: 169 DSLSCLQAIMNMFHENPLVKRVQ---EELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
DSLS + AI M +P V +V + +S E V F+WCPSHVGI GNE A A++A
Sbjct: 139 DSLSAIMAIHGMDVHHPYVLQVLYAIKSISQQEKIVVFMWCPSHVGIPGNEMAHTLAEKA 198
Query: 226 INN-DVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILP 275
+++ ++ + +++ +IKK +W +W + NKL I +I P
Sbjct: 199 LSSTNLAELPVPASDLRGLIKKYIRSQWQHEWEE--QHNNKLHSIHPTIGP 247
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 140/345 (40%), Gaps = 90/345 (26%)
Query: 2 LIRIYKSLIRSKLDYGCPV-------YNSASSNSLQILNPVQNLCLRLATGAFRSS--PV 52
L ++Y+++I ++ YGC Y S S + + +Q ++ TGAFR++ P
Sbjct: 1276 LRQVYRAMIIPQMLYGCSAWHIPGNGYTSRGSAMINAIKRIQRRAAQIITGAFRTTAGPA 1335
Query: 53 VSLEAE------------------------------TGEPNLDIRRK------------I 70
V +EA + E N RK I
Sbjct: 1336 VDVEAHLLPIQQQLEQTALEATMRIRSSPLHNDMATSSESNTRTNRKRDALSPLDRFSGI 1395
Query: 71 LSSNYIAKTLSIE-NHPNIMRTL--NPLYVRK-------YENSNMKPTI-----DGSKNE 115
L Y K +E P+++ PL K E+ M+PT DGS
Sbjct: 1396 LEHKYNVKLNQLEKRQPHVVPPWWTPPLICIKDSANDAIKEHDTMEPTTMRIYTDGSSIN 1455
Query: 116 QGVGCALTIPE-KD---IVKR---FGLNKNASIFHAELFAL---LQSLLTIKQLGTC--K 163
VG A P +D +KR G++ ++++ AEL L LQ ++ I GT K
Sbjct: 1456 GHVGAAAVAPSLQDNGICMKRTQYMGVSSTSTVYSAELKGLVLALQMVIDIHATGTAPGK 1515
Query: 164 ALIITDSLSCLQAIMNMFHENP---LVKRVQ--EELSSTESPVEFLWCPSHVGIAGNETA 218
I TD+ + +QA+ N + + LV+ +Q + L V+F W P+HVG+ GNE A
Sbjct: 1516 CAIFTDNQAAVQAVRNPKNSSGQYILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEA 1575
Query: 219 DEEAKQ----AINNDVIHNEL---FFDEVKIIIKKKYTEEWNTKW 256
D AK+ A+N + +L K I++ EW T W
Sbjct: 1576 DRLAKRAADPALNTEQPEPDLIRTLLATTKSTIRQAMKGEWETSW 1620
>gi|357622609|gb|EHJ74035.1| putative pol-like protein [Danaus plexippus]
Length = 836
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
+L+ +YKSL+RS +Y + + + L +QN CLR+ GA R++P+VS++ E
Sbjct: 630 ILLTLYKSLVRSHFEYAYFCF-AGVGTIVDKLEKIQNKCLRIIMGAMRTTPIVSMQVECN 688
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPNIMR 90
P L +R K L S + A+ LSI NHP +++
Sbjct: 689 IPPLALRFKYLQSKFFARLLSISNHPLLVK 718
>gi|443734398|gb|ELU18400.1| hypothetical protein CAPTEDRAFT_213104 [Capitella teleta]
Length = 330
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK VG TIP +I ++ +F AE A+ L+ + Q I++D
Sbjct: 157 DGSKQGSSVGYGFTIPAYNISTSVRISDCTDVFTAEAKAIEACLMLLAQRQISPVTILSD 216
Query: 170 SLSCLQAIMNMFHENPLVKRVQEEL---SSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
SLS L+A+ N + ++ +Q L +++ V FLW PSH GI GNE AD AK ++
Sbjct: 217 SLSVLEAMQNT-SSSTVISDIQVALNVAANSNVDVSFLWIPSHCGIQGNEAADALAKASL 275
Query: 227 NNDVIHNELFF 237
++ + + +
Sbjct: 276 SSQSVRESVTY 286
>gi|427792791|gb|JAA61847.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 650
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A T+P+ + KRF + S AEL + Q+ I Q + D
Sbjct: 365 DGSVTQNSSAAAFTVPDMGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLFCD 424
Query: 170 SLSCLQAIMNMFHE----NPLVKRVQ---EELSSTESPVEFLWCPSHVGIAGNETADEEA 222
S LQ I N + +PLV + E S + + W PSH GIAGNE AD EA
Sbjct: 425 SKPALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEA 484
Query: 223 KQA-INNDVIHNELFFDEVKI------IIKKKYTEEWN 253
K A +V+ + F I IK T WN
Sbjct: 485 KMAHTTGEVV--SIHFSRYDINALLSKAIKTSMTRLWN 520
>gi|443706301|gb|ELU02423.1| hypothetical protein CAPTEDRAFT_206267 [Capitella teleta]
Length = 357
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 25 SSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYIAKTLSIEN 84
+ N L ILN L A+G+F V+ L + ++D ++ + + +
Sbjct: 158 AGNDLSILNTGSQTYLHPASGSF---TVIDLSLCSPSAHIDFTWEVDTDQHGSDHF---- 210
Query: 85 HPNIMRTLNPLYVRKYENSNMKPTI-DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH 143
P+++ SN K DGSK++ V + T I R L+ +ASIF
Sbjct: 211 ---------PIFI-----SNHKVIFTDGSKSDSAVAFSATADNLRIQIR--LSDSASIFS 254
Query: 144 AELFALLQSLLTIKQLGTCKA--LIITDSLSCLQAIMNMFHENPLVKRVQEE---LSSTE 198
AEL + Q L ++ L + LI T+SLS LQA+ N ++P V ++ E+ L
Sbjct: 255 AELLDIYQVLTLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKG 314
Query: 199 SPVEFLWCPSHVGIAGNETADEEAKQAIN 227
+ WCPSHVG+ GNE AD AK+A++
Sbjct: 315 IDLVISWCPSHVGVMGNERADLLAKEALS 343
>gi|443686560|gb|ELT89792.1| hypothetical protein CAPTEDRAFT_191632 [Capitella teleta]
Length = 257
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 17 GCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYI 76
G V + + N L ILN L A+G+F V+ L + ++D ++ + +
Sbjct: 50 GRVVEDFIAGNDLSILNTGSQTYLHPASGSFT---VIDLSLCSPSAHIDFTWEVDTDQHG 106
Query: 77 AKTLSIENHPNIMRTLNPLYVRKYENSNMKPTI-DGSKNEQGVGCALTIPEKDIVKRFGL 135
+ P+++ SN K DGSK++ V + T I R L
Sbjct: 107 SDHF-------------PIFI-----SNHKVIFTDGSKSDSAVAFSATADNLRIQIR--L 146
Query: 136 NKNASIFHAELFALLQSLLTIKQLGTCKA--LIITDSLSCLQAIMNMFHENPLVKRVQEE 193
+ +ASIF AEL + Q L ++ L + LI T+SLS LQA+ N ++P V ++ E+
Sbjct: 147 SDSASIFSAELLDIYQVLTLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKILEK 206
Query: 194 ---LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
L + WCPSHVG+ GNE AD AK+A++
Sbjct: 207 CTLLHKKGIDLVISWCPSHVGVMGNERADLLAKEALS 243
>gi|357610240|gb|EHJ66888.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 476
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 98 RKYENSNMKPTIDGSKNEQG-VGCALTIPEKD---IVKRFGLNKNASIFHAELFALLQSL 153
R + N+ T DGSK E G VG A ++ + K+F L+ + ++F AEL A+L++
Sbjct: 185 RAHPNTTHTFT-DGSKLEDGTVGAAFVSYDRGRNPVSKKFKLHNSCTVFQAELLAILKAC 243
Query: 154 LTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
+I +DS + + AI N + +PLV ++ + T +EF W +HVGI
Sbjct: 244 EWASSNQHTSTVIYSDSSAAILAIQNRSNTHPLVAKIHSTVHHTSGSIEFAWVKAHVGIV 303
Query: 214 GNE 216
GNE
Sbjct: 304 GNE 306
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats.
Identities = 87/345 (25%), Positives = 135/345 (39%), Gaps = 90/345 (26%)
Query: 2 LIRIYKSLIRSKLDYGCPV-------YNSASSNSLQILNPVQNLCLRLATGAFRSS--PV 52
L ++Y+++I ++ YGC Y S S + + +Q ++ TGAFR++ P
Sbjct: 1436 LRQVYRAMIIPQMLYGCSAWHIPGNGYTSRGSAMINAIKRIQRRAAQIITGAFRTTAGPA 1495
Query: 53 VSLEAE------------------------------TGEPNLDIRRK------------I 70
V +EA + E N RK I
Sbjct: 1496 VDVEAHLLPIQQQLEQTALEATMRIRSSPLHNDMATSSESNTRTNRKCDALSPLDRFSGI 1555
Query: 71 LSSNYIAKTLSIEN-HPNIMRT--LNPLYVRK-------YENSNMKPTI-----DGSKNE 115
L Y + +E P+++ PL K E+ M+PT DGS
Sbjct: 1556 LEHKYNVQLNRLEKRQPHVVPPWWTPPLICIKDSANDAIKEHDTMEPTTMRIYTDGSSIN 1615
Query: 116 QGVGCALTIPE-------KDIVKRFGLNKNASIFHAELFAL---LQSLLTIKQLGTC--K 163
VG A P + G + ++++ AEL L LQ ++ I GT K
Sbjct: 1616 GHVGAAAVAPSLQDNGICMQRTQYMGASSTSTVYSAELKGLVLALQMVIDIHATGTAPGK 1675
Query: 164 ALIITDSLSCLQAIMNMFHENP---LVKRVQ--EELSSTESPVEFLWCPSHVGIAGNETA 218
I TD+ + +QA+ N H + LV+ +Q + L V+F W P+HVG+ GNE A
Sbjct: 1676 CAIFTDNQAAVQAVRNPKHSSGQYILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEA 1735
Query: 219 DEEAKQA----INNDVIHNEL---FFDEVKIIIKKKYTEEWNTKW 256
D AK+A +N + +L K I++ EW T W
Sbjct: 1736 DRLAKRAADPTLNTEQPEPDLIRTLLASTKSTIRQAMKGEWETSW 1780
>gi|427782325|gb|JAA56614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1173
Score = 67.4 bits (163), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A T+P+ + KRF + S AEL + Q+ I Q + D
Sbjct: 888 DGSVTQNSSAAAFTVPDMGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLFCD 947
Query: 170 SLSCLQAIMNMFHE----NPLVKRVQ---EELSSTESPVEFLWCPSHVGIAGNETADEEA 222
S LQ I N + +PLV + E S + + W PSH GIAGNE AD EA
Sbjct: 948 SKPALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEA 1007
Query: 223 KQA 225
K A
Sbjct: 1008 KMA 1010
>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]
Length = 400
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
IDGSK++ V C+ T I L +ASIF AEL A+ + L ++ + + +
Sbjct: 12 IDGSKSDSAVACSATADNLQI----RLPDSASIFSAELLAIYKVLTLLECSASSSSSTDS 67
Query: 169 DSLSCLQAIMNMFHENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
Q I N ++P V ++ E+ L + WCPSHVG+ GNE AD AK+A
Sbjct: 68 LLSL--QGIGNFNIKHPYVVKILEKCTLLHKKGIDLVMTWCPSHVGVMGNERADLLAKEA 125
Query: 226 INNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
++ + + K I + Y E+W +W S ENKL I+ ++
Sbjct: 126 LSFTTCTIRIPSSDFKPITHEFYKEKWQEQWS--SEQENKLYCIQPTL 171
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAI 226
V F+WCPS+VGI GNE AD AKQA+
Sbjct: 268 VVFIWCPSYVGILGNEVADRLAKQAL 293
>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
Length = 364
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE---LSS 196
S++ AEL A+ ++L +I L + +I TDSLS + AI ++ +P V+ + ++ L+
Sbjct: 2 SVYTAELIAINETLTSIALLPYDEFVICTDSLSSILAISSIDLIHPYVQSILQKCTCLAG 61
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+ + F+WCPSHVGI GNETAD AKQA+ ++++ + + K I + +W ++W
Sbjct: 62 RDKRIIFIWCPSHVGIPGNETADTLAKQALGMNILNCPIPHTDFKPITRSFVKTQWQSEW 121
Query: 257 VNISPNENKLRKIKNSI 273
NKL I+ I
Sbjct: 122 DQ--ETGNKLHDIQPDI 136
>gi|358376822|dbj|GAA93326.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 815
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + QL A I++DS+S LQ I N ++++
Sbjct: 549 SVYTAELMAIYYAIGLVFQLAQRNQRSAETNHEPATILSDSMSALQVIKNSWNKSGQCII 608
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ EL + P+ W P H G GNE AD AK A+ D H + K
Sbjct: 609 QAIHHSAGELKARGIPLRLQWVPGHCGDPGNEAADRLAKDAVGIDKKHPFKHLLSREKGY 668
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I++K +EW +W S N LR+I LPSS
Sbjct: 669 IRRKIYQEWEQEW-RTSKNGGHLRRIDRG-LPSS 700
>gi|443690773|gb|ELT92824.1| hypothetical protein CAPTEDRAFT_204342 [Capitella teleta]
Length = 294
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 8/157 (5%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK+++ +GC +D GL+ S++ AEL A+ ++L +I L + +I TD
Sbjct: 101 DGSKSKEAIGCGFH--SRDFNLALGLSCQMSVYTAELIAINETLTSIALLPYDEFVICTD 158
Query: 170 SLSCLQAIMNMFHENPLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
SLS + AI ++ +P V+ + ++ L+ + + F+WCPSHVGI NET AKQA+
Sbjct: 159 SLSSILAISSIDFIHPYVQSIFQKCTCLAGRDKRIIFIWCPSHVGIPENETL---AKQAL 215
Query: 227 NNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNE 263
++++ + K I + + ++W + NE
Sbjct: 216 GMNILNCPIPHTAFKPIARSFVKTQRQSEWDQETGNE 252
>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
Length = 1682
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 38/289 (13%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS--NSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
IY + I + Y V+ SA + ++ L VQ + A+R+ + S G
Sbjct: 1272 IYTATIEPIVLYAASVWVSAVAKLGVIKQLAAVQRGIAQKVCKAYRTVSLNSALILAGML 1331
Query: 63 NLDIRRKILSSNYIAK---------TLSIEN--------HPNIMRTLNPLYVRKYE---- 101
LD+R + +S Y AK IE HP L + + E
Sbjct: 1332 PLDLRVREAASLYEAKKGQLLPGLADAEIEQMTPFAEMPHPVERADLQIVCLEDQEQVDG 1391
Query: 102 NSNMKPTI--DGSKNEQGVGCALTIPEKDI---VKRFGLNKNASIFHAELFALLQSLLTI 156
NS+ I DGSK VG AL+I + D ++ L+ +++ AEL AL + +
Sbjct: 1392 NSDYDECIFTDGSKIGGKVGAALSIWKGDTETKTRKLALSNYCTVYQAELLALCVATTEV 1451
Query: 157 KQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSST---ESPVEFLWCPSHVGIA 213
++ + + +DS+S LQ I N +PL ++ + ++ V W +H G+
Sbjct: 1452 RKSKSKSFGVYSDSMSALQTITNYDSPHPLAVEARQNIKASLLQGKAVTLHWIKAHAGLK 1511
Query: 214 GNETADEEAKQAINN-----DVIHNELFFDEVKIIIKKKYTEEWNTKWV 257
GNE AD AK+A N D + F VK ++ EEWN ++
Sbjct: 1512 GNERADGLAKEAAENSRKRPDYDRCPISF--VKRSLRMTTLEEWNRRYT 1558
>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1301
Score = 64.7 bits (156), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + QL A I++DS+S LQAI N ++++
Sbjct: 1014 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1073
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + EL + P+ W P H G GNETAD AK+A+ + H K
Sbjct: 1074 QAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGY 1133
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I+ + ++EW +W S LRKI + LPSS
Sbjct: 1134 IRDRISKEWEQEW-RTSKKGGHLRKIDRT-LPSS 1165
>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
Length = 486
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 81 SIENHPNIM-RTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKR---FGLN 136
+IE H NI+ R P+ + DGS VG A P K ++ R G
Sbjct: 168 AIETHRNILNRAPRPIAL----------YTDGSGINGRVGAAAICP-KYLISRSSYMGQQ 216
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEEL 194
++++ AEL +L +L+ I Q A+I TD+ + LQA+ N ++ +++ + L
Sbjct: 217 SESTVYVAELQGILLALVIILQRQMQHAVIFTDNQATLQALRNPGSQSGQYILEAIIMAL 276
Query: 195 SSTESP---VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEE 251
+ V F W P+H G+ GNE AD AK+A I ++ +K++ E
Sbjct: 277 NKGRKAGLNVHFRWIPAHRGVEGNEQADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEV 336
Query: 252 WNTKWVN 258
N +W N
Sbjct: 337 VNARWEN 343
>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + QL A I++DS+S LQAI N ++++
Sbjct: 1320 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1379
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + EL + P+ W P H G GNETAD AK+A+ + H K
Sbjct: 1380 QAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGY 1439
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I+ + ++EW +W S LRKI + LPSS
Sbjct: 1440 IRDRISKEWEQEW-RTSKKGGHLRKIDRT-LPSS 1471
>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + QL A I++DS+S LQAI N ++++
Sbjct: 1320 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1379
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + EL + P+ W P H G GNETAD AK+A+ + H K
Sbjct: 1380 QAIHQAAGELKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGY 1439
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I+ + ++EW +W S LRKI + LPSS
Sbjct: 1440 IRDRISKEWEQEW-RTSKKGGHLRKIDRT-LPSS 1471
>gi|328700126|ref|XP_001944214.2| PREDICTED: alcohol dehydrogenase [NADP+]-like [Acyrthosiphon pisum]
Length = 514
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 11 RSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKI 70
+S LDYG P+Y ++ + +L +L + N LR+A+GAFRSSP+ S+ TGE L+ RR
Sbjct: 310 KSILDYGSPLYMTSRNTALTMLEAIHNADLRMASGAFRSSPINSILNITGEQPLNNRRNQ 369
Query: 71 LSSNYIAKTLSIENHPNIMRTLNPLYVRKYENS 103
L Y +T + N P N + + N+
Sbjct: 370 LMLQYAVRTATDPNKPTYSTVFNNRFKNTFNNN 402
>gi|321461852|gb|EFX72880.1| hypothetical protein DAPPUDRAFT_325810 [Daphnia pulex]
Length = 268
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKN--EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ ++ CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 92 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMD 151
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A+I +DS S + AI N EN + ++E L S+ + W PSH GI G
Sbjct: 152 DCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEG 211
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE D A N + +HN L E+ II+ +
Sbjct: 212 NERTDRLAATECNTQDGEEVHNSLSPKEMVSIIRANW 248
>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
Length = 804
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 81 SIENHPNIM-RTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKR---FGLN 136
+IE H NI+ R P+ + DGS VG A P K ++ R G
Sbjct: 168 AIETHRNILNRAPRPIAL----------YTDGSGINGRVGAAAICP-KYLISRSSYMGQQ 216
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEEL 194
++++ AEL +L +L+ I Q A+I TD+ + LQA+ N ++ +++ + L
Sbjct: 217 SESTVYVAELQGILLALVIILQRQMQHAVIFTDNQATLQALRNPGSQSGQYILEAIIMAL 276
Query: 195 SSTESP---VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEE 251
+ V F W P+H G+ GNE AD AK+A I ++ +K++ E
Sbjct: 277 NKGRKAGLNVHFRWIPAHRGVEGNEQADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEV 336
Query: 252 WNTKWVN 258
N +W N
Sbjct: 337 VNARWEN 343
>gi|321456611|gb|EFX67714.1| hypothetical protein DAPPUDRAFT_330770 [Daphnia pulex]
Length = 316
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKN--EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ ++ CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 21 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMD 80
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQEELSSTESP---VEFLWCPSHVGIAG 214
C +A+I +DS S + AI N EN + +E +SS +S W PSH GI G
Sbjct: 81 DCPPEAIIYSDSSSAITAISSNSLSENEAITATREIISSLKSSGTRTRLTWIPSHTGIEG 140
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE AD A N + +HN L E+ II+ +
Sbjct: 141 NERADRLAATECNTQDGEEVHNSLSPKEMVSIIRANW 177
>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
Length = 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 112 SKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171
SK+ +G A P+ I K++ L++ SIF AE A++ ++ I + G ++ I TDS
Sbjct: 1 SKSLPHLGAAFYSPDIPIQKKYKLDRYFSIFSAECIAIMCAMDYILEEGIKRSAIFTDSR 60
Query: 172 SCLQAIMNMFHENP---LVKRVQEELSSTES---PVEFLWCPSHVGIAGNETAD----EE 221
S ++ + N + L+ ++ +L S V +W PSHVGI GNETAD E
Sbjct: 61 SMVETLSNGLLDRDLSYLILALKNKLRSAYVQNLDVVIVWVPSHVGILGNETADLLAGEA 120
Query: 222 AKQAINNDVI--HNELFFDEVKIIIKKKYTEE 251
A+Q + D + H +L+ ++K+KY +
Sbjct: 121 ARQEESVDYLPPHTDLY-----SLVKEKYFSD 147
>gi|321461849|gb|EFX72877.1| hypothetical protein DAPPUDRAFT_325814 [Daphnia pulex]
Length = 308
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ + CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 135 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMD 194
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A+I +DS S + AI N EN + ++E L S+ + W PSH GI G
Sbjct: 195 DCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEG 254
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE AD A N + +H+ L E+ II+ +
Sbjct: 255 NERADRLAATECNTQDGEEVHSSLSPKEMVSIIRANW 291
>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
Length = 2000
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 133/346 (38%), Gaps = 89/346 (25%)
Query: 2 LIRIYKSLIRSKLDYGCPV-------YNSASSNSLQILNPVQNLCLRLATGAFRSS---- 50
L ++Y+++I ++ YGC Y S + + +Q ++ TGAF+++
Sbjct: 1411 LRQVYRAMIIPQMLYGCSAWYIPGTGYTGRGSAMINAIRRIQRRAAQIITGAFQTTAGAA 1470
Query: 51 --------PV------VSLEA-----------ETGEPNLDIRRKILSSNYIAKTLSIENH 85
PV +LEA + P D RR S + +E+
Sbjct: 1471 VDVEAHLLPVQQQLEQTALEATMRMRTSPLHNDMAVPGGDNRRSDTQSPLDRFSSILEHK 1530
Query: 86 PNIM---------RTLNPLYVRKY------------ENSNMKPTI-----DGSKNEQGVG 119
N+ + P + + E++ ++P DGS VG
Sbjct: 1531 YNVQLNRLEKRQPHVVPPWWTPPFICIKDSAEEAIKEHNTIEPATICIYTDGSGINNHVG 1590
Query: 120 CALTIPE----KDIVKR---FGLNKNASIFHAELFALLQSLLTIKQLGTC-----KALII 167
A P KR G + ++++ AEL L+ +L I L K I
Sbjct: 1591 AAAVAPSLQANGGYTKRTQYMGPSSTSTVYAAELRGLVLALEIILDLHATGATPRKCAIF 1650
Query: 168 TDSLSCLQAIMNMFHENP---LVKRVQ--EELSSTESPVEFLWCPSHVGIAGNETADEEA 222
TD+ + +QAI N H + L++ +Q + L + V+F W P+HVG+ GNE AD A
Sbjct: 1651 TDNQAAIQAIRNPKHSSGQYILLEAIQALDMLRNFGWEVQFRWIPAHVGVPGNEEADRMA 1710
Query: 223 KQAINNDVIHN----------ELFFDEVKIIIKKKYTEEWNTKWVN 258
K+A D N + K I+++ EW T W N
Sbjct: 1711 KEATGVDPGINIERLPETDPLRILTATTKSTIRQRMKHEWETSWEN 1756
>gi|321451947|gb|EFX63450.1| hypothetical protein DAPPUDRAFT_335441 [Daphnia pulex]
Length = 316
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKN--EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ ++ CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 21 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMD 80
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A+I +DS S + AI N EN + +E L S+ + W PSH GI G
Sbjct: 81 DCPPEAIIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEG 140
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE AD A N + +HN L E+ II+ +
Sbjct: 141 NERADRLAATECNTQDGEEVHNSLSPKEMVSIIRANW 177
>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1193
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSL-----LTIKQLGTCK-----ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + ++ T A I++DS+S LQAI N +++
Sbjct: 922 SVYAAELMAIYYAISLVLKIALENWDTTASQQEPATILSDSMSALQAISNARNKSGQRII 981
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
V++ EL + P+ W P H G GNE AD AK+A+ D H + K
Sbjct: 982 QAVRQSARELKARGIPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSREKGF 1041
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
I + EEW W S N LR+I ++
Sbjct: 1042 IHNRIQEEWERGW-KTSKNGGHLRRIDRNL 1070
>gi|307200768|gb|EFN80823.1| hypothetical protein EAI_12282 [Harpegnathos saltator]
Length = 134
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
+++ +YK+LIRS LD+GC Y Q L+ +Q + G +++P + +G
Sbjct: 49 IMLSVYKNLIRSVLDWGCQAYLDLQERKAQTLDRLQFAAFNIILGLMKTTPTNVILDLSG 108
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHP 86
E L +RR L+ YIAK LS +HP
Sbjct: 109 ERPLPVRRSFLAKKYIAKALSARHHP 134
>gi|321456607|gb|EFX67710.1| hypothetical protein DAPPUDRAFT_261174 [Daphnia pulex]
Length = 268
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ + CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 92 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMD 151
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A+I +DS S + AI N EN + ++E L S+ + W PSH GI G
Sbjct: 152 DCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEG 211
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE D A N + +HN L E+ II+ +
Sbjct: 212 NERTDRLAATECNTQDGEEVHNSLSPKEMVSIIRANW 248
>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
Length = 1219
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL-LTIKQLGTCKALIIT 168
DGSK + A+T E D++K L +S+ +E A+L+++ LT + G K +I +
Sbjct: 954 DGSKINYTISFAITT-ETDVLKYGILPPYSSVLTSETIAILEAIELTKNRRG--KFIICS 1010
Query: 169 DSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
DSLS + +I N + + R++ ++ ++ +W P H GI GNE AD+ AK A
Sbjct: 1011 DSLSAVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHSGIKGNELADQAAKSA 1067
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ + K+ I +KL+YG +Y A + L + N +RLA GA+RS+P+ +L E+
Sbjct: 783 LLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLALGAYRSTPINNLLYESNT 842
Query: 62 PNLDIRRKI----LSSNYI 76
P L+++R + LS N I
Sbjct: 843 PPLEMKRDLQIAKLSQNLI 861
>gi|427779533|gb|JAA55218.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFA 148
++ L L + + ++K DGS G A+ P K +F + + AEL A
Sbjct: 177 LKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAVIFPAKAESIQFRTSHKTTSTAAELAA 236
Query: 149 LLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPL------VKRVQEELSSTESPVE 202
L +L I + K I TDS LQ + P ++++ +L+ +
Sbjct: 237 LRSALRRIDREVPLKWSIFTDSKPALQCLRTALRRGPQDQLLLEIRQLYHQLTDKGHDIT 296
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDVI 231
F W P H GI GNE AD+ AK A N V+
Sbjct: 297 FQWLPGHCGITGNEHADDAAKNAHENGVM 325
>gi|427781803|gb|JAA56353.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 6/149 (4%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFA 148
++ L L + + ++K DGS G A+ P K +F + + AEL A
Sbjct: 150 LKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAVIFPAKAESIQFRTSHKTTSTAAELAA 209
Query: 149 LLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPL------VKRVQEELSSTESPVE 202
L +L I + K I TDS LQ + P ++++ +L+ +
Sbjct: 210 LRSALRRIDREVPLKWSIFTDSKPALQCLRTALRRGPQDQLLLEIRQLYHQLTDKGHDIT 269
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDVI 231
F W P H GI GNE AD+ AK A N V+
Sbjct: 270 FQWLPGHCGITGNEHADDAAKNAHENGVM 298
>gi|321452689|gb|EFX64018.1| hypothetical protein DAPPUDRAFT_334682 [Daphnia pulex]
Length = 197
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 103 SNMKPTIDGSKN--EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ ++ CA+ IP + + L K +SIF AE+ A+ Q+L +
Sbjct: 21 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYVMD 80
Query: 161 TC--KALIITDSLSCLQAIM-NMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A I +DS S + AI N EN + +E L S+ + W PSH GI G
Sbjct: 81 DCPPEAFIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEG 140
Query: 215 NETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKY 248
NE D A N + +HN L E+ II+ +
Sbjct: 141 NERTDRLAATECNTRDGEEVHNSLSPKEMVSIIRANW 177
>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
Length = 466
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 134/321 (41%), Gaps = 55/321 (17%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNS--LQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
++Y++ + +DY V+++ + L++L VQ L AF+++ +LE E
Sbjct: 3 QLYQACVTLIVDYASTVWHNPLKDKIHLRMLGTVQRTTLICILSAFKTASTAALEVEAYV 62
Query: 62 PNLDIRRKILSSNYIAKTLSI--ENHPNIMRTLNPLYVR-----KYENSNMKPTID---- 110
++R K + +A LS E+HP +T+NP + +++P D
Sbjct: 63 LPTNLRLK-QRAQIVAARLSTLPEDHPG--QTINPTPPPPWQTPAFVEIDIEPDRDKAKD 119
Query: 111 ------------------GSKNEQGVGCALTIPEKDIVKR----FGLNKNASIFHAELFA 148
G +N G +I++ G + S++ AEL A
Sbjct: 120 KASARQKASGITVFFNASGQQNALGAAAVALDQNHNIIQHQKVCIGSIEYWSVYTAELMA 179
Query: 149 LLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN-----PLVKRVQEE 193
+ ++ + ++ A I++DS+S LQAI N +++ V++ +E
Sbjct: 180 IYYAISLVLKIAMENQVILVGQQEPATILSDSMSALQAISNTRNKSGQRIIQAVQQAAQE 239
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEW 252
L + P+ W P H GNE A+ AK+A++ D H + K I+ + E+W
Sbjct: 240 LKARGIPLCLQWMPGHCDNPGNEAANRLAKEAVSLDKEHPFQHLLSREKGFIRNRIQEDW 299
Query: 253 NTKWVNISPNENKLRKIKNSI 273
W S N LR+I +
Sbjct: 300 EQGW-RTSKNGGHLRRIDRDL 319
>gi|427783061|gb|JAA56982.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A+ +P + + F + S AEL AL +L + + + I TD
Sbjct: 176 DGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQPQRWSIFTD 235
Query: 170 SLSCLQAIMNMFHENPLVKRVQE--ELSSTES----PVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P + V E L T S V F W PSH G+ GNE AD A+
Sbjct: 236 SKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAAR 295
Query: 224 QAINND 229
A+ D
Sbjct: 296 SALQGD 301
>gi|427783063|gb|JAA56983.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A+ +P + + F + S AEL AL +L + + + I TD
Sbjct: 176 DGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQPQRWSIFTD 235
Query: 170 SLSCLQAIMNMFHENPLVKRVQE--ELSSTES----PVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P + V E L T S V F W PSH G+ GNE AD A+
Sbjct: 236 SKAALQSLLSALRHGPYEQLVFEIGHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAAR 295
Query: 224 QAINND 229
A+ D
Sbjct: 296 SALQGD 301
>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
Length = 809
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 36/262 (13%)
Query: 20 VYNSASSNSLQILNPVQNLCLRLATGAF-------RSSPVVS---LEAETGEPNLD--IR 67
Y + S NS +L V L +R+ A S VV +E NLD R
Sbjct: 440 AYRTVSLNSTLLLAGVLPLDIRVREAAMLYETKRGHSQAVVGDRGMERPVAFANLDHPAR 499
Query: 68 RKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEK 127
RK + +E+H +R ++ DGSK E VG AL+I E
Sbjct: 500 RKRWEYRSLTDGAELESH---IRECPSIFT------------DGSKIEGRVGAALSIWEG 544
Query: 128 D---IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHEN 184
K+ L +++ AEL ALL++ + G I D+ S L I + +
Sbjct: 545 TGEIKTKKLKLGSYCTVYQAELLALLKATEEVLSGGAATYNIFCDARSTLDVIASGESLH 604
Query: 185 PLVKRVQEELSS-TE--SPVEFLWCPSHVGIAGNETADEEAKQA---INNDVIHNELFFD 238
PL ++ + L + TE + W +H+G+ GNE AD AK+A + ++
Sbjct: 605 PLAFKITKNLKTITERNQEIRLFWIKAHIGLEGNERADVLAKEAALSLKCKPHYDRCPVS 664
Query: 239 EVKIIIKKKYTEEWNTKWVNIS 260
K I++ +EW+ ++ S
Sbjct: 665 FAKRTIRQGSVDEWDLRYTTES 686
>gi|427793319|gb|JAA62111.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 333
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK + A+ +P + + F + S AEL AL +L + + + I TD
Sbjct: 53 DGSKTIRSSSGAVVVPARGVTVSFKTDHPISSTAAELAALRTALCVLNREQPQRWSIFTD 112
Query: 170 SLSCLQAIMNMFHENPLVKRVQE--ELSSTES----PVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P + V E L T S V F W PSH G+ GNE AD A+
Sbjct: 113 SKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAAR 172
Query: 224 QAI 226
A+
Sbjct: 173 SAL 175
>gi|307173557|gb|EFN64451.1| hypothetical protein EAG_11587 [Camponotus floridanus]
Length = 150
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 1 MLIRIYKSLIRSKLDYGC---PVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+L+ IYKSLIR ++YGC PVY+S+ N L+ +Q +++ G S+P + A
Sbjct: 65 LLLGIYKSLIRGSIEYGCQFLPVYHSSKINKLE---KIQRKAIKICLGLRSSTPSNVVLA 121
Query: 58 ETGEPNLDIRRKILSSNYIAKTLSIENHP 86
E+G P L +R +LS YI ++L+ N+P
Sbjct: 122 ESGIPPLKLRCNLLSERYILRSLASTNNP 150
>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
Length = 1162
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 34/259 (13%)
Query: 18 CPVYNSASSNSLQILNPVQNLCLRLATGA--FRSSPVVSLEAETGEPNLDIRRKILSSNY 75
C Y + S NS ++ + L LR+ A F + V ++ G+ ++ + + +
Sbjct: 802 CRAYRTVSLNSALLMAGILPLDLRVREAASLFEAKKGVC-QSWLGDREIERMSSAMDAPH 860
Query: 76 IAKTLSIENHPNIM-----RTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIV 130
A+ S+E N++ LN L VR + DGSK E VG AL+I + ++
Sbjct: 861 PAEQQSLE-FGNLVDEEQYNNLNHLDVRIF--------TDGSKIEGRVGAALSIWDGEVE 911
Query: 131 KR---FGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPL- 186
R L +++ AEL AL ++ + + +DS + L ++N +PL
Sbjct: 912 IRSLKLALAPYCTVYQAELLALSYAVKEAQLRNGSTFGVFSDSKAALLTVINHGSLHPLA 971
Query: 187 --VKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI-------NNDVIHNELFF 237
++++ ++ + V W +H G+ GNE AD+ AK+A N D+
Sbjct: 972 VDIRKMLKQCALQNKTVALYWIKAHAGLEGNERADQLAKEAALLSKKSPNYDLCP----V 1027
Query: 238 DEVKIIIKKKYTEEWNTKW 256
VK II+ +EWN ++
Sbjct: 1028 SYVKRIIRSGSLDEWNRRY 1046
>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
Length = 1288
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN--PLV 187
S++ AEL A+ ++ + QL A I++DS+S LQ I N ++++ ++
Sbjct: 1001 SVYAAELMAIYYAIGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 1060
Query: 188 KRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + + EL + P+ W P H G GNE AD AK + + H K
Sbjct: 1061 QAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSREKRY 1120
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I++ ++EW+ +W S N LR+I + LP++
Sbjct: 1121 IRRNISDEWHQEW-RASRNGGHLRRIDRA-LPAN 1152
>gi|156540059|ref|XP_001599613.1| PREDICTED: hypothetical protein LOC100114674, partial [Nasonia
vitripennis]
Length = 721
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 102 NSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGT 161
+ NM DGS+ E G G F L + A++F E+ A+L +LG
Sbjct: 186 HCNMGNGQDGSRAETGTGSGYYSQRDGWGTFFSLGRYATVFQTEINAILTCAQRNIELGA 245
Query: 162 CKALII--TDSLSCLQAIMNMFHENPLV---KRVQEELSSTESPVEFLWCPSHVGIAGNE 216
+I +DS + L+A+M + LV K V +L++ + V L P H GI GNE
Sbjct: 246 RDRIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLCVPGHTGIRGNE 305
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD A + I E + + K+T+EW
Sbjct: 306 IADRLAALGAKHPSIGPEPYTGAARC----KHTKEW 337
>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1671
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 97 VRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLN------KNASIFHAELFALL 150
+ EN D +K +G A I + R+G+ K+ ++ AEL A+
Sbjct: 1365 TKAMENPTKAVFTDAAKENSALGAAALIMDNSYRIRYGIQVGVGREKHGNVTTAELLAIY 1424
Query: 151 QSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE--NPLVKRV---QEELSSTESPVEFLW 205
L ++ T I++DS + L+AI N + +V+ + ++L S + W
Sbjct: 1425 HGLY-LRHTYT----ILSDSRAALRAIANSSKQVGGQIVQNILHTTKQLKSIGVDLCLQW 1479
Query: 206 CPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P H GI GNE AD+ AKQ+IN + H ++ + T+EW +W + + +
Sbjct: 1480 VPGHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTH 1539
Query: 265 KLRKIKNSILPS 276
LRKI ++ LP
Sbjct: 1540 -LRKI-DAALPG 1549
>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1618
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN--PLV 187
S++ AEL A+ ++ + QL A I++DS+S LQ I N ++++ ++
Sbjct: 1331 SVYAAELMAIYYAIGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 1390
Query: 188 KRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + + EL + P+ W P H G GNE AD AK + + H K
Sbjct: 1391 QAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSREKRY 1450
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
I++ ++EW+ +W S N LR+I + LP++
Sbjct: 1451 IRRNISDEWHQEW-RASRNGGHLRRIDRA-LPAN 1482
>gi|307206121|gb|EFN84201.1| hypothetical protein EAI_09989 [Harpegnathos saltator]
Length = 101
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 131 KRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF---HENP-- 185
KRF L+ IF AE+ ALL +L + KA+I TDS S + +I+ + + +P
Sbjct: 1 KRFSLSSLIFIFGAEITALLHALRISDERNLNKAIIATDSRSAVSSILKVSDAKYTHPWI 60
Query: 186 -LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
L+K + +L + V+ LW PSH I GNE D K+A
Sbjct: 61 ILIKDILYQLHRRGTIVKLLWIPSHCDIVGNERTDALTKKA 101
>gi|326483666|gb|EGE07676.1| hypothetical protein TEQG_08765 [Trichophyton equinum CBS 127.97]
Length = 405
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 26/170 (15%)
Query: 110 DGSKNEQG-VGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT-IKQLGTCKALI- 166
DGSK + G +G + + +GL + +F AELFA+ Q+ + +K + +LI
Sbjct: 99 DGSKLDSGYLGAGIYNFRTSSYRSWGLGTDLEVFDAELFAIEQAFIKGLKAIKKSSSLIN 158
Query: 167 -------------ITDSLSCLQAIMNMFHEN-----PLVKRVQEELSSTESPVEFLWCPS 208
DS + +Q + + E ++R+ +EL + ++ +W P+
Sbjct: 159 PLFIYSSKKEFWVFIDSQAAIQRLQKSYLEGGEMYVSRIRRIAKELKDRDYQIKIVWVPA 218
Query: 209 HVGIAGNETADEEAKQAI----NNDVIHNELF-FDEVKIIIKKKYTEEWN 253
H I GNE AD AK + D++ N+ +K IK+ EEWN
Sbjct: 219 HQNILGNEKADFAAKLGARSRDSRDILKNKYTSLATIKRRIKEIALEEWN 268
>gi|242797147|ref|XP_002482953.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719541|gb|EED18961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1538
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 39/262 (14%)
Query: 2 LIRIYKSLIRSKLDYGCPVY-------NSASSNSLQILNPVQNLCLRLATGAFRSSPVVS 54
L ++Y++ I ++ Y ++ ++ ++ L +Q R+ GAF++ +
Sbjct: 1112 LRQVYQATILPQITYAASIWYAPLNSEDNHREKAVGKLEAIQKKAARIIIGAFKTVSGAA 1171
Query: 55 LEAE-------------TGEPNLDIRR----KILSSNYIAKTLS--IENHPNIMRTLNPL 95
L+ E T E L IR K L ++ ++ N+ PL
Sbjct: 1172 LDIEAFLLPIRIHLNKITAETYLRIRSTPSYKTLEQSWREGIWDGYLKGWHNLPSRWGPL 1231
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
K+ I+G V L++ + V G A++F AEL + +L
Sbjct: 1232 ERHKHR------AINGKVGVSAVQYGLSVTRQTFV---GRTPEANVFLAELVGIHMALEM 1282
Query: 156 IKQLGTCKALIITDSLSCLQAIMNMFHENPLV----KRVQEELSSTESPVEFLWCPSHVG 211
++Q K +I DS + +QAI + +EL S V W P+H G
Sbjct: 1283 VQQRIVRKMIIFYDSQAAIQAIDGAQKTGQQILGSIAEKWDELRSQGVQVTIHWIPAHQG 1342
Query: 212 IAGNETADEEAKQAINNDVIHN 233
I GNE AD AK+A ++ N
Sbjct: 1343 IEGNERADIAAKEATGWRLVRN 1364
>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1393
Score = 57.0 bits (136), Expect = 9e-06, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 102 NSNMKPTIDGSKNEQGVGCALTIPE--KDIVKR----FGLNKNASIFHAELFALLQSLLT 155
+SNM D S +G A I + KD+V+ G N S++ AEL + ++
Sbjct: 1072 SSNMVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISL 1131
Query: 156 IKQLGTCK-----------ALIITDSLSCLQAIMN--------MFHENPLVKRVQEELSS 196
+ ++ + + A I+ DS+S LQAI N + H N + EL +
Sbjct: 1132 VLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHAN---LQAAAELKA 1188
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTK 255
P+ W P H GN+ AD+ A+ A+ D +H + + I+K+ +EW +
Sbjct: 1189 RGIPLRLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRLVSQERASIRKQILKEWEHE 1248
Query: 256 W 256
W
Sbjct: 1249 W 1249
>gi|425780653|gb|EKV18659.1| hypothetical protein PDIG_09730 [Penicillium digitatum PHI26]
Length = 501
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 82 IENHPNIMRTLNPLYVRKYENSNMKPTI---DGSKNEQGVGCALTIPEKDIV--KRF-GL 135
IEN ++T N LY + + ++ DGS +G ++ ++ + +R+ G
Sbjct: 140 IENQEAALKTHNALYEDTLCDQQDRASMLFTDGSGFAGHIGASMVSLQQGVSSQRRYLGT 199
Query: 136 NKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN-----------MFHEN 184
+ ++++ AEL + +L K+ + +I +DS + +QA+ N +++
Sbjct: 200 DSQSTVYAAELSGIEMALAKAKKEQAREVIIFSDSQAAIQAVQNPKRPSGQYILTRIYDH 259
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R + ++ + V W P+HVG++GNE AD EAK A
Sbjct: 260 LRAIRSRNQVQQEPTIVTIRWIPAHVGVSGNEYADTEAKGA 300
>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1838
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G A+++ AEL +L L I +A I
Sbjct: 1532 DGSGIHGKVGAAALAPPIHTQELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF 1591
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L S VEF W P+H GI GNE AD+ A
Sbjct: 1592 TDNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLA 1651
Query: 223 KQA 225
K+A
Sbjct: 1652 KEA 1654
>gi|427784665|gb|JAA57784.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS N A+ +P DI + + + AEL AL ++ I + + I D
Sbjct: 171 DGSTNSNSSTGAVVVPSGDISMQLKFSHITTSTAAELGALQAAVKYILRQPPNQWAIFCD 230
Query: 170 SLSCLQ----AIMNMFHENPLVKRVQEELSST---ESPVEFLWCPSHVGIAGNETADEEA 222
S S LQ A+ + HE LV ++ + V F W PSH GIAGN+ ADE A
Sbjct: 231 SRSALQTLQFALRHGLHEQ-LVYEIRHDYHQALENGHDVTFQWLPSHCGIAGNDRADEAA 289
Query: 223 KQAINNDV 230
+ A D+
Sbjct: 290 RSAHEKDL 297
>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1292
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 102 NSNMKPTIDGSKNEQGVGCALTIPE--KDIVKR----FGLNKNASIFHAELFALLQSLLT 155
+SNM D S +G A I + KD+V+ G N S++ AEL + ++
Sbjct: 971 SSNMVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISL 1030
Query: 156 IKQLGTCK-----------ALIITDSLSCLQAIMN--------MFHENPLVKRVQEELSS 196
+ ++ + + A I+ DS+S LQAI N + H N + EL +
Sbjct: 1031 VLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHAN---LQAAAELKA 1087
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTK 255
P+ W P H GN+ AD+ A+ A+ D +H + + I+K+ +EW +
Sbjct: 1088 RGIPLRLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRLVSQERASIRKQILKEWEHE 1147
Query: 256 W 256
W
Sbjct: 1148 W 1148
>gi|358376676|dbj|GAA93209.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 378
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHENP--LV 187
S++ AEL A+ ++ QL A I++DS+S LQ I N ++++ ++
Sbjct: 91 SVYTAELMAIYYAIRLGFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 150
Query: 188 KRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + + EL + P++ W P H G GNE AD AK + H K
Sbjct: 151 QAIHQSAGELRARGIPLQLQWVPGHCGNPGNEAADRLAKATVGVKKRHPFRHLLSREKRY 210
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
I+K ++EW+ +W S N LR I ++
Sbjct: 211 IRKNISDEWHQEW-RASRNGGHLRCIDRAL 239
>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1758
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I G +A I
Sbjct: 1450 DGSDIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASGRRRAAIF 1509
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L S VEF W P+H GI GNE AD+ A
Sbjct: 1510 TDNQAALKALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPAHQGIEGNELADKLA 1569
Query: 223 KQA 225
K+A
Sbjct: 1570 KEA 1572
>gi|2735953|gb|AAB94030.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 743
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 9/156 (5%)
Query: 110 DGSKNEQGVGCALTI---PEKDIVKRFGLNKNASIFHAELFALLQSL--LTIKQLGTCKA 164
DGSK+E G G A + E + + + + + + AE+ A+ ++L L +G
Sbjct: 492 DGSKSESGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKALQWLLADGVGIKSC 551
Query: 165 LIITDSLSCLQAIMNMFHENPLVKRVQ---EELSSTESPVEFLWCPSHVGIAGNETADEE 221
+ITDS S LQA+ N + LV R + +L V F W H GN+ AD
Sbjct: 552 AVITDSQSSLQALANPSCDWLLVMRAKAAYRQLLRNGVAVRFFWTKGHATCEGNKIADSA 611
Query: 222 AKQAINNDV-IHNELFFDEVKIIIKKKYTEEWNTKW 256
A++A + + I L K + K W +W
Sbjct: 612 AREASASGLSIEVPLPHSYFKSVTAKMAYRLWEQRW 647
>gi|443691945|gb|ELT93673.1| hypothetical protein CAPTEDRAFT_224783 [Capitella teleta]
Length = 354
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRV---QEELS 195
SI+ AEL A+ Q+L+ I+ + I + SLS L A+ N +P + + Q L
Sbjct: 2 SIYTAELIAIEQALIFIETMKDEDQFNICSYSLSSLTALSNCDITHPYLLSILSKQNNLV 61
Query: 196 STESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWN 253
V F+WCPSH+GI GNE AD AKQA+ V L + K I+ W
Sbjct: 62 RKGKLVVFVWCPSHLGILGNEVADRLAKQALVMPVTKLPLPQTDYKSPIRSYVKSLWQ 119
>gi|427783065|gb|JAA56984.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 456
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A+ IP + + F + S AEL AL +L + + + I TD
Sbjct: 176 DGSTTIRSSSGAVVIPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQPQRWSIFTD 235
Query: 170 SLSCLQAIMNMFHENPLVKRVQE--ELSSTES----PVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P + V E L T S F W PSH G+ GNE AD A+
Sbjct: 236 SKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQATFQWLPSHCGVIGNEHADNAAR 295
Query: 224 QAI 226
A+
Sbjct: 296 SAL 298
>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1154
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + ++ A I++DS+S LQAI N +++
Sbjct: 883 SVYTAELMAIYYAISLVLKIALENWDTTASQQEPATILSDSMSALQAISNARNKSGQRII 942
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
V++ EL + P+ W P H GNE AD AK+A+ D H + K
Sbjct: 943 QAVRQSARELKARGIPLRLQWVPGHYSDLGNEAADRLAKEAVGLDKEHPFQHLLSREKGF 1002
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
I+ + EEW W S N L +I ++
Sbjct: 1003 IRNRIQEEWERGW-KTSKNGGHLWRIDRNL 1031
>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 40/243 (16%)
Query: 29 LQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYIAKTLSI--ENHP 86
L+ L VQ L AF++ +LE E+ +R K S+ +A LS ++HP
Sbjct: 21 LRTLGTVQRTALIRILSAFKTVSTAALEVESCILPTHLRLK-QSAQIVAARLSTLPDDHP 79
Query: 87 NIMRTLNPLYVR----------KYENSNMKPTI------DGSKNEQGVGCALTIPEKD-- 128
+ P ++ K++ S ++ T D S +G A +++
Sbjct: 80 GCVVVRTPAFLEIDIEPDHDKAKHKASALQDTAGIAVFSDASGQHNHLGAAAVALDRNNN 139
Query: 129 -IVKR---FGLNKNASIFHAELFAL-------LQSLLTIKQLGTCK---ALIITDSLSCL 174
I +R G + S++ A+L A+ L+ + +Q T + A I++DS+S L
Sbjct: 140 VIQQRKVSIGSMEYWSVYAAKLMAIYYAISLVLKIAMETRQAMTDRQEPATILSDSMSVL 199
Query: 175 QAIMNMFHE--NPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229
QA+ N ++ +++ VQ+ EL + P+ W P H G GNE AD AK+A+ +
Sbjct: 200 QALSNARNKLGQRIIQAVQQSVQELQTQGIPLRLQWVPGHCGDLGNEAADRLAKEAMGPE 259
Query: 230 VIH 232
H
Sbjct: 260 KEH 262
>gi|427797513|gb|JAA64208.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1216
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGT--CKAL 165
+ D ++N Q G + + + L I+ AE A+ L +++L + KA+
Sbjct: 942 STDATQNLQKAGVGIFSHQLNWSFALRLPDFTPIYLAEFLAIT---LALRKLSSQQSKAI 998
Query: 166 IITDSLS-CLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
II+D+LS C+ + ++PL++ + + S V FLW P H GIA NETAD A
Sbjct: 999 IISDALSVCIH--LTSAKQSPLLRIFWSLVPRSLSEVRFLWVPGHAGIALNETADSLASA 1056
Query: 225 AINNDVI 231
++N V+
Sbjct: 1057 SLNFPVV 1063
>gi|321466426|gb|EFX77421.1| hypothetical protein DAPPUDRAFT_321283 [Daphnia pulex]
Length = 137
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 20/104 (19%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
+++IY++LIRSKLDYG + SAS + + L+ +Q L+ GA R + +L ETGE
Sbjct: 1 MLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGE 60
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNM 105
L +RR + S + Y+R YE S++
Sbjct: 61 MPLHLRRNLASVKH--------------------YLRCYEKSDL 84
>gi|321453153|gb|EFX64418.1| hypothetical protein DAPPUDRAFT_266424 [Daphnia pulex]
Length = 352
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQG--V 118
EP + IR LS K +S+ N+P+ R L + N++ DGS N+
Sbjct: 30 EPPIAIRYFPLS-----KQMSM-NNPSEARALFNQIKHNHFNASTIAYTDGSLNKSTGKT 83
Query: 119 GCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG--TCKALIITDSLSCLQA 176
A+ IP +I + L++N+S+F E A+ ++L + L K I +DS S +Q+
Sbjct: 84 TSAVIIPSLNIEEATTLSRNSSVFTVEAEAINRTLELVYHLDDEVAKLTIFSDSRSVVQS 143
Query: 177 IMNMFHEN-PLVKRV---QEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
I + E P++ + + L S + + W PSHVGI GN AD A + N
Sbjct: 144 IESPKKEKYPIINAILTTADNLKSAGTKINLYWIPSHVGIPGNGAADRLASEESN 198
>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 377
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLN------KNASIFHAELFALLQSLLTIKQLGTCK 163
D +K +G A I ++ ++G+ K+ ++ AEL A+ L + + + +
Sbjct: 69 DAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSE 128
Query: 164 AL----------IITDSLSCLQAIMNMFHE--NPLVKRV---QEELSSTESPVEFLWCPS 208
I++DS + L+AI N + +++ + +EL S + W P
Sbjct: 129 GTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWVPG 188
Query: 209 HVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
H GI GNE AD+ AKQ+IN + H ++ + T+EW +W + + + LR
Sbjct: 189 HSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTH-LR 247
Query: 268 KIKNSILPS 276
KI ++ LP
Sbjct: 248 KI-DAALPG 255
>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1672
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLN------KNASIFHAELFALLQSLLTIKQLGTCK 163
D +K +G A I ++ ++G+ K+ ++ AEL A+ L + + + +
Sbjct: 1364 DAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSE 1423
Query: 164 AL----------IITDSLSCLQAIMNMFHE--NPLVKRV---QEELSSTESPVEFLWCPS 208
I++DS + L+AI N + +++ + +EL S + W P
Sbjct: 1424 GTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWVPG 1483
Query: 209 HVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
H GI GNE AD+ AKQ+IN + H ++ + T+EW +W + + + LR
Sbjct: 1484 HSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTH-LR 1542
Query: 268 KIKNSILPS 276
KI ++ LP
Sbjct: 1543 KI-DAALPG 1550
>gi|427798839|gb|JAA64871.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1220
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
KY+ S M DGS A+ IP K +F + + AEL AL +L I
Sbjct: 929 KYQGS-MHVYTDGSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITD 987
Query: 159 LGTCKALIITDSLSCLQAIMN----MFHENPLVKRVQEE---LSSTESPVEFLWCPSHVG 211
K I +DS + LQ++++ HE LV + EE L + F W PSH G
Sbjct: 988 ERAQKWAIFSDSKAALQSLLSPLRRGLHEQ-LVFEITEETHRLIEKGHQITFQWLPSHCG 1046
Query: 212 IAGNETADEEAKQA 225
I GNE AD+ A+ A
Sbjct: 1047 IIGNERADQAARSA 1060
>gi|427798201|gb|JAA64552.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1128
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + ++ IP K + + AEL AL +L I K I +D
Sbjct: 939 DGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSD 998
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV + EE L+ + F W PSH GI GNE AD A+
Sbjct: 999 SKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAAR 1058
Query: 224 QAI--NNDVIHNELFFD---EVKIIIKKKYTEEWN 253
A NN+++ D +++++ +++ T +WN
Sbjct: 1059 SAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1139
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G A+++ AEL +L L I +A I
Sbjct: 830 DGSGIHGKVGAAALAPPIHTQELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF 889
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L S VEF W P+H GI GNE AD+ A
Sbjct: 890 TDNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLA 949
Query: 223 KQA 225
+A
Sbjct: 950 MEA 952
>gi|321447121|gb|EFX61012.1| hypothetical protein DAPPUDRAFT_122634 [Daphnia pulex]
Length = 277
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
+++IY++LIRSKLDYG + SAS + + L+ +Q L+ GA R + +L ETGE
Sbjct: 1 MLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGE 60
Query: 62 PNLDIRRKILSSNYIAKTLSIEN 84
L +RR + S + + +++
Sbjct: 61 MPLHLRRNLASVKHYLRCYEVKS 83
>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 331
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 92 LNPLYVRKYENSNMKPTIDGSKNEQG---VGCALTIP--EKDIVKRFGLNKNASIFHAEL 146
+NP R+ + + ++ G VG A P + G A+++ AEL
Sbjct: 1 MNPTDTRRLPHQPTNAPLQQPRDNTGRRSVGAAALAPPIHTQELAYLGKETTATVYAAEL 60
Query: 147 FALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---V 201
+L L I +A I TD+ + L+A+ N + +++R+ + L S V
Sbjct: 61 LGILMGLNLILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERVRSQGLQV 120
Query: 202 EFLWCPSHVGIAGNETADEEAKQAIN 227
EF W P+H GI GNE AD+ A +A
Sbjct: 121 EFYWIPAHQGIEGNELADKLAMEATG 146
>gi|427791847|gb|JAA61375.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 928
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 115 EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFAL-LQSLLTIKQLGTCKALIITDSLSC 173
+ A T P+ + ++ L AS AEL + L + L + +A I TDS S
Sbjct: 711 DHSAAAACTAPQLALKRQCRLVYRASSTTAELVGIHLAADLIRESPQVSRAAIFTDSRSA 770
Query: 174 LQAIMNMFHENPLVKRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQA 225
L+ + PL +RV L S V W PSHVGIAGNE AD+ AK A
Sbjct: 771 LRQLAKEDRAPPLAERVAWSLHSLREYGCDVALQWIPSHVGIAGNEAADDLAKAA 825
>gi|427782519|gb|JAA56711.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
KY+ S M DGS A+ IP K +F + + AEL AL +L I
Sbjct: 166 KYQGS-MHVYTDGSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITD 224
Query: 159 LGTCKALIITDSLSCLQAIMN----MFHENPLVKRVQEE---LSSTESPVEFLWCPSHVG 211
K I +DS + LQ++++ HE LV + EE L + F W PSH G
Sbjct: 225 ERAQKWAIFSDSKAALQSLLSPLRRGLHEQ-LVFEITEETHRLIEKGHQITFQWLPSHCG 283
Query: 212 IAGNETADEEAKQA 225
I GNE AD+ A+ A
Sbjct: 284 IIGNERADQAARSA 297
>gi|427798001|gb|JAA64452.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1259
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + ++ IP K + + AEL AL +L I K I +D
Sbjct: 978 DGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSD 1037
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV + EE L+ + F W PSH GI GNE AD A+
Sbjct: 1038 SKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAAR 1097
Query: 224 QA--INNDVIHNELFFD---EVKIIIKKKYTEEWN 253
A NN+++ D +++++ +++ T +WN
Sbjct: 1098 SAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1132
>gi|427798837|gb|JAA64870.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1174
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + ++ IP K + + AEL AL +L I K I +D
Sbjct: 939 DGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSD 998
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV + EE L+ + F W PSH GI GNE AD A+
Sbjct: 999 SKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAAR 1058
Query: 224 QA--INNDVIHNELFFD---EVKIIIKKKYTEEWN 253
A NN+++ D +++++ +++ T +WN
Sbjct: 1059 SAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|427797379|gb|JAA64141.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 544
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + G A +P + I +F + + +EL ALL ++ + Q K I D
Sbjct: 262 DGSVSGSSTG-AFVVPSRSITVKFKTSHVTTSTGSELAALLAAMKFVMQESPSKWAIFCD 320
Query: 170 SLSCLQAIMNMFHEN--PLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
S + LQ + ++ N LV ++ E ++ + F W P H GI+GN AD A+
Sbjct: 321 SKAALQCVRSLRRGNYHQLVSQINEICDRATNQGHDIVFQWLPGHCGISGNHLADNAARC 380
Query: 225 AIN 227
A N
Sbjct: 381 AHN 383
>gi|307181059|gb|EFN68825.1| Putative 115 kDa protein in type-1 retrotransposable element R1DM
[Camponotus floridanus]
Length = 135
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ IY++LIR + YGC + + +S++ L +Q LR G +++ V LEA GE
Sbjct: 53 LLTIYRALIRDSMAYGCLTFPFNNHSSMRHLESIQLQALRTCLGLRKTTTNVVLEA--GE 110
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
L R ++L+S YI K ++++HP
Sbjct: 111 GPLRFRFELLTSKYILKIFALDSHP 135
>gi|427784671|gb|JAA57787.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 434
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
KY +S T DGS A IP +RF L+ + AE+ A+ + + I
Sbjct: 142 KYASSTHVFT-DGSVLPTTSTAAFVIPSLKTSERFRLDHRTTSTAAEIVAIREVIRYIST 200
Query: 159 LGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVE------FLWCPSHVGI 212
I DS LQ I + P QE S + ++ + W P H G+
Sbjct: 201 KPPRSWTIFCDSKPALQIIYSALRRGPYYLLAQEVAESHDVALKSGHRIGYQWIPGHCGL 260
Query: 213 AGNETADEEAKQAINNDVI 231
GNE AD EAK A +N I
Sbjct: 261 HGNEQADAEAKMAHDNAAI 279
>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 832
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLN------KNASIFHAELFALLQSLLTIKQLGTCK 163
D +K +G A+ I + ++G+ K+ ++ AEL A+ L + + + +
Sbjct: 524 DAAKENSVLGAAVLIMDNSYRIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSE 583
Query: 164 AL----------IITDSLSCLQAIMNMFHE--NPLVK---RVQEELSSTESPVEFLWCPS 208
I++DS + L+AI N + +V+ R ++L S + W P
Sbjct: 584 GTPPPHQHHTYTILSDSHTALRAIANSSKQVGGQIVQNILRTTKQLKSIGIDLCLQWVPG 643
Query: 209 HVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
H GI GNE AD+ AKQ+IN + H ++ + T EW +W + + + LR
Sbjct: 644 HSGIRGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTHEWRDEWSSTAKGTH-LR 702
Query: 268 KIKNSILPS 276
KI ++ LP
Sbjct: 703 KI-DAALPG 710
>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 510
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I +A I
Sbjct: 201 DGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF 260
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L + VEF W P+H GI GNE AD A
Sbjct: 261 TDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLA 320
Query: 223 KQAIN 227
K+A
Sbjct: 321 KEATG 325
>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 765
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 24/198 (12%)
Query: 101 ENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLN------KNASIFHAELFALLQSLL 154
EN D +K +G A I ++ ++G+ K+ ++ AEL A+ L
Sbjct: 448 ENPTKAVFTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLY 507
Query: 155 TIKQLGTCKAL----------IITDSLSCLQAIMNMFHE--NPLVKRV---QEELSSTES 199
+ + + + I++DS + L+AI N + +V+ + +EL S
Sbjct: 508 LVWRSHSSEGTPTPHQRHTYTILSDSRTALRAIANSSKQVGGQIVQNILHTTKELRSIGV 567
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAIN-NDVIHNELFFDEVKIIIKKKYTEEWNTKWVN 258
+ W P H GI GNE AD+ AKQ+IN N ++ + T+EW +W +
Sbjct: 568 DLCLQWVPGHSGIKGNEMADQLAKQSINPNPTRGFPKPASHLREASRNSTTQEWRDEWSS 627
Query: 259 ISPNENKLRKIKNSILPS 276
+ + LRKI ++ LP
Sbjct: 628 TAKGTH-LRKI-DAALPG 643
>gi|1335691|emb|CAA41925.1| unnamed protein product [Drosophila miranda]
Length = 521
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 41/262 (15%)
Query: 5 IYKSLIRSKLDYGCPVYNSA--SSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+Y ++IR + YG V+ A L L+ VQ + TG R++P +L+
Sbjct: 104 LYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLL 163
Query: 63 NLDIRRKILSSNYIAKT-------LSIENHPNIMRTLNPLYVR----------------- 98
+D+ K +++ + S H I+ L L R
Sbjct: 164 PVDLMGKKVATLAALRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVS 223
Query: 99 -----KYENSNMKPT------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELF 147
+E P DGSK + VG + E +I F L + S+F AE+
Sbjct: 224 IPSREDWEMGEPGPANAVHFYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIE 283
Query: 148 ALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVE--F 203
A+ + S+++ +L T + +DS + ++A+ ++ + VK + L ++
Sbjct: 284 AIKEAISIVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIAEQLDLFL 343
Query: 204 LWCPSHVGIAGNETADEEAKQA 225
+W P H I GN+ ADE A+Q
Sbjct: 344 IWVPGHRDIEGNDAADELARQG 365
>gi|427791283|gb|JAA61093.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 858
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATG 45
LI +YKSLI ++LDYG +Y SA+ ++L++L+PV +L +RL+TG
Sbjct: 815 LISLYKSLILTRLDYGAIIYQSATPSALKMLDPVHHLGIRLSTG 858
>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]
Length = 233
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 29/165 (17%)
Query: 92 LNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQ 151
+ LYV ++ DGSK+E V C T ++ + L +ASIF AEL A+ +
Sbjct: 1 MTSLYVISLCPDHLPIYTDGSKSETRVACVAT--ANRLLIQVRLPDSASIFSAELLAIYE 58
Query: 152 SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVG 211
L ++ K I L + + LWCPSH+G
Sbjct: 59 VLTLLECAAPQKYTI---------------------------LYNRGFDLVILWCPSHIG 91
Query: 212 IAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+ GNE AD AK+A++ + + + Y ++W W
Sbjct: 92 VVGNERADLLAKEALSFTACDVRIPAFDFNSVAYSFYRDKWQALW 136
>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1045
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 110 DGSKNEQGVGCA-LTIPEKDIVKRFGLNKNASIFHAELFAL-LQSLLTIKQLGTCKALII 167
DGS G A +P ++ ++ L AS AEL L L + L +++ ++
Sbjct: 777 DGSVMPDGTAAAACVVPARNSSRQCKLPFPASSTAAELAGLHLAADLLAEEIPVQPVAVL 836
Query: 168 TDSLSCLQAIMNMFHEN---PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
+DS S LQ + N L+ + L+++ + V F W PSHVGIAGNE AD AK
Sbjct: 837 SDSKSALQTLANPRRAGLTGSLLAAKYQALAASGASVSFHWLPSHVGIAGNEEADTLAKA 896
Query: 225 A 225
A
Sbjct: 897 A 897
>gi|307194212|gb|EFN76629.1| hypothetical protein EAI_07164 [Harpegnathos saltator]
Length = 110
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQA-----IMNM 180
E +I ++ L+ S+F AE FA+L +L+ I KA+I +DSLS L I
Sbjct: 6 ELNIFLKYHLSDFNSVFEAESFAILHTLVAISDSNCKKAVIASDSLSVLTFFNSPDIKGK 65
Query: 181 FHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
+H PLV +++ L + F+W P H I GNE D AK+
Sbjct: 66 YH--PLVYMMRDIIHNLYLQNITIAFIWIPEHHNIPGNEAVDLLAKE 110
>gi|307180463|gb|EFN68485.1| hypothetical protein EAG_06052 [Camponotus floridanus]
Length = 137
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+ IYK+LIR ++YGC + + ++++ L +Q L G + +P + AE GE
Sbjct: 53 LLNIYKALIRGSMEYGCLTFPFNNHSAMRNLENIQLRALCACLGLRKITPTNIVLAEAGE 112
Query: 62 PNLDIRRKILSSNYIAKTLSIENHP 86
L R + L+S YI K ++++HP
Sbjct: 113 GPLRFRFEFLTSKYILKIFALDSHP 137
>gi|425783431|gb|EKV21281.1| hypothetical protein PDIP_08070 [Penicillium digitatum Pd1]
Length = 268
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 25/139 (17%)
Query: 110 DGSKNEQGVGCAL--TIPEKDIVKRF---GLNKNASIFHAELFALLQSLLTIK------- 157
DGS + G+G A+ T P R G + +A+++ AEL A+ +L I+
Sbjct: 68 DGSGYQGGIGAAVYPTYPSVQNESRLCNMGSDDDATVYAAELRAIEMALEVIQYQFTSND 127
Query: 158 ----QLGTCKALIITDSLSCLQAIMN-------MFHENPLVKRVQEELSSTESPVEFLWC 206
+L A+I TD+ + L+AI N ++ E L R+ + S ++ VE W
Sbjct: 128 DWRERLAERGAVIFTDNQAALKAIQNPKMPSGQVYLEGSL--RLLDWCSKSKIQVELRWI 185
Query: 207 PSHVGIAGNETADEEAKQA 225
P+H GI GNE D AK A
Sbjct: 186 PAHEGIPGNEHVDMLAKSA 204
>gi|542601|pir||S37765 hypothetical protein - fruit fly (Drosophila miranda) transposon
TRIM
Length = 426
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 41/262 (15%)
Query: 5 IYKSLIRSKLDYGCPVYNSA--SSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+Y ++IR + YG V+ A L L+ VQ + TG R++P +L+
Sbjct: 9 LYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEALDTVLDLL 68
Query: 63 NLDIRRKILSSNYIAKT-------LSIENHPNIMRTLNPLYVR----------------- 98
+D+ K +++ + S H I+ L L R
Sbjct: 69 PVDLMGKKVATLAALRMREARLWKASAVGHSGILMRLPQLPERTDYCIPSDHLSTPFQVS 128
Query: 99 -----KYENSNMKPT------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELF 147
+E P DGSK + VG + E +I F L + S+F AE+
Sbjct: 129 IPSREDWEMGEPGPANAVHFYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIE 188
Query: 148 ALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVE--F 203
A+ + S+++ +L T + +DS + ++A+ ++ + VK + L ++
Sbjct: 189 AIKEAISIVSKLRLDTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIAEQLDLFL 248
Query: 204 LWCPSHVGIAGNETADEEAKQA 225
+W P H I GN+ ADE A+Q
Sbjct: 249 IWVPGHRDIEGNDAADELARQG 270
>gi|321453396|gb|EFX64636.1| hypothetical protein DAPPUDRAFT_333996 [Daphnia pulex]
Length = 292
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 9/138 (6%)
Query: 112 SKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC--KALIITD 169
S +++ CA+ IP + + L K +SIF A++ A+ Q+L + C +A+I +D
Sbjct: 146 SSSQETTTCAIFIPVLNKEHAWTLTKGSSIFTAKVTAIYQALKLFYDMDDCPPEAIIYSD 205
Query: 170 SLSCLQAIMNM-FHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
S S + AI + EN + +E L S+ + W PSH GI GNE D A
Sbjct: 206 SSSAIIAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEGNERTDRLAATE 265
Query: 226 IN---NDVIHNELFFDEV 240
N + +HN LF E+
Sbjct: 266 CNTQDGEEVHNSLFPKEM 283
>gi|427780533|gb|JAA55718.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 380
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A IP + I + L ++ +EL AL ++ IK+ + + D
Sbjct: 171 DGSTTQTSSTGATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCD 230
Query: 170 S---LSCLQAIMNMFHENPLVKRVQEELSS-TES--PVEFLWCPSHVGIAGNETADEEAK 223
S L CL + + LV ++E L + TE V F W PSH GI+GN+ ADE A+
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAR 290
Query: 224 QA 225
+A
Sbjct: 291 EA 292
>gi|358376686|dbj|GAA93218.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 640
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES 199
S++ AEL + ++ + QL A + + Q + + EL +
Sbjct: 380 SVYAAELMTIYYAIGLVFQLAQKHA-----TTTATQGPATILSDTA-------ELKARGI 427
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVN 258
P+ W P H G GNETAD AK+ + + H + K I+ K +EW +W
Sbjct: 428 PLRLQWVPGHCGDPGNETADRLAKETVGAENKHPFQHLLSREKAFIRNKIKKEWEQEW-K 486
Query: 259 ISPNENKLRKIKNSILPSS 277
S N LR++ + LP+S
Sbjct: 487 TSKNGGHLRRV-DQALPAS 504
>gi|427779423|gb|JAA55163.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 435
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
KY+ S M DGS A+ IP K +F + + AEL AL +L I
Sbjct: 166 KYQGS-MHVYTDGSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITD 224
Query: 159 LGTCKALIITDSLSCLQAIMN----MFHENPLVKRVQEE---LSSTESPVEFLWCPSHVG 211
K I +DS + LQ++++ HE LV + EE L + F W PSH G
Sbjct: 225 ERAQKWAIFSDSKAALQSLLSPLRRGLHEQ-LVFEITEETHRLIEKGHQITFQWLPSHCG 283
Query: 212 IAGNETADEEAKQA 225
I GNE A++ A+ A
Sbjct: 284 IIGNERANQAARSA 297
>gi|391865317|gb|EIT74602.1| reverse transcriptase [Aspergillus oryzae 3.042]
Length = 428
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 110 DGSKNEQGVGC-ALTIPEKDIVKR-FGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS +G A++I + I R G + ++++ EL + +L +++ T A I
Sbjct: 143 DGSGLNGRIGASAVSIAQGWIRNRTLGSEEESTVYAGELTGIRMALHKLRKEKT-PATIF 201
Query: 168 TDSLSCLQAIMNMFHENPLVKRVQEELS------STESPVEFLWCPSHVGIAGNETADEE 221
DS + +QA+ N P + + +++ + ++ V+ W P+H+G+ GNE ADE
Sbjct: 202 VDSQAAIQAVQN--PRRPSGQYILDQIYYIIRRYNMQNRVQIRWIPAHIGVPGNEAADEA 259
Query: 222 AK---QAINNDVIHNELFFDEVKIIIKKKYTEEWNTK 255
A+ Q + +++ IK ++ EW T+
Sbjct: 260 AREGTQRTGEAICLAAAVKRQIRRSIKDRWIREWKTE 296
>gi|427779393|gb|JAA55148.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 424
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A IP + I + L ++ +EL AL ++ IK+ + + D
Sbjct: 171 DGSTTQTSSTGATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCD 230
Query: 170 S---LSCLQAIMNMFHENPLVKRVQEELSS-TES--PVEFLWCPSHVGIAGNETADEEAK 223
S L CL + + LV ++E L + TE V F W PSH GI+GN+ ADE A+
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAR 290
Query: 224 QA 225
+A
Sbjct: 291 EA 292
>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I +A I
Sbjct: 1456 DGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF 1515
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L S VEF W P+H GI GNE AD A
Sbjct: 1516 TDNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLA 1575
Query: 223 KQA 225
K+A
Sbjct: 1576 KEA 1578
>gi|427781947|gb|JAA56425.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A IP + I + L ++ +EL AL ++ IK+ + + D
Sbjct: 171 DGSTTQTSSTGATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCD 230
Query: 170 S---LSCLQAIMNMFHENPLVKRVQEELSS-TES--PVEFLWCPSHVGIAGNETADEEAK 223
S L CL + + LV ++E L + TE V F W PSH GI+GN+ ADE A+
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAR 290
Query: 224 QA 225
+A
Sbjct: 291 EA 292
>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I +A I
Sbjct: 1442 DGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF 1501
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L S VEF W P+H GI GNE AD A
Sbjct: 1502 TDNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLA 1561
Query: 223 KQA 225
K+A
Sbjct: 1562 KEA 1564
>gi|427782051|gb|JAA56477.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFA 148
++ L+ ++ + +++ DGS G A+ IP ++I R + + AEL A
Sbjct: 150 LKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAVVIPAREITLRLKTSHVTTSTAAELTA 209
Query: 149 LLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF----HENPL--VKRVQEELSSTESPVE 202
L +L I + + +DS LQ + ++ HE + R+ + V+
Sbjct: 210 LRCALEYIDSERPSRWAVFSDSKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVD 269
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDV-----IHNELFFDEVKIIIKKKYTEEWNT 254
F W P H GI+GN +AD A+ + + + +++ + + EWNT
Sbjct: 270 FQWIPGHCGISGNVSADNAARTSHEQETTVPIPLSRTDAASQLRHLARSLCLAEWNT 326
>gi|427779469|gb|JAA55186.1| Putative tick transposon [Rhipicephalus pulchellus]
gi|427782053|gb|JAA56478.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 11/177 (6%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFA 148
++ L+ ++ + +++ DGS G A+ IP ++I R + + AEL A
Sbjct: 150 LKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAVVIPAREITLRLKTSHVTTSTAAELTA 209
Query: 149 LLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF----HENPL--VKRVQEELSSTESPVE 202
L +L I + + +DS LQ + ++ HE + R+ + V+
Sbjct: 210 LRCALEYIDSERPSRWAVFSDSKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVD 269
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDV-----IHNELFFDEVKIIIKKKYTEEWNT 254
F W P H GI+GN +AD A+ + + + +++ + + EWNT
Sbjct: 270 FQWIPGHCGISGNVSADNAARTSHEQETTVPIPLSRTDAASQLRHLARSLCLAEWNT 326
>gi|358376063|dbj|GAA92634.1| hypothetical protein AKAW_10748 [Aspergillus kawachii IFO 4308]
Length = 399
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 149 LLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPS 208
+L + L KQ G + ++ +LS + I H++ EL + P+ W P
Sbjct: 143 ILPTHLRHKQRGQVASARLS-TLSDDRPIHEAIHQSA------AELKARGIPLRLQWVPG 195
Query: 209 HVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
H G GNETAD AK+A+ + H + K I+ EW +W S N LR
Sbjct: 196 HCGNPGNETADRLAKEAVGAEKKHPFQHLLSREKAFIRNTIKSEWEQEW-KTSKNGGHLR 254
Query: 268 KIKNSILPS 276
++ N LP+
Sbjct: 255 RM-NRALPA 262
>gi|443730003|gb|ELU15698.1| hypothetical protein CAPTEDRAFT_201116 [Capitella teleta]
Length = 243
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNIS 260
V F+WCPSHVGI GNE AD AKQA+ V L + K I+ W +W
Sbjct: 139 VVFIWCPSHVGILGNEVADRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDE-- 196
Query: 261 PNENKLRKIKNSI 273
+NKL I+ I
Sbjct: 197 ETDNKLHSIQPVI 209
>gi|425776684|gb|EKV14892.1| Reverse transcriptase, putative [Penicillium digitatum PHI26]
Length = 994
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 25/139 (17%)
Query: 110 DGSKNEQGVGCAL-----TIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIK------- 157
DGS + G+G A+ ++ + + G + +A+++ AEL A+ +L I+
Sbjct: 758 DGSGYQGGIGAAVYPAYPSVQNESRLCNMGSDDDATVYAAELHAIEMALEVIQYQFTSND 817
Query: 158 ----QLGTCKALIITDSLSCLQAIMN-------MFHENPLVKRVQEELSSTESPVEFLWC 206
+L A+I TD+ + L+AI N ++ E L RV + S ++ VE W
Sbjct: 818 DWRERLAERGAVIFTDNQAALKAIKNPKMPSGQVYLEGSL--RVLDWCSKSKIQVELRWI 875
Query: 207 PSHVGIAGNETADEEAKQA 225
P+H GI GNE D AK A
Sbjct: 876 PAHEGIPGNEHVDMLAKSA 894
>gi|427791527|gb|JAA61215.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1298
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A IP + I + L ++ +EL AL ++ IK+ + + D
Sbjct: 969 DGSTTQTSSTGATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCD 1028
Query: 170 S---LSCLQAIMNMFHENPLVKRVQEELSS-TES--PVEFLWCPSHVGIAGNETADEEAK 223
S L CL + + LV ++E L + TE V F W PSH GI+GN+ ADE A+
Sbjct: 1029 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAR 1088
Query: 224 QA 225
+A
Sbjct: 1089 EA 1090
>gi|427781951|gb|JAA56427.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 95 LYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLL 154
L++ + +++ DGS A+ IP + + + + S AEL AL +L
Sbjct: 156 LHLHEVYSAHTHIYTDGSVTATSSTAAVIIPASSVTIQLKMFYSTSTTAAELVALRAALQ 215
Query: 155 TIKQLGTCKALIITDSLSCLQ----AIMNMFHENPL--VKRVQEELSSTESPVEFLWCPS 208
+ + I DS + LQ A+ + HE + +++V ++ V F W PS
Sbjct: 216 FVIEQTPNSWAIFCDSKAALQSLPSALRHGSHEQLVAEIRQVHHDIIEKGHTVIFQWMPS 275
Query: 209 HVGIAGNETADEEAKQAINN 228
H GI GN+ AD A+ A N
Sbjct: 276 HCGIQGNDQADAAARSAHNG 295
>gi|425775212|gb|EKV13494.1| hypothetical protein PDIG_38760 [Penicillium digitatum PHI26]
Length = 470
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 30/141 (21%)
Query: 110 DGSKNEQGVGCAL--TIPEKDIVKRF---GLNKNASIFHAELFALLQSLLTIKQ------ 158
DGS + G+G A+ P + R G + +A+++ AEL A+ +L IK+
Sbjct: 68 DGSGYQGGIGAAVYPAYPYRRNEARLCNMGTDDDATVYAAELRAIEMALEVIKERFNDDN 127
Query: 159 -----LGTCKALIITDSLSCLQAIMNMFHENPLVKRVQE---------ELSSTESPVEFL 204
L +I TD+ + L+AI +NP + Q E + + VE
Sbjct: 128 EWRDCLAKSGVVIFTDNQATLRAI-----QNPRMPSGQVYLEGCLRLLEWCNDKIQVELR 182
Query: 205 WCPSHVGIAGNETADEEAKQA 225
W P+H GI GNE AD AK+A
Sbjct: 183 WVPAHEGIPGNEAADMYAKEA 203
>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 696
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 78/196 (39%), Gaps = 36/196 (18%)
Query: 110 DGSKNEQGVGCA-------LTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG-- 160
D S E +G A L + E V+ G S+ AEL + ++ T+ ++
Sbjct: 389 DASGREGHLGAAAVALGNDLQVIESQQVQ-VGPMDRWSVHVAELIGIFYAVSTVFKISHQ 447
Query: 161 --------TCKALIITDSLSCLQAIMNMFHENPLVKRVQE----------ELSSTESPVE 202
T A I+ DS S LQAI ENP K Q E+ + +
Sbjct: 448 RPRTEHNRTTTATILCDSKSALQAI-----ENPGNKSGQRIIHAILQAAAEVQAKGIALR 502
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISP 261
W P H GN+ AD AK A + H + +I+ K +W +W N S
Sbjct: 503 LQWIPGHCDDPGNDAADRLAKDAASPGKTHPFRPLLTRKRALIRDKIRAQWEREW-NAST 561
Query: 262 NENKLRKIKNSILPSS 277
N LRKI + LP+S
Sbjct: 562 NGGHLRKIDRT-LPAS 576
>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
Length = 701
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKK 246
K+ EL + P+ W P H G GNE AD AK+A+ D H + K I+
Sbjct: 231 KQSARELKARGIPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSREKGFIRN 290
Query: 247 KYTEEWNTKWVNISPNENKLRKIKNSI 273
+ EEW W S N LR+I ++
Sbjct: 291 RIQEEWERGW-KTSKNGGHLRRIDRNL 316
>gi|353243286|emb|CCA74846.1| hypothetical protein PIIN_08815 [Piriformospora indica DSM 11827]
Length = 171
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 109 IDGSKNEQGVGCALTIPE-----KDIVKRFGLNKNASIFHAELFALLQSLLTIKQL-GTC 162
+DGS E +G A + + K + G ++ EL ++ + + + G C
Sbjct: 1 MDGSGMEGKIGAAAVLYQNGQRVKAVCYLLGAETEHTVHKGELVGIVLGIHLARTMQGNC 60
Query: 163 KALIITDSLSCLQAIMNMFHENP---------LVKRVQEELSSTES-PVEFLWCPSHVGI 212
+ I SL+ AI ++ H P ++ +++ELS +EF W P H GI
Sbjct: 61 TKVNI--SLNNQVAIQSIAHARPNTGQHVMENILSEIEDELSDHRRLQIEFTWVPGHKGI 118
Query: 213 AGNETADEEAKQAI 226
GN+ AD+EAK+AI
Sbjct: 119 QGNKVADKEAKKAI 132
>gi|443708866|gb|ELU03797.1| hypothetical protein CAPTEDRAFT_187709 [Capitella teleta]
Length = 213
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 90 RTLNPLYVRKYENSNMKPT--------IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASI 141
+T NP Y K E N+ DGSK++ V C+ T I R L +ASI
Sbjct: 95 KTTNPNYTLKNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATADNLRIQIR--LPDSASI 152
Query: 142 FHAELFALLQ--SLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES 199
F AEL A+ Q +LL + LI TDSLS LQAI N ++P V ++ E+ +S
Sbjct: 153 FSAELLAIYQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILTEVYICDS 212
>gi|427780715|gb|JAA55809.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 124 IPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE 183
IPEK + +F + S AEL A+ +L + + I +DS + LQ IM+ F
Sbjct: 211 IPEKSVTIKFKTSHLTSSTAAELTAIRAALEFVVKEPPQAWSIFSDSKAALQCIMSPFRR 270
Query: 184 NP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
P ++ + + + + W P H GI GN+ ADE A+ A +D +H
Sbjct: 271 GPNEQLVADIRILHHRAVEKQHNIVYQWIPGHCGIYGNDRADEAARSA--HDALH 323
>gi|321452687|gb|EFX64016.1| hypothetical protein DAPPUDRAFT_118610 [Daphnia pulex]
Length = 269
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 14 LDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSS 73
+DYG Y SAS SL+ ++ V LR GA RS+PV L +ETG +L R K+L+
Sbjct: 1 MDYGAIAYGSASKTSLERVDVVGRAILRNIMGANRSTPVEMLYSETGTESLSWRTKLLTR 60
Query: 74 NYIAKTLSIENHPN 87
Y+ L++ + PN
Sbjct: 61 KYL---LNLSHKPN 71
>gi|383860150|ref|XP_003705554.1| PREDICTED: leucine-rich repeat-containing protein 15-like
[Megachile rotundata]
Length = 635
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGSK G G A I ++ + IF EL A+ ++ + I D
Sbjct: 48 DGSKTRIGSGYA--IVRNQSTEKVKFHHKTPIFLCELQAITHAIKSTLTDQNTNFAIFCD 105
Query: 170 SLSCLQAIMNMFHENPLVKRVQEEL---SSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
S S + AI ++ + +++ QE S + + +W SH+ I GN+ AD AK+A
Sbjct: 106 STSAISAIQKLWTSDFVIQECQEAYTRSSQKNNSITIMWILSHIDITGNDKADRAAKEAA 165
Query: 227 N 227
N
Sbjct: 166 N 166
>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I +A I
Sbjct: 1456 DGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF 1515
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L + VEF W P+H GI GNE AD A
Sbjct: 1516 TDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLA 1575
Query: 223 KQA 225
K+A
Sbjct: 1576 KEA 1578
>gi|427779397|gb|JAA55150.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 425
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
KY+ S M DGS A+ IP K +F + + AEL AL +L I
Sbjct: 166 KYQGS-MHVYTDGSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITD 224
Query: 159 LGTCKALIITDSLSCLQAIMN----MFHENPLVKRVQEE---LSSTESPVEFLWCPSHVG 211
K I +DS + LQ++++ HE LV + EE L + F W SH G
Sbjct: 225 ERAQKWAIFSDSKAALQSLLSPLRRGLHEQ-LVFEITEETHRLIEKGHQITFQWLTSHCG 283
Query: 212 IAGNETADEEAKQA 225
I GNE AD+ A+ A
Sbjct: 284 IIGNERADQAARSA 297
>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1776
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 110 DGSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS VG A P + G + +++ AEL + L I +A I
Sbjct: 1467 DGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF 1526
Query: 168 TDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEA 222
TD+ + L+A+ N + +++R+ + L + VEF W P+H GI GNE AD A
Sbjct: 1527 TDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLA 1586
Query: 223 KQA 225
K+A
Sbjct: 1587 KEA 1589
>gi|427778517|gb|JAA54710.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 468
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI-KQLGTCKALIIT 168
DGS G A+ IP + I RF + + AEL AL +L I + K + +
Sbjct: 183 DGSTTSCSSGGAVVIPSQGITLRFKTSHATTSTAAELAALRSALEFINSEERPSKWAVFS 242
Query: 169 DS---LSCLQAIMNMFHENPLVK---RVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
DS L CL +++ + L ++ + ++F W P H GI+GN++AD A
Sbjct: 243 DSKPALQCLGSVLRRGCHDQLTYETVKLHHHVIQKGHDIDFQWLPGHCGISGNDSADNAA 302
Query: 223 K 223
+
Sbjct: 303 R 303
>gi|427783069|gb|JAA56986.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS Q A+ +P K I F + + AEL AL +L + + + +D
Sbjct: 197 DGSTTLQRSSGAVVVPAKAITVSFKTDHPTTSTAAELAALRAALRVVNHEQPQRWSVFSD 256
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEELSST---ESPVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV V+ L ++ V+F W PSH G+ GNE AD A+
Sbjct: 257 SKAALQSLLSALRHGPYEQLVFEVRYLLHTSIEKGHHVKFQWLPSHCGVIGNEHADNAAR 316
Query: 224 QAINNDVIHNELF-----FDEVKIIIKKKYTEEWNT 254
A+ D + +++++ +K WNT
Sbjct: 317 SALQGDTLETIPLSRTDAARQLRVVAQKITFSTWNT 352
>gi|427778015|gb|JAA54459.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS N Q A+ +P + I F + + AEL L + + K I +D
Sbjct: 197 DGSTNLQFSSGAVVVPARAITTSFRTDHPTTSTAAEL--AXXXLCLVNREPPQKWSIFSD 254
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV ++ + ++ V F W PSH G+ GNE AD A+
Sbjct: 255 SKAALQSVLSALRRGPYEQLVFEIRYLIHTSHEKGHHVTFQWLPSHCGVIGNEHADNAAR 314
Query: 224 QAINN 228
A+
Sbjct: 315 AALEG 319
>gi|312376130|gb|EFR23313.1| hypothetical protein AND_13122 [Anopheles darlingi]
Length = 361
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 20/191 (10%)
Query: 79 TLSIEN-HPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEK--DIVKRFGL 135
TLS N P +R L + + D SK+ G C + + ++ D+ L
Sbjct: 147 TLSRANLQPETLRRLTEYALESEYCGWVHIYTDASKSPDG-QCGIGVYDETNDVRIALQL 205
Query: 136 NKNASIFHAELFALLQSLLTIKQLGTCKALIITDS-LSCLQAIMNMFHENPLVKRVQEEL 194
+ SI AE A+ ++ I G +A+++TDS +C+ + E+ + V +E+
Sbjct: 206 ALDTSIMTAETLAIKVAMQHIADRGIRRAVLLTDSQAACM--FLRRNRESRVRNAVADEI 263
Query: 195 --SSTESPVEFLWCPSHVGIAGNETADEEAKQA---------INNDV-IHNEL-FFDEVK 241
+ V W P HV ++GN ADE A+ A +NND+ IH+ + +F+E +
Sbjct: 264 LRMARTFQVTIQWIPGHVEVSGNRIADELARTALSEGGADAVLNNDIFIHDAIRYFEERR 323
Query: 242 IIIKKKYTEEW 252
+ K+ +E+
Sbjct: 324 SALINKWYQEY 334
>gi|358376801|dbj|GAA93312.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 316
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 140 SIFHAELFALLQSLLTIKQ----LGTCKALIITDSLSCLQAIMNMFHENP-----LVKRV 190
+IF+A +L+ + T +Q G A I++DS+S LQAI N +++ + +
Sbjct: 70 AIFYA--ISLVLQVTTKRQGRLDRGKQPATILSDSMSALQAIRNPANKSGQRIIRAILQA 127
Query: 191 QEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYT 249
E+ + P+ W P H GN+ D AK+A+ +H + I+K+
Sbjct: 128 ASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKEAVGPRKMHPFKPLLSRENGFIRKRVL 187
Query: 250 EEWNTKWVNISPNENKLRKI 269
EW +W S LR+I
Sbjct: 188 NEWKEEWAK-STKGGHLRQI 206
>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]
Length = 574
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
WCPSHVG+ GNE AD AK+A++ + + K I + + E+W +W S EN
Sbjct: 3 WCPSHVGVMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWS--SEQEN 60
Query: 265 KLRKIKNSI 273
KL I+ ++
Sbjct: 61 KLYSIQPTL 69
>gi|427781953|gb|JAA56428.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 95 LYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLL 154
L++ + +++ DGS A+ IP + + + + S AEL AL +L
Sbjct: 156 LHLHEVYSAHTHIYTDGSVTATSSTAAVIIPASSVTIQLKMFYSTSTTAAELVALRAALQ 215
Query: 155 TIKQLGTCKALIITDSLSCLQ----AIMNMFHENPL--VKRVQEELSSTESPVEFLWCPS 208
+ + I DS + LQ A+ + HE + +++V ++ V F W PS
Sbjct: 216 FVIEQTPNSWAIFCDSKAALQSLPSALRHGSHEQLVAEIRQVHHDIIEKGHQVIFQWMPS 275
Query: 209 HVGIAGNETADEEAKQA 225
H GI GN+ AD A+ A
Sbjct: 276 HCGIQGNDQADAAARSA 292
>gi|322798539|gb|EFZ20172.1| hypothetical protein SINV_10041 [Solenopsis invicta]
Length = 302
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 24/149 (16%)
Query: 118 VGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAI 177
VGCA+ +P K I F LNK S F AE+ + +++ L + L +
Sbjct: 18 VGCAVFVPSKKIGLLFKLNKLTSSFTAEVITIAKAV----------ELALESGLKSINVC 67
Query: 178 MNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDV-IHNELF 236
++ H + F WCP+H + GNE D+ K + + N++F
Sbjct: 68 TDLEHFKSF-------------GILFTWCPAHSRLKGNEDDDKLDKMGSESSTWVLNKVF 114
Query: 237 FDEVKIIIKKKYTEEWNTKWVNISPNENK 265
F+E +K KY + +I PN K
Sbjct: 115 FNECVDCLKGKYKNIDSCHLSSIIPNTGK 143
>gi|342869519|gb|EGU73183.1| hypothetical protein FOXB_16307 [Fusarium oxysporum Fo5176]
Length = 609
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGC-ALTIPEKDIVKRFGLNK--NASIFHAE 145
+++L+PL + Y DGS +E+GV TI + D+ G ++ A +F AE
Sbjct: 385 VKSLDPLTLVVYS--------DGSLSEKGVASYGFTIHQDDLPIFDGSDRLGPAEVFDAE 436
Query: 146 LFALLQSL---LTIKQLGTCKALIITDSLS---CLQAIMNMFHENPLVKRVQEELSSTES 199
L+ L L +++ T I D+L+ CLQ + ++ ++ + L ++
Sbjct: 437 ATGALEGLKAALNLRESATQNIFICLDNLAAATCLQGTPSDSSQHIFLEF--QALVTSHG 494
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAIN---NDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
V+ W P H I GNE AD+ AK A + + + L + ++ I ++K + + W
Sbjct: 495 AVQVRWVPGHTDIPGNEQADKLAKAASSLPEPEGARSTLAY--LRRIARQKPKDTFKAWW 552
Query: 257 VNISPNENKLRKIKNSI 273
+P + K +K +I
Sbjct: 553 SASAPEQYKRLNLKATI 569
>gi|427779363|gb|JAA55133.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 417
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS Q A+ +P K I F + + AEL AL +L + + + + +D
Sbjct: 197 DGSTTLQRSSGAVVVPAKAITISFKTDHPTTSTAAELAALRAALRVVNREQPQRWSVFSD 256
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEELSST---ESPVEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV V+ L ++ V+F W PSH G+ GNE AD A+
Sbjct: 257 SKAALQSLLSALRHGPYEQLVFEVRHLLHTSIEKGHHVKFQWLPSHCGVIGNEHADSAAR 316
Query: 224 QAINND 229
A+ D
Sbjct: 317 SALQGD 322
>gi|358376777|dbj|GAA93294.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 255
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 144 AELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHENP-----LVK 188
AEL A+ ++ + Q+ T + A I++DS+S LQAI N +++ +
Sbjct: 97 AELMAIFYAISLVLQVTTKRQGRLDRGKQPATILSDSMSALQAIRNSANKSGQRIIRAIL 156
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKK 247
+ E+ + P+ W P H GN+ D AK+A+ +H + I+K+
Sbjct: 157 QAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKEAVGPRKMHPFKPLLSRENGFIRKR 216
Query: 248 YTEEWNTKWV 257
EW +W
Sbjct: 217 VLNEWKEEWA 226
>gi|425774046|gb|EKV12369.1| Reverse transcriptase, putative [Penicillium digitatum PHI26]
Length = 1225
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 30/141 (21%)
Query: 110 DGSKNEQGVGCAL--TIPEKDIVKRF---GLNKNASIFHAELFALLQSLLTIKQ------ 158
DGS + G+G A+ P + R G + +A+++ AEL A+ +L IK+
Sbjct: 979 DGSGYQGGIGAAVYPAYPYRRNEARLCNMGTDDDATVYAAELRAIEMALEVIKERFNDDN 1038
Query: 159 -----LGTCKALIITDSLSCLQAIMNMFHENPLVKRVQE---------ELSSTESPVEFL 204
L +I TD+ + L+AI +NP + Q E + + VE
Sbjct: 1039 EWRDCLAKSGVVIFTDNQATLRAI-----QNPRMPSGQVYLEGCLRLLEWCNDKIQVELR 1093
Query: 205 WCPSHVGIAGNETADEEAKQA 225
W P+H GI GNE AD AK+A
Sbjct: 1094 WVPAHEGIPGNEAADMYAKEA 1114
>gi|425773855|gb|EKV12180.1| hypothetical protein PDIG_45050 [Penicillium digitatum PHI26]
gi|425780488|gb|EKV18494.1| hypothetical protein PDIG_08080 [Penicillium digitatum PHI26]
gi|425781625|gb|EKV19579.1| hypothetical protein PDIG_02180 [Penicillium digitatum PHI26]
Length = 1381
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 30/141 (21%)
Query: 110 DGSKNEQGVGCAL--TIPEKDIVKRF---GLNKNASIFHAELFALLQSLLTIKQ------ 158
DGS + G+G A+ P + R G + +A+++ AEL A+ +L IK+
Sbjct: 979 DGSGYQGGIGAAVYPAYPYRRNEARLCNMGTDDDATVYAAELRAIEMALEVIKERFNDDN 1038
Query: 159 -----LGTCKALIITDSLSCLQAIMNMFHENPLVKRVQE---------ELSSTESPVEFL 204
L +I TD+ + L+AI +NP + Q E + + VE
Sbjct: 1039 EWRDCLAKSGVVIFTDNQATLRAI-----QNPRMPSGQVYLEGCLRLLEWCNDKIQVELR 1093
Query: 205 WCPSHVGIAGNETADEEAKQA 225
W P+H GI GNE AD AK+A
Sbjct: 1094 WVPAHEGIPGNEAADMYAKEA 1114
>gi|170051969|ref|XP_001862008.1| predicted protein [Culex quinquefasciatus]
gi|167872964|gb|EDS36347.1| predicted protein [Culex quinquefasciatus]
Length = 333
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 69 KILSSNYIAKTLSIENHP--NIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPE 126
++ S Y+ + L+I P I R + + +KY+NS + T DGSK+E G G A+
Sbjct: 14 QLYHSGYLPE-LAIRGEPVSRIPRIVEGIISQKYQNSIVFAT-DGSKDEDGCGYAVVDGS 71
Query: 127 KDIVKRFGLNKNASIFHAELFALLQSLLTIKQ 158
IVK+ L K S+F AEL A+ Q++ I Q
Sbjct: 72 FQIVKQIKLPKTVSVFLAELLAIRQAVQHIAQ 103
>gi|443691275|gb|ELT93184.1| hypothetical protein CAPTEDRAFT_223991 [Capitella teleta]
Length = 391
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 179 NMFHENPL----VKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNE 234
++F E PL K Q+ V FLWCPS+VGI G+E AD KQA+ V
Sbjct: 249 SLFFEAPLSIVNFKDAQQFSKKKGKLVVFLWCPSYVGILGDEVADRLTKQALVMPVTDLP 308
Query: 235 LFFDEVKI----IIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
L + K I+K + EW+ + ENKL ++ I
Sbjct: 309 LSHSDFKYPICSIVKSFWQSEWDDE------TENKLHSVQPVI 345
>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1031
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 110 DGSKNEQGVGCA-LTIPEKDIVKRFGLNKNASIFHAELFAL-LQSLLTIKQLGTCKALII 167
DGS G A IP ++ L AS AEL L L + L + L T ++
Sbjct: 912 DGSVMPDGTAAAACVIPSWATSRQCQLPFPASSTAAELAGLHLAADLLAENLPTEPVAVL 971
Query: 168 TDSLSCLQAIMNMFHEN---PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
DS + LQ + N L+ L+++ + V F W PSHVGIAGNE AD AK
Sbjct: 972 CDSRAALQTLANHRRAGLTGSLLASKFRALTASGASVSFHWLPSHVGIAGNEEADTLAK 1030
>gi|427784657|gb|JAA57780.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 104 NMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCK 163
M DGS N A+ +P +++ +F + + AEL AL ++ I Q +
Sbjct: 164 RMHVYTDGSTNSNSSTGAVVLPSDEVLLQFRYSHITTSTAAELAALQGAVKYILQQRPNR 223
Query: 164 ALIITDSLSCLQAIM----NMFHENPLVK---RVQEELSSTESPVEFLWCPSHVGIAGNE 216
I DS S L+A+ + HE + + EEL + F PSH GI GN+
Sbjct: 224 WAIFCDSRSALKALRLALRHGLHEQSVYEIRHDYHEELEEGHD-IIFELLPSHCGIVGND 282
Query: 217 TADEEAKQAINNDV 230
ADE A+ A + D+
Sbjct: 283 HADEAARSAHDQDL 296
>gi|353245589|emb|CCA76508.1| hypothetical protein PIIN_10501 [Piriformospora indica DSM 11827]
Length = 348
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 110 DGSKNEQGVGCALTIPE-----KDIVKRFGLNKNASIFHAEL--FALLQSLLTIKQLGTC 162
DGS E +G A + K + G ++ EL AL L Q
Sbjct: 45 DGSGMEGKIGAAAVLYRNGRRVKAVRYLLGAETEHTVHEGELVGIALGIHLARTMQGNRA 104
Query: 163 KALIITDSLSCLQAIMNMF-----H--ENPLVKRVQEELSSTES-PVEFLWCPSHVGIAG 214
K I D+ + +Q+I H EN ++ +++ELS +EF W P H GI G
Sbjct: 105 KVNISLDNQAAIQSITRARPNAGQHVVEN-ILSEIEDELSDYRRLRMEFTWVPGHEGIQG 163
Query: 215 NETADEEAKQAI 226
NE ADEEAK+AI
Sbjct: 164 NEAADEEAKKAI 175
>gi|427784659|gb|JAA57781.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 104 NMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCK 163
M DGS N A+ +P +++ +F + + AEL AL ++ I Q +
Sbjct: 164 RMHVYTDGSTNSNSSTGAVVLPSDEVLLQFRYSHITTSTAAELAALQGAVKYILQQRPNR 223
Query: 164 ALIITDSLSCLQAIM----NMFHENPLVK---RVQEELSSTESPVEFLWCPSHVGIAGNE 216
I DS S L+A+ + HE + + EEL + F PSH GI GN+
Sbjct: 224 WAIFCDSRSALKALRLALRHGLHEQSVYEIRHDYHEELEEGHD-IIFELLPSHCGIVGND 282
Query: 217 TADEEAKQAINNDV 230
ADE A+ A + D+
Sbjct: 283 HADEAARSAHDQDL 296
>gi|427798325|gb|JAA64614.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 339
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS + A IP + I + L ++ +EL AL ++ IK+ + + D
Sbjct: 171 DGSTTQTSSTGATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCD 230
Query: 170 S---LSCLQAIMNMFHENPLVKRVQEELSS-TES--PVEFLWCPSHVGIAGNETADEEAK 223
S L CL + + LV ++E L + TE V F W PSH I+GN+ ADE A+
Sbjct: 231 SKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCCISGNDLADEAAR 290
Query: 224 QA 225
+A
Sbjct: 291 EA 292
>gi|2232039|gb|AAB82087.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K LN+ + AEL A+L +L K+ K I+
Sbjct: 442 VDGAANRDTKLGKAGYVTEQGKQKIIKLNETTNQ-KAELMAVLLALQDSKE----KVNIV 496
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 497 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 550
>gi|427794505|gb|JAA62704.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 172
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF-RSSPVVSLEAETGEPN 63
+YK+LIRSKL+Y PV++ N + L VQN R + R++ + S +++ P+
Sbjct: 19 LYKTLIRSKLEYATPVWDPTHINLITALEMVQNNSARFIRANYSRTASITSTKSDLFLPS 78
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTL--NPLYV 97
L +RRK+ + IA + +HP + L P YV
Sbjct: 79 LSLRRKV---SRIALFHKMYHHPALRDRLIPQPFYV 111
>gi|49887134|gb|AAT68811.1| pol protein [Simian immunodeficiency virus]
Length = 1040
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Query: 86 PNIMRTLNPLYVRKYENSNMKPT------IDGSKN---EQGVGCALTIPEKDIVKRFGLN 136
P + P+ VR Y N +P +DG+ N ++G +T K +KR
Sbjct: 607 PEVKCVHTPILVRWYYNLVSEPVEAETFYVDGAANRNSKEGQAGYITDRGKQTLKRL--- 663
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEEL 194
+N + AEL A+L +L Q + I+TDS L +MN E+P+V+++ ++
Sbjct: 664 ENTTNQKAELEAVLMAL----QDSGPEVNIVTDSQYALGILMNCPTSSEHPVVEQIMQKA 719
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
E + W P+H GI GN+ D+ + I LF D +
Sbjct: 720 MEKEK-IYITWVPAHKGIGGNQEVDQLVSKGIRKI-----LFLDNI 759
>gi|51599140|gb|AAU08224.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 593 VDGAANKETKLGKAGYVTEQGRQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL++ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYVLGIISSQPTQSESPIVQQIIEELTNKEQ-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|116195376|ref|XP_001223500.1| hypothetical protein CHGG_04286 [Chaetomium globosum CBS 148.51]
gi|88180199|gb|EAQ87667.1| hypothetical protein CHGG_04286 [Chaetomium globosum CBS 148.51]
Length = 1554
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS------NSLQILNPVQNLCLRLATGAFRSSPVVSLEAE 58
IY +IRS + YG P +++ + + L +Q+ CLR+ GA+ ++P+ SLE E
Sbjct: 1229 IYSKVIRSAIAYGAPAFHTPTEVGGPPRGVAKELAKIQSECLRVVAGAYNATPIRSLETE 1288
Query: 59 TGEPNLDI 66
T P +D+
Sbjct: 1289 TYCPPIDL 1296
>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 362
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 106 KPTI--DGSKNEQGVGCALTIPEKDIVKR--FGLNKNASIFHAELFALLQSLLTIKQLGT 161
+P I D SK+ G C + + ++ R L SI AE A+ ++ I + G
Sbjct: 173 RPRIFTDASKSSDG-RCGIGVFDEQSGTRIMMQLKLGTSISTAETLAIQVAMQHIDKRGI 231
Query: 162 CKALIITDSLSC---LQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
A+++TDS L+ N N + + E+ + ++ W P HV + GNETA
Sbjct: 232 QNAVLLTDSQPVCLFLKKSRNSRMRNSVANDILEKAKRNRTTIQ--WIPGHVQVDGNETA 289
Query: 219 DEEAKQAINND-VIHNELF 236
D A+QA++ + V+ N++F
Sbjct: 290 DGLARQALSAEFVMENDIF 308
>gi|116200572|ref|XP_001226098.1| hypothetical protein CHGG_10831 [Chaetomium globosum CBS 148.51]
gi|88175545|gb|EAQ83013.1| hypothetical protein CHGG_10831 [Chaetomium globosum CBS 148.51]
Length = 368
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-----NSLQILNPVQNLCLRLATGAFRSSPVVSLEAET 59
IY +IRS + YG +++ + + + L +Q+ CLR+ GA++++P+ SLE ET
Sbjct: 44 IYSKVIRSAIAYGASAFHTPTEVGPPRGAAKELAKIQSECLRVVAGAYKATPIQSLETET 103
Query: 60 GEPNLDI 66
P +D+
Sbjct: 104 YCPPIDL 110
>gi|242825810|ref|XP_002488515.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712333|gb|EED11759.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 488
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQE-------ELSSTESPVEFLWCPSHVGIAGNETA 218
I++DS S +QAI N N +RV E EL S P+ W P H GN+ A
Sbjct: 240 ILSDSKSAIQAIKNP--RNTSGQRVIEAINQSAYELDSRGIPLRLQWIPGHCDDPGNDAA 297
Query: 219 DEEAKQAINNDVIHNELFFDEV---KIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILP 275
D AK A+ IH F V K I+++ +EW +W S LR+I ++ LP
Sbjct: 298 DCLAKAAVGPTKIHP--FCRPVSREKAAIRRQILKEWEDEW-KTSNKGTHLRRI-DTKLP 353
Query: 276 S 276
+
Sbjct: 354 A 354
>gi|116194171|ref|XP_001222898.1| hypothetical protein CHGG_06803 [Chaetomium globosum CBS 148.51]
gi|88182716|gb|EAQ90184.1| hypothetical protein CHGG_06803 [Chaetomium globosum CBS 148.51]
Length = 1106
Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS------NSLQILNPVQNLCLRLATGAFRSSPVVSLEAE 58
IY +IRS + YG +++ + + + L +Q+ CLR+ GA++++P+ SLE E
Sbjct: 768 IYSKVIRSAIAYGASAFHTPTEVGGPPRGAAKELAKIQSECLRVVAGAYKATPIRSLETE 827
Query: 59 TGEPNLD--IRRKILS 72
T P +D + R++L+
Sbjct: 828 TYCPPIDLYLNRRLLA 843
>gi|3776301|gb|AAC64709.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 442 VDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 496
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 497 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 550
>gi|384500472|gb|EIE90963.1| hypothetical protein RO3G_15674 [Rhizopus delemar RA 99-880]
Length = 1171
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y S +R KL+YG + + + + LN VQ+ CLR+ G R+S V L P+
Sbjct: 894 RLYASFVRPKLEYGLAIAHLLKKDYTE-LNRVQDRCLRMIVGGHRTSSTVVLRHICNLPS 952
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+D R L Y + + N
Sbjct: 953 MDFRADTLVLKYCLRVSGLPN 973
>gi|393223141|gb|EJD32170.1| hypothetical protein AURDEDRAFT_44782, partial [Auricularia
delicata TFB-10046 SS5]
Length = 273
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
R+Y + IR L Y V+ + +Q L+ VQNLCLRL F++SP+ +LE E P
Sbjct: 208 RLYIACIRPILIYASAVWWMQMAWQVQQLSRVQNLCLRLICAVFKTSPIYALEIEAAIP 266
>gi|37935851|gb|AAO47103.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 595 VDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 649
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 650 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 703
>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 166 IITDSLSCLQAIMNMF-----HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I++DS S LQ + N H + + +L + + W PSH GN+TAD
Sbjct: 1367 ILSDSKSGLQTLTNQRNGSGQHIVRAIAKSARDLKAHGVSIRLQWIPSHCNNPGNDTADR 1426
Query: 221 EAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
AK+A+ H + K I+ + EW+++W + S + LR+I S+
Sbjct: 1427 LAKEAVGTQPSHPFQNLLSREKAFIRDRVLAEWDSEWKSSSKGAH-LRRIDASL 1479
>gi|3776303|gb|AAC64710.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 442 VDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 496
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 497 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 550
>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 1139
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 166 IITDSLSCLQAIMNMFHEN-----PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I++DS S LQAI N +++ + + EL S + W P H GN+ AD
Sbjct: 891 ILSDSKSALQAIRNPSNKSGQRVIQAINQSAYELDSRGISLRLQWIPGHCDDPGNDAADH 950
Query: 221 EAKQAINNDVIHNELFFDEV---KIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
AK A+ D H F V K I+K+ +EW +W S LR+I +S LPS
Sbjct: 951 LAKTAVGLDKTHP--FCRPVSREKAAIRKQILKEWEDEW-KASRKGAHLRRI-DSTLPS 1005
>gi|321458920|gb|EFX69980.1| hypothetical protein DAPPUDRAFT_257795 [Daphnia pulex]
Length = 143
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 92 LNPLYVRKYENSNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFAL 149
+N + ++E + + T DGS N+ + A+TIP +I + L +N+S+F AE A+
Sbjct: 1 MNQIKRAQFETTTIAYT-DGSPNKSTEKTTFAVTIPSLEIEEVTTLTRNSSVFTAEAKAI 59
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSH 209
+++ I L D ++ L + N S+ + V W PSH
Sbjct: 60 NKAMELIYNLD--------DQVAELTTLDN--------------CKSSGTKVNLYWIPSH 97
Query: 210 VGIAGNETADEEAKQAIN 227
VGI GNE AD A + N
Sbjct: 98 VGIPGNEVADRLASEESN 115
>gi|242811714|ref|XP_002485806.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
gi|218714145|gb|EED13568.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
Length = 275
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN--ELFFDEVK 241
R E+L+S PV W P H G+ GNE AD+ AK+A + H LF +K
Sbjct: 61 RAAEKLASRGQPVTIQWVPGHSGVEGNEQADQAAKRAASKHTAHGFEHLFLAYIK 115
>gi|37935980|gb|AAO47217.1| pol protein [Human immunodeficiency virus 1]
Length = 1027
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E K L++ + AEL A+L +L K+ K I+
Sbjct: 611 VDGAANRETKLGKAGYVTELGKQKIIKLDETTNQ-KAELMAILLALQDSKE----KVNIV 665
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 666 TDSQYALGIISSQPTQSESPIVQQIIEELTRKEQ-VYLAWVPAHKGIGGNEKIDKLVSKD 724
Query: 226 I 226
I
Sbjct: 725 I 725
>gi|342320199|gb|EGU12141.1| hypothetical protein RTG_01755 [Rhodotorula glutinis ATCC 204091]
Length = 539
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 131 KRFGLNKNASIFHAELFAL---LQSLLTIKQLGTCKALIIT-DSLSCLQAIMNMF----- 181
+R + + +++ EL L L SLL + T A++I+ D+ S L ++
Sbjct: 209 ERRRMGQRQTVYTGELDGLRLALASLLVTQSADTLLAVLISLDNTSALTHSTDLTPSSGQ 268
Query: 182 HENPLVKRVQEELSSTESP--VEFLWCPSHVGIAGNETADEEAKQAIN 227
H +++ EEL+ T V W P HVGI GNE AD EAK A+
Sbjct: 269 HLRLAIRQALEELARTRKDILVRLSWSPGHVGIEGNEAADFEAKGAVR 316
>gi|37935841|gb|AAO47094.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 593 VDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEQIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|992561|gb|AAA99879.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1027
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E+ K L++ + AEL A+L +L K+ I+
Sbjct: 611 VDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAILLALQDSKE----TVNIV 665
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 666 TDSQYALGVISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDKLVSKD 724
Query: 226 I 226
I
Sbjct: 725 I 725
>gi|357621762|gb|EHJ73487.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 261
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSH 209
+Q +K + + + I+ +L+ L N +P V ++ + T +EF W +H
Sbjct: 63 MQRAFALKAIRGFRTVSISAALA-LAIPSNRSKTHPWVAKIHSTVHHTSGSIEFAWVKAH 121
Query: 210 VGIAGNETADEEAKQA--INNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
VGI GNE AD K+A ++ + + +K + +T W +++
Sbjct: 122 VGIVGNEAADTAVKRAAKLHKAPDYTQFLITFIKHSTRSLHTSVWQSRY 170
>gi|3776305|gb|AAC64711.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 109 IDGSKNEQ-GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 442 VDGAANRNTKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALQDSKE----KVNIV 496
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 550
>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
[Acyrthosiphon pisum]
Length = 164
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 203 FLWCPSHVGIAGNETADEEAKQAIN--NDVIHNELFFDEVKIIIKKKYTEEWNTKWVNIS 260
++W P H GI GNE AD EA +A + + + N +++ K IK+ ++W +W+N
Sbjct: 7 YMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQWIN-- 64
Query: 261 PNENKLRKIKNSI 273
KL +IKN+I
Sbjct: 65 -QHTKLNQIKNNI 76
>gi|14041623|emb|CAC38389.1| pol [Human immunodeficiency virus 1]
Length = 1009
Score = 46.6 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A I EK K L + + AEL A+L +L K+ I+
Sbjct: 593 VDGAANRDTKLGKAGYITEKGKQKIIKLEETTNQ-KAELMAVLLALQDSKE----TVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+PLV+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYVLGIISSQPTQSESPLVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|2708267|gb|AAB92394.1| putative reverse transcriptase [Drosophila subobscura]
Length = 675
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 10/159 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL---I 166
DGSK + VG + +I F L + S+F AE+ A+ ++L +++L T +A I
Sbjct: 400 DGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQEL-TPEATYINI 458
Query: 167 ITDSLSCLQAIMNMFHENPLVKRVQEELS--STESPVEFLWCPSHVGIAGNETADEEAKQ 224
+DS + ++++ + + V ++ L + + + +W P H I GN ADE A+
Sbjct: 459 YSDSQAAIKSLNAITTSSATVANCRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELARA 518
Query: 225 AIN----NDVIHNELFFDEVKIIIKKKYTEEWNTKWVNI 259
ND + K+ IK+ + + N +W +
Sbjct: 519 GTTIPLLNDKEDIRMPMATCKLRIKEHFKKLTNDRWQTV 557
>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
Length = 1312
Score = 46.6 bits (109), Expect = 0.013, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 131 KRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRV 190
+ G + ++++ EL + +L +++ T A + DS + +QA+ N P + +
Sbjct: 1040 RTLGTEEESTVYAGELTGIRMALHRLRK-ETRPATVFVDSEAAIQAVQN--PRRPSGQYI 1096
Query: 191 QEELS------STESPVEFLWCPSHVGIAGNETADEEAK---QAINNDVIHNELFFDEVK 241
+++ + + V+ W P+H+G+ GNE ADE A+ Q + +++
Sbjct: 1097 LDQIYYIVRRYNMQGRVQIRWIPAHIGVPGNEAADEAAREGTQKAGEAICLAAAAKRQIR 1156
Query: 242 IIIKKKYTEEWNTK 255
IK ++T EW +
Sbjct: 1157 RRIKDRWTREWKAE 1170
>gi|322782100|gb|EFZ10335.1| hypothetical protein SINV_09428 [Solenopsis invicta]
Length = 225
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN------DVIHNELFFDEV 240
V +W P+HVGIAGNE ADE AK+A + + H +LF D +
Sbjct: 6 VTLVWIPAHVGIAGNEKADETAKEASRSGLKPRFKIPHTDLFADAI 51
>gi|116221958|ref|XP_001230263.1| hypothetical protein CHGG_11113 [Chaetomium globosum CBS 148.51]
gi|88175385|gb|EAQ82861.1| hypothetical protein CHGG_11113 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 178 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 237
Query: 57 AETGEPNLDIRRKILSSNYIAKTLSIENHPNIMR 90
ET P LD+ ++ + A+ L + I R
Sbjct: 238 TETWVPPLDL---VVEEAWKARWLKERDGRAITR 268
>gi|443684282|gb|ELT88245.1| hypothetical protein CAPTEDRAFT_27962, partial [Capitella teleta]
Length = 130
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF 47
L+++++S+IRS +DYG VY SA + L+ L VQN LR GAF
Sbjct: 85 LLKLFRSIIRSTIDYGSVVYGSARPSYLKRLGVVQNGALRTCLGAF 130
>gi|290994164|ref|XP_002679702.1| predicted protein [Naegleria gruberi]
gi|284093320|gb|EFC46958.1| predicted protein [Naegleria gruberi]
Length = 406
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 38 LCLRLATGAFRSSPVVSLEAETGEPNLDIRRK-----------ILSSNYIAKTLSIENHP 86
LC L S+P+V + G N + + IL + + T+ NH
Sbjct: 23 LCNNLINKFHSSNPLVREAVQYGINNCNTNKTKLHNIFEKFHYILKQHKLTTTICNTNH- 81
Query: 87 NIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVK--RFGLNKNASIFHA 144
+ L +Y S DGSK+E VG ++ I + K ++ L+ S A
Sbjct: 82 ---QLLEKEKDEQYSYSEFTIWTDGSKSENKVGFSVIIQNNEFTKGYKYKLHSYHSNNMA 138
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE----LSSTESP 200
EL A+ +L I A ++TDS ++ I N ++ K++++E +S+ +
Sbjct: 139 ELSAITTALHIIPP--NSNAKVLTDSEIAVKIIYNTNYKGQF-KQIKDEITNLISTKKLQ 195
Query: 201 VEFLWCPSHVGIA-GNETADEEAKQA 225
W +H GI GN AD++AKQA
Sbjct: 196 ASIEWTKAHTGITDGNNYADKKAKQA 221
>gi|241567430|ref|XP_002402293.1| conserved hypothetical protein [Ixodes scapularis]
gi|215501983|gb|EEC11477.1| conserved hypothetical protein [Ixodes scapularis]
Length = 345
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 110 DGSKNE-QGVG-CALTIPEKDIVKRFG--LNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
DGS + +G A+ IP I +R L +AS AEL A+ L + +A+
Sbjct: 72 DGSVDPVRGTASAAVFIPH--IGRRLAERLTFHASSTTAELAAIETGLRELFPWPPGRAV 129
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETADEEA 222
+++DS + L+ ++ PL + V L + F W PSH GI GNE AD+ A
Sbjct: 130 VLSDSRTALRHLLRTDDAPPLARSVVSLTLRLRDRGWEIAFQWVPSHCGIPGNEEADKLA 189
Query: 223 KQAINNDVIHNELF--FDEVKIIIKKK 247
+N F++ +++++++
Sbjct: 190 GLVHDNPDFPASTASRFNDARLLVRRR 216
>gi|407915598|gb|EKG09164.1| hypothetical protein MPH_13848 [Macrophomina phaseolina MS6]
Length = 275
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 137 KNASIFHAELF---------ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLV 187
+N S+ AE+F L + + L ++ D+ S +Q I P
Sbjct: 21 QNGSLHKAEVFDAEIRGAAEGLTWAATNAEALQATNVVLCIDNTSVIQGIDG---HTPAS 77
Query: 188 KRVQ-EELSSTES----PVEFLWCPSHVGIAGNETADEEAKQAIN 227
+ Q L ST PVE WCP H+GI GNE AD+ AK AI+
Sbjct: 78 SQSQFTRLKSTRQELRIPVETRWCPGHMGITGNEEADQLAKAAID 122
>gi|358376556|dbj|GAA93101.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 922
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + Q+ + A I++DS+S LQAI N + +
Sbjct: 668 SVYAAELMAIFYAISLVLQVTQKRQSQSDKVEHPATILSDSMSALQAIRNPSNRSGQRTI 727
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
+ + E+ + P+ W P H GN+ AD AK+A+ +H
Sbjct: 728 RAILQAASEMKARGIPIRLQWVPGHCNDPGNDEADRLAKEAVGPSKMH 775
>gi|296423236|ref|XP_002841161.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637395|emb|CAZ85352.1| unnamed protein product [Tuber melanosporum]
Length = 564
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 110 DGSKNEQGVGCALTIPEK----DIVKRFGLNKNASIFHAELFALLQSL----LTIKQLGT 161
DGSKN G A+ +I K +GL +I+ AEL+A+ +++ ++ G
Sbjct: 357 DGSKNGLEAGAAVWRKADSRGGEIKKMYGLGTRMTIYDAELYAIWKAIGLGGRVARERGA 416
Query: 162 CKALIITDSLSCLQAIMNMFHENP-----LVKRVQ-EELSSTES-PVEFLWCPSHVGIAG 214
K I DS + L +M P L R Q ++L T V W SH GI G
Sbjct: 417 KKLTICADSQAAL-GVMARGTIGPGSHLALRGRAQMKDLHHTHGIDVALEWVRSHAGIRG 475
Query: 215 NETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
N D+ A+ A + + E+ + +++ EEW
Sbjct: 476 NIRVDKLARAACAIRQKQKDSYTSEI-LAERRRSREEW 512
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E+ K L++ + AEL A+L +L K+ I+
Sbjct: 1028 VDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAILLALQDSKET----VNIV 1082
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 1083 TDSQYALGVISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 1136
>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 427
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 110 DGSKNEQGVGCALTIPEKD---IVKR---FGLNKNASIFHAELFALLQSL-LTIK----- 157
D S ++ +G A + +++ +V R G + SI AEL + ++ L +K
Sbjct: 106 DASGHDNHLGAAAVVLDRNQNIVVSRKTAIGPMAHWSIHIAELIGVYYAISLALKIFHQN 165
Query: 158 ----QLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRVQE-------ELSSTESPVEFLW 205
+ G +A+ I++DS S +QAI N N +RV E EL S P+ W
Sbjct: 166 GQSTRPGAGEAITILSDSKSAIQAIKNP--RNTSGQRVIEAINQSAYELDSRGIPLHLQW 223
Query: 206 CPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV---KIIIKKKYTEEWNTKW 256
P H GN+ AD AK A+ H F V K I+++ +EW +W
Sbjct: 224 IPGHCDNLGNDAADRLAKAAVGPTKTHP--FCRPVSREKAAIQRQILKEWEDEW 275
>gi|116201419|ref|XP_001226521.1| hypothetical protein CHGG_08594 [Chaetomium globosum CBS 148.51]
gi|88177112|gb|EAQ84580.1| hypothetical protein CHGG_08594 [Chaetomium globosum CBS 148.51]
Length = 756
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG P ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 456 VYVKCIRSAIAYGAPSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 515
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 516 EAWVPPLDL 524
>gi|444892692|gb|AGE13501.1| pol protein, partial [Human immunodeficiency virus]
Length = 1008
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ + E +G A + E+ K L++ + AEL A+L +L K+ K I+
Sbjct: 592 VDGAASRETKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAVLLALKDSKE----KVNIV 646
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ Q
Sbjct: 647 TDSQYVLGIISSQPTQSESPIVQQIIEELTRKEQ-VYLAWVPAHKGIGGNEKIDKLVSQD 705
Query: 226 I 226
I
Sbjct: 706 I 706
>gi|299745166|ref|XP_001831512.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
gi|298406463|gb|EAU90359.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
Length = 289
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELF-------FDEVKIIIKKKYTEEWN 253
+ WCPSH GI GNE D AKQA N + HN K+ +K++T+EW+
Sbjct: 64 IHLTWCPSHHGIPGNERVDRLAKQATN--LAHNAPITISRTNAIRRAKLAAQKEWTQEWS 121
>gi|321461855|gb|EFX72883.1| hypothetical protein DAPPUDRAFT_325799 [Daphnia pulex]
Length = 141
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 103 SNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLG 160
++++ DGSK+ + CA+ IP + + L+K SIF E+ A+ Q+L +
Sbjct: 21 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLSKGFSIFTVEVTAIYQALKLFYDMD 80
Query: 161 TC--KALIITD-SLSCLQAIMNMFHENPLVKRVQE---ELSSTESPVEFLWCPSHVGIAG 214
C +A+I +D S + N N + +E L S+ + W PSH GI G
Sbjct: 81 DCPPEAIIYSDSSSAITAISSNSLSGNEAITATREIIASLKSSGTRTRLTWIPSHTGIEG 140
Query: 215 N 215
N
Sbjct: 141 N 141
>gi|358376403|dbj|GAA92959.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 136
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 140 SIFHAELFALLQSLLTIKQLGT----------CKALIITDSLSCLQAIMNMFHEN----- 184
S++ AEL A+ ++ + L A I++DS+S LQ I N ++++
Sbjct: 5 SVYAAELLAIYYAIGLVFHLAQKSPAAATTTRGPATILSDSMSALQVIANSWNKSNQRNI 64
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + EL E P+ F W P G GN+TA A++A + H K
Sbjct: 65 QAIHQSAGELKPREIPLRFQWVPGPCGDPGNDTAARLAEEAAGLEKKHPFRRLLSHEKKH 124
Query: 244 IKKKYTEEW 252
I+ K ++EW
Sbjct: 125 IRNKISKEW 133
>gi|83775366|dbj|BAE65488.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1187
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 133 FGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQE 192
G + ++++ EL + +L +++ T A + DS + +QAI N P + + +
Sbjct: 922 LGTEEESTVYAGELTGIRMALHRLRR-ETRPATVFVDSQAAIQAIQN--PRRPSGQYILD 978
Query: 193 ELS------STESPVEFLWCPSHVGIAGNETADEEAKQAINND--------VIHNELFFD 238
++ + ++ V+ W P+H+G+ GNE ADE A++ + +
Sbjct: 979 QIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAADEAAREGATREGTQQTGEAICLAAAAKR 1038
Query: 239 EVKIIIKKKYTEEWNTKWVNISPNENKLRKIKN 271
+++ IK ++ EW T+ P +L ++ N
Sbjct: 1039 QIRRSIKDRWIREWKTE--KTGPTTYRLVEVPN 1069
>gi|317157858|ref|XP_001826621.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1012
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 133 FGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQE 192
G + ++++ EL + +L +++ T A + DS + +QAI N P + + +
Sbjct: 747 LGTEEESTVYAGELTGIRMALHRLRR-ETRPATVFVDSQAAIQAIQN--PRRPSGQYILD 803
Query: 193 ELS------STESPVEFLWCPSHVGIAGNETADEEAKQAINND--------VIHNELFFD 238
++ + ++ V+ W P+H+G+ GNE ADE A++ + +
Sbjct: 804 QIYYIIRRYNMQNRVQIHWIPAHIGVPGNEAADEAAREGATREGTQQTGEAICLAAAAKR 863
Query: 239 EVKIIIKKKYTEEWNTKWVNISPNENKLRKIKN 271
+++ IK ++ EW T+ P +L ++ N
Sbjct: 864 QIRRSIKDRWIREWKTE--KTGPTTYRLVEVPN 894
>gi|119181104|ref|XP_001241800.1| hypothetical protein CIMG_05696 [Coccidioides immitis RS]
Length = 148
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 131 KRFGLNKNASIFHAELFAL---LQSLLTIKQLGTC--KALIITDSLSCLQAIMNMFHENP 185
+ G + ++++ EL L L+ +L + GT K I T++ + +QAI N H +
Sbjct: 50 QYMGPSSTSTVYAVELRGLVLALEIILDLHATGTTPRKCAIFTNNQAAIQAIWNPKHSSG 109
Query: 186 ---LVKRVQ--EELSSTESPVEFLWCPSHVGIAGNETAD 219
L++ VQ + L + V+F W P+HVG+ GNE AD
Sbjct: 110 KYILIEAVQALDMLQNLGWEVQFQWIPAHVGVLGNEEAD 148
>gi|331242530|ref|XP_003333911.1| hypothetical protein PGTG_15334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 475
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 110 DGSKN-EQGVGCALTIPEKDIVKR--FGLNKNASIFHAELFALLQSL----LTIKQLGTC 162
DGS + ++G+G A + V+ G + AS F EL + L + + G
Sbjct: 284 DGSAHPKEGLGAAAVTADGLSVQMAFLGPPEIASNFECELVGIRLGLEMGRVLTTEAGFR 343
Query: 163 KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL---------WCPSHVGIA 213
+ +++TDS QA + L K Q LS + E + WCP HVGIA
Sbjct: 344 QIVLLTDS----QAAIERMRRPGLPKSGQYLLSQIQEAAEMIPPFVYITVRWCPGHVGIA 399
Query: 214 GNETADEEAKQAIN 227
GN+ AD +A +A N
Sbjct: 400 GNKLADAKAGEARN 413
>gi|37935911|gb|AAO47155.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.8 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L + + AEL A+L +L K+ K I+
Sbjct: 593 VDGAANRDTKLGKAGYVTEQGKQKIIKLEETTNQ-KAELMAVLVALQDSKE----KVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYVLGIISSQPTQSESPIVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|384491964|gb|EIE83160.1| hypothetical protein RO3G_07865 [Rhizopus delemar RA 99-880]
Length = 298
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y S +R KL+YG + + N + LN VQ+ CLR+ G R+S V L P+
Sbjct: 21 RLYASFVRPKLEYGLAIAHLLKKNYTE-LNRVQDRCLRMIVGGHRASSTVVLRHICNLPS 79
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+D R L Y + + +
Sbjct: 80 MDFRADTLVLKYCLRVSGLPD 100
>gi|425781333|gb|EKV19307.1| hypothetical protein PDIG_03370 [Penicillium digitatum PHI26]
Length = 648
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 133 FGLNKNASIFHAELFALLQSLLTIK-----------QLGTCKALIITDSLSCLQAIMN-- 179
G + +A+++ AEL A+ +L I+ +L A+I TD+ + L+AI N
Sbjct: 307 MGSDDDATVYAAELHAIEMALEVIQYQFTSNDDWRERLAERGAVIFTDNQAALKAIKNPK 366
Query: 180 -----MFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
++ E L R+ + S ++ VE W P+H GI GNE D AK A
Sbjct: 367 MPSGQVYLEGSL--RLLDWCSKSKIQVELRWIPAHEGIPGNEHVDMLAKSA 415
>gi|302594740|gb|ADL59558.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L + + AEL A+L +L K+ K I+
Sbjct: 2 VDGAANRDTKLGKAGYVTEQGKQKIIKLEETTN-QKAELMAVLLALQDSKE----KVNIV 56
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + ++P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 57 TDSQYVLGIISSQPTQSDSPIVQQIIEELTKKEK-VYLTWVPAHKGIGGNEKIDK 110
>gi|116191581|ref|XP_001221603.1| hypothetical protein CHGG_05508 [Chaetomium globosum CBS 148.51]
gi|88181421|gb|EAQ88889.1| hypothetical protein CHGG_05508 [Chaetomium globosum CBS 148.51]
Length = 564
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 253 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 312
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 313 TETWVPPLDL 322
>gi|116198497|ref|XP_001225060.1| hypothetical protein CHGG_07404 [Chaetomium globosum CBS 148.51]
gi|88178683|gb|EAQ86151.1| hypothetical protein CHGG_07404 [Chaetomium globosum CBS 148.51]
Length = 402
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 91 VYTKCIRSALAYGASSFHIPTDVGSEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 150
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 151 TETWVPPLDL 160
>gi|116201803|ref|XP_001226713.1| hypothetical protein CHGG_08786 [Chaetomium globosum CBS 148.51]
gi|88177304|gb|EAQ84772.1| hypothetical protein CHGG_08786 [Chaetomium globosum CBS 148.51]
Length = 1577
Score = 45.8 bits (107), Expect = 0.023, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG P ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 1246 VYVKCIRSAIAYGAPSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 1305
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 1306 EAWVPPLDL 1314
>gi|242805368|ref|XP_002484512.1| hypothetical protein TSTA_040390 [Talaromyces stipitatus ATCC
10500]
gi|218715137|gb|EED14559.1| hypothetical protein TSTA_040390 [Talaromyces stipitatus ATCC
10500]
Length = 319
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 15/134 (11%)
Query: 107 PTIDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFAL---LQSLLTIKQ-- 158
P + QG +G A+ IP K ++ G ++++ AE + LQ +L + +
Sbjct: 16 PRVVVDDGYQGYIGAAMVIPALGKQKIECIGTEDTSTVYAAEACGIKFALQIVLWLAEES 75
Query: 159 --LGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEELSSTESP---VEFLWCPSHVG 211
L K +I +DS + LQ + N M ++ E L VE W P H G
Sbjct: 76 VRLIVRKPVIFSDSQAVLQTLQNPRMVSGQVYIRDCVELLKECIEEGINVEIRWIPGHEG 135
Query: 212 IAGNETADEEAKQA 225
+ GNETAD AK+A
Sbjct: 136 VPGNETADRAAKRA 149
>gi|116201343|ref|XP_001226483.1| hypothetical protein CHGG_08556 [Chaetomium globosum CBS 148.51]
gi|88177074|gb|EAQ84542.1| hypothetical protein CHGG_08556 [Chaetomium globosum CBS 148.51]
Length = 402
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 91 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 150
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 151 TETWVPPLDL 160
>gi|343428557|emb|CBQ72087.1| related to Reverse transcriptase [Sporisorium reilianum SRZ2]
Length = 2266
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 72/289 (24%), Positives = 115/289 (39%), Gaps = 49/289 (16%)
Query: 17 GCPVYNSASSNSLQILNPVQNLCLRLATGAFR---SSPVVSLEAETGEPNLDIRRKILSS 73
GC N +SN + + LRLA R S +++ + G L + S+
Sbjct: 1854 GCLALNGGASNRDSLALACCHSTLRLAAQRERRLCSPTILAGLSPCGTAPLRVPPARPST 1913
Query: 74 NYIA----KTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVG--CALT--IP 125
+A K ++ H I+R ++ ++ + T DGS+ + GVG C +T +
Sbjct: 1914 PVVAIAPSKEEAVRQHDAILR--------EHADATLVYT-DGSRLDSGVGFGCYVTGLLT 1964
Query: 126 EKDIVKRFGLNK-NASIFHAELFALLQSLLTIKQLGTCKA---------LIITDSLSCLQ 175
+ GLN + IF AEL A+ L A I TDS S LQ
Sbjct: 1965 GQPHASSQGLNPLHNDIFEAELSAITAGLRACLPDAKGDAPPPSSLPPIYIFTDSASSLQ 2024
Query: 176 AIMNMFHEN--------PLVKRVQEELSSTESP-VEFLWCPSHVGIAGNETADEEAKQ-- 224
+ + ++ +++ + L P V F+W P HVG+AGNE AD A++
Sbjct: 2025 RLNCPWSQDRRAGQRRCAIIRTIVHTLLRLGCPSVHFVWVPGHVGVAGNELADRLARRGA 2084
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVN--------ISPNENK 265
A+ N V+ I++ T+W +SPN K
Sbjct: 2085 ALQNQATDATANLGPVRARIREASQALRQTRWNKEPSRHLHEVSPNVGK 2133
>gi|256252577|dbj|BAH97686.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQK------------AELMAVLLALQD 639
Query: 156 IKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ K I+TDS L I + E+P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----KVNIVTDSQYTLGIISSQPTQSESPIVQQIIEELTKKEK-VYLTWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ + I
Sbjct: 695 GNEKIDKLVSKDI 707
>gi|256252567|dbj|BAH97677.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQK------------AELMAVLLALQD 639
Query: 156 IKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ K I+TDS L I + E+P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----KVNIVTDSQYTLGIISSQPTQSESPIVQQIIEELTKKEK-VYLTWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ + I
Sbjct: 695 GNEKIDKLVSKDI 707
>gi|37935871|gb|AAO47121.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKIIKLEETTNQK------------AELMAVLLALQD 639
Query: 156 IKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ K I+TDS L I + E+P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----KVNIVTDSQYTLGIISSQPTQSESPIVQQIIEELTKKEK-VYLTWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ + I
Sbjct: 695 GNEKIDKLVSKDI 707
>gi|294889789|ref|XP_002772958.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877569|gb|EER04774.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 382
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 110 DGSKNEQGVGCA-LTIPEKDIVKR--FGLNKNASIFHAELFALLQSL--LTIKQLGTCKA 164
DGSK G A L + E ++V+R F L + A+I EL A+ ++L L+ +
Sbjct: 199 DGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGIEW 258
Query: 165 LIITDSLSCLQAIMNM-FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
L+ TDS + ++ I E + R LS V+ WCP H G+ NE D+ A
Sbjct: 259 LLFTDSQASIRTIRGREATERSAIARDIAHLS-LHVKVQLNWCPGHEGVQWNEAVDQLA 316
>gi|37935891|gb|AAO47138.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L + + AEL A+L +L K+ K I+
Sbjct: 593 VDGAANRDTKLGKAGYVTEQGKQKIIKLEETTNQ-KAELMAVLLALQDSKE----KINIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYALGIISSQPTQSESPIVQQIIEELTKKEK-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
Length = 116
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 183 ENPLVKRVQEEL---SSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDE 239
+NPLV ++ L S + + W PS VGI GNE AD A A + V +++ + +
Sbjct: 5 QNPLVLEIRNRLFSASKRKKEITLCWVPSRVGIPGNEDADRVASSAKDRQVDLHKIPYTD 64
Query: 240 VKIIIKK----KYTEEWN 253
K +KK ++ EEWN
Sbjct: 65 YKHALKKSTKCRWQEEWN 82
>gi|116195034|ref|XP_001223329.1| hypothetical protein CHGG_04115 [Chaetomium globosum CBS 148.51]
gi|88180028|gb|EAQ87496.1| hypothetical protein CHGG_04115 [Chaetomium globosum CBS 148.51]
Length = 487
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 151 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 210
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 211 TETWVPPLDL 220
>gi|427783055|gb|JAA56979.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 485
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
DGS N Q A+ +P + I F + + AEL AL +L + + + I +D
Sbjct: 197 DGSTNLQFSSGAVVVPARAITISFRTDHPTTSTAAELAALRAALCFVNREPPQQWSIFSD 256
Query: 170 SLSCLQAIMNMFHENP---LVKRVQEELSSTESP---VEFLWCPSHVGIAGNETADEEAK 223
S + LQ++++ P LV ++ L ++ V F W PSH G+ GNE AD A+
Sbjct: 257 SKAALQSMLSALRRGPYEQLVFEIRGLLHASHEKGHHVTFQWLPSHCGVIGNEHADNAAR 316
Query: 224 QAINN 228
A+ +
Sbjct: 317 AALED 321
>gi|116181686|ref|XP_001220692.1| hypothetical protein CHGG_01471 [Chaetomium globosum CBS 148.51]
gi|88185768|gb|EAQ93236.1| hypothetical protein CHGG_01471 [Chaetomium globosum CBS 148.51]
Length = 877
Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 640 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 699
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 700 TETWVPPLDL 709
>gi|116200341|ref|XP_001225982.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
gi|88179605|gb|EAQ87073.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
Length = 1647
Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 1336 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 1395
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 1396 TETWVPPLDL 1405
>gi|154282395|ref|XP_001541993.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410173|gb|EDN05561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 608
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 379 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 438
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 439 EAETHTVPLDI 449
>gi|116208080|ref|XP_001229849.1| hypothetical protein CHGG_03333 [Chaetomium globosum CBS 148.51]
gi|88183930|gb|EAQ91398.1| hypothetical protein CHGG_03333 [Chaetomium globosum CBS 148.51]
Length = 500
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 246 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKTQNKSLRIVAGAFKSTPIRNLE 305
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 306 TETWVPPLDL 315
>gi|116180586|ref|XP_001220142.1| hypothetical protein CHGG_00921 [Chaetomium globosum CBS 148.51]
gi|88185218|gb|EAQ92686.1| hypothetical protein CHGG_00921 [Chaetomium globosum CBS 148.51]
Length = 626
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 315 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 374
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 375 TETWVPPLDL 384
>gi|393223917|gb|EJD32551.1| hypothetical protein AURDEDRAFT_178361 [Auricularia delicata
TFB-10046 SS5]
Length = 162
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 12/163 (7%)
Query: 29 LQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYIAKTLSIENHPNI 88
+Q L+ VQNLCLRL F++SP+ +LE E P + + + A+ + +
Sbjct: 5 VQQLSRVQNLCLRLICAVFKTSPIYALEIEAAIPPISKVLDKVDRDTAARLHKLGPRSPV 64
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVG-CALTIPEKDIVKRFGLNKNASIFHAELF 147
++ L +EN + GS G G + + + + K A ++ AE+
Sbjct: 65 LQRLR----DSWENHRLAGD-SGSGRSTGAGFVSYHLGVELTSGCVPMGKKAEVYDAEMH 119
Query: 148 ALLQSLLTIK----QLGTCKAL-IITDSLSCLQAIMNMFHENP 185
A+ +++ ++ LGTC L D+ S ++AI+ H P
Sbjct: 120 AMSSAIVGLENLDNDLGTCTLLYFFADNSSSVEAILQE-HPGP 161
>gi|116200255|ref|XP_001225939.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
gi|88179562|gb|EAQ87030.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
Length = 1559
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 1248 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 1307
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 1308 TETWVPPLDL 1317
>gi|290992276|ref|XP_002678760.1| predicted protein [Naegleria gruberi]
gi|284092374|gb|EFC46016.1| predicted protein [Naegleria gruberi]
Length = 536
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVK--RFGLNKNASIFHAELFALLQSLLTI 156
+Y S DGSK+E VG ++ I + K ++ L+ S AEL A+ +L I
Sbjct: 221 QYSYSEFTIWTDGSKSENKVGFSIIIQNNEFTKGYKYKLHSYHSNNMAELSAITTALHII 280
Query: 157 KQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE----LSSTESPVEFLWCPSHVGI 212
K L TDS ++ I N ++ K++++E +S+ + W +H GI
Sbjct: 281 PPNSNAKVL--TDSEIAVKIINNTNYKGQF-KQIKDEITNLISTKKLQASIEWTKAHTGI 337
Query: 213 A-GNETADEEAKQA 225
GN AD++AKQA
Sbjct: 338 TDGNNYADKKAKQA 351
>gi|322712751|gb|EFZ04324.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 345
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKR---FGLNKNASIFHAELFAL---LQSLLTIKQLGTC 162
IDG E + AL I + KR G + ++++ AEL L L+ L + C
Sbjct: 32 IDGHVGEAAISPALQI-DGVCAKRTECMGTSDISTVYSAELRGLALALKMALDVSLATHC 90
Query: 163 --KALIITDSLSCLQAIMNMFHENP---LVKRVQ--EELSSTESPVEFLWCPSHVGIAGN 215
K I TD+ + +QA+ N+ H + L + +Q +EL ++F W P+HVG+ GN
Sbjct: 91 AGKCTISTDNQAAIQAMRNLKHPSGQYILAEAIQALDELRGHGWDMQFRWIPAHVGVPGN 150
Query: 216 ETADEEAKQAINNDV------------IHNELFFDEVKIIIKKKYTEEWNTKW 256
E AD+ AK+A ++ H K I+K EW W
Sbjct: 151 EAADKAAKEAAGHNANSRQTAEPPPEPEHLRALMAPAKSAIRKTMKAEWKASW 203
>gi|328710861|ref|XP_003244383.1| PREDICTED: hypothetical protein LOC100570071 [Acyrthosiphon pisum]
Length = 90
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 204 LWCPSHVGIAGNETADEEAKQA--INNDVIHNELFFDEVKIIIKKKYTEEWNTKWV 257
+W P H I GNE AD+ AKQA NN + + +VK II + +W KWV
Sbjct: 1 MWIPGHCNIEGNELADKAAKQAHLANNPLTSPVFTYQDVKRIIAIEAQNQWENKWV 56
>gi|116214415|ref|XP_001230218.1| hypothetical protein CHGG_11048 [Chaetomium globosum CBS 148.51]
gi|88175403|gb|EAQ82872.1| hypothetical protein CHGG_11048 [Chaetomium globosum CBS 148.51]
Length = 943
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 624 VYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 683
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 684 TETWVPPLDL 693
>gi|294951625|ref|XP_002787074.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901664|gb|EER18870.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 370
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 110 DGSKNEQGVGCA-LTIPEKDIVKR--FGLNKNASIFHAELFALLQSL--LTIKQLGTCKA 164
DGSK G A L + E ++V+R F L + A+I EL A+ ++L L+ +
Sbjct: 83 DGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGIEW 142
Query: 165 LIITDSLSCLQAIMNM-FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
L+ TDS + ++ I E + R LS V+ WCP H G+ NE D+ A
Sbjct: 143 LLFTDSQASIRTIRGREATERSAIARDIAHLS-LHVKVQLNWCPGHEGVQWNEAVDQLA 200
>gi|154287938|ref|XP_001544764.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408405|gb|EDN03946.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 520
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 214 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 273
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 274 EAETHTVPLDI 284
>gi|154276432|ref|XP_001539061.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414134|gb|EDN09499.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 484
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 214 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 273
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 274 EAETHTVPLDI 284
>gi|400593545|gb|EJP61480.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 171
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 110 DGSKNEQGVGCALTIPEKDIV-----KRFGLNKNASIFHAELFAL---LQSLLTIKQLGT 161
DGS + GC + + D + + G + ++++ AEL L LQ +L + + G
Sbjct: 11 DGSGINRWCGCVCSGLQFDTISTKWIQYMGTSDVSTVYTAELRGLVLALQLVLNVHKTGD 70
Query: 162 --CKALIITDSLSCLQAIMNM---FHENPLVKRVQ--EELSSTESPVEFLWCPSHVGIAG 214
+ I TD+ + LQA+ N + L++ VQ +EL + ++F W P+HVG+ G
Sbjct: 71 NPGRCAIFTDNQAALQALQNPKCPSGQYILIEAVQALDELRRLKLSIQFRWIPAHVGVPG 130
Query: 215 N 215
N
Sbjct: 131 N 131
>gi|321472863|gb|EFX83832.1| hypothetical protein DAPPUDRAFT_100218 [Daphnia pulex]
Length = 554
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 110 DGS--KNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
DGS + + CA IP+K + + L + F+AEL+A+ Q+L + + +
Sbjct: 280 DGSVCETTKTASCAFHIPKKKEDEVWLLKNFTNSFNAELYAIRQALYHLNKYEMDSTIQP 339
Query: 168 TDSLSCLQAIMNM-FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
SL I N+ F + P S+ + + W PSH GI GNE AD+ A
Sbjct: 340 PSSL-----IQNLPFKQYPT--------SNGRTRITLTWIPSHAGIVGNEIADQLA 382
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 9 LIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRR 68
+IRS DYG + + L+ L QN LR G F+S+P L ETG + R
Sbjct: 105 MIRSAYDYGSTILTTIPKKRLEKLEQAQNQILRTIIGCFKSTPKALLNIETGIYPVKDRW 164
Query: 69 KILSSNYIAK 78
L+ NY +
Sbjct: 165 DQLAYNYFLR 174
>gi|116205820|ref|XP_001228719.1| hypothetical protein CHGG_02203 [Chaetomium globosum CBS 148.51]
gi|88182800|gb|EAQ90268.1| hypothetical protein CHGG_02203 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 36/132 (27%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ LE
Sbjct: 699 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRDLE 758
Query: 57 AETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTID---GSK 113
ET P LD+ Y+ K L+ +EN +P +D G K
Sbjct: 759 TETWVPPLDL--------YLNKRLA-----------------DFENRLQRPDLDDGQGGK 793
Query: 114 NEQGVGCALTIP 125
G AL+ P
Sbjct: 794 KTAGSRGALSSP 805
>gi|154269896|ref|XP_001535841.1| hypothetical protein HCAG_09226 [Ajellomyces capsulatus NAm1]
gi|150415667|gb|EDN11017.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 449
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 214 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 273
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 274 EAETHTVPLDI 284
>gi|322702767|gb|EFY94393.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 553
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 25/215 (11%)
Query: 32 LNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYIAKTLSIE-NHPNIMR 90
L+PV +R ++++PV E+G P + + + + A+ S++ HP R
Sbjct: 246 LDPVLRRAIRAILPVWKTTPVPIYHQESGIPPVPLLLEARRIRFAARLKSLDLAHPLAQR 305
Query: 91 TL-NPLYVRKYENSNMKPTI------------DGSK---NEQGVGCALTIPEKDIVKRFG 134
T P+ + + +PT+ DGS+ G G A+ I + G
Sbjct: 306 TAPTPIRTALFLSDCPRPTVEGISPDELVVYSDGSQLPGGATGYGYAVHQNSVTICEGSG 365
Query: 135 LNKNASIFHAELFALLQSL---LTIKQLGTCKALIITDSLS---CLQAIMNMFHENPLVK 188
A +F AE L+ L + I ++ D+L+ CL+ ++ +K
Sbjct: 366 RLGPAEVFDAEAAGALEGLRAAVKIPDASDNPIVVCLDNLAAATCLRGTALDSSQSAFLK 425
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+E+++ + W P H I GNE AD AK
Sbjct: 426 F--QEIAAAHGSIHVRWIPGHTDIPGNEQADSLAK 458
>gi|290975680|ref|XP_002670570.1| predicted protein [Naegleria gruberi]
gi|284084130|gb|EFC37826.1| predicted protein [Naegleria gruberi]
Length = 453
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 99 KYENSNMKPTIDGSKNEQGVGCALTIPEKDIVK--RFGLNKNASIFHAELFALLQSLLTI 156
+Y S DGSK+E VG ++ I + K ++ L+ S AEL A+ +L I
Sbjct: 138 QYSYSEFTIWTDGSKSENKVGFSVIIQNNEFTKGYKYKLHSYHSNNMAELSAITTALHII 197
Query: 157 KQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE----LSSTESPVEFLWCPSHVGI 212
A ++TDS ++ I N ++ K++++E +S+ + W +H GI
Sbjct: 198 PP--NSNAKVLTDSEIAVKIINNTNYKGQF-KQIKDEITNLISTKKLQASIEWTKAHTGI 254
Query: 213 A-GNETADEEAKQA 225
GN AD++AKQA
Sbjct: 255 TDGNNYADKKAKQA 268
>gi|19335965|emb|CAC38421.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + EK K L + + AEL A+L +L K+ I+
Sbjct: 1029 VDGAANRDTKLGKAGYVTEKGKQKIVKLEETTNQ-KAELMAVLLALQDSKET----VNIV 1083
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+PLV+++ EEL+ E V W P+H GI GNE D+
Sbjct: 1084 TDSQYVLGIISSQPTQSESPLVQQIIEELTQKEQ-VFLTWVPAHKGIGGNEKIDK 1137
>gi|353241646|emb|CCA73447.1| hypothetical protein PIIN_07401 [Piriformospora indica DSM 11827]
Length = 1244
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAI 226
+EF W P H G+ GNE ADEEAK+AI
Sbjct: 1046 IEFTWVPGHEGVQGNEAADEEAKKAI 1071
>gi|82294408|sp|Q82851.1|POL_JEMBR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr170Gag-Pol;
Contains: RecName: Full=Matrix protein p16; Short=MA;
Contains: RecName: Full=Capsid protein p26; Short=CA;
Contains: RecName: Full=Transframe peptide; AltName:
Full=p11; Contains: RecName: Full=Protease; AltName:
Full=P119; AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; AltName: Full=P72;
Contains: RecName: Full=Integrase; Short=IN
gi|733069|gb|AAA64389.1| gag-pol precursor [Jembrana disease virus]
gi|1581037|prf||2116345B gag-pol gene
Length = 1432
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN---MFHENPLVKRVQEELSSTES 199
AEL A+L +L Q G K IITDS + + + L K + EEL E
Sbjct: 997 QAELKAVLMAL----QDGPAKMNIITDSRYAFEGMREEPETWGREGLWKEIGEELRRKEY 1052
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAINNDV 230
V W P H GI GN D+E ++A+ +
Sbjct: 1053 -VGVSWVPGHKGIGGNTEVDQEVQKALQGPI 1082
>gi|154270051|ref|XP_001535895.1| hypothetical protein HCAG_09198 [Ajellomyces capsulatus NAm1]
gi|150412984|gb|EDN08368.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 841
Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 692 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 751
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 752 EAETHTVPLDI 762
>gi|116201885|ref|XP_001226754.1| hypothetical protein CHGG_08827 [Chaetomium globosum CBS 148.51]
gi|88177345|gb|EAQ84813.1| hypothetical protein CHGG_08827 [Chaetomium globosum CBS 148.51]
Length = 465
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 154 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 213
Query: 57 AETGEPNLDI 66
ET P+LD+
Sbjct: 214 TETWVPSLDL 223
>gi|134140582|gb|ABO61054.1| pol protein [Simian immunodeficiency virus]
Length = 1013
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 73 SNYIAKTLSIENHPNIMRTLNPLYVRKY-----ENSNMKPT--IDGSKNEQG-VGCALTI 124
++ A++ P I P +R++ E PT +DG+ N +G A +
Sbjct: 559 DHWWAESWQTTWVPEIEAVHTPHLLRQWFTLVPEPLEAAPTYYVDGAANRNSKLGRAGYV 618
Query: 125 PEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FH 182
++ K L +N + AEL A+L +L G K I+TDS L I
Sbjct: 619 TDRGQEKAIDL-ENTTNQKAELQAILMALTD----GPPKMNIVTDSQYALGIITAAPETS 673
Query: 183 ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKI 242
E+PLV+++ ++L + E+ + W P+H GI GN+ D + I LF + ++
Sbjct: 674 ESPLVEKIIQQLLTKEA-IYLSWVPAHKGIGGNQEVDHLVSKG-----IRQVLFMENIEP 727
Query: 243 IIK--KKYTEEW 252
I+ KY W
Sbjct: 728 AIEDHDKYHSNW 739
>gi|154282963|ref|XP_001542277.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410457|gb|EDN05845.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 956
Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 650 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 709
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 710 EAETHTVPLDI 720
>gi|427783937|gb|JAA57420.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQE------ELSSTESPVEFLWCPSHVGIAGNETAD 219
I DS + LQ++++ P + V E L+ + F W PSH GI GNE AD
Sbjct: 232 IFCDSKTALQSLLSTLRRGPHEQLVFETAEMLHHLTEKGHHITFQWLPSHCGIIGNERAD 291
Query: 220 EEAKQAINND 229
+ A+ A D
Sbjct: 292 QAARSAHTED 301
>gi|331240525|ref|XP_003332913.1| hypothetical protein PGTG_14072 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 339
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 110 DGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAE------LFAL-LQSLLTIKQLGT 161
DGS + ++G A P+K + L NA + + E L AL L S+LT + T
Sbjct: 72 DGSFHPDKGGAGAAVCPDKGVFSSLFLGGNAIVSNHESEAAGVLAALGLASVLT-EVTDT 130
Query: 162 CKALIITDSLSCLQAIMNMFHENP---LVKRVQEELSSTESP--VEFLWCPSHVGIAGNE 216
+ LI+ D+ L+ + + P L +++ + LS + V F WCP H I GNE
Sbjct: 131 RRILILVDNQGVLKRLNDPLAPKPGQKLFEQIHKGLSLLPAHLNVTFAWCPGHRDIMGNE 190
Query: 217 TADEEAKQAI 226
AD AK A+
Sbjct: 191 MADTLAKDAL 200
>gi|353244976|emb|CCA76093.1| hypothetical protein PIIN_10093 [Piriformospora indica DSM 11827]
Length = 1335
Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
+Y + + + Y PV+ + + L +QN CLR FR++P+ ++E E G P +
Sbjct: 836 LYTACVLPAITYATPVWWTGKRTHTKALEKIQNQCLRRILPVFRTTPISAMEVEAGIPPI 895
Query: 65 DIR 67
+R
Sbjct: 896 HLR 898
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
W P H GI GNE ADE AK A + + + K +E+W +W S +
Sbjct: 1150 WVPGHTGIPGNERADEIAKAACSLAPPNPRTTLSNYLRTARNKLSEDWTNQWT--STDRR 1207
Query: 265 KLRKIKNSILPSS 277
I + + PS+
Sbjct: 1208 SRYAIADRLPPST 1220
>gi|154275426|ref|XP_001538564.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415004|gb|EDN10366.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 965
Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 659 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 718
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 719 EAETHTVPLDI 729
>gi|126360750|gb|ABO09896.1| pol protein [Simian immunodeficiency virus]
Length = 661
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 73 SNYIAKTLSIENHPNIMRTLNPLYVRKY-----ENSNMKPT--IDGSKNEQG-VGCALTI 124
++ A++ P I P +R++ E PT +DG+ N +G A +
Sbjct: 319 DHWWAESWQTTWIPEIEAVHTPHLLRQWFTLVPEPLEAAPTYYVDGAANRTSKLGRAGYV 378
Query: 125 PEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FH 182
++ K L +N + AEL A+L +L G K I+TDS L I
Sbjct: 379 TDRGQEKAIDL-ENTTNQKAELQAILMALTD----GPPKMNIVTDSQYALGIITTAPETS 433
Query: 183 ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKI 242
E+PLV+++ ++L + E+ + W P+H GI GN+ D + I LF + ++
Sbjct: 434 ESPLVEKIIQQLLTKEA-IYLSWVPAHKGIGGNQEVDHLVSKGIR-----QVLFMENIEP 487
Query: 243 IIK--KKYTEEW 252
I+ KY W
Sbjct: 488 AIEDHDKYHSNW 499
>gi|154270414|ref|XP_001536062.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409989|gb|EDN05377.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 954
Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 717 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 776
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 777 EAETHTVPLDI 787
>gi|71024129|ref|XP_762294.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
gi|46101799|gb|EAK87032.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
Length = 345
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 134 GLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE 193
+ ++++ AEL A+ ++L + A I D+ + + I ++P + +Q+
Sbjct: 88 AIGSGSTVYRAELLAIRKALE--HGIANAGATIFCDNRAAVIHIDARPSDDPDISAIQQM 145
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDE--VKIIIKKKYTEE 251
S V +W P H I GNE AD A+ A ++ + + +E V+ + ++ +
Sbjct: 146 SSGRR--VTVVWIPGHRDIPGNERADTLAQGAADDAIGFPADYREEAAVRHALLRRTMQA 203
Query: 252 WNTKWVNISPNENKLRKI 269
W W + +P ++L+ I
Sbjct: 204 WTKAWES-TPRGSELKAI 220
>gi|154270790|ref|XP_001536249.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409823|gb|EDN05263.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1307
Score = 44.3 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1170 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1229
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1230 EAETHTVPLDI 1240
>gi|154277106|ref|XP_001539398.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414471|gb|EDN09836.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1315
Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1009 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1068
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1069 EAETHTVPLDI 1079
>gi|154277386|ref|XP_001539534.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413119|gb|EDN08502.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1390
Score = 44.3 bits (103), Expect = 0.057, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1084 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1143
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1144 EAETHTVPLDI 1154
>gi|384496077|gb|EIE86568.1| hypothetical protein RO3G_11279 [Rhizopus delemar RA 99-880]
Length = 708
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y S +R KL+YG + + + + LN VQ+ CLR+ G R+S V L P+
Sbjct: 431 RLYASFVRPKLEYGLAIAHLLKKDYTE-LNRVQDRCLRMIVGGHRTSSTVVLRHICNLPS 489
Query: 64 LDIRRKILSSNYIAKT 79
+D R L Y +
Sbjct: 490 MDFRADTLVLKYCLRV 505
>gi|154278826|ref|XP_001540226.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412169|gb|EDN07556.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1356
Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1050 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1109
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1110 EAETHTVPLDI 1120
>gi|427778047|gb|JAA54475.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 168
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF-RSSPVVSLEAETGEPN 63
+YK+L+RSKL+ V++ N + L VQN +R + R + + S+++ G P+
Sbjct: 20 LYKTLVRSKLEXASSVWDPYHDNLIASLELVQNNSVRFMLSNYNRIASITSMKSNLGLPS 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMR--TLNPLYV 97
L RRKI + +A I +HP + LNP Y+
Sbjct: 80 LASRRKI---SRLATFHKIFHHPALHHQLILNPQYI 112
>gi|154281441|ref|XP_001541533.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411712|gb|EDN07100.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1329
Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1023 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1082
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1083 EAETHTVPLDI 1093
>gi|154284902|ref|XP_001543246.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406887|gb|EDN02428.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1390
Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1084 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1143
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1144 EAETHTVPLDI 1154
>gi|380490755|emb|CCF35795.1| reverse transcriptase [Colletotrichum higginsianum]
Length = 906
Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVK-RFGLNKNASIFHAELFALLQSLLTIKQLGTCK---- 163
+DGS+ G G + I + L +F AE A + LL + T +
Sbjct: 619 VDGSRTAAGAGWVGYQATRQIFRGSEPLGHQTEVFDAEAQAAFRGLLEAMRSPTARMADN 678
Query: 164 -----------ALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP--VEFLWCPSHV 210
A ++T S QA F E V Q +S P V WCP H
Sbjct: 679 VHICLDNLAVTARLVTRSPGSSQARFRAFSELS-VSWAQRGRTSWTRPGRVYIWWCPGHT 737
Query: 211 GIAGNETADEEAKQA 225
GIAGNE AD AK+A
Sbjct: 738 GIAGNEEADALAKEA 752
>gi|154272365|ref|XP_001537035.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409022|gb|EDN04478.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1331
Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1025 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1084
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1085 EAETHTVPLDI 1095
>gi|429854941|gb|ELA29922.1| hypothetical protein CGGC5_1108 [Colletotrichum gloeosporioides
Nara gc5]
Length = 336
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 144 AELFALLQSLLTIKQLGTC-----KALIITDSLSCLQAIM--NMFHENPLVKRV---QEE 193
AEL+AL L T L + I TD ++++M + ++PLV+R +
Sbjct: 108 AELYALALGLETALYLSRAVPDLRQVNIFTDCKDAIRSLMRADASDDDPLVQRAVAASAK 167
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAK 223
L + WCP HVG+ GNE AD+ AK
Sbjct: 168 LEAKGVRTAVRWCPGHVGVEGNERADQLAK 197
>gi|390362351|ref|XP_795584.2| PREDICTED: probable thiopurine S-methyltransferase-like
[Strongylocentrotus purpuratus]
Length = 219
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF--------RSSPVVSLE 56
+Y+++IRS DYGC Y+SA++ + + ++ VQ LR+ G R +V +E
Sbjct: 2 VYRAIIRSLFDYGCEAYDSAAATTKKAIDSVQYQALRICAGMVIFCPRLWERGHEIVGVE 61
Query: 57 A 57
A
Sbjct: 62 A 62
>gi|154274436|ref|XP_001538069.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414509|gb|EDN09871.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1553
Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 1334 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1393
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1394 EAETHTVPLDI 1404
>gi|392588053|gb|EIW77386.1| hypothetical protein CONPUDRAFT_62761, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 119
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 123 TIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH 182
T+ E ++V G+ A++ HAEL ++ GT A + D+ + ++A+ N
Sbjct: 8 TVYEAELV---GILLGATLLHAEL---------TRRSGT--ASLGVDNQAAIRALTNR-D 52
Query: 183 ENPLVKRVQEELSST------ESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
+P V +S+ + P+ W P HVGI GNETADE AK+A
Sbjct: 53 THPGQYLVDAAVSAITAVPTIDHPICIRWTPGHVGIQGNETADEHAKRAAQG 104
>gi|384484837|gb|EIE77017.1| hypothetical protein RO3G_01721 [Rhizopus delemar RA 99-880]
Length = 340
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y S +R KL+YG + + + + LN VQ+ CLR+ G R+S V L P+
Sbjct: 63 RLYASFVRPKLEYGLVIAHLLKKDYTE-LNRVQDRCLRMIVGGHRTSSTVVLRHICNLPS 121
Query: 64 LDIRRKILSSNYIAKT 79
+D R L Y +
Sbjct: 122 MDFRADTLVLKYCLRV 137
>gi|154269581|ref|XP_001535756.1| hypothetical protein HCAG_09327 [Ajellomyces capsulatus NAm1]
gi|150411173|gb|EDN06561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 181 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLATVQNSCLRIVAGAYKRTPTSTL 240
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 241 EAETHTVPLDI 251
>gi|407915263|gb|EKG08960.1| hypothetical protein MPH_14085 [Macrophomina phaseolina MS6]
Length = 454
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAIN 227
PVE WCP H+GI GNE AD+ AK AI
Sbjct: 274 PVETRWCPGHMGITGNEEADQLAKAAIG 301
>gi|156052453|ref|XP_001592153.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980]
gi|154704172|gb|EDO03911.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 852
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 523 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 582
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 583 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 642
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A I NE F + + +K+ +++W
Sbjct: 643 LADKLAKEATTIQPISNETSFGLLGMTVKEYASDQW 678
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 341 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 399
>gi|126360752|gb|ABO09897.1| pol protein [Simian immunodeficiency virus]
Length = 655
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 73 SNYIAKTLSIENHPNIMRTLNPLYVRKY-----ENSNMKPT--IDGSKNEQG-VGCALTI 124
++ A++ P I P +R++ E PT +DG+ N +G A +
Sbjct: 314 DHWWAESWQTTWIPEIEAVHTPHLLRQWFTLVPEPLEAAPTYYVDGAANRNSKLGRAGYV 373
Query: 125 PEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FH 182
++ K L +N + AEL A+L +L G K I+TDS L I
Sbjct: 374 TDRGQEKAIDL-ENTTNQKAELQAILMALTD----GPPKMNIVTDSQYALGIITAAPETS 428
Query: 183 ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKI 242
E+PLV+++ ++L + E+ + W P+H GI GN+ D + I LF + ++
Sbjct: 429 ESPLVEKIIQQLLTKEA-IYLSWVPAHKGIGGNQEVDHLVSKGIR-----QVLFMENIEP 482
Query: 243 IIK--KKYTEEW 252
I+ KY W
Sbjct: 483 AIEDHDKYHSNW 494
>gi|342867783|gb|EGU72563.1| hypothetical protein FOXB_16927 [Fusarium oxysporum Fo5176]
Length = 1790
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKR--FGLNKNASIFHAELFALLQSLLTIKQLGT-----C 162
DGS+ VG A + K G + ++++ EL + +L +Q
Sbjct: 1493 DGSRINGHVGSAAVCTTTNQAKSAYMGEDTVSTVYAGELQGVSLALQIAQQDRDQGNVRT 1552
Query: 163 KALIITDSLSCLQAIM------NMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNE 216
K +I TD+ + ++++ + + +R+Q L + PVE W P+H GI GNE
Sbjct: 1553 KVMIYTDNQAAIRSVARPRGKSGSYLLQDITQRIQT-LRAQGLPVEVRWIPAHKGIYGNE 1611
Query: 217 TADEEAKQAIN 227
AD AK+A
Sbjct: 1612 AADRAAKEATG 1622
>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1463
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 26/170 (15%)
Query: 75 YIAKTLSIENHPNIM--RTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKR 132
+++KT +I + +I+ + NP + + + + P E+G A P + +
Sbjct: 1132 HLSKTAAITSVKSIISCHSTNPRSLLIFSDGSFHP-------EKGGAGAAICPSERVFSS 1184
Query: 133 FGLNKNASI--FHAELFALLQSLLTIKQLGTCKAL------IITDSLSCLQAIMNMFHEN 184
+ L N SI +E +L +L L C L I D+ + N
Sbjct: 1185 YNLGGNTSISNHESEAAGVLAALELANHL--CSTLDRSNIMIFMDNQGVISRTKNPRSPK 1242
Query: 185 PLVKRVQEELSSTES------PVEFLWCPSHVGIAGNETADEEAKQAINN 228
P + + E++ S+ S + F+WCP HV I GNE AD+ A++A+ +
Sbjct: 1243 P-GQWIFEKIDSSISLLPEGLGISFVWCPGHVNIPGNEMADQLAREALES 1291
>gi|427778049|gb|JAA54476.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 168
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF-RSSPVVSLEAETGEPN 63
+YK+L+RSKL+ V++ N + L VQN +R + R + + S+++ G P+
Sbjct: 20 LYKTLVRSKLEXASSVWDPYHDNLIASLELVQNNSVRFILSNYNRIASITSMKSNLGLPS 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMR--TLNPLYV 97
L RRKI + +A I +HP + LNP Y+
Sbjct: 80 LASRRKI---SRLATFHKIFHHPALHHQLILNPQYI 112
>gi|116194694|ref|XP_001223159.1| hypothetical protein CHGG_03945 [Chaetomium globosum CBS 148.51]
gi|88179858|gb|EAQ87326.1| hypothetical protein CHGG_03945 [Chaetomium globosum CBS 148.51]
Length = 411
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 100 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPICNLE 159
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 160 TETWVPPLDL 169
>gi|407802244|ref|ZP_11149086.1| RNase H [Alcanivorax sp. W11-5]
gi|407023919|gb|EKE35664.1| RNase H [Alcanivorax sp. W11-5]
Length = 152
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH----------------ENPLVK 188
EL A+++ L +KQ C+ ++ TDS L+ I H L +
Sbjct: 47 ELTAVIKGLEALKQ--PCQVVLYTDSKYVLEGITKWIHGWKRNGWRTASKSPVKNGELWQ 104
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
R+ + ++ +E+ W H G AGNE AD+ A Q I+
Sbjct: 105 RLDQ--AAARHSIEWRWVKGHSGDAGNERADQLANQGID 141
>gi|37728002|gb|AAR02368.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 14/115 (12%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPV 201
AEL A+L L +K+ G + ++TDS L + + E+ PLV+++ +EL S E+ +
Sbjct: 633 AELEAVL---LALKE-GPPRMNLVTDSQYVLGIVASQPQESTSPLVEQIIQELLSKEA-I 687
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
W P+H GI GNE D+ + N I LF ++++ K+ E++++ W
Sbjct: 688 YLSWVPAHKGIGGNEEVDK-----LVNSGIRQVLFMEQIE--PAKEDHEKYHSNW 735
>gi|116205996|ref|XP_001228807.1| hypothetical protein CHGG_02291 [Chaetomium globosum CBS 148.51]
gi|88182888|gb|EAQ90356.1| hypothetical protein CHGG_02291 [Chaetomium globosum CBS 148.51]
Length = 1154
Score = 43.9 bits (102), Expect = 0.078, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 843 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 902
Query: 57 AETGEPNLDIRRK 69
ET P LD+ K
Sbjct: 903 TETWVPPLDLYLK 915
>gi|37935861|gb|AAO47112.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.9 bits (102), Expect = 0.079, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L +L K+ K I+TDS L I + ++P+V+++ EEL+ E V
Sbjct: 628 AELMAVLLALQDSKE----KVNIVTDSQYVLGIISSQPTQSDSPIVQQIIEELTKKEQ-V 682
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ + I
Sbjct: 683 YLTWVPAHKGIGGNEKIDKLVSKDI 707
>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 163 KALIITDSLSCLQAIMNMFHENPLV----KRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
+A+I DS + +QAI + +EL + V W P+H GI GNE A
Sbjct: 13 EAIIFCDSQAAIQAIDGTQKTGQQILGSIAEKWDELRNQGVQVSIHWIPTHQGIEGNERA 72
Query: 219 DEEAKQAINNDVIHN-------ELFFDEVKIIIKKKYTEEWN 253
D AK+A +I N ++K + K++ +EW
Sbjct: 73 DRAAKEATGWRLIRNIGLQQPLSALKRDLKTLAYKQWEQEWQ 114
>gi|37935941|gb|AAO47182.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 43.9 bits (102), Expect = 0.084, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG ++ IVK + + AEL A+L +L
Sbjct: 594 YVDGAANRNTKLGKAGYVTEQG--------KQKIVKL----EETTNQKAELMAILLALQD 641
Query: 156 IKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ I+TDS L I + ++PLV+++ EEL+ E V W P+H GI
Sbjct: 642 SKE----TVNIVTDSQYALGIISSQPTQSDSPLVQQIIEELTKKEQ-VYLAWVPAHKGIG 696
Query: 214 GNETADEEAKQAI 226
GNE D+ + I
Sbjct: 697 GNEKIDKLVSKDI 709
>gi|427779633|gb|JAA55268.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 534
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 166 IITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I +DS + LQ IM+ F P ++ + + + + W P H GI GN+ AD
Sbjct: 306 IFSDSKAALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHCGIYGNDRAD 365
Query: 220 EEAKQAINNDVIH 232
E A+ A +D +H
Sbjct: 366 EAARSA--HDALH 376
>gi|116205405|ref|XP_001228513.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
gi|88176714|gb|EAQ84182.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
Length = 1437
Score = 43.5 bits (101), Expect = 0.10, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 1227 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 1286
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 1287 TETWVPPLDL 1296
>gi|37935951|gb|AAO47191.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + E+ K L + + AEL A+L +L K+ K I+
Sbjct: 595 VDGAANRETKLGKAGYVTEQGKQKIINLEETTNQ-KAELMAVLIALQDSKE----KVNIV 649
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + ++P+V+++ EEL+ E W P+H GI GNE D+
Sbjct: 650 TDSQYVLGIISSQPTQSDSPIVQQIIEELTKKEQ-TYITWVPAHKGIGGNEKIDK 703
>gi|270016915|gb|EFA13361.1| hypothetical protein TcasGA2_TC002231 [Tribolium castaneum]
Length = 531
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 3 IRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+ +YK++ R L Y PV+ S + + L QN CLRLA R + +V L+ +
Sbjct: 434 VLMYKTIFRPILTYAAPVWCHLSDTAFKPLEVFQNKCLRLALNESRYARIVDLQERSATT 493
Query: 63 NLDIRRKILSSNYIAKTLSI 82
+L LS+N+ + L+
Sbjct: 494 SLRAFVNKLSNNFYSHQLNF 513
>gi|312844572|gb|ADR03144.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 43.5 bits (101), Expect = 0.10, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + + AEL A+L L +K+ G +A I+
Sbjct: 594 VDGAANRETKLGKAGYVTDRGRQKIIKLEETTNQ-KAELEAVL---LALKESGE-QANIV 648
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I ++PLV+++ EE++ E V W P+H GI GNE D+ +
Sbjct: 649 TDSQYVLGIISATPDQSDSPLVQKIIEEMTKKEK-VYLSWVPAHKGIGGNENIDKLVSKD 707
Query: 226 I 226
I
Sbjct: 708 I 708
>gi|71018711|ref|XP_759586.1| hypothetical protein UM03439.1 [Ustilago maydis 521]
gi|46099344|gb|EAK84577.1| predicted protein [Ustilago maydis 521]
Length = 183
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 184 NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDE---V 240
+P + VQ+ + V +W H GI GNE AD A+ A +DVI E V
Sbjct: 54 DPDISTVQQ--FAVAKHVAVVWVTGHCGILGNERADSLAQNAA-DDVIRESAEHHEEAVV 110
Query: 241 KIIIKKKYTEEWNTKWVNISPNENKLR 267
++ I+++ + WN W N SP + R
Sbjct: 111 QLAIRRRVMQAWNQAW-NSSPKGSNFR 136
>gi|116207482|ref|XP_001229550.1| hypothetical protein CHGG_03034 [Chaetomium globosum CBS 148.51]
gi|88183631|gb|EAQ91099.1| hypothetical protein CHGG_03034 [Chaetomium globosum CBS 148.51]
Length = 1457
Score = 43.5 bits (101), Expect = 0.11, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 1302 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 1361
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 1362 TETWVPPLDL 1371
>gi|256252547|dbj|BAH97659.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 43.5 bits (101), Expect = 0.11, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQK------------AELMAVLIALQD 639
Query: 156 IKQLGTCKALIITDSLSCLQAI--MNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ I+TDS L I ++P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----AVNIVTDSQYVLGIISAQPTQSDSPIVQQIIEELTKKEQ-VYLTWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ Q I
Sbjct: 695 GNEKIDKLVSQDI 707
>gi|116207974|ref|XP_001229796.1| hypothetical protein CHGG_03280 [Chaetomium globosum CBS 148.51]
gi|88183877|gb|EAQ91345.1| hypothetical protein CHGG_03280 [Chaetomium globosum CBS 148.51]
Length = 683
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 427 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 486
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 487 TETWVPPLDL 496
>gi|116197136|ref|XP_001224380.1| hypothetical protein CHGG_05166 [Chaetomium globosum CBS 148.51]
gi|88181079|gb|EAQ88547.1| hypothetical protein CHGG_05166 [Chaetomium globosum CBS 148.51]
Length = 564
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 253 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 312
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 313 TETWIPPLDL 322
>gi|154287168|ref|XP_001544379.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408020|gb|EDN03561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 520
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNS--------LQI-LNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ L + L VQN CLR+ GA++ +P +L
Sbjct: 214 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKPGLALKLTTVQNSCLRIVAGAYKRTPTSTL 273
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 274 EAETHTVPLDI 284
>gi|270004666|gb|EFA01114.1| hypothetical protein TcasGA2_TC010326 [Tribolium castaneum]
Length = 366
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 3 IRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+ +YK++IR L Y P++ S + + L QN CLRLA R + +V L+ +
Sbjct: 254 VLMYKTIIRPILTYAAPIWCHLSDTAFKPLEVFQNKCLRLALNESRYARIVDLQERSATT 313
Query: 63 NLDIRRKILSSNYIAKTL 80
+L LS+N+ + L
Sbjct: 314 SLRAFVNKLSNNFYSHQL 331
>gi|407920660|gb|EKG13846.1| hypothetical protein MPH_08978 [Macrophomina phaseolina MS6]
Length = 606
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 110 DGSKNEQGVGCALTIPEKDI--VKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA--- 164
DGS + VG A T P + G K+ ++F AEL + +L + +
Sbjct: 303 DGSALDGHVGGAATAPTINARHTNYMGTIKSTTVFAAELRGIEMALDLAEAEAAHRKRRI 362
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEELSSTESP---VEFLWCPSHVGIAGNETAD 219
+ TD+ + L+A++ ++ L++ + +L + +EF W PSH G+ GNE AD
Sbjct: 363 AVFTDNQAALRALVTPSEQSGQYLLRSIIAKLIGLQQQGVLIEFHWVPSHQGVPGNEEAD 422
Query: 220 EEAKQAI-------NNDVIHNEL-FFDEVKIIIKKKYTEEWNTKW 256
AK A + +H +K I + +EW W
Sbjct: 423 RLAKAAALEGRASEHGTQLHARTSLVAALKQTISQAEMDEWKQLW 467
>gi|242825403|ref|XP_002488433.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712251|gb|EED11677.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 458
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 23/156 (14%)
Query: 135 LNKNASIFHAELFALLQSL---LTIKQLGTCKALIITDSLSCLQAIMNMFHENP-----L 186
+ +F AEL + +L L + LG L L AI + P L
Sbjct: 170 MGHGHEVFDAELVGVATALEWALERQPLGPIWVL-----LDAQNAIDRLRSTRPGPGQAL 224
Query: 187 VKRVQ---EELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII 243
V R E+L+ PV W P H GI GNE AD+ AK+A + F+ + +
Sbjct: 225 VLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPG---FEYLSLA 281
Query: 244 -IKKKYTEEWN---TKWVNISPNENKLRKIKNSILP 275
+++ YTE ++W I+ + + R + ++ P
Sbjct: 282 HVRRAYTEARRAAVSEWARINAVQGRHRDGRWNLDP 317
>gi|357611795|gb|EHJ67653.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 387
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 95 LYVRKYENSNMKPTIDGSKNEQG-VGCAL----TIPEKDIVKRFGLNKNASIFHAELFAL 149
L+ R+ DGSK E G VG A TIP F AEL A+
Sbjct: 107 LHQRRAHPKTTHTFTDGSKLEDGTVGAAFVSYDTIPSVKSSS---STTVVLFFQAELLAI 163
Query: 150 LQSLLTIKQLGT---CKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
L L L T +A I+ +Q N H LV ++ + + +EF W
Sbjct: 164 LN--LANGSLPTNIHPRAAILA-----IQKRSNTHH---LVPKIHSTVHHSSGSIEFAWV 213
Query: 207 PSHVGIAGNETADEEAKQ 224
+HVGI GNE A+ AK+
Sbjct: 214 KAHVGIVGNEAANTAAKR 231
>gi|256252557|dbj|BAH97668.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQK------------AELMAVLIALQD 639
Query: 156 IKQLGTCKALIITDSLSCLQAI--MNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ I+TDS L I ++P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----AVNIVTDSQYVLGIISAQPTQSDSPIVQQIIEELTKKEQ-VYLTWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ Q I
Sbjct: 695 GNEKIDKLVSQDI 707
>gi|469241|gb|AAA44860.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1033
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 95 LYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLL 154
YV N N K G EQG +++I+K + + AEL A+L +L
Sbjct: 615 FYVDGAANRNTKLGKAGYVTEQG--------KQNIIKL----EETTNQKAELMAVLIALQ 662
Query: 155 TIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGI 212
K+ + I+TDS L I + ++P+V+++ EEL+ E V W P+H GI
Sbjct: 663 DSKE----QVNIVTDSQYVLGIISSQPTQSDSPIVQQIIEELTKKER-VYLTWVPAHKGI 717
Query: 213 AGNETADEEAKQAI 226
GNE D+ + I
Sbjct: 718 GGNEKIDKLVSKDI 731
>gi|407915369|gb|EKG09000.1| hypothetical protein MPH_14030 [Macrophomina phaseolina MS6]
Length = 606
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 131 KRFGLNKNASIFHAELFALLQSLLTI---KQLGTCKALIITDSLSCLQAIMNMFHENP-- 185
K G K+ ++F AEL ++ +L G K I TD+ + L+A++ ++
Sbjct: 326 KYMGTVKSTTVFAAELQGIIMALELAGVETAHGKQKIAIFTDNQAALRALVTPGQQSGQC 385
Query: 186 LVKRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAK------QAINNDVIHNEL- 235
L+ + EL+ + V+F W P+H G+ GNE AD AK +A+ + N
Sbjct: 386 LLSCIITELTGLQQKGVSVDFHWIPAHQGVPGNEEADRLAKVVAREGRALEHRTQLNTRT 445
Query: 236 -FFDEVKIIIKKKYTEEWNTKW 256
+K I + +EW W
Sbjct: 446 SLVAALKQAINQAVMDEWKQTW 467
>gi|353257212|gb|AEQ75932.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K + +N + AEL A+L +L Q +A I+
Sbjct: 604 VDGAANRETKLGKAGFVTDRGRQKVISI-ENTTNQKAELQAILMAL----QESGREANIV 658
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q M + H P LV ++ EEL E V W P+H GI GNE D+
Sbjct: 659 TDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKL 713
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 714 VSSG-----IRKVLFLDGID--KAQEDHERYHSNWRAMASDFN 749
>gi|270004479|gb|EFA00927.1| hypothetical protein TcasGA2_TC003833 [Tribolium castaneum]
Length = 416
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 3 IRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+ +YK++ R L Y PV+ S + + L QN CLRLA R + +V L+ +
Sbjct: 304 VLMYKTIFRPILTYAAPVWCHLSDTAFKPLEVFQNKCLRLALNESRYARIVDLQERSATT 363
Query: 63 NLDIRRKILSSNYIAKTLSI 82
+L LS+N+ + L
Sbjct: 364 SLRAFVNKLSNNFYSHQLKF 383
>gi|427798873|gb|JAA64888.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1158
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D S+ E+ G + + D L IF AE A++ +L + I+TD
Sbjct: 932 DASQCEEKAGVGIFSSQLDWSFSVRLPDYTQIFLAEFLAVILALRKLP-FSITSVAIVTD 990
Query: 170 SLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229
SLS A++ E+ +++ ++ + + +W P H GI NE AD AK ++
Sbjct: 991 SLSLCSALITP-TESHILRLLRLLVPHHLRNLRLIWVPGHRGIVLNEVADTLAKASLAGP 1049
Query: 230 VI 231
V+
Sbjct: 1050 VL 1051
>gi|270017217|gb|EFA13663.1| hypothetical protein TcasGA2_TC004352 [Tribolium castaneum]
Length = 324
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 3 IRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+ +YK++ R L Y PV+ S + + L QN CLRLA R + +V L+ +
Sbjct: 212 VLMYKTIFRPILTYAAPVWCHLSDTAFKPLEVFQNKCLRLALNESRYARIVDLQERSATT 271
Query: 63 NLDIRRKILSSNYIAKTLSI 82
+L LS+N+ + L+
Sbjct: 272 SLRAFVNKLSNNFYSHQLNF 291
>gi|449689578|ref|XP_004212073.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like, partial [Hydra magnipapillata]
Length = 712
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLD 65
Y LIRS+L+Y +Y S L+ L+ +Q C+R+ R++ L E L
Sbjct: 608 YTGLIRSQLEYASILYLGQSKAQLKRLDVIQKQCVRIVCHKPRNTHSAPLLEELKLDTLG 667
Query: 66 IRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQG 117
RRK+ ++ + LS HP++ + E+SN+ + + N QG
Sbjct: 668 ERRKVHATKIVMSALSGVCHPSLANMF-----KMNEDSNL--IVKKAANRQG 712
>gi|348560|pir||S30484 pol polyprotein - human immunodeficiency virus type 2
Length = 656
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 109 IDGSKNEQG-VGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DGS + Q VG A + ++D K L + + AEL A L +L Q KA I+
Sbjct: 454 VDGSCHRQSKVGKAGYVTDRDREKTKALQQTTNQ-QAELEAFLLAL----QDSGPKANIV 508
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
DS Q +M + P LV ++ EE+ E+ + W P+H GI GN+ D
Sbjct: 509 VDS----QYVMGIVAGQPTESESKLVNQIIEEMIKKEA-IYIAWVPAHKGIGGNQEVDHL 563
Query: 222 AKQAINN 228
Q I
Sbjct: 564 VSQGIRQ 570
>gi|116192701|ref|XP_001222163.1| hypothetical protein CHGG_06068 [Chaetomium globosum CBS 148.51]
gi|88181981|gb|EAQ89449.1| hypothetical protein CHGG_06068 [Chaetomium globosum CBS 148.51]
Length = 285
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + + L QN LR+ GAF+ +P+ +LE
Sbjct: 161 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGTTKALGKAQNKSLRIVAGAFKHTPIRNLE 220
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 221 TETWVPPLDL 230
>gi|116191631|ref|XP_001221628.1| hypothetical protein CHGG_05533 [Chaetomium globosum CBS 148.51]
gi|88181446|gb|EAQ88914.1| hypothetical protein CHGG_05533 [Chaetomium globosum CBS 148.51]
Length = 337
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ L VQN LR+ GAF+++P+ +LE
Sbjct: 26 VYTKCIRSALAYGASSFHIPTDVEGEPVKKGITGALGKVQNKSLRIVAGAFKATPIRNLE 85
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 86 TETWVPPLDL 95
>gi|409180209|gb|AFV26221.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats.
Identities = 46/127 (36%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q VG A I + KD VK N AEL A L +L Q KA
Sbjct: 604 VDGSCNRQSKVGKAGYITDRGKDKVKILEQTTNQ---QAELEAFLMAL----QDSGPKAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
II DS Q +M + EN LV ++ EE+ E + W P+H GI GN+ D
Sbjct: 657 IIVDS----QYVMGIVTGCPTESENRLVNQIIEEMIKKEG-IYVAWVPAHKGIGGNQEID 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|322702355|gb|EFY94018.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 639
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 163 KALIITDSLSCLQAIMNMFHEN------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNE 216
K LI TD+ + ++++ E+ + +R+QE L + VE W P+H GI GNE
Sbjct: 417 KVLIYTDNQAAVRSVARPRGESGSYLLQDITRRMQE-LQAQGLTVEDRWIPAHTGIHGNE 475
Query: 217 TADEEAKQAIN 227
AD+ AK A
Sbjct: 476 AADQAAKNATG 486
>gi|116206804|ref|XP_001229211.1| hypothetical protein CHGG_02695 [Chaetomium globosum CBS 148.51]
gi|88183292|gb|EAQ90760.1| hypothetical protein CHGG_02695 [Chaetomium globosum CBS 148.51]
Length = 1376
Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVY--------NSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG + A + L QN LR+ GAF+S+P+ +LE
Sbjct: 1136 VYTKCIRSALAYGASSFYIPTDVGGEPAKKGITKTLGKAQNKSLRIVAGAFKSTPIRNLE 1195
Query: 57 AETGEPNLDI 66
E P LD+
Sbjct: 1196 TEAWVPPLDL 1205
>gi|116206210|ref|XP_001228914.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
gi|88182995|gb|EAQ90463.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
Length = 1620
Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 1209 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 1268
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 1269 TETWVPPLDL 1278
>gi|342318905|gb|EGU10861.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]
Length = 2277
Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 134 GLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPL------- 186
G+ ++ +++ EL +L +L ++Q + ++ S+ A+ + P
Sbjct: 1940 GMGQHQTVYAGELQGILLALKAVQQTADAPSHVLL-SVDNTSALTHSTDPAPTPGQYLRL 1998
Query: 187 -VKRVQEELSST-ESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+++ EEL T S + W P HVG+ GNE AD AK+A+
Sbjct: 1999 AIRKALEELERTCVSTIHLSWLPGHVGVVGNEVADLAAKEAV 2040
>gi|116180986|ref|XP_001220342.1| hypothetical protein CHGG_01121 [Chaetomium globosum CBS 148.51]
gi|88185418|gb|EAQ92886.1| hypothetical protein CHGG_01121 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 124 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 183
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 184 TETWVPPLDL 193
>gi|427781821|gb|JAA56362.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1134
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169
D S+ E+ G + + D L IF AE A++ +L + I+TD
Sbjct: 852 DASQCEEKAGVGIFSSQLDWSFSVRLPDYTQIFLAEFLAVILALRKLP-FSITSVAIVTD 910
Query: 170 SLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229
SLS A++ E+ +++ ++ + + +W P H GI NE AD AK ++
Sbjct: 911 SLSLCSALITP-TESHILRLLRLLVPHHLRNLRLIWVPGHRGIVLNEVADTLAKASLAGP 969
Query: 230 VI 231
V+
Sbjct: 970 VL 971
>gi|116200500|ref|XP_001226062.1| hypothetical protein CHGG_10795 [Chaetomium globosum CBS 148.51]
gi|88175509|gb|EAQ82977.1| hypothetical protein CHGG_10795 [Chaetomium globosum CBS 148.51]
Length = 298
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ L VQN LR+ GAF+++P+ +LE
Sbjct: 120 VYTKCIRSALAYGASSFHIPADVEGEPVKKGITGALGKVQNKSLRIVAGAFKATPIRNLE 179
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 180 TETWVPPLDL 189
>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L +L K+ + I+TDS L I + ++P+V+++ EEL+ E V
Sbjct: 629 AELMAILLALQDSKE----QVNIVTDSQYALGIISSQPTQSDSPIVQQIIEELTKKEQ-V 683
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ + I
Sbjct: 684 YLTWVPAHKGIGGNEKIDKLVSKDI 708
>gi|37935908|gb|AAP42148.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 109 IDGSKNEQ-GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N+ +G A + E+ K L + + AEL A+L +L K+ I+
Sbjct: 593 VDGAANKNTKLGKAGYVTEQGKQKIIKLEETTNQ-KAELMAVLLALQDSKEX----VNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + E+P+V+++ EEL+ E V W P+H GI GNE D+
Sbjct: 648 TDSQYALGIISSQPTQSESPIVQQIIEELTRKER-VYLAWVPAHKGIGGNEKIDK 701
>gi|307176190|gb|EFN65847.1| hypothetical protein EAG_02388 [Camponotus floridanus]
Length = 220
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 23/131 (17%)
Query: 140 SIFHAELFAL------LQSLLTIKQLGTCKALIITDSLSCLQAIMN----MFHENPLVKR 189
S F AE FA+ LQ + K+ +I +D L+A+ N ++H N +
Sbjct: 1 STFTAEAFAIRTALEILQGSYSKKEYNHENVIIFSDCQGVLKALKNNKLSVYH-NRYIME 59
Query: 190 VQEE----LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN---NDVIHNELFFDEVKI 242
+E ++ + +W PSH G GNE AD AKQ + +D IH + F ++
Sbjct: 60 ARELYWKIVTQFRIKIYLIWIPSHKGFIGNEIADILAKQGASERADDSIH--VPFQDLTS 117
Query: 243 IIKKKYTEEWN 253
+ K EEWN
Sbjct: 118 VFK---NEEWN 125
>gi|154271554|ref|XP_001536630.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409300|gb|EDN04750.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1163
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L +G ++ A S L VQN CLR+ GA++ +P +L
Sbjct: 973 VYNMVIRPALTFGAIAWHQPQGQGGTGPAKSGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1032
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1033 EAETHTVPLDI 1043
>gi|37935888|gb|AAP42147.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L++ + AEL A+L +L K+ + I+
Sbjct: 593 VDGAANRDTKLGKAGYVTEQGKQKIIKLDETTNQ-KAELIAILLALQDSKK----EVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + ++P+V+++ EE++ E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYALGIISSQPTQSDSPIVQQIIEEMTKKER-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|391379561|gb|AFM44206.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + +K K LN + HA L AL S L +
Sbjct: 597 VDGAANRETKLGKAGYVTDKGRQKAVPLNDTTNQKTELHAILLALQDSGLEVN------- 649
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 650 -IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDKL 706
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 707 VSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|156052327|ref|XP_001592090.1| hypothetical protein SS1G_06329 [Sclerotinia sclerotiorum 1980]
gi|154704109|gb|EDO03848.1| hypothetical protein SS1G_06329 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 118
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 186 LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
L+ ++Q++L E +E W P+H+G+ GNE AD AK+ +N
Sbjct: 68 LIDKIQQDL---ELEIELRWIPAHIGLCGNEAADRAAKEDVN 106
>gi|47680177|gb|AAT37062.1| pol/vif protein [Human immunodeficiency virus 2]
Length = 1226
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 110 DGSKN---EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N +QG +T KD VK N AEL A +L + K I
Sbjct: 625 DGSCNRASKQGKAGYVTDRGKDRVKPLEQTTNQ---QAELEAFAMAL----EDSGPKVNI 677
Query: 167 ITDSLSCLQAIMNMFH------ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
+TDS Q IM + E+PLV ++ EEL E+ V W P+H GI GN+ D
Sbjct: 678 VTDS----QYIMGIIAGQPTETESPLVSKIIEELIRKEA-VYVGWVPAHKGIGGNQEVDH 732
Query: 221 EAKQAINN 228
Q I
Sbjct: 733 LVSQGIRQ 740
>gi|116206830|ref|XP_001229224.1| hypothetical protein CHGG_02708 [Chaetomium globosum CBS 148.51]
gi|88183305|gb|EAQ90773.1| hypothetical protein CHGG_02708 [Chaetomium globosum CBS 148.51]
Length = 806
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 568 VYVKCIRSAIAYGASSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 627
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 628 EAWVPPLDL 636
>gi|427783471|gb|JAA57187.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 593
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 138 NASIFHAELFALLQSLLTIKQ-LGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSS 196
+SI AE FA+ ++ + ++ +G II+DS Q +F + L +++ L
Sbjct: 340 TSSIAKAECFAIALAIKSRERNVGQAYITIISDS----QEACRLFTKGRLPLKIRHLLGD 395
Query: 197 T-ESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTK 255
+ +WCP H G+ GNE AD A+ A+ N H EE +
Sbjct: 396 ELHNTYRLVWCPGHAGLEGNERADALAR-ALTNRAEHQPPSLLPPPHPTHDALCEEEDND 454
Query: 256 WVNISPNE 263
++P E
Sbjct: 455 PARMAPRE 462
>gi|358376861|dbj|GAA93349.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 362
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSL-------LTIKQLGTCKA---LIITDSLSCLQAIMNMFHENP--LV 187
S+ AEL +L ++ L ++ G +A I++DS+S L AI +++ ++
Sbjct: 91 SVHAAELIGILYAINLINRIVLQQRRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQII 150
Query: 188 KRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKII 243
+ + +T + + W P H I GN+TAD AK+A H +
Sbjct: 151 YAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEAAIPGRTHPFSPLLSRERAY 210
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
I++ +W +W S + LRKI N++
Sbjct: 211 IRQGILTQWEKEWKE-SRDGGHLRKIDNTL 239
>gi|427791897|gb|JAA61400.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 998
Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats.
Identities = 56/301 (18%), Positives = 117/301 (38%), Gaps = 40/301 (13%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSL---QILNPVQNLCLRLATGAFRSSPVVSLEA 57
++ R+Y ++ L Y PV+ ++L+ + + + + TGAF ++ SL+
Sbjct: 600 LITRLYHHVLSPSLTYASPVWWPTYPTQFLKSRVLSAQRTILISI-TGAFYTTRTSSLQV 658
Query: 58 ETGEPNLDIRRKILSSNYIAKTL-------------SIENHPNIMRTLNPLYVRKYENSN 104
+ P +++ L++ + TL S +P T +P + + +
Sbjct: 659 VSNIPPINLTLDRLNAEFSLFTLRQTTYYGVHSYFPSALQYPPDPFTYHPAFRLTFPYTR 718
Query: 105 MKPTI--------------DGSKNEQGVGCALTIPEKD----IVKRFGLNKNASIFHAEL 146
+ + DGS G A + +++F L+ + + AE+
Sbjct: 719 LTTSTACRLSKHPATHVYTDGSYLHNIAGAAFVAFNHNSSLITLRKFHLHNATTAYDAEI 778
Query: 147 FALLQSLLTIKQLGTCKAL-IITDSLSCLQAIMNMFHENPLVKRVQEELSS---TESPVE 202
A +++ I K + + TD LS L + + + + ++ +L P+
Sbjct: 779 LAFAEAIHFILISPLKKPVHLYTDCLSILMRLASTNDSDTRLINIKHQLHKCYLQHIPIH 838
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDVIHNELF-FDEVKIIIKKKYTEEWNTKWVNISP 261
P+H GI GNE AD A A + +I + ++ + +W++ W P
Sbjct: 839 LFHVPAHTGITGNEVADTAASCARTSGLIRSSKHTLPHIRKQFQTTLKLQWHSHWQQEGP 898
Query: 262 N 262
N
Sbjct: 899 N 899
>gi|116200568|ref|XP_001226096.1| hypothetical protein CHGG_10829 [Chaetomium globosum CBS 148.51]
gi|88175543|gb|EAQ83011.1| hypothetical protein CHGG_10829 [Chaetomium globosum CBS 148.51]
Length = 505
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 174 VYVKCIRSAIAYGASSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 233
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 234 EAWVPPLDL 242
>gi|37935970|gb|AAO47208.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 19/133 (14%)
Query: 96 YVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLT 155
YV N N K G EQG + + E K AEL A+L +L
Sbjct: 592 YVDGAANRNTKLGKAGYVTEQGKQKVIKLEETTNQK------------AELMAILLALKD 639
Query: 156 IKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIA 213
K+ I+TDS L I + ++P+V+++ EEL+ E V W P+H GI
Sbjct: 640 SKE----TVNIVTDSQFALGIISSQPTQSDSPIVQQIIEELTKKEQ-VYLAWVPAHKGIG 694
Query: 214 GNETADEEAKQAI 226
GNE D+ + I
Sbjct: 695 GNEKIDKLVSKDI 707
>gi|116179112|ref|XP_001219405.1| hypothetical protein CHGG_00184 [Chaetomium globosum CBS 148.51]
gi|88184481|gb|EAQ91949.1| hypothetical protein CHGG_00184 [Chaetomium globosum CBS 148.51]
Length = 498
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+P+ +LE
Sbjct: 351 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 410
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 411 TETWVPPLDL 420
>gi|254548002|gb|ACT66823.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEK---DIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + ++ I+K G AEL A+L L +K+ G +A
Sbjct: 593 VDGAANRETKLGKAGYVTDRGRQKIIKLEGTTNQK----AELEAVL---LALKESGK-QA 644
Query: 165 LIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L I ++PLV+++ EE++ E V W P+H GI GNE D+
Sbjct: 645 NIVTDSQYVLGIISATPDQSDSPLVQKIIEEMTKKEK-VYLSWVPAHKGIGGNENIDKLV 703
Query: 223 KQAI 226
+ I
Sbjct: 704 SKDI 707
>gi|444892702|gb|AGE13510.1| pol protein, partial [Human immunodeficiency virus]
Length = 1009
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + E+ K L + + AEL A+L +L K+ I+
Sbjct: 593 VDGAANRDTKLGKAGYVTEQGKQKIVKLEETTNQ-KAELMAMLLALQDSKE----TVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+P+V+++ EEL+ + V W P+H GI GNE D+ +
Sbjct: 648 TDSQYTLGIISSQPTQSESPIVQQIIEELTKKDK-VYLTWVPAHKGIGGNEKIDKLVSKD 706
Query: 226 I 226
I
Sbjct: 707 I 707
>gi|154277306|ref|XP_001539494.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413079|gb|EDN08462.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1321
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNS---------ASSNSLQILNPVQNLCLRLATGAFRSSPVVSL 55
+Y +IR L YG ++ A L VQN CLR+ GA++ +P +L
Sbjct: 1015 VYNMVIRPALTYGAIAWHQPQGQGGTGPAKPGLALKLTTVQNSCLRIVAGAYKRTPTSTL 1074
Query: 56 EAETGEPNLDI 66
EAET LDI
Sbjct: 1075 EAETHTVPLDI 1085
>gi|116197178|ref|XP_001224401.1| hypothetical protein CHGG_05187 [Chaetomium globosum CBS 148.51]
gi|88181100|gb|EAQ88568.1| hypothetical protein CHGG_05187 [Chaetomium globosum CBS 148.51]
Length = 401
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+YK IRS L YG ++ + L QN LR+ GA++ +P+ +LE
Sbjct: 90 VYKKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAYKHTPIRNLE 149
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 150 TETWVPPLDL 159
>gi|427798049|gb|JAA64476.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 972
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATG--AFRSSPVVSLEAET 59
L+ +YK +R L++GC +++ A + L+ L ++ LRL G F ++ V+ LEA T
Sbjct: 680 LLMVYKMYVRPVLEFGCVLFSGAPAYKLRPLVLLEREALRLCLGLPKFVANAVLYLEART 739
Query: 60 GEPNLDIRRKILS-SNYIAKTLSIENHPNIMRTLNP-LYVRKYENSNMKPTIDGSKNEQG 117
P L R +L+ +++ S NH I+ NP L+ ++ KP I Q
Sbjct: 740 --PPLLSRFNLLTVQSFLRLYESPSNHAQIVFISNPDLFFSEHWPRFRKPQIVFV---QS 794
Query: 118 VGCALTIPEKDIVKRFGLNKNASIFHAELF 147
+ +L + +D++ L K+ I + ++F
Sbjct: 795 LLDSLNVRIRDVLPMTMLPKSIEIVYHDIF 824
>gi|60102723|gb|AAX14029.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
L+S PV W P H GIAGNE AD AKQ D H
Sbjct: 952 LASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSH 990
>gi|400595699|gb|EJP63491.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 560
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 33/144 (22%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI-----KQLGT 161
DGSK EQ G G A+ ++ I + G + +F AE+ ++ L + G
Sbjct: 281 DGSKTEQDTAGFGYAVYRRQQLIAQGCGQIGRSEVFDAEIKGAVEGLRAALAHQRPKEGI 340
Query: 162 CKALIITDSLSCL--------QAIMNMFHE----NPLVKRVQEELSSTESPVEFLWCPSH 209
+ T + C+ Q MF + +P + RV+ WCP H
Sbjct: 341 TVCIDNTSVIDCIGTTAPPSSQMAFRMFQKTGDAHPGMIRVR-------------WCPGH 387
Query: 210 VGIAGNETADEEAKQAINNDVIHN 233
GI GNE AD+ AK++ V N
Sbjct: 388 TGIEGNELADQLAKESAKMPVGDN 411
>gi|83584378|gb|ABC24964.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
L+S PV W P H GIAGNE AD AKQ D H
Sbjct: 986 LASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSH 1024
>gi|83584384|gb|ABC24968.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
L+S PV W P H GIAGNE AD AKQ D H
Sbjct: 986 LASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSH 1024
>gi|358376848|dbj|GAA93341.1| transposon I factor, partial [Aspergillus kawachii IFO 4308]
Length = 595
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 19/151 (12%)
Query: 140 SIFHAELFALLQSL-------LTIKQLGTCKA---LIITDSLSCLQAIMNMFHEN--PLV 187
S+ AEL +L ++ L ++ G +A I++DS+S L AI +++ ++
Sbjct: 324 SVHAAELIGILYAINLINRIVLQQRRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQII 383
Query: 188 KRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQAINNDVIH--NELFFDEVKI 242
+ + +T + + W P H I GN+TAD AK+A H + L E +
Sbjct: 384 YAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEAAIPGKTHPFSPLLSRE-RA 442
Query: 243 IIKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
I++ +W +W S + LRKI N++
Sbjct: 443 YIRQGILTQWEKEWKE-SRDGGHLRKIDNTL 472
>gi|83584381|gb|ABC24966.1| reverse transcriptase [Monascus pilosus]
Length = 1183
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIH 232
L+S PV W P H GIAGNE AD AKQ D H
Sbjct: 988 LASPRRPVRVSWVPGHTGIAGNELADRLAKQGAAMDGSH 1026
>gi|67866559|gb|AAY82292.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L +N + EL A+L +L Q + I+
Sbjct: 604 VDGAANKETKLGKAGFVTDRGRQKVVSL-ENTTNQKTELQAILMALQDXGQ----EVNIV 658
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q M + H P LV ++ EEL E V W P+H GI GNE D+
Sbjct: 659 TDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKL 713
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D ++ ++ E +++ W ++ + N
Sbjct: 714 VSSG-----IRKVLFLDGIE--KAQEEHERYHSNWKAMASDFN 749
>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
Length = 602
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 116 QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQ 175
QG+ AL I E+ V+R G ++ +++ A+ K G A I+ +
Sbjct: 343 QGISLALQIAEQ-YVERGGKRRDIAVYTDNQAAIWS---ITKAEGRSGAYILEE------ 392
Query: 176 AIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
+ R + L PV W P+HVGI GNE AD AK+A
Sbjct: 393 -----------IARQVQRLQDKGRPVTVRWIPAHVGIPGNEAADIAAKEATG 433
>gi|156033247|ref|XP_001585460.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154699102|gb|EDN98840.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 358
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 29 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 88
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 89 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 148
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A NE F + + +K+ +++W
Sbjct: 149 LADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 184
>gi|9929869|dbj|BAB12110.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L I+ +
Sbjct: 627 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDIRDK---QVN 678
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 679 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGIYGNQLA 733
Query: 219 DEEAK 223
DE AK
Sbjct: 734 DEAAK 738
>gi|7327281|gb|AAB26437.2| reverse transcriptase homolog [Chironomus thummi]
Length = 883
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
IYK IR YGC + S + LQ L +QN LR+ R + L E P++
Sbjct: 802 IYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTEAKIPSI 861
Query: 65 DIRRKILSSNYIAKTLSIEN 84
+ R+ ++S +L+ +N
Sbjct: 862 EGSRRKVASESSTVSLASQN 881
>gi|116198447|ref|XP_001225035.1| hypothetical protein CHGG_07379 [Chaetomium globosum CBS 148.51]
gi|88178658|gb|EAQ86126.1| hypothetical protein CHGG_07379 [Chaetomium globosum CBS 148.51]
Length = 712
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG P ++ + L QN LR+ GAF+ +P+ +LE
Sbjct: 469 VYTKCIRSALAYGAPSFHILTDVGGEPVKKGITKALGKAQNKSLRILAGAFKYTPIRNLE 528
Query: 57 AETGEPNLDI 66
E P LD+
Sbjct: 529 TEAWVPPLDL 538
>gi|156037406|ref|XP_001586430.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980]
gi|154697825|gb|EDN97563.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 922
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 594 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 653
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 654 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 713
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A NE F + + +K+ +++W
Sbjct: 714 LADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 749
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 412 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 470
>gi|407915534|gb|EKG09113.1| hypothetical protein MPH_13896 [Macrophomina phaseolina MS6]
Length = 288
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 133 FGLNKNASIFHAELFALLQSLLTIKQLGTC----KALIITDSLSCLQAIMNMFH--ENPL 186
G + A++F A+L+A+ + L + + T + + TD+ + L+A++ E L
Sbjct: 7 LGTIRTATVFAAKLWAI-EMALDLADVETAHNKRRIALFTDNQAALRALVTPGEQSEQYL 65
Query: 187 VKRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQA 225
++ + +L+ + ++F W PSH G+ GNE AD+ AK A
Sbjct: 66 LRSITPKLTGLQQQGVSIKFHWVPSHRGVPGNEEADKLAKAA 107
>gi|315272224|gb|ADU02678.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L K+ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTKE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|242786247|ref|XP_002480768.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
gi|218720915|gb|EED20334.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
Length = 278
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 23/149 (15%)
Query: 135 LNKNASIFHAELFALLQSLLTIKQLGTCKAL--IITDSLSCLQAIMNMFHENPLVKRVQE 192
+ +F AEL +L LG A+ + + QA++ H R E
Sbjct: 1 MGHGHEVFDAELVGML--------LGAQNAIDRLRSTRPGPGQALVLRAH------RAAE 46
Query: 193 ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII-IKKKYTEE 251
+L+ PV W P H GI GNE AD+ AK+A + F+ + + +++ TE
Sbjct: 47 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPG---FEHLSLAHVRRACTEA 103
Query: 252 WN---TKWVNISPNENKLRKIKNSILPSS 277
++W I+ + + R + +P
Sbjct: 104 RRAAVSEWAQINAVQGRHRDGRVYKMPRG 132
>gi|392872128|gb|AFM85330.1| pol polyprotein, partial [Simian immunodeficiency virus]
Length = 1006
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTES 199
AEL A+L +L K+ K I+TDS L LQ + ++PLV+ + +EL + E+
Sbjct: 634 QAELQAILLALKDAKE----KVNIVTDSQYVLGILQGTPDQ-SDSPLVEEIIQELMNKEA 688
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAI 226
V W P+H GI GNE D+ + I
Sbjct: 689 -VYLNWVPAHKGIGGNEEVDKLVSKNI 714
>gi|156043557|ref|XP_001588335.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980]
gi|154695169|gb|EDN94907.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 674
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 346 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 405
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 406 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 465
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A NE F + + +K+ +++W
Sbjct: 466 LADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 501
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 164 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 222
>gi|398832630|ref|ZP_10590787.1| ribonuclease HI [Herbaspirillum sp. YR522]
gi|398222967|gb|EJN09323.1| ribonuclease HI [Herbaspirillum sp. YR522]
Length = 144
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH--- 182
EK+I FG +N + EL A++Q+L +K+ C+ ++ TDS + I H
Sbjct: 31 EKEI---FGGERNTTNNRMELMAVIQALTVLKR--PCEVVVHTDSQYVQKGISEWIHGWK 85
Query: 183 ENPLVKRVQE-----------ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+E + + E VE+ W H G AGNE AD+ A + +
Sbjct: 86 ARGWKTAAREPVKNADLWQALDAAQAEHQVEWRWVRGHNGHAGNERADQLANRGV 140
>gi|110815944|sp|Q79666.3|POL_HV1MV RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1446
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 95 LYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLL 154
YV N N K G EQG +++I+K + + AEL A+L +L
Sbjct: 1028 FYVDGAANRNTKLGKAGYVTEQG--------KQNIIKL----EETTNQKAELMAVLIALQ 1075
Query: 155 TIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGI 212
K+ + I+TDS L I + ++P+V+++ EEL+ E V W P+H GI
Sbjct: 1076 DSKE----QVNIVTDSQYVLGIISSQPTQSDSPIVQQIIEELTKKER-VYLTWVPAHKGI 1130
Query: 213 AGNETADE 220
GNE D+
Sbjct: 1131 GGNEKIDK 1138
>gi|116181380|ref|XP_001220539.1| hypothetical protein CHGG_01318 [Chaetomium globosum CBS 148.51]
gi|88185615|gb|EAQ93083.1| hypothetical protein CHGG_01318 [Chaetomium globosum CBS 148.51]
Length = 537
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 226 VYTKCIRSALGYGASSFHIPTDVGGEPAKIGITKALGKAQNKSLRIVAGAFKSTPIRNLE 285
Query: 57 AETGEPNLDI 66
E P LD+
Sbjct: 286 TEAWVPPLDL 295
>gi|156046084|ref|XP_001589597.1| reverse transcriptase [Sclerotinia sclerotiorum 1980]
gi|154693714|gb|EDN93452.1| reverse transcriptase [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1708
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 1424 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 1483
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 1484 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPDHTSVEGNE 1543
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A NE F + + +K+ +++W
Sbjct: 1544 LADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 1579
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 1242 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 1300
>gi|1086126|pir||S46347 pol polyprotein - simian immunodeficiency virus SIVagm (isolate
SAB-1)
gi|466231|gb|AAA21505.1| pol protein [Simian immunodeficiency virus - agm.sab-1]
Length = 1039
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE--NPLVKRVQEEL 194
+N + AEL A+L L ++ G+ K IITDS + I E N +V+++ EEL
Sbjct: 657 ENTTNQKAELEAIL---LALRDSGS-KVNIITDSQYAMGIIAGEPTESDNNIVQQIIEEL 712
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK--KYTEEW 252
E+ V W P+H G+ GNE D+ Q I LF D ++ ++ KY W
Sbjct: 713 IKKEA-VYIAWVPAHKGVGGNEEIDKLVSQG-----IRQVLFLDRIEEAQEEHDKYHANW 766
Query: 253 NT 254
+
Sbjct: 767 RS 768
>gi|358376670|dbj|GAA93204.1| hypothetical protein AKAW_11316 [Aspergillus kawachii IFO 4308]
Length = 452
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 134 GLNKNASIFHAELFALLQSLLTIKQLGTCK-----------ALIITDSLSCLQAIMNMFH 182
G ++ S++ AEL A ++ + Q+ T K A I++DS+S LQAI + +
Sbjct: 47 GSMEHWSVYAAELMAFFYAISLVLQV-TWKRQSHLDRVEHPAAILSDSMSALQAIRSPSN 105
Query: 183 ENP--LVKRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQAINNDVI----HN 233
+ +++ + + S ++ PV W P H GN+ AD AK+A+ ++ HN
Sbjct: 106 RSGRRIIRAILQVASRNDARGIPVRLQWVPRHCNDPGNDEADRLAKEAVALEIGLTNKHN 165
Query: 234 ELFFDEVKII 243
F + ++
Sbjct: 166 HYCFWGIAVL 175
>gi|116205830|ref|XP_001228724.1| hypothetical protein CHGG_02208 [Chaetomium globosum CBS 148.51]
gi|88182805|gb|EAQ90273.1| hypothetical protein CHGG_02208 [Chaetomium globosum CBS 148.51]
Length = 818
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 487 VYVKCIRSAIAYGASSFHQPTAPRATGPKGPAKLLSKAQNRSLRIVVGAYKSAPIRCLET 546
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 547 EAWVPPLDL 555
>gi|41223200|emb|CAD92649.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q M + H P LV ++ EEL E V
Sbjct: 537 AELQAILMALQESGQEVNIVTDS----QYAMGIIHSQPDKSESNLVSQIIEELIKKER-V 591
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISP 261
W P+H GI GNE D+ I LF D ++ ++ E +++ W ++
Sbjct: 592 YLSWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGIE--KAQEEHERYHSNWKAMAS 644
Query: 262 NEN 264
+ N
Sbjct: 645 DFN 647
>gi|82304715|sp|Q9IDV9.3|POL_HV1YB RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|8920152|emb|CAB96338.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1449
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q +A I+TDS Q M + H P LV ++ EEL E V
Sbjct: 1074 AELQAILLALQESGQEANIVTDS----QYAMGIIHSQPDKSESDLVGQIIEELIKKER-V 1128
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
W P+H GI GNE D + + I LF D ++
Sbjct: 1129 YLSWVPAHKGIGGNEQVD-----XLVSSGIRXVLFLDGIE 1163
>gi|262272880|gb|ACY40653.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L L +K+ G +A I+TDS L I ++PLV+++ EE++ E V
Sbjct: 628 AELEAVL---LALKESGK-QANIVTDSQYVLGIISATPDQSDSPLVQKIIEEMTKKEK-V 682
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ + I
Sbjct: 683 YLSWVPAHKGIGGNEDIDKLVSKDI 707
>gi|227821696|ref|YP_002825666.1| ribonuclease HI [Sinorhizobium fredii NGR234]
gi|227340695|gb|ACP24913.1| putative ribonuclease HI [Sinorhizobium fredii NGR234]
Length = 278
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 22/125 (17%)
Query: 117 GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQA 176
G G A+ +I G N + + EL ALL+ + K LG ++ +DS C+
Sbjct: 123 GWGVAVYRDRAEIASDHGGNADTTNNRMELTALLKGIEVAKALGA-PVVVWSDSRYCVDG 181
Query: 177 IMNMFH---------ENPLVKRVQEELSSTE------------SPVEFLWCPSHVGIAGN 215
+ H P +E+ + E + WC H GI GN
Sbjct: 182 CNDWRHGWKKKEWKKAGPKASAKNQEVKNVELWQAIDAALERADQITIRWCKGHAGIVGN 241
Query: 216 ETADE 220
E ADE
Sbjct: 242 ERADE 246
>gi|302784366|ref|XP_002973955.1| hypothetical protein SELMODRAFT_414436 [Selaginella moellendorffii]
gi|300158287|gb|EFJ24910.1| hypothetical protein SELMODRAFT_414436 [Selaginella moellendorffii]
Length = 195
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLN-----KNASIFHAELFALLQSL-----LTIKQL 159
DG N+Q G + IP + + + G + S EL LL+SL L K
Sbjct: 32 DGPGNQQHGGYGVYIPSQGVYQAHGRRPQQDLRRCSAITFELLGLLESLQMAIMLQEKGG 91
Query: 160 GTC--KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL--------WCP-- 207
G C + + TDS L ++ M+ EN ++S+ ES V F +C
Sbjct: 92 GVCHREVFVYTDSYDSL-TLLEMYMENSTYLSRHSDVSTMESIVMFAGMLPCNVHFCKVK 150
Query: 208 SHVGIAGNETADEEAK 223
H + GNE AD+ AK
Sbjct: 151 GHDKVLGNEVADKLAK 166
>gi|116200271|ref|XP_001225947.1| hypothetical protein CHGG_08291 [Chaetomium globosum CBS 148.51]
gi|88179570|gb|EAQ87038.1| hypothetical protein CHGG_08291 [Chaetomium globosum CBS 148.51]
Length = 544
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 229 VYVKCIRSAIAYGASSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 288
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 289 EAWVPPLDL 297
>gi|427791585|gb|JAA61244.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1099
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 163 KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP------VEFLWCPSHVGIAGNE 216
+A+II+D C A+ + P ++ L+S + + F W PSHVG++GNE
Sbjct: 891 RAVIISD---CKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNE 947
Query: 217 TADEEAKQAINN 228
AD A +A++
Sbjct: 948 RADALANEALSR 959
>gi|427780891|gb|JAA55897.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 848
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLR--LATGAFRSSPVVSLEAETGEPN 63
YK+LIRSKL+Y +Y++ +N L VQN R L+ ++R+S V +L+++ P+
Sbjct: 697 YKTLIRSKLEYASTIYDNHQANITNSLESVQNRAARFILSDYSYRTS-VSALKSQLCLPS 755
Query: 64 LDIRRK 69
L RRK
Sbjct: 756 LSSRRK 761
>gi|156044334|ref|XP_001588723.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980]
gi|154694659|gb|EDN94397.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 789
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 26/151 (17%)
Query: 99 KYENSNMKPTIDGSKNEQ---GVGCALTIPEKDIV---KRFGLNKNASIFHAELFALLQS 152
K S+++ DGSK+E G I + DI F L NA +F AE A +
Sbjct: 485 KIPRSDIQIFSDGSKSESKDNATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAG 544
Query: 153 LLTIKQLGTCKALIITDSLSCLQ----AIMNMFHENPLVKRVQEEL-------------- 194
T K L + TD L A+ H N +RV E+
Sbjct: 545 --TAKALTLASTKLATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLP 602
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
++ + W P H+ I GNE AD+ AK+
Sbjct: 603 HTSPGKIRVRWVPGHLDIPGNEIADKAAKEG 633
>gi|427791403|gb|JAA61153.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 939
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLR--LATGAFRSSPVVSLEAETGEPN 63
YK+LIRSKL+Y +Y++ +N L VQN R L+ ++R+S V +L+++ P+
Sbjct: 791 YKTLIRSKLEYASTIYDNHQANITNSLESVQNRAARFILSDYSYRTS-VSALKSQLCLPS 849
Query: 64 LDIRRK 69
L RRK
Sbjct: 850 LSSRRK 855
>gi|119176827|ref|XP_001240277.1| hypothetical protein CIMG_07440 [Coccidioides immitis RS]
Length = 188
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 97 VRKYENSNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL- 153
++ +N ++ DGSK E Q G + + +I + L K +F AELFA+ ++
Sbjct: 28 IKNLDNRSLILYSDGSKGEESQYAGAGVYNLQDNIRFSWNLGKYLEVFDAELFAIDKAFK 87
Query: 154 -----LTIKQLGTCKALIITDSLSCLQAIMNMFHENPL-----VKRVQEELSSTESPVEF 203
+ + +DS + +Q +M + L +++ + + + + +
Sbjct: 88 LASSISQSQSRSISDIWVFSDSEAAIQRLMKQDLNSGLYYLQSIRKTAKSIKNQQINLHL 147
Query: 204 LWCPSHVGIAGNETADEEAKQA 225
W P+HV I NE AD K+A
Sbjct: 148 HWIPAHVNIHENEEADLAVKKA 169
>gi|9828660|gb|AAB47724.2| Pol protein [Simian immunodeficiency virus]
Length = 1014
Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++L + T I+TDS L LQ + E+PLV+ + ++L E +
Sbjct: 643 AELQAILMALEDSTGPVNIVTDSQYALGVLQGTPDQ-SESPLVEEIIQKLIKREQ-IYLS 700
Query: 205 WCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ Q I
Sbjct: 701 WVPAHKGIGGNEQVDKLVSQGI 722
>gi|156039948|ref|XP_001587081.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980]
gi|154696167|gb|EDN95905.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1500
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 1171 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 1230
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 1231 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 1290
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEW 252
AD+ AK+A NE F + + +K+ +++W
Sbjct: 1291 LADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 1326
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 989 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 1047
>gi|427780027|gb|JAA55465.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 859
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 163 KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP------VEFLWCPSHVGIAGNE 216
+A+II+D C A+ + P ++ L+S + + F W PSHVG++GNE
Sbjct: 648 RAVIISD---CKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNE 704
Query: 217 TADEEAKQAINND 229
AD A +A++
Sbjct: 705 RADALANEALSRQ 717
>gi|237748729|ref|ZP_04579209.1| ribonuclease H [Oxalobacter formigenes OXCC13]
gi|229380091|gb|EEO30182.1| ribonuclease H [Oxalobacter formigenes OXCC13]
Length = 144
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 133 FGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH---------- 182
FG + + + EL A++++L +K+ CK ++ TDS + I H
Sbjct: 35 FGGDADTTNNRMELMAVIEALRALKR--PCKVVLHTDSQYVQKGISEWIHKWKARGWRTA 92
Query: 183 ENPLVKRV----QEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
+ LVK V + + + + +++ W H G GNE AD+ A + +++
Sbjct: 93 DKKLVKNVDLWMELDQARAQHDIDWRWIKGHAGHEGNEKADQLANKGVDS 142
>gi|116179694|ref|XP_001219696.1| hypothetical protein CHGG_00475 [Chaetomium globosum CBS 148.51]
gi|88184772|gb|EAQ92240.1| hypothetical protein CHGG_00475 [Chaetomium globosum CBS 148.51]
Length = 440
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-------NSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
+Y IRS + YG ++ ++ ++L+ QN LR+ GA++S+P+ LE
Sbjct: 109 VYVKCIRSAIAYGASSFHQPTAPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLET 168
Query: 58 ETGEPNLDI 66
E P LD+
Sbjct: 169 EAWVPPLDL 177
>gi|14582835|gb|AAK69674.1|AF349680_2 pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N G +T K+ VK +N + AEL A+L L +K G +
Sbjct: 615 VDGAANRNSKLGKAGYVTDRGKEKVKEL---ENTTNQKAELGAVL---LALKDSGK-RVN 667
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS + E+PLV+++ E++ E V W P+H GI GNE D+
Sbjct: 668 IVTDSRHVFGILAGSPDTSESPLVQQIIEQMIGKEE-VYLSWVPAHKGIGGNEQVDKLVS 726
Query: 224 QAINN 228
Q I
Sbjct: 727 QGIRQ 731
>gi|299740492|ref|XP_001833788.2| hypothetical protein CC1G_12170 [Coprinopsis cinerea okayama7#130]
gi|298404271|gb|EAU88018.2| hypothetical protein CC1G_12170 [Coprinopsis cinerea okayama7#130]
Length = 432
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+++Y+SL+ L +GC + +N LQ L VQ LR G S V L ETG
Sbjct: 140 LLKLYQSLVDPHLTHGCEIILDTVANQLQKLERVQLAFLRRVLGVGERSIRVVLFTETGM 199
Query: 62 PNLDIRRKILSSNYI 76
+ IRR +L+ + +
Sbjct: 200 LPIRIRRLLLAIDCV 214
>gi|51599131|gb|AAU08216.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L +L K+ I+TDS L I + E+P+V+++ EEL+ + V
Sbjct: 626 AELMAILLALQDSKKT----VNIVTDSQYALGIISSQPTQSESPIVQQIIEELTKKDQ-V 680
Query: 202 EFLWCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 681 YLAWVPAHKGIGGNEKIDK 699
>gi|116197000|ref|XP_001224312.1| hypothetical protein CHGG_05098 [Chaetomium globosum CBS 148.51]
gi|88181011|gb|EAQ88479.1| hypothetical protein CHGG_05098 [Chaetomium globosum CBS 148.51]
Length = 243
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+ +P+ +LE
Sbjct: 91 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKHTPIRNLE 150
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 151 TETWVPPLDL 160
>gi|427779389|gb|JAA55146.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 847
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLR--LATGAFRSSPVVSLEAETGEPN 63
YK+LIRSKL+Y +Y++ +N L VQN R L+ ++R+S V +L+++ P+
Sbjct: 696 YKTLIRSKLEYASTIYDNHQANITNSLESVQNRAARFILSDYSYRTS-VSALKSQLCLPS 754
Query: 64 LDIRRK 69
L RRK
Sbjct: 755 LSSRRK 760
>gi|427796097|gb|JAA63500.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1225
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 87 NIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAEL 146
N++R YV + + + T D S+ ++ G + P D F + IF AE
Sbjct: 931 NMLRATLQDYVLRMQAHVIIAT-DASQRDEKSGIGIYCPVLDWSFSFRIPDFTPIFMAEF 989
Query: 147 FALLQSLLTIKQLGTC--KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A++ L +++L T A+IITDSLS A+ + + + + + + V +
Sbjct: 990 LAVV---LALRKLTTSINSAVIITDSLSVCSALTA--SGSKFLNQFKSLVPDHLTHVRLV 1044
Query: 205 WCPSHVGIAGNETADE 220
W P H G+ NETAD
Sbjct: 1045 WVPGHRGLFINETADA 1060
>gi|427791385|gb|JAA61144.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 937
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLR--LATGAFRSSPVVSLEAETGEPN 63
YK+LIRSKL+Y +Y++ +N L VQN R L+ ++R+S V +L+++ P+
Sbjct: 789 YKTLIRSKLEYASTIYDNHQANITNSLESVQNRAARFILSDYSYRTS-VSALKSQLCLPS 847
Query: 64 LDIRRK 69
L RRK
Sbjct: 848 LSSRRK 853
>gi|300811139|gb|ADK35864.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L + GT I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTE--GTL-VNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
Query: 224 QAINNDVI 231
I D++
Sbjct: 725 --ITEDIM 730
>gi|171741225|ref|ZP_02917032.1| hypothetical protein BIFDEN_00299 [Bifidobacterium dentium ATCC
27678]
gi|283455412|ref|YP_003359976.1| ribonuclease H [Bifidobacterium dentium Bd1]
gi|171276839|gb|EDT44500.1| ribonuclease HI [Bifidobacterium dentium ATCC 27678]
gi|283102046|gb|ADB09152.1| rnh Ribonuclease H [Bifidobacterium dentium Bd1]
Length = 400
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 31/129 (24%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ +I TDS ++C ++ + +N L+
Sbjct: 55 GELCAVLEALRA--HPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALI 112
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKK 247
K + E+S PV+F+W H G AGNE DE A+ + D+ + ++K
Sbjct: 113 KAIDAEISQRPGPVKFVWVKGHAGNAGNEKVDELAR-----------TYADDCRSKVRKG 161
Query: 248 Y--TEEWNT 254
Y E W +
Sbjct: 162 YLPLEGWQS 170
>gi|409180169|gb|AFV26185.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q VG A I + KD VK N AEL A L +L+ KA
Sbjct: 604 VDGSCNRQSKVGKAGYITDRGKDKVKILEQTTNQ---QAELEAFLMALID----SGPKAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
II DS Q +M + E+ LV ++ EE+ E V W P+H GI GN+ D
Sbjct: 657 IIVDS----QYVMGIVTGCPTESESKLVNQIIEEMIKKEE-VYVAWVPAHKGIGGNQEID 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|170061766|ref|XP_001866378.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167879875|gb|EDS43258.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 392
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
L+R+YK+ I S L+YG + SA+ + L +L +Q LR+ G S+ ++LE G
Sbjct: 170 LLRLYKTTILSVLEYGSFCFQSAAKSRLLVLQRIQYRSLRIVLGCMHSTHNMTLEVLAGV 229
Query: 62 PNLDIRRKILSSNYIAK 78
L R LS ++ +
Sbjct: 230 LPLRTRYYELSYRFLIR 246
>gi|242775784|ref|XP_002478709.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218722328|gb|EED21746.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 991
Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 756 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 792
>gi|384483913|gb|EIE76093.1| hypothetical protein RO3G_00797 [Rhizopus delemar RA 99-880]
Length = 749
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R++L+YG + N +++ +++L QN CLR GA + + + + P
Sbjct: 590 RFYAQIVRARLEYGLAI-NRLTASQIKVLEDAQNDCLRRIYGASKRASTKVMRHLSRLPT 648
Query: 64 LDIRRKILSSNYIAKTLSI 82
+ R IL + ++ ++ ++
Sbjct: 649 MKERLNILQAQFLFRSFTL 667
>gi|242770563|ref|XP_002342006.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218725202|gb|EED24619.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1159
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-----KA 164
DGS + G+G A+ K G + +++ EL + +L + + C +A
Sbjct: 942 DGSGFDNGIGAAVYSSIGQAYKLVGSSNTHTVYAGELEGIDAALEILLRSQPCDDNPHEA 1001
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEELS-----STESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + V W P H G+ GNE
Sbjct: 1002 TIYTDNQAAIRATCQPGRSSGQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 1061
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 1062 ADQLAKLA 1069
>gi|156043837|ref|XP_001588475.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980]
gi|154695309|gb|EDN95047.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 824
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD+ AK+A NE F + +I+K+
Sbjct: 587 KAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMIVKEYA 646
Query: 249 TEEW 252
+++W
Sbjct: 647 SDQW 650
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 341 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 399
>gi|384499420|gb|EIE89911.1| hypothetical protein RO3G_14622 [Rhizopus delemar RA 99-880]
Length = 682
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y S +R L+YG + + + + LN VQ+ CLR+ G R+S V L P+
Sbjct: 463 RLYASFVRPNLEYGLAIAHLLKKDYTE-LNRVQDRCLRMIVGGHRTSFTVVLRHICNLPS 521
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+D R L Y + + +
Sbjct: 522 MDFRADTLVLKYCLRVSGLPD 542
>gi|255964745|gb|ACU44666.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L +L K+ I+TDS L I + ++P+V+++ EEL+ E V
Sbjct: 628 AELMAVLLALQDSKE----TVNIVTDSQYVLGIISSQPTQSDSPIVQQIIEELTKKEQ-V 682
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ + I
Sbjct: 683 YLAWVPAHKGIGGNEKIDKLVSKDI 707
>gi|116204439|ref|XP_001228030.1| hypothetical protein CHGG_10103 [Chaetomium globosum CBS 148.51]
gi|88176231|gb|EAQ83699.1| hypothetical protein CHGG_10103 [Chaetomium globosum CBS 148.51]
Length = 631
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + + L QN LR+ GAF+ +P+ +LE
Sbjct: 419 VYTKCIRSALAYGASSFHIPTDVGGEPVKKSITKALGKAQNKGLRIVAGAFKHTPIRNLE 478
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 479 TETWVPPLDL 488
>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIMNMFHEN--PLV 187
S+ AEL +L ++ I ++ + + A I++ S+S LQAI +++ ++
Sbjct: 968 SVHAAELIGILHAIEIINKVASERRRLHAEQVRLATILSGSMSALQAIQTPGNKSGQRII 1027
Query: 188 KRVQEELSSTES---PVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNEL-FFDEVKII 243
+ E +T++ + W P H GN++AD AK+A H K
Sbjct: 1028 HAILEAAINTKTHGVTIRLQWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSREKAF 1087
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
++K +W +W N LR I N++
Sbjct: 1088 VRKNIYVQWEKEWKESREGGN-LRTIDNAL 1116
>gi|242815637|ref|XP_002486608.1| hypothetical protein TSTA_105810 [Talaromyces stipitatus ATCC
10500]
gi|218714947|gb|EED14370.1| hypothetical protein TSTA_105810 [Talaromyces stipitatus ATCC
10500]
Length = 485
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 31/182 (17%)
Query: 101 ENSNMKPTIDGSKNEQGVGCALTIPE--KDIVKRFGLNKNASIFHAEL----FALLQSLL 154
+N ++ DGS + +G ++ IP K + G ++++ AE FAL +L
Sbjct: 124 KNEHIAIYTDGSGYQGYIGTSMVIPAFGKQRTECIGTEGTSTVYAAEACGIKFALETTLQ 183
Query: 155 TIKQ-LGTCKALIITDSLSCLQAIMN--------MFHE--NPLVKRVQEELSSTESPVEF 203
Q + T K +I +DS + L+ +MN H+ + L K + E++ V
Sbjct: 184 IADQNIQTKKLVIFSDSQAALRTLMNPRMVSGQTYIHDCIDSLRKCIDEDID-----VTL 238
Query: 204 LWCPSHVGIAGNETADEEA---------KQAINNDVIHNELFFDEVKIIIKKKYTEEWNT 254
W P H I GNE AD A +Q + D+ + + K I++ + W
Sbjct: 239 RWIPGHEDIPGNEAADRAAKRAALIGARRQIVPGDMDNWTILAAAAKRRIRQSTKDAWEK 298
Query: 255 KW 256
+W
Sbjct: 299 QW 300
>gi|409761|gb|AAA21781.1| pol-like protein [Neurospora crassa]
Length = 1154
Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-----NSLQI-LNPVQNLCLRLATGAFRSSPVVSLEAE 58
IY IRS + YG ++ + + I L Q CLR+ GA++++PV +LE E
Sbjct: 803 IYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKATPVRNLETE 862
Query: 59 TGEPNLDI 66
T P LD+
Sbjct: 863 TFCPPLDL 870
>gi|336270186|ref|XP_003349852.1| hypothetical protein SMAC_00741 [Sordaria macrospora k-hell]
gi|380095241|emb|CCC06714.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 657
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELF--FDEVKIIIKKKYTEEWNTKWVN 258
V+F W P H GI GNE ADE AK + NE + + K++ ++ W
Sbjct: 405 VDFRWVPGHKGITGNEIADELAKAGAEGGEVVNEGLTTLAHSRRLAKREARTDFKAWWAT 464
Query: 259 ISPNENKLRKIKNSILP 275
P ++ SI P
Sbjct: 465 NKPESYADYRLGASIKP 481
>gi|254691749|gb|ACT79338.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEE 193
+N + AEL+A+ L +K GT + I+TDS + LQ + + ++P+V+++ ++
Sbjct: 24 ENTTNQQAELWAID---LALKDSGT-QVNIVTDSQYVMGVLQGLPDQ-SDSPIVEQIIQQ 78
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
L+ ++ + W P+H GI GNE D+ + + I LF DE+
Sbjct: 79 LTQ-KTAIYLAWVPAHKGIGGNEKVDK-----LVSKNIRKVLFLDEI 119
>gi|171685534|ref|XP_001907708.1| hypothetical protein [Podospora anserina S mat+]
gi|170942728|emb|CAP68381.1| unnamed protein product [Podospora anserina S mat+]
Length = 92
Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 2 LIRI---YKSLIRSKLDYGCPVYNSASSNSLQI------LNPVQNLCLRLATGAFRSSPV 52
LIR+ Y IRS + YG Y++ + Q+ L Q LR+ TGA++++P+
Sbjct: 10 LIRVREVYTKCIRSAIVYGATNYHTPTLTGGQLQGLAKRLVKAQTRNLRIVTGAYKATPI 69
Query: 53 VSLEAETGEPNLDI 66
+LE ET P LD+
Sbjct: 70 RNLETETWVPLLDL 83
>gi|29367071|gb|AAO22466.1| pol protein [Simian immunodeficiency virus]
Length = 1012
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L L +K G K I+TDS + I + +NP+V ++ E++ S E+ V
Sbjct: 646 AELQAIL---LALKDSGP-KVNIVTDSQYAMGIISSSPEISDNPIVNQIIEQMISKEA-V 700
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINN 228
W P+H GI GNE D+ + I
Sbjct: 701 YLNWVPAHKGIGGNEEEDKLVSRGIRQ 727
>gi|409764|gb|AAA21792.1| pol-like protein [Neurospora crassa]
Length = 1154
Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 5 IYKSLIRSKLDYGCPVYNSASS-----NSLQI-LNPVQNLCLRLATGAFRSSPVVSLEAE 58
IY IRS + YG ++ + + I L Q CLR+ GA++++PV +LE E
Sbjct: 803 IYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTKCLRVVAGAYKATPVRNLETE 862
Query: 59 TGEPNLDI 66
T P LD+
Sbjct: 863 TFCPPLDL 870
>gi|67866569|gb|AAY82301.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K + K+ + EL A+L +L Q + I+
Sbjct: 604 VDGAANRETKLGKAGFVTDRGRQKVVSI-KDTTNQKTELHAILMALQESGQ----EVNIV 658
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q M + H P LV ++ EEL E V W P+H GI GNE D+
Sbjct: 659 TDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKL 713
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D ++ ++ E +++ W ++ + N
Sbjct: 714 VSSG-----IRKVLFLDGIE--KAQEEHERYHSNWRAMASDFN 749
>gi|407915859|gb|EKG09366.1| Reverse transcriptase, partial [Macrophomina phaseolina MS6]
Length = 1113
Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 131 KRFGLNKNASIFHAELFALLQSL-LTIKQL--GTCKALIITDSLSCLQAIMNMFHENP-- 185
K G K ++F AEL L+ +L L ++ G K + TD+ + L+A++ ++
Sbjct: 981 KYMGTIKATTVFAAELQGLVMALELAEAEMVHGKRKIAVFTDNQAALRALVTPGEQSGQY 1040
Query: 186 LVKRVQEELSSTE---SPVEFLWCPSHVGIAGNETADEEAKQA 225
L+ + +L+ + + V F W P+H G+ GNE AD+ AK A
Sbjct: 1041 LLSSIIAKLTGLQQKGASVGFHWIPAHQGVPGNEEADKLAKAA 1083
>gi|242794549|ref|XP_002482398.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718986|gb|EED18406.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2069
Score = 41.2 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1834 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1870
>gi|242827039|ref|XP_002488756.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712148|gb|EED11575.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 473
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAEL---FALLQSLLTIKQLGT--CKA 164
DGS + G+G A+ K G + +++ EL A L+ LL + G +A
Sbjct: 237 DGSGFDNGIGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQPRGDNPHEA 296
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEELS-----STESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + V W P H G+ GNE
Sbjct: 297 TIYTDNQAAIRATCQPGRSSGQYIIRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 356
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 357 ADQLAKLA 364
>gi|300811118|gb|ADK35846.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRANEM-VYFAWVPGHKGIYGNQLADEATK 724
Query: 224 QAINNDVI 231
I D++
Sbjct: 725 --ITEDIM 730
>gi|255940952|ref|XP_002561245.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585868|emb|CAP93597.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1513
Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 110 DGSKNEQGVGCAL-TIPEKDIVKRF-----GLNKNASIFHAELFALL-----------QS 152
D S + +G A+ T+ E D V F G S+ AEL + Q
Sbjct: 1206 DASGRKGHLGAAIVTLNENDEVTEFQQIQVGPMDRWSVHVAELIGIFYAVNMVFKLFHQR 1265
Query: 153 LLTIKQLGTCKALIITDSLSCLQAIMNMFHENP-----LVKRVQEELSSTESPVEFLWCP 207
L T+ ++ A I+ DS S LQAI N+ +++ + + E+ + W P
Sbjct: 1266 LNTVNRVPVI-ATILCDSKSALQAIQNVKNKSGQRIVHAILQAATEVQGENIKLRLQWMP 1324
Query: 208 SHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
H GN+TAD AK+A H ++ K +W +W S L
Sbjct: 1325 GHCENRGNDTADRLAKEAAQPGKTHPFRPLLSRENAFVRSKIYAQWGQEW-KTSTKGAHL 1383
Query: 267 RKIKNSI 273
RKI +
Sbjct: 1384 RKIDGGL 1390
>gi|116194310|ref|XP_001222967.1| hypothetical protein CHGG_03753 [Chaetomium globosum CBS 148.51]
gi|88179666|gb|EAQ87134.1| hypothetical protein CHGG_03753 [Chaetomium globosum CBS 148.51]
Length = 381
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y + IRS L G ++ A + L QN LR+ GAF+S+P+ +LE
Sbjct: 52 VYTNCIRSALASGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLE 111
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 112 TETWVPPLDL 121
>gi|13383731|gb|AAK21106.1|AF327877_2 pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
Query: 224 QAINNDVI 231
I D++
Sbjct: 725 --ITEDIM 730
>gi|242825393|ref|XP_002488431.1| hypothetical protein TSTA_108610 [Talaromyces stipitatus ATCC
10500]
gi|218712249|gb|EED11675.1| hypothetical protein TSTA_108610 [Talaromyces stipitatus ATCC
10500]
Length = 122
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDV 230
R E+L+ PV W P H GI GNE AD+ AK+A +
Sbjct: 3 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQT 44
>gi|83584387|gb|ABC24970.1| reverse transcriptase [Monascus pilosus]
Length = 1181
Score = 41.2 bits (95), Expect = 0.50, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
L+S PV W P H GIAGNE AD AKQ
Sbjct: 986 LASPRRPVRVSWVPGHTGIAGNELADRLAKQG 1017
>gi|67901980|ref|XP_681246.1| hypothetical protein AN7977.2 [Aspergillus nidulans FGSC A4]
gi|40740441|gb|EAA59631.1| hypothetical protein AN7977.2 [Aspergillus nidulans FGSC A4]
gi|259480727|tpe|CBF73635.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 306
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKRFG---LNKNASIFHAELFALLQSL---LTIKQLGTC 162
+DGS+ QG G I I+ G ++ AE+ ++ L L +G
Sbjct: 20 LDGSRTSQGAGYGYAIYFGPILMSKGHGPAGPRTEVYDAEIIGAVEGLRAALGQPCVGYS 79
Query: 163 KALIIT-DSLSCLQAIMNMFHENPLVKRVQEELSSTES--------------PVEFLWCP 207
L+I D+L+ +++ + P + E S + P++ W P
Sbjct: 80 TQLVILLDNLAAA-SLLASYRPTPHRHGLSETFSQLAAQWMESPSILTMQRKPLQVRWIP 138
Query: 208 SHVGIAGNETADEEAK 223
H GIAGNE AD+ AK
Sbjct: 139 GHSGIAGNELADKLAK 154
>gi|60102699|gb|AAX14028.1| reverse transcriptase [Monascus pilosus]
Length = 1147
Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
L+S PV W P H GIAGNE AD AKQ
Sbjct: 952 LASPRRPVRVSWVPGHTGIAGNELADRLAKQG 983
>gi|301508600|gb|ADK78262.1| pol protein [Simian immunodeficiency virus]
Length = 1023
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N +QG +T ++ VK N AEL A+L L +K G K
Sbjct: 616 VDGAANRNSKQGKAGYITDRGREKVKELEDTTNQK---AELEAVL---LALKDSGK-KVN 668
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS + ++PLV+++ E+L E V W P+H GI GNE D+
Sbjct: 669 IVTDSQYVFGILAGSPDTSDSPLVQQIIEQLIGKEE-VYLSWVPAHKGIGGNEEVDKLVS 727
Query: 224 QAINNDVIHNELFFDEVK 241
+ I LF D ++
Sbjct: 728 KG-----IRQVLFLDGIE 740
>gi|222538216|gb|ACM63175.1| pol protein [Simian immunodeficiency virus]
gi|222538226|gb|ACM63184.1| pol protein [Simian immunodeficiency virus]
gi|222538236|gb|ACM63193.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRF-GLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N +QG +T + +++ G + A L AL +S +
Sbjct: 589 VDGAANRESKQGKAGYVTDKGRQKIRKLEGTTNQKAELEAVLLALEESGKNVN------- 641
Query: 165 LIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L I ++ PLV+++ EE+++ E V W P+H GI GNE D+
Sbjct: 642 -IVTDSQYVLGIIAASPDQSDSPLVQKIIEEMTTKEK-VYLAWVPAHKGIGGNEEIDK 697
>gi|242825408|ref|XP_002488434.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712252|gb|EED11678.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 906
Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H G+ GNE AD+ AK+A
Sbjct: 671 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRA 707
>gi|384483965|gb|EIE76145.1| hypothetical protein RO3G_00849 [Rhizopus delemar RA 99-880]
Length = 200
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R +L+YG + ++ S LQ + QN CLR G S + + +P
Sbjct: 21 RFYSQIVRPQLEYGLAI-SAVKSRELQKIESCQNQCLRRIFGGTSRSSIKVMLHLVNQPT 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVR 98
+ R IL + ++ +T+ + + R L Y+R
Sbjct: 80 MKERIHILQAKFLLRTIDTPDDTLMFRLLP--YIR 112
>gi|242786282|ref|XP_002480775.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720922|gb|EED20341.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 882
Score = 41.2 bits (95), Expect = 0.54, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H G+ GNE AD+ AK+A
Sbjct: 647 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRA 683
>gi|116201383|ref|XP_001226503.1| hypothetical protein CHGG_08576 [Chaetomium globosum CBS 148.51]
gi|88177094|gb|EAQ84562.1| hypothetical protein CHGG_08576 [Chaetomium globosum CBS 148.51]
Length = 674
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+ +P+ +LE
Sbjct: 137 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRMVAGAFKHTPIRNLE 196
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 197 TETWVPPLDL 206
>gi|242775815|ref|XP_002478715.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
gi|218722334|gb|EED21752.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
Length = 1141
Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1052 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1088
>gi|242775805|ref|XP_002478713.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722332|gb|EED21750.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1959
Score = 41.2 bits (95), Expect = 0.56, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1724 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1760
>gi|242786294|ref|XP_002480777.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720924|gb|EED20343.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 40.8 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1763 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1799
>gi|328834433|gb|AEB52843.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 40.8 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L LQA + E+ LV ++ E+L E V W
Sbjct: 637 LQAVQLALQDSGSQVNIVTDSQYVLGILQAQPDK-SESELVNQIIEQLIKKEK-VYLTWV 694
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ I LF D +I + E++++ W ++ + N
Sbjct: 695 PAHKGIGGNEQVDKLVSAG-----IRRVLFLD--RIHKAQDEHEKYHSNWRAMASDFNLP 747
Query: 267 RKIKNSILPS 276
+ I+PS
Sbjct: 748 SLVAKDIVPS 757
>gi|242825355|ref|XP_002488423.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712241|gb|EED11667.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1181
Score = 40.8 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R E+L+ PV W P H G+ GNE AD+ AK+A
Sbjct: 963 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRA 999
>gi|38491771|gb|AAR22151.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 40.8 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + EL A+ +L Q + I+
Sbjct: 598 VDGAANRETKIGKAGYVTDKGRQKVITLTETTNQ-KTELEAIYLAL----QDSGLEVNIV 652
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q M + H P LV R+ E+L + E V W P+H GI GNE D+
Sbjct: 653 TDS----QYAMGIIHAQPDKSESELVSRIIEQLITKEK-VYLSWVPAHKGIGGNEQVDK- 706
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ ++ I LF D + ++ E +++ W ++ + N
Sbjct: 707 ----LVSNGIRKVLFLDGID--KAQEEHERYHSNWRTMASDFN 743
>gi|242775779|ref|XP_002478708.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218722327|gb|EED21745.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 294
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII-IKKK 247
R E+L+ PV W P H GI GNE AD+ AK+A + F+ + + +++
Sbjct: 77 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPG---FEHLSLAHVRRA 133
Query: 248 YTEEWN---TKWVNISPNENKLRKIKNSILPSS 277
TE ++W I+ + + R + +P
Sbjct: 134 CTEARRAAVSEWAQINAVQGRHRDGRVYKMPRG 166
>gi|409180179|gb|AFV26194.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q VG A I + KD VK N AEL A L +L Q KA
Sbjct: 604 VDGSCNRQSKVGKAGYITDRGKDKVKILEQTTNQ---QAELEAFLMAL----QDSGPKAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
II DS Q +M + E+ LV ++ EE+ E + W P+H GI GN+ D
Sbjct: 657 IIVDS----QYVMGIVTGCPTESESRLVNQIIEEMIKKEG-IYVAWVPAHKGIGGNQEID 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|443700141|gb|ELT99252.1| hypothetical protein CAPTEDRAFT_193728 [Capitella teleta]
Length = 337
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFF 237
V FLW PSH GI GNE AD AK ++++ + + +
Sbjct: 44 VSFLWIPSHCGIQGNEAADALAKASLSSQSVQESVTY 80
>gi|353241387|emb|CCA73205.1| hypothetical protein PIIN_07159 [Piriformospora indica DSM 11827]
Length = 224
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 203 FLWCPSHVGIAGNETADEEAKQAINNDVIHNEL---------------FFDEVKIIIKKK 247
W P H GI GNET DEEAK+AI + E+ E+K+ KK
Sbjct: 24 LTWTPGHEGIKGNETEDEEAKKAITDGSSTAEILPPWMKDALPRNISALRQELKLAAKKS 83
Query: 248 YTEEWNTKWVNISPNENKLRKIKNSILPSS 277
+W + S N+ + I S +PSS
Sbjct: 84 ARNKWTS-----SAQYNRTKTIDES-MPSS 107
>gi|427791813|gb|JAA61358.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1000
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATG--AFRSSPVVSLEAET 59
L+ +YK +R L++GC +++ A + L+ L ++ LRL G F ++ V+ LEA T
Sbjct: 782 LLMVYKMYVRPVLEFGCVLFSGAPAYKLRPLVLLEREALRLCLGLPKFVANAVLYLEART 841
Query: 60 GEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNP-LYVRKYENSNMKPTIDGSKNEQGV 118
P L + +++ S NH I+ NP L+ ++ KP I Q +
Sbjct: 842 -PPLLSQFNLLTVQSFLRLYESPSNHAQIVFISNPDLFFSEHWPRFRKPQIVFV---QSL 897
Query: 119 GCALTIPEKDIVKRFGLNKNASIFHAELF 147
+L + +D++ L K+ I + ++F
Sbjct: 898 LDSLNVRIRDVLPMTMLPKSIEIVYHDIF 926
>gi|257146476|emb|CAT00618.1| gag/pol precursor [HIV-1 M_97CD.KMST91]
Length = 1429
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 109 IDG-SKNEQGVGCALTIPEKD---IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG S E +G A + ++ IV G + HA L AL S L +
Sbjct: 1023 VDGASSRETKMGKAGYVTDRGKQKIVSLTGTTNQKAELHAILLALQDSGLEVN------- 1075
Query: 165 LIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 1076 -IVTDSQYALGIIQAQPDRSESELVNQIIEQLIGKEK-VYLSWVPAHKGIGGNEQVDK-- 1131
Query: 223 KQAINNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 1132 ---LVSSGIRKVLFLDGI 1146
>gi|384497762|gb|EIE88253.1| hypothetical protein RO3G_12964 [Rhizopus delemar RA 99-880]
Length = 1059
Score = 40.8 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ + IR KL+YG + + + LN Q+ CLR+ G R+S V L T P+
Sbjct: 780 RLFAAFIRPKLEYGLAIARLTRKDGEE-LNRAQDRCLRMLVGGHRTSSTVVLRHITNLPS 838
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 839 MTFRADTL 846
>gi|242825941|ref|XP_002488542.1| hypothetical protein TSTA_109660 [Talaromyces stipitatus ATCC
10500]
gi|218712360|gb|EED11786.1| hypothetical protein TSTA_109660 [Talaromyces stipitatus ATCC
10500]
Length = 337
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-----KA 164
DGS + G+G A+ K G + +++ EL + +L + + C +A
Sbjct: 16 DGSGFDNGIGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQPCDDNPHEA 75
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEELS-----STESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + V W P H G+ GNE
Sbjct: 76 TIYTDNQAAIRATCQPGRSSGQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 135
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 136 ADQLAKLA 143
>gi|331242858|ref|XP_003334074.1| hypothetical protein PGTG_15618 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 235
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+S ++ + LWCP+HVGI NE D+ AK+A
Sbjct: 136 ISVHQASISLLWCPAHVGIPENEKVDQLAKEA 167
>gi|242825397|ref|XP_002488432.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712250|gb|EED11676.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 733
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI----HNELFFDEVKIII 244
R E+L+ PV W P H G+ GNE AD+ AK+A + H L V ++
Sbjct: 575 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLADGRVYKML 634
Query: 245 KKKYTEEWNTK 255
+ +W K
Sbjct: 635 EAGTLTQWREK 645
>gi|443912460|gb|ELU35889.1| RNase H domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 243
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 131 KRFGLNKNASIFHAELFALLQSL-LTIKQLGTCKALIITDSLSCLQAIMNMFHENPL--- 186
K G ++ ++ AE+ L+ L L ++ G +A+ D+ + L + H N L
Sbjct: 24 KYVGSDREHEVYEAEVVGLILGLELLARERGAGEAIFFIDNQAVL-LTLKAGHTNKLGYL 82
Query: 187 -------VKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDE 239
++R +E ++ +E W P H G+ GN+ AD EAK A N L
Sbjct: 83 YAHMDEGIRRARE--ANPGVKLEARWIPGHKGVDGNKRADVEAKLAATPGNNTNTLLPGP 140
Query: 240 VKIII-----------KKKYTEEWNTKWVNISPNENK---LRKIKNS 272
+K I K + EW W+ N + LR I N+
Sbjct: 141 LKKAIPVNPTAAKRERKARMEGEW-ADWIEDEGNPRRTQALRLIDNT 186
>gi|294805668|gb|ADB82817.2| pol protein [Simian immunodeficiency virus]
Length = 1010
Score = 40.8 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 109 IDGSKN-EQGVGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N E G A I E K VK +N + AEL A+L +L + K
Sbjct: 605 VDGAANRESKEGKAGYISERGKQSVKAL---ENTTNQKAELTAVLMALEDSGE----KVN 657
Query: 166 IITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I+TDS Q ++N+ E+P LV+++ ++L + V W P+H G+ GNE D
Sbjct: 658 IVTDS----QYVLNILTEHPTTTEHELVEKIIQQLQKKQE-VYLQWVPAHKGLGGNEQID 712
Query: 220 EEAKQAI 226
+ + I
Sbjct: 713 KLVSKGI 719
>gi|409180259|gb|AFV26266.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 40.8 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q VG A I + KD VK N AEL A L +L Q KA
Sbjct: 604 VDGSCNRQSKVGKAGYITDRGKDRVKILEQTTNQ---QAELEAFLMAL----QDSGPKAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
II DS Q +M + E+ LV ++ EE+ E + W P+H GI GN+ D
Sbjct: 657 IIVDS----QYVMGIVTGCPTESESRLVSQIIEEMIKKEE-IYVAWVPAHKGIGGNQEID 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|427793307|gb|JAA62105.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 970
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAF-RSSPVVSLEAETGEPNL 64
Y + +R +L+Y V++ SS +Q + VQN C R + R++ V +++A P+L
Sbjct: 822 YTTFVRPQLEYASSVWDPHSSTLIQSIEAVQNRCARFIVCNYNRNASVTNMKAALNLPSL 881
Query: 65 DIRRK 69
RRK
Sbjct: 882 ATRRK 886
>gi|242807803|ref|XP_002485032.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715657|gb|EED15079.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 550
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 110 DGSK---NEQGVGCAL-TIPEKDIVK-RFGLNKNASIFHAELFALLQSL---LTIKQLGT 161
DGS+ G G AL +P + +F AEL + +L L + LG
Sbjct: 195 DGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQPLGP 254
Query: 162 CKALI----ITDSLSCL-----QAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGI 212
L+ D L QA++ H R E+L+ PV W P H G+
Sbjct: 255 IWVLLDAQNAIDRLKSARPGPGQALVLRAH------RAVEKLAMRGQPVTIQWVPGHSGV 308
Query: 213 AGNETADEEAKQAINNDV 230
GNE AD+ AK+A +
Sbjct: 309 VGNEQADQAAKRAASKQT 326
>gi|417517|sp|P32542.1|POL_EIAVC RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 625 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 676
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGICGNQLA 731
Query: 219 DEEAK 223
DE AK
Sbjct: 732 DEAAK 736
>gi|130595|sp|P11204.1|POL_EIAV9 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 625 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 676
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGICGNQLA 731
Query: 219 DEEAK 223
DE AK
Sbjct: 732 DEAAK 736
>gi|323838|gb|AAB59862.1| pol polyprotein [Equine infectious anemia virus]
Length = 1138
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 617 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 668
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 669 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGICGNQLA 723
Query: 219 DEEAK 223
DE AK
Sbjct: 724 DEAAK 728
>gi|290466009|gb|ADD25352.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 40.8 bits (94), Expect = 0.66, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 18/121 (14%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEF 203
LQ++L Q I+TDS Q M + H P LV ++ EEL E V
Sbjct: 642 LQAILMALQDSGQDVNIVTDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-VYL 696
Query: 204 LWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNE 263
W P+H GI GNE D+ I LF D + ++ E++++ W ++ +
Sbjct: 697 SWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--XAQEDHEKYHSNWKAMASDF 749
Query: 264 N 264
N
Sbjct: 750 N 750
>gi|222538259|gb|ACM63211.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRF-GLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N +QG +T + +++ G + A L AL +S +
Sbjct: 589 VDGAANRESKQGKAGYVTDRGRQKIRKLEGTTNQKAELEAVLLALEESGKNVN------- 641
Query: 165 LIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L I ++ PLV+++ EE+++ E V W P+H GI GNE D+
Sbjct: 642 -IVTDSQYVLGIIAASPDQSDSPLVQKIIEEMTTKEK-VYLAWVPAHKGIGGNEEIDK 697
>gi|9944518|gb|AAG02702.1|AF247394_2 pol protein [Equine infectious anemia virus]
Length = 1146
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 625 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 676
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGICGNQLA 731
Query: 219 DEEAK 223
DE AK
Sbjct: 732 DEAAK 736
>gi|116208494|ref|XP_001230056.1| hypothetical protein CHGG_03540 [Chaetomium globosum CBS 148.51]
gi|88184137|gb|EAQ91605.1| hypothetical protein CHGG_03540 [Chaetomium globosum CBS 148.51]
Length = 812
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+ +P+ +LE
Sbjct: 501 VYTKCIRSTLAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKHTPIRNLE 560
Query: 57 AETGEPNLD 65
ET P LD
Sbjct: 561 TETWVPPLD 569
>gi|242794525|ref|XP_002482393.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718981|gb|EED18401.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 523
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
R E+L+ PV W P H G+ GNE AD+ AK+A + F+ + + K+
Sbjct: 288 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPG---FEHLSLAYVKRA 344
Query: 249 TEEWN----TKWVNISPNENKLRKIKNSILP 275
E ++W I+ + + R + +P
Sbjct: 345 CMEARRTAVSEWARINAVQGRHRDGRVYKMP 375
>gi|9929862|dbj|BAB12104.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 26/127 (20%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTI--KQLGTCK 163
T G +N +G+ +T K KR G + H AE A+ +L KQ+
Sbjct: 627 TDGGKQNGEGIAAYVTSNGKTKQKRLG-----PVTHQVAERMAIQMALEDTRDKQIN--- 678
Query: 164 ALIITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNE 216
I+TDS C + I P+++ ++E+ V F W P H GI GN+
Sbjct: 679 --IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGIYGNQ 731
Query: 217 TADEEAK 223
ADE AK
Sbjct: 732 LADEAAK 738
>gi|321448045|gb|EFX61292.1| hypothetical protein DAPPUDRAFT_122319 [Daphnia pulex]
Length = 675
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 140 SIFHAELFALLQSLLTIKQLGTC--KALIITDSLSCLQAIMNM-FHENPLVKRVQE---E 193
SIF A++ A+ Q+L + C +A+I +DS S + AI + EN + +E
Sbjct: 459 SIFTAKVTAIYQALKLFYDMDDCPPEAIIYSDSSSAIIAISSNSLSENEAITATREIIAS 518
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN---NDVIHNELFFDEVK 241
L S+ + W PSH GI GNE D A N + +HN LF E++
Sbjct: 519 LKSSGTRTRLTWIPSHTGIEGNERTDRLAATECNTQDGEEVHNSLFPKEME 569
>gi|222538206|gb|ACM63166.1| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRF-GLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N +QG +T + +++ G + A L AL +S +
Sbjct: 589 VDGAANRESKQGKAGYVTDRGRQKIRKLEGTTNQKAELEAVLLALEESGKNVN------- 641
Query: 165 LIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L I ++ PLV+++ EE+++ E V W P+H GI GNE D+
Sbjct: 642 -IVTDSQYVLGIIAASPDQSDSPLVQKIIEEMTTKEK-VYLAWVPAHKGIGGNEEIDK 697
>gi|407916627|gb|EKG09972.1| hypothetical protein MPH_12934 [Macrophomina phaseolina MS6]
Length = 209
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAIN 227
PV WCP H+GI GNE AD+ AK AI
Sbjct: 32 PVVTRWCPGHMGITGNEEADQLAKAAIG 59
>gi|315272245|gb|ADU02696.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 612 TDGGKQNEEGVAAYVTSNGKTKQKRLGPATHQT---AERIAIQMALEDTEE---TLINIV 665
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 666 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 723
>gi|315272175|gb|ADU02636.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 612 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 665
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 666 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 723
>gi|242816856|ref|XP_002486830.1| hypothetical protein TSTA_052420 [Talaromyces stipitatus ATCC
10500]
gi|218713295|gb|EED12719.1| hypothetical protein TSTA_052420 [Talaromyces stipitatus ATCC
10500]
Length = 476
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-----KA 164
DGS + G+G A+ K G + +++ EL + +L + + C +A
Sbjct: 155 DGSGFDNGIGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQPCDDNPHEA 214
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEELS-----STESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + V W P H G+ GNE
Sbjct: 215 TIYTDNQAAIRATCQPGRSSGQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 274
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 275 ADQLAKLA 282
>gi|315272266|gb|ADU02714.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|384496192|gb|EIE86683.1| hypothetical protein RO3G_11394 [Rhizopus delemar RA 99-880]
Length = 308
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R +L+YG + ++ S LQ + QN CLR G S + + +P
Sbjct: 21 RFYSQIVRPQLEYGLAI-SAVKSRELQKIESCQNQCLRRIFGGTSRSSIKVMLHLVNQPT 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVR 98
+ R IL + ++ +T+ + + R L Y+R
Sbjct: 80 MKERIHILQAKFLLRTIDTPDDTLMFRLLP--YIR 112
>gi|409180099|gb|AFV26122.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q G +T +D VK N AEL A L + +K G KA
Sbjct: 604 VDGSCNRQSKEGKAGYITDRGRDRVKTLEQTTNQ---QAELEAFL---MAVKDSGP-KAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I+ DS Q +M + EN +V ++ EE+ ++ + W P+H GI GN+ D
Sbjct: 657 IVVDS----QYVMGIVAGQPTESENSIVNQIIEEMIK-KTAIYVAWVPAHKGIGGNQEVD 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|343474808|emb|CCD13634.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 357
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 97 VRKYENSNMKPTIDGS---KNEQGVGCALTIPEKDIVKR--FGLNKNASIFHAELFAL-- 149
V ++ + + + DGS G G AL P++ +R G A + AE A+
Sbjct: 4 VVRFRDFDYQVWTDGSVVLDVSSGAG-ALVYPKEGRRERVVLGAGSLARSYRAECVAMEA 62
Query: 150 ----LQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQE---ELSSTESP 200
L ++ + Q + + TDSLS L A+ E+ +++RV + +L
Sbjct: 63 WLKRLVDVIELNQTHRTRVVAFTDSLSLLMALSTGPAVVEDAILRRVWDLILQLVRLRVS 122
Query: 201 VEFLWCPSHVGIAGNETADEEAKQA 225
V F + SH G+ NE AD+EA+Q
Sbjct: 123 VNFQFVFSHCGVPRNEAADKEAEQG 147
>gi|218304263|emb|CAN87025.1| pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 27/181 (14%)
Query: 86 PNIMRTLNPLYVRKYENSNMKP-------TIDGSKN---EQGVGCALTIPEKDIVKRFGL 135
P+ P R++ ++P IDGS N ++G T ++ +V
Sbjct: 590 PDTEHVSTPFLAREWYKLVLEPLPEVETYYIDGSANRDSKEGKAGYWTKSKEKVVSV--- 646
Query: 136 NKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEE 193
+N + EL AL +L + G K IITDS + + + E+PLV+ + E
Sbjct: 647 -QNTTNQQTELIALKLAL----EDGGQKMNIITDSQYVMGIVKDHPTMSESPLVQEIIEL 701
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK--KYTEE 251
L E + W P+H GI GN D I + + +F + + I+ KY +
Sbjct: 702 LKGKEE-IYIDWVPAHKGIGGNTEIDRLVSAGIRSKI----MFLENITPAIESHTKYHQG 756
Query: 252 W 252
W
Sbjct: 757 W 757
>gi|315272196|gb|ADU02654.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|22532283|gb|AAM97877.1|AF492623_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 40.4 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E VG A + +K K L + + AEL A+ +L Q + I+
Sbjct: 596 VDGAANRETKVGKAGYVTDKGRQKVVTLTETTNQ-KAELEAIHLAL----QDSGLEVNIV 650
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS CL I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 651 TDSQYCLGIIQAQPDKSESELVSQIIEQLIKKEK-VYLXWVPAHKGIGGNEQVDKLVSSG 709
Query: 226 INNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 710 -----IRKVLFLDGID--KAQEEHERYHSNWRAMASDFN 741
>gi|315272182|gb|ADU02642.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 612 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 665
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 666 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 723
>gi|403411627|emb|CCL98327.1| predicted protein [Fibroporia radiculosa]
Length = 766
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 16/135 (11%)
Query: 110 DGS--KNEQGVGCA-LTIPEKDIV--KRFGLNKNASIFHAELFALLQSLLTIKQLG--TC 162
DGS N GCA LT+ + + +FG + A IF AE+ AL + + + Q C
Sbjct: 254 DGSLVPNGSRSGCAWLTMSGHNYLNSGKFGAGRCA-IFDAEMMALARGIHSALQGAPQDC 312
Query: 163 KALII-TDSLSCLQAIMNM-FHENPLV-----KRVQEELSSTE-SPVEFLWCPSHVGIAG 214
L++ D+ L I+N + LV ++V E L +E + LW PSH +
Sbjct: 313 THLVLCVDNAGALSKILNCEMGPSQLVSILAAEKVMEFLQRSERHHISLLWVPSHKDVPP 372
Query: 215 NETADEEAKQAINND 229
NE DE AK A+ ++
Sbjct: 373 NEFVDELAKSALESE 387
>gi|384496873|gb|EIE87364.1| hypothetical protein RO3G_12075 [Rhizopus delemar RA 99-880]
Length = 1058
Score = 40.4 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ S IR KL+YG + + + LN Q+ CLR+ G R++ V L T P+
Sbjct: 780 RLFASFIRPKLEYGLAIAQLTRKDYDE-LNRAQDRCLRMLVGGHRTASTVVLRHITNLPS 838
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 839 MSFRADTL 846
>gi|384489998|gb|EIE81220.1| hypothetical protein RO3G_05925 [Rhizopus delemar RA 99-880]
Length = 1058
Score = 40.4 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ S IR KL+YG + + + LN Q+ CLR+ G R++ V L T P+
Sbjct: 780 RLFASFIRPKLEYGLAIAQLTRKDYDE-LNRAQDRCLRMLVGGHRTASTVVLRHITNLPS 838
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 839 MSFRADTL 846
>gi|300811104|gb|ADK35834.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS C + I P+++ ++ + V F W P H GI GN+ ADE
Sbjct: 667 TDSYYCWKNITEGLGLEGPGSPWWPIIQNIR-----AKEMVYFAWVPGHKGIYGNQLADE 721
Query: 221 EAK 223
K
Sbjct: 722 ATK 724
>gi|306478249|gb|ADM89499.1| pol protein [Human immunodeficiency virus 1]
Length = 710
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 341 LQAILLALQDSGVEVNIVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWV 398
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 399 PAHKGIGGNEQVDK 412
>gi|254728701|gb|ACT79529.1| pol protein [Simian immunodeficiency virus]
Length = 287
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTES 199
AEL A+L +L K+ K I+TDS L LQ + ++PLV+ + +EL + E+
Sbjct: 24 QAELQAILLALKDAKE----KVNIVTDSQYVLGILQGTPDQ-SDSPLVEXIIQELMNKEA 78
Query: 200 PVEFLWCPSHVGIAGNETADE 220
V W P+H GI GNE D+
Sbjct: 79 -VYLNWVPAHKGIGGNEEVDK 98
>gi|14160854|gb|AAK12968.1| pol [Human immunodeficiency virus 1]
Length = 1004
Score = 40.4 bits (93), Expect = 0.79, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 635 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESGLVNQIIEELIKKEK-VYLAWV 692
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E+++ W+ I+ + N
Sbjct: 693 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHINWIPITSDSN 743
>gi|130596|sp|P03371.1|POL_EIAVY RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1145
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 624 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 675
Query: 166 IITDSLSCLQAIMNMFH----ENP---LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I +NP +++ ++E+ V F W P H GI GN+ A
Sbjct: 676 IVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREK-----EIVYFAWVPGHKGIYGNQLA 730
Query: 219 DEEAK 223
DE AK
Sbjct: 731 DEAAK 735
>gi|67527094|ref|XP_661584.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|40740261|gb|EAA59451.1| hypothetical protein AN3980.2 [Aspergillus nidulans FGSC A4]
gi|259481439|tpe|CBF74958.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 342
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 10/125 (8%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKRFG---LNKNASIFHAELFALLQSL---LTIKQLGTC 162
+D + QG G T+ I+ G ++ AE+ ++ L L +G
Sbjct: 53 LDSLQTGQGAGFGYTVYFGPILVTKGHGPAGPRTEVYDAEIIGAVEGLRAALGQPCMGYS 112
Query: 163 KALIIT-DSL---SCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
L+I D+L S L + H + L + + + P++ W P H GIAGN+ A
Sbjct: 113 TQLVILLDNLAAASLLASYRPTLHRHRLSESFGQLATQPWKPLQVCWIPGHSGIAGNKLA 172
Query: 219 DEEAK 223
D+ AK
Sbjct: 173 DKLAK 177
>gi|315272189|gb|ADU02648.1| pol polyprotein [Equine infectious anemia virus]
Length = 1133
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 612 TDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 665
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 666 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 723
>gi|380486847|emb|CCF38429.1| hypothetical protein CH063_09515 [Colletotrichum higginsianum]
Length = 402
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 144 AELFALLQSLLTIKQLGTC-----KALIITDSLSCLQAIMNMFH-----ENPLVKR-VQE 192
AE+FA++ +L T L + + TD C AI + + LVKR V
Sbjct: 125 AEVFAVVAALETAALLSHLMPELRQVTVFTD---CKDAIRKLIAAAENASDTLVKRAVAA 181
Query: 193 ELSSTESPVEFL--WCPSHVGIAGNETADEEAKQA 225
L+ V L WCP HVGI GN ADE AK+A
Sbjct: 182 SLALDAKGVRALVRWCPGHVGIEGNSKADELAKEA 216
>gi|222428266|gb|ACM49943.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGL---NKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + +K K L + HA L AL S L +
Sbjct: 597 VDGAANRETKLGKAGYVTDKGRQKAVPLIDTTNQKTELHAILLALQDSGLEVN------- 649
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 650 -IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDKL 706
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 707 VSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|38491744|gb|AAR22127.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 40.4 bits (93), Expect = 0.83, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 166 IITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I+TDS Q M + H P LV R+ E+L + E V W P+H GI GNE D
Sbjct: 651 IVTDS----QYAMGIIHAQPDKSESELVSRIIEQLITKEK-VYLSWVPAHKGIGGNEQVD 705
Query: 220 EEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ + ++ I LF D + ++ E +++ W ++ + N
Sbjct: 706 K-----LVSNGIRKVLFLDGID--KAQEEHERYHSNWRTMASDFN 743
>gi|38142451|gb|AAN18271.2| pol protein [Simian immunodeficiency virus]
Length = 1002
Score = 40.4 bits (93), Expect = 0.83, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A I +K K L +N + AEL AL +L +Q + I+
Sbjct: 596 VDGAANRETKKGKAGYITDKGKQKIISL-ENTTNQQAELGALYLALQDSEQ----QVNIV 650
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + E+ LV ++ EEL + V W P+H GI GNE D+
Sbjct: 651 TDSQYVLGIIQSQPDHSESELVNQIIEELIKKDK-VYLSWVPAHKGIGGNEQVDKLVSSG 709
Query: 226 I 226
I
Sbjct: 710 I 710
>gi|290629|gb|AAA43004.1| reverse transcriptase [Equine infectious anemia virus]
Length = 987
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 466 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 517
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 518 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGICGNQLA 572
Query: 219 DEEAK 223
DE AK
Sbjct: 573 DEAAK 577
>gi|3248895|gb|AAC24015.1| polymerase polyprotein [Equine infectious anemia virus]
gi|3248902|gb|AAC24021.1| polymerase polyprotein [Equine infectious anemia virus]
Length = 1146
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 625 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 676
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 677 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGIYGNQLA 731
Query: 219 DEEAK 223
DE AK
Sbjct: 732 DEAAK 736
>gi|384497714|gb|EIE88205.1| hypothetical protein RO3G_12916 [Rhizopus delemar RA 99-880]
Length = 308
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R +L+YG + ++ S LQ + QN CLR G S + + +P
Sbjct: 21 RFYSQIVRPQLEYGLAI-SAVKSRELQKIESCQNQCLRRIFGGTSRSSIKVMLHLVNQPT 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVR 98
+ R IL + ++ +T+ + + R L Y+R
Sbjct: 80 MKERIHILQAKFLLRTIDTPDDTLMFRLLP--YIR 112
>gi|310791578|gb|EFQ27105.1| hypothetical protein GLRG_02276 [Glomerella graminicola M1.001]
Length = 227
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 144 AELFALLQSLLTIKQLGTC-----KALIITDSLSCLQAIMNMFHE--NPLVKRV---QEE 193
AELFA++ L T L + + TD + +M + +PLVKR E
Sbjct: 93 AELFAVVTGLETAALLAHLMPELRRVTVFTDCQDSIHTLMAAAAKASDPLVKRAVAASVE 152
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
L + V WCP HV I GNE A+ A++
Sbjct: 153 LVARGVRVLVRWCPGHVAIEGNEKANGLARE 183
>gi|384494726|gb|EIE85217.1| hypothetical protein RO3G_09927 [Rhizopus delemar RA 99-880]
Length = 1058
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ S IR KL+YG + + + LN Q+ CLR+ G R++ V L T P+
Sbjct: 780 RLFASFIRPKLEYGLAIAQLTRKDYDE-LNRAQDRCLRMLVGGHRTASTVVLRHITNLPS 838
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 839 MSFRADTL 846
>gi|384501506|gb|EIE91997.1| hypothetical protein RO3G_16708 [Rhizopus delemar RA 99-880]
Length = 993
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ S IR KL+YG + + + LN Q+ CLR+ G R++ V L T P+
Sbjct: 780 RLFASFIRPKLEYGLAIAQLTRKDYDE-LNRAQDRCLRMLVGGHRTASTVVLRHITNLPS 838
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 839 MSFRADTL 846
>gi|14530228|gb|AAK65962.1|AF286236_2 pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLW 205
A LQ+L Q +A I+TDS L I E+ LV ++ E+L E V W
Sbjct: 633 AELQALYLALQDSGLEANIVTDSQYALGIIQAQPDSSESELVNQIIEQLIKKEK-VYLSW 691
Query: 206 CPSHVGIAGNETADE 220
P+H GI GNE AD+
Sbjct: 692 VPAHKGIGGNEQADK 706
>gi|9626532|ref|NP_056902.1| pol polyprotein [Equine infectious anemia virus]
gi|2801512|gb|AAC82600.1| pol polyprotein [Equine infectious anemia virus]
gi|2905988|gb|AAC03761.1| pol [Equine infectious anemia virus]
Length = 1138
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFH--AELFALLQSLLTIKQLGTCKAL 165
T G +N +G+ +T + KR G + H AE A+ +L + +
Sbjct: 617 TDGGKQNGEGIAAYVTSNGRTKQKRLG-----PVTHQVAERMAIQMALEDTRDK---QVN 668
Query: 166 IITDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS C + I P+++ ++E+ V F W P H GI GN+ A
Sbjct: 669 IVTDSYYCWKNITEGLGLEGPQSPWWPIIQNIREK-----EIVYFAWVPGHKGIYGNQLA 723
Query: 219 DEEAK 223
DE AK
Sbjct: 724 DEAAK 728
>gi|117910806|emb|CAL30194.1| pol protein [Simian immunodeficiency virus]
Length = 512
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRF-GLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N +QG +T + +++ G + A L AL +S +
Sbjct: 211 VDGAANRESKQGKAGYVTDRGRQKIRKLEGTTNQKAELEAVLLALEESGKNVN------- 263
Query: 165 LIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L I ++PLV+++ EE+++ E V W P+H GI GNE D+
Sbjct: 264 -IVTDSQYVLGIIAASPDQSDSPLVQKIIEEMTTKEK-VYLAWVPAHKGIGGNEEIDK 319
>gi|322703804|gb|EFY95407.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 1861
Score = 40.4 bits (93), Expect = 0.89, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)
Query: 77 AKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLN 136
+K S E+ ++T+ P + Y + ++ P G G A+ + I + G
Sbjct: 1651 SKEESAEDFVQWLQTIPPFTLIVYSDGSLSPN-----GAAGYGYAVHQSGRSICQGAGRL 1705
Query: 137 KNASIFHAELFALLQSL---LTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQ-- 191
A +F AE L+ L L + Q T K + D+++ + + E+ +RV
Sbjct: 1706 GPAEVFDAEAKGALEGLKAALRLPQSVTQKIFVCLDNIAAARCLRGKPSESS--QRVFLT 1763
Query: 192 -EELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ L+ T E W P H I GNE AD AK
Sbjct: 1764 FQALAKTHRMTEVRWIPGHTKIPGNEQADVLAK 1796
>gi|427798087|gb|JAA64495.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 440
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 165 LIITDSL-SCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+IITDS +C + +PL + ++ +P +W P H G+ GNE AD A+
Sbjct: 359 IIITDSRRACAHYLAGEI--SPLASHILRRAAADPTPKRIIWAPGHQGLRGNEAADAAAR 416
>gi|290466019|gb|ADD25361.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 40.4 bits (93), Expect = 0.91, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q M + H P LV ++ EEL E V
Sbjct: 634 AELQAILLALQDSGQEVNIVTDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-V 688
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISP 261
W P+H GI GNE D+ I LF D ++ + E +++ W ++
Sbjct: 689 YLSWVPAHKGIGGNEQIDKLVSSG-----IRKVLFLDGIE--KAQDDHERYHSNWRAMAS 741
Query: 262 NEN 264
+ N
Sbjct: 742 DFN 744
>gi|156061383|ref|XP_001596614.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980]
gi|154700238|gb|EDN99976.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 735
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 117 GVGCALTIPEKDIVKRFGLN--KNASIFHAELFALLQSLL---TIKQLGTCKALIITD-- 169
G+G A+ +P I + +N N +++ EL + +++ +I Q G K I +D
Sbjct: 437 GIGIAVILPNGRISHQETINIGVNQLVYNDELLGVTKAIEYTNSIAQPGN-KFKIYSDNQ 495
Query: 170 -SLSCLQAIMNMFHENPLVK--RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
L L+ ++ ++ +K +V E + + + + W P H + GNE AD AK+A
Sbjct: 496 AGLFRLKTPSDLPGQSCQIKAIKVAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEAT 555
Query: 227 NNDVIHNELFFDEVKIIIKKKYTEEW 252
+E + + + IK+ +E W
Sbjct: 556 KIPSSSHETSYAFIGMDIKRMKSENW 581
>gi|156055132|ref|XP_001593490.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980]
gi|154702702|gb|EDO02441.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1581
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 1242 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 1301
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 1302 PEVRLNAGIKQYAFRLLKISPSHP 1325
>gi|384486834|gb|EIE79014.1| hypothetical protein RO3G_03719 [Rhizopus delemar RA 99-880]
Length = 929
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R++L+YG + N +S + L QN+CLR G S V + T P
Sbjct: 642 RFYTQIVRAQLEYGLAI-NKITSLLAKKLEDAQNICLRRIFGGSSRSSVKVMLHLTKLPT 700
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+ R IL + ++ ++L++ +
Sbjct: 701 MQERTYILQAQFLLRSLTLPD 721
>gi|76446025|gb|ABA42883.1| pol protein [Human immunodeficiency virus 1]
Length = 405
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEF 203
LQ++L Q + I+TDS Q ++ + H +P LV ++ EEL E V
Sbjct: 32 LQAVLMALQDSGQEVNIVTDS----QYVLGIIHSHPDKSESELVSQIIEELIKKER-VYL 86
Query: 204 LWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
W P+H GI GNE D+ + + I LF D ++
Sbjct: 87 SWVPAHKGIGGNEQVDK-----LVSSGIRRVLFLDGIE 119
>gi|384491961|gb|EIE83157.1| hypothetical protein RO3G_07862 [Rhizopus delemar RA 99-880]
Length = 1021
Score = 40.4 bits (93), Expect = 0.96, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y + +R K +YG + + ++ L+ + +Q+ CLRL G R+S ++ T P+
Sbjct: 744 RLYATFVRPKFEYGLAI-SRLTATDLKSIENLQDRCLRLLVGGHRTSSTTIIKHITTLPS 802
Query: 64 LDIRRKILSSNY 75
+ R +L + Y
Sbjct: 803 MRHRIDVLITRY 814
>gi|294947382|ref|XP_002785360.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239899133|gb|EER17156.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1627
Score = 40.0 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 110 DGSKNEQGVGCA-LTIPEKDIVKR--FGLNKNASIFHAELFALLQSL--LTIKQLGTCKA 164
DGSK G A L + E ++V+R F L + A+I EL A+ ++L L+ +
Sbjct: 1352 DGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSHSAHRGIEW 1411
Query: 165 LIITDSLSCLQAIMNM-FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
L+ TDS + ++ I E + R L V+ WCP H G+ NE D+ A
Sbjct: 1412 LLFTDSQASIRTIRGREATERSAIARDIAHLG-LHVQVQLNWCPGHEGVQWNEAVDQLA 1469
>gi|242765602|ref|XP_002341008.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724204|gb|EED23621.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII-IKKK 247
+ E+L+ PV W P H GI GNE AD+ AK+A + F+ + + +++
Sbjct: 357 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPG---FEHLSLAHVRRA 413
Query: 248 YTEEWN---TKWVNISPNENKLR 267
TE +KW I+ + + R
Sbjct: 414 CTEARRAAVSKWAQINAVQGRHR 436
>gi|242807844|ref|XP_002485040.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715665|gb|EED15087.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 839
Score = 40.0 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 357 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 393
>gi|242814698|ref|XP_002486420.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714759|gb|EED14182.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 874
Score = 40.0 bits (92), Expect = 0.97, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 639 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 675
>gi|156039972|ref|XP_001587093.1| hypothetical protein SS1G_12122 [Sclerotinia sclerotiorum 1980]
gi|154696179|gb|EDN95917.1| hypothetical protein SS1G_12122 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 654
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 558 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 617
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 618 PEVRLNAGIKQYAFRLLKISPSHP 641
>gi|29243009|emb|CAD70671.1| Pol protein [Simian immunodeficiency virus - mon]
Length = 936
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPV 201
A L+++L Q G I+TDS Q +M + E+P+V+++ ++L + V
Sbjct: 558 AELEAVLLALQNGPASMNIVTDS----QYVMGILASKPEVSESPIVEKIIQQLLGKKQ-V 612
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H GI GNE D+ Q I
Sbjct: 613 YLSWVPAHKGIGGNEEVDKLVSQGI 637
>gi|425774322|gb|EKV12630.1| C6 transcription factor, putative [Penicillium digitatum PHI26]
Length = 579
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 175 QAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
Q I+ +++ R + ++ + V W P+HVG++GNE AD EAK A
Sbjct: 335 QYILTRIYDHIRAIRSRNQVQQEPTRVTIRWIPAHVGVSGNEYADTEAKGA 385
>gi|384483910|gb|EIE76090.1| hypothetical protein RO3G_00794 [Rhizopus delemar RA 99-880]
Length = 929
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R++L+YG + N +S + L QN+CLR G S V + T P
Sbjct: 642 RFYTQIVRAQLEYGLAI-NKITSLLAKKLEDAQNICLRRIFGGSSRSSVKVMLHLTKLPT 700
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+ R IL + ++ ++L++ +
Sbjct: 701 MQERTYILQAQFLLRSLTLPD 721
>gi|326480183|gb|EGE04193.1| hypothetical protein TEQG_03224 [Trichophyton equinum CBS 127.97]
Length = 210
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R +EL V+F W P+HVG+ GNE AD+ AK+A
Sbjct: 10 RELDELRRLGWEVQFRWIPAHVGVPGNEEADQLAKEA 46
>gi|306823522|ref|ZP_07456897.1| ribonuclease H [Bifidobacterium dentium ATCC 27679]
gi|309802938|ref|ZP_07697039.1| ribonuclease HI [Bifidobacterium dentium JCVIHMP022]
gi|304553229|gb|EFM41141.1| ribonuclease H [Bifidobacterium dentium ATCC 27679]
gi|308220405|gb|EFO76716.1| ribonuclease HI [Bifidobacterium dentium JCVIHMP022]
Length = 400
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 18/101 (17%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ +I TDS ++C ++ + +N L+
Sbjct: 55 GELCAVLEALRA--HPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALI 112
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
K + E+S PV+F+W H G AGNE DE A+ ++
Sbjct: 113 KAIDAEISQRPGPVKFVWVKGHAGNAGNEKVDELARTYADD 153
>gi|242765569|ref|XP_002341001.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724197|gb|EED23614.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 805
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 35/176 (19%)
Query: 110 DGSK---NEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL---LTIKQLGTCK 163
DGS+ G G + +P + +F AEL + +L L + LG
Sbjct: 491 DGSRLDTGRAGAGEHVEVP---------MGHGHEVFDAELMGVATALEWALERQPLGPIW 541
Query: 164 ALIITDSLSCLQAIMNMFHENP-----LVKRVQ---EELSSTESPVEFLWCPSHVGIAGN 215
L AI + P LV R E+L+ PV W P H GI GN
Sbjct: 542 VF-----LDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGN 596
Query: 216 ETADEEAKQAINNDVIHNELFFDEVKII-IKKKYTEEWN---TKWVNISPNENKLR 267
E AD+ AK+A + F+ + + +++ TE +KW I+ + + R
Sbjct: 597 EQADQAAKRAASKQTAPG---FEHLSLAHVRRACTEARRAAVSKWAQINAVQGRHR 649
>gi|300811125|gb|ADK35852.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K KR G + + E A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSSGKTKQKRLGPVTHQT---TERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
Query: 224 QAINNDVI 231
I D++
Sbjct: 725 --ITEDIM 730
>gi|242826977|ref|XP_002488743.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712135|gb|EED11562.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 768
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 21/167 (12%)
Query: 111 GSKNEQGVGCALTIPE--KDIVKRFGLNKNASIFHAEL----FALLQSLLTIKQ-LGTCK 163
GS + +G ++ IP K + G ++++ AE FAL +L Q + T K
Sbjct: 421 GSGYQGYIGTSMVIPAFGKQRTECIGTEGTSTVYAAEACGIKFALETALQIADQNIQTKK 480
Query: 164 ALIITDSLSCLQAIMN--MFHENPLVKRVQEELS---STESPVEFLWCPSHVGIAGNETA 218
+I +DS + L+ +MN M + + L + V W P H GI GNE A
Sbjct: 481 LVIFSDSQAALRTLMNPRMVSGQTYIYDCIDSLRKCIDEDIDVTLRWIPGHEGIPGNEAA 540
Query: 219 DEEA---------KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D A +Q + D+ + + K I++ + W +W
Sbjct: 541 DRAAKRAALIGARRQIVPGDIGNWTILAAAAKRRIRQSTKDAWEKQW 587
>gi|37728012|gb|AAR02377.1| pol protein [Simian immunodeficiency virus]
Length = 1017
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 75 YIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKD---IVK 131
+ A I P+I +P +R++ P I+G+ G A ++ V
Sbjct: 563 WWADNWQINWVPDIEAVYSPHLLRQWYTLVQDP-IEGAPTYYVDGAANRTSKEGKAGYVT 621
Query: 132 RFGLNKNASIFH-----AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHEN 184
FG K ++ AEL A+L +L + G + IITDS L + + E+
Sbjct: 622 NFGARKAVTLEQTTNQKAELEAVLLAL----RDGPPQMNIITDSQYVLGILASCPEISES 677
Query: 185 PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
P+V+ + +EL + V W P+H GI GNE D Q I
Sbjct: 678 PIVEAIIQELLKKDQ-VFLSWVPAHKGIGGNEEVDRLVGQGI 718
>gi|67524507|ref|XP_660315.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|40743929|gb|EAA63113.1| hypothetical protein AN2711.2 [Aspergillus nidulans FGSC A4]
gi|259486378|tpe|CBF84167.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 666
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 26/137 (18%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFG---LNKNASIFHAELFALLQSLLTIKQLG------ 160
DGS+ QG G I I+ G ++ AE+ ++ L LG
Sbjct: 368 DGSRTGQGAGYGYAIYFGPILVTKGHGPAGPRTEVYDAEIMGAVEGLRA--ALGQPCVGY 425
Query: 161 TCKALIITDSLSCLQAIMNMFHENPLVKRVQEE--------------LSSTESPVEFLWC 206
+ + +I+ D+L+ +++ + P + E L+ P++ W
Sbjct: 426 STQLVILLDNLAA-ASLLASYRPTPHRHGLSESFGQLATQWLEAPSILTRPRKPLQVRWI 484
Query: 207 PSHVGIAGNETADEEAK 223
P H GIAGNE AD+ AK
Sbjct: 485 PGHSGIAGNELADKLAK 501
>gi|242814632|ref|XP_002486407.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714746|gb|EED14169.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 454
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
R E+L+ PV W P H GI GNE AD+ AK+A +
Sbjct: 219 RAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAAS 257
>gi|195419952|ref|XP_002060737.1| GK21231 [Drosophila willistoni]
gi|194156822|gb|EDW71723.1| GK21231 [Drosophila willistoni]
Length = 126
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E P +
Sbjct: 18 IYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLEIHEELNMPWV 77
Query: 65 DIRRKILSSNYIAKTLSIENHPN 87
LS Y+ + ++ HPN
Sbjct: 78 QDEIARLSKAYLER---LDRHPN 97
>gi|156062764|ref|XP_001597304.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980]
gi|154696834|gb|EDN96572.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1387
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 898 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 957
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 958 PEVRLNAGIKQYAFRLLKISPSHP 981
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 1170 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 1229
Query: 249 TEEWNT 254
+E W T
Sbjct: 1230 SENWIT 1235
>gi|384499343|gb|EIE89834.1| hypothetical protein RO3G_14545 [Rhizopus delemar RA 99-880]
Length = 267
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R +L+YG + ++ S LQ + QN CLR G S + + +P
Sbjct: 21 RFYSQIVRPQLEYGLAI-SAVKSRELQKIESCQNQCLRRIFGGTSRSSIKVMLHLVNQPT 79
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVR 98
+ R IL + ++ +T+ + + R L Y+R
Sbjct: 80 MKERIHILQAKFLLRTIDTPDDTLMFRLLP--YIR 112
>gi|156056779|ref|XP_001594313.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980]
gi|154701906|gb|EDO01645.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 625 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEVALCP 684
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 685 PEVRLNTGIKQYAFRLLKISPSHP 708
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 897 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 956
Query: 249 TEEW 252
+E W
Sbjct: 957 SENW 960
>gi|82280741|sp|O91080.3|POL_HV1YF RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
gi|3288390|emb|CAA06810.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1449
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q I+TDS Q M + H P LV ++ EEL E V
Sbjct: 1074 AELQAILMALQESGRDVNIVTDS----QYAMGIIHSQPDKSESELVSQIIEELIKKER-V 1128
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
W P+H GI GNE D+ + + I LF D ++
Sbjct: 1129 YLSWVPAHKGIGGNEQVDK-----LVSSGIRKILFLDGIE 1163
>gi|306478005|gb|ADM89377.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 24/155 (15%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E VG A + K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L LQA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 495 -IVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDKL 551
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 552 VSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|383859911|ref|XP_003705435.1| PREDICTED: armadillo repeat-containing protein 4-like [Megachile
rotundata]
Length = 999
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 92 LNPLYVRKY-ENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALL 150
L P Y++ + ++S M+ T+ S + P D LN + IF AE +L
Sbjct: 719 LYPGYIQIFTDDSKMEGTVSTS-------ASCVCPLLDCSFTRSLNHASLIFSAECHGIL 771
Query: 151 QSLLTIKQLGTCKALIITDSLSCLQAI-MNMFHENP--LVKRVQEELSSTE---SP---V 201
++ + +S S L+A+ +F + L+K ++EEL++ E SP +
Sbjct: 772 MAVNLANK--------AKNSFSVLEALDGRVFCQRSFSLLKEIKEELNAFETLASPGRRI 823
Query: 202 EFLWCPSHVGIAGNETADEEAKQAIN 227
F+W PS+ GI NE AD AK A N
Sbjct: 824 AFVWIPSYRGILNNERADAAAKLASN 849
>gi|156034873|ref|XP_001585855.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980]
gi|154698775|gb|EDN98513.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 731
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 243 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLTLRKILGVFKTSPIKPMEIEAALCP 302
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 303 PEVRLNAGIKQYAFRLLKISPSHP 326
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 515 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 574
Query: 249 TEEW 252
+E W
Sbjct: 575 SENW 578
>gi|156032517|ref|XP_001585096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980]
gi|154699358|gb|EDN99096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1326
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 837 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 896
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 897 PEVRLNAGIKQYAFRLLKISPSHP 920
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 1109 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 1168
Query: 249 TEEW 252
+E W
Sbjct: 1169 SENW 1172
>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 334
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCK----------ALIITDSLSCLQAIM---NMFHENPL 186
S+ AEL +L ++ + ++ + + A I++DS+S LQAI N + +
Sbjct: 53 SVHAAELIGILHAIEIVNKVASERRRLHGEQVRLATILSDSMSALQAIQTPGNKSGQRII 112
Query: 187 VKRVQEELSSTESPV--EFLWCPSHVGIAGNETADEEAKQAINNDVIHNEL-FFDEVKII 243
+Q ++S V W P H GN++AD AK+A H K
Sbjct: 113 HAILQAAINSKTHGVTIRLQWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSREKAF 172
Query: 244 IKKKYTEEWNTKWVNISPNENKLRKIKNSI 273
++K ++W + N LR I N++
Sbjct: 173 VRKNIYDQWEKEXKESKEGGN-LRTIDNAL 201
>gi|384495542|gb|EIE86033.1| hypothetical protein RO3G_10744 [Rhizopus delemar RA 99-880]
Length = 984
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y + +R K +YG + + ++ L+ + +Q+ CLRL G R+S ++ T P+
Sbjct: 707 RLYATFVRPKFEYGLAI-SRLTATDLKSIENLQDRCLRLLVGGHRTSSTTIIKHITTLPS 765
Query: 64 LDIRRKILSSNY 75
+ R +L + Y
Sbjct: 766 MRHRIDVLITRY 777
>gi|331215471|ref|XP_003320416.1| hypothetical protein PGTG_01328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 205
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
S++ +P++ WCP+HVGI N+ D AK+A ++
Sbjct: 117 SNSTTPIQLFWCPAHVGIPENKKVDSLAKEATSD 150
>gi|88186440|gb|ABD39703.1| pol protein [Simian immunodeficiency virus]
Length = 1004
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + ++ K L +N + AEL+A+ L ++ G + I+
Sbjct: 594 VDGAANRESKKGRAGYVTDRGRYKTRDL-ENTTNQQAELWAID---LALRDSG-AQVNIV 648
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS + LQ + + ++P+V+++ ++L+ ++ + W P+H GI GNE D+
Sbjct: 649 TDSQYVMGVLQGLPDQ-SDSPIVEQIIQQLTQ-KAAIYLAWVPAHKGIGGNEEVDK 702
>gi|395455290|gb|AFN61990.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
P+H GI GNE D+ I LF D + + +KY W T
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGIDKAQEDHEKYHSNWRT 736
>gi|26000275|gb|AAN75308.1| pol protein [Human immunodeficiency virus 1]
Length = 994
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q +A I+
Sbjct: 588 VDGAANRETKIGKAGYVTDKGRQKIVTLNETTNQ-KAELQAIQLAL----QDSGSEANIV 642
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E + W P+H GI GNE D+
Sbjct: 643 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-IYLSWVPAHKGIGGNEQVDKLVSS 700
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 701 G-----IRKVLFLDGID--KAQEEHEKYHSNW 725
>gi|19335964|emb|CAC38430.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + +G A + EK K L + + AEL A+L +L K+ I+
Sbjct: 1029 VDGAANRDTKLGKAGYVTEKGRQKIIKLEETTNQ-RAELMAVLLALQDSKET----VNIV 1083
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
DS L I + E+ LV+++ EEL+ E V W P+H GI GNE D+
Sbjct: 1084 QDSQYVLGIISSQPTQSESSLVQQIIEELTKKEQ-VYLTWVPAHKGIGGNEKIDK 1137
>gi|440484572|gb|ELQ64628.1| LOW QUALITY PROTEIN: hypothetical protein OOW_P131scaffold00595g3
[Magnaporthe oryzae P131]
Length = 482
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 135 LNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN-----------MFHE 183
L +F AE L+ L + DS S + + FHE
Sbjct: 67 LGGPCHVFDAETVGALRGLEAADANPGDTIWVCVDSASVIWGLRGSASLSSQWAYIRFHE 126
Query: 184 NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNET----ADEEAKQAINND 229
+ EEL T V WCP H GI GNE ADE AK + D
Sbjct: 127 ------LVEELKDTGVSVRIRWCPGHEGIEGNEKADRLADEGAKGPADTD 170
>gi|87083832|gb|ABD19493.1| pol protein [Simian immunodeficiency virus]
gi|387119172|gb|AFJ52162.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1013
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q ++ + H P LV ++ EEL E +
Sbjct: 638 AELQAVLMALQDAGQEVNIVTDS----QYVLGIIHSQPDKSESELVNQIIEELIKKER-I 692
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISP 261
W P+H GI GNE D+ I LF D + ++ E +++ W ++
Sbjct: 693 YLSWVPAHKGIGGNEQIDKLVSTG-----IRKVLFLDGID--KAQEEHERYHSNWKAMAS 745
Query: 262 NEN 264
+ N
Sbjct: 746 DFN 748
>gi|384483802|gb|EIE75982.1| hypothetical protein RO3G_00686 [Rhizopus delemar RA 99-880]
Length = 146
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ + IR KL+YG + + + LN Q+ CLR+ G R+S V L T P+
Sbjct: 21 RLFAAFIRPKLEYGLAIARLTRKDG-EELNRAQDRCLRMLIGGHRTSSTVVLRHITNLPS 79
Query: 64 LDIR 67
+ R
Sbjct: 80 MTFR 83
>gi|156052491|ref|XP_001592172.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980]
gi|154704191|gb|EDO03930.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 625 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 684
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 685 PEVRLNAGIKQYAFRLLKISPSHP 708
Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 897 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 956
Query: 249 TEEW 252
+E W
Sbjct: 957 SENW 960
>gi|15055097|gb|AAK82844.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESP 200
AEL A+L L +K G +A I+TDS L L A + +NP+V+ + ++ + E+
Sbjct: 645 AELEAIL---LALKDSGP-RANIVTDSQYALGILSATPDR-SDNPIVREIINQMIAKEA- 698
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN 228
V W P+H GI GNE D+ + I
Sbjct: 699 VYLAWVPAHKGIGGNEQIDKLVSKGIRQ 726
>gi|47027389|gb|AAT08769.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEF 203
LQ++L Q + I+TDS Q + + H +P LV ++ EEL E V
Sbjct: 639 LQAILLALQDSGQEVNIVTDS----QYALGIIHSHPDKSESELVSQIIEELIKKER-VYL 693
Query: 204 LWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNE 263
W P+H GI GNE D+ I LF D ++ ++ E +++ W ++ +
Sbjct: 694 SWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGIE--KAQEDHERYHSNWRAMASDF 746
Query: 264 NKLRKIKNSILPS 276
N + I+ S
Sbjct: 747 NLPSVVAKEIVAS 759
>gi|353227190|emb|CCA77710.1| hypothetical protein PIIN_10861, partial [Piriformospora indica DSM
11827]
Length = 530
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 188 KRVQEELSSTE--------SPVEFLWCPSHVGIAGNETADEEAKQAINN 228
KR QE + +++ + + W P H GI GNE AD+EAK+AI +
Sbjct: 388 KRRQELVEASDDETRINRSTQITLTWVPGHEGIEGNEAADKEAKKAITD 436
>gi|242765587|ref|XP_002341005.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724201|gb|EED23618.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1091
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 856 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 892
>gi|242824212|ref|XP_002488213.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
gi|218713134|gb|EED12559.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
Length = 874
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 577 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 613
>gi|134140572|gb|ABO61045.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPV 201
AEL A+L L +K+ G I+TDS L + + E+ PLV+ + ++L + E+ V
Sbjct: 633 AELEAVL---LALKE-GPPSMNIVTDSQYVLGIVASQPQESTSPLVEEIIQQLLTKEA-V 687
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
W P+H GI GNE D+ I LF ++++ K+ E++++ W
Sbjct: 688 YLSWVPAHKGIGGNEDVDKLVSHG-----IRQVLFMEQIE--PAKEDHEKYHSNW 735
>gi|343426443|emb|CBQ69973.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 2595
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 20/161 (12%)
Query: 110 DGSKNEQGVGCALTIP----EKDIVKRFGLNKNASIFHAELFALLQSL-LTIKQLGTCKA 164
DGS++ GVG + E +++ + IF AEL A+ + L I++ G+ A
Sbjct: 2093 DGSRSTSGVGAGAVVIRPGLEPQVIETPLSSDGFDIFEAELEAIGKGLNACIREYGSPPA 2152
Query: 165 ------LIITDSLSCLQAIMNMFHENPLVKRVQEELSSTE--------SPVEFLWCPSHV 210
L TDS + LQ + + + + Q S + V+ W H
Sbjct: 2153 SRPSTILCFTDSCAALQRLTTSWSSDRRSGQRQALFISAACATLRRLGAEVQLRWVAGHH 2212
Query: 211 GIAGNETADEEAKQAINNDVIHNELFFDEVKI-IIKKKYTE 250
G+ GNE AD A+ A + + + ++V I ++K + E
Sbjct: 2213 GVPGNERADLAARTAASAERTNEATLAEQVSISVVKARLAE 2253
>gi|55275197|gb|AAV49415.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAIHLALQASGSEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEKVDKLVSAG-----IRKVLFLDGID--QAQEEHEKYHSNWRAMASDFNLP 744
Query: 267 RKIKNSILPS 276
+ I+PS
Sbjct: 745 PVVAKEIVPS 754
>gi|71148676|gb|AAZ28934.1| polyprotein [Phanerochaete chrysosporium RP-78]
Length = 1121
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 15/129 (11%)
Query: 140 SIFHAELFALLQSLLTIKQLGTCKALII---TDSLSCLQAIMNMFHENP----------L 186
S + AE+ AL +L + T +A I D+ + + I+ P
Sbjct: 650 SPYDAEMMALYMGILAACRTNTLQAKTIHVFADNKAAITGILKPTASGPSQRLSVLTCQA 709
Query: 187 VKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK 246
V++ E+ E WCP HVGI NETAD EAK A E+ + I
Sbjct: 710 VRKWLED--DAERTFHTHWCPGHVGIDLNETADIEAKAAAKEYPQPAEMSLSMARQITTA 767
Query: 247 KYTEEWNTK 255
+ E W +
Sbjct: 768 RELELWRKQ 776
>gi|386642406|emb|CCD41788.1| pol protein, partial [Simian immunodeficiency virus]
Length = 658
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N +QG +T K+ VK N AEL A+L L +K G K
Sbjct: 352 VDGAANRNSKQGKAGYVTNRGKEKVKELEETTNQK---AELEAVL---LALKDSGP-KVN 404
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L+A F ++P+V + +L E+ V W P+H GI GNE D+
Sbjct: 405 IVTDSQYVYGILEA-QPEFSDSPIVTEIINQLIGKEA-VYLSWVPAHKGIGGNEEVDKLV 462
Query: 223 KQAINNDVIHNELFFDEVK 241
+ I LF D ++
Sbjct: 463 SRGIR-----QVLFLDGIE 476
>gi|242765583|ref|XP_002341004.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724200|gb|EED23617.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 110 DGSK---NEQGVGCALTI----PEKDIVKRFGLNKNASIFHAELFALLQSL---LTIKQL 159
DGS+ G G AL P + + G A F AEL + +L L + L
Sbjct: 64 DGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEA--FDAELMGVATALEWALERQPL 121
Query: 160 GTCKALI----ITDSLSCL-----QAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHV 210
G L+ D L QA++ H R E+L+ PV W P H
Sbjct: 122 GPIWVLLDAQNAIDRLKSARPGPGQALVLRAH------RAVEKLAMRGQPVTIQWVPGHS 175
Query: 211 GIAGNETADEEAKQAIN 227
G+ GNE AD+ AK+A +
Sbjct: 176 GVVGNEQADQAAKRAAS 192
>gi|14582845|gb|AAK69683.1|AF349681_2 pol protein [Simian immunodeficiency virus]
Length = 1022
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N G +T K+ VK N AEL A+L L +K G K
Sbjct: 615 VDGAANRNSKLGKAGYVTDRGKEKVKELEDTTNQK---AELEAVL---LALKDSGK-KVN 667
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
++TDS + E+PLV+++ E+L E V W P+H GI GNE D+
Sbjct: 668 LVTDSQYVFGILAGSPDTSESPLVQQIIEQLIGKEE-VYLSWVPAHKGIGGNEQVDK--- 723
Query: 224 QAINNDVIHNELFFDEVK 241
+ ++ I LF D ++
Sbjct: 724 --LVSNGIRQVLFLDGIE 739
>gi|116199821|ref|XP_001225722.1| hypothetical protein CHGG_08066 [Chaetomium globosum CBS 148.51]
gi|88179345|gb|EAQ86813.1| hypothetical protein CHGG_08066 [Chaetomium globosum CBS 148.51]
Length = 377
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L Q+ LR+ GAF+ +P+ +LE
Sbjct: 66 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQSKSLRIVAGAFKHTPIRNLE 125
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 126 TETWVPPLDL 135
>gi|353244253|emb|CCA75678.1| hypothetical protein PIIN_09668 [Piriformospora indica DSM 11827]
Length = 626
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 188 KRVQEELSSTE--------SPVEFLWCPSHVGIAGNETADEEAKQAINN 228
KR QE + +++ + + W P H GI GN+ ADEEAK+AI +
Sbjct: 554 KRRQELVEASDDETRINRSTQITLTWVPGHEGIEGNKAADEEAKKAITD 602
>gi|289187228|gb|ADC92193.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q +A I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 578 LQAILLALQDSGVEANIVTDSQYALGIIQAQPDR-SESELVSQIIEQLIKKEK-VYLAWV 635
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 636 PAHKGIGGNEQVDK 649
>gi|163643979|emb|CAN85199.1| pol protein [Simian immunodeficiency virus - wrc]
Length = 220
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 130 VKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLV 187
+KR L +N + AEL AL +L + G K IITDS + + + E+PLV
Sbjct: 1 IKRLSL-QNTTNQQAELTALKLAL----EDGGEKMNIITDSQYVMGIVKDHPTISESPLV 55
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK- 246
+ + E L E + W P+H GI GN D+ I + + +F + + I
Sbjct: 56 QEIIELLKRKEE-IYIEWVPAHKGIGGNTEIDKLVSAGIRSKI----MFLENITPAIDSH 110
Query: 247 -KYTEEWNT 254
KY + W +
Sbjct: 111 TKYHQGWKS 119
>gi|393226542|gb|EJD34284.1| hypothetical protein AURDEDRAFT_37261, partial [Auricularia
delicata TFB-10046 SS5]
Length = 72
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 169 DSLSCLQAIMNMFHENP-------LVKRVQEELSSTES-PVEFLWCPSHVGIAGNETADE 220
D+ S ++AI+ H P +R + L++ S V W PSH+GI GNE AD+
Sbjct: 8 DNSSSVEAILQE-HPGPSQEFSITFCERAHDFLAADASHEVTVSWVPSHIGIRGNERADQ 66
Query: 221 EAKQA 225
AKQA
Sbjct: 67 LAKQA 71
>gi|392586550|gb|EIW75886.1| hypothetical protein CONPUDRAFT_169130 [Coniophora puteana
RWD-64-598 SS2]
Length = 265
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 186 LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
L +R+Q +L V F W H GI GNE ADEEAK A
Sbjct: 46 LARRLQTQLQDVG--VVFTWLAGHRGIEGNERADEEAKNA 83
>gi|156060559|ref|XP_001596202.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980]
gi|154699826|gb|EDN99564.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 117 GVGCALTIPEKDIVKR--FGLNKNASIFHAELFALLQSLL---TIKQLGTCKALIITD-- 169
G+G A+ +P I + ++ N +++ EL + +++ +I Q G K I +D
Sbjct: 189 GIGIAVILPNGRISHQETINIDVNQLVYNGELLEVTKAIEYTNSIAQPGN-KFKIYSDNQ 247
Query: 170 -SLSCLQAIMNMFHENPLVKRVQ--EELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
L L+ ++ ++ +K ++ E + + + + W P H + GNE AD AK+A
Sbjct: 248 AGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEAT 307
Query: 227 NNDVIHNELFFDEVKIIIKKKYTEEW 252
+E + + + IK+ +E W
Sbjct: 308 KIPSSSHETSYASIGMDIKRMKSENW 333
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 8 SLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIR 67
+ + S DYG ++ + +IL +QNL LR G F++SP+ +E E ++R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 68 RKILSSNYIAKTLSIE-NHP 86
Y + L I +HP
Sbjct: 62 LNAGIKQYAFRLLKISPSHP 81
>gi|331242414|ref|XP_003333853.1| hypothetical protein PGTG_15276 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 313
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFF 237
P+ WCP H GI NE AD AK+A + +++ F
Sbjct: 115 PIRLFWCPGHEGIEANEKADSLAKKAAGGEDGSSDISF 152
>gi|156056264|ref|XP_001594056.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980]
gi|154703268|gb|EDO03007.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1584
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 1095 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCP 1154
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 1155 PEVRLNAGIKQYAFRLLKISPSHP 1178
>gi|242825388|ref|XP_002488430.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712248|gb|EED11674.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1742 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1778
>gi|156045249|ref|XP_001589180.1| hypothetical protein SS1G_09813 [Sclerotinia sclerotiorum 1980]
gi|154694208|gb|EDN93946.1| hypothetical protein SS1G_09813 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 229
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 108 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAA 164
>gi|242794486|ref|XP_002482384.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718972|gb|EED18392.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1025
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
R ++L+ PV W P H GI GNE AD+ AK+A
Sbjct: 159 RAAKKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 195
>gi|116203311|ref|XP_001227467.1| hypothetical protein CHGG_09540 [Chaetomium globosum CBS 148.51]
gi|88178058|gb|EAQ85526.1| hypothetical protein CHGG_09540 [Chaetomium globosum CBS 148.51]
Length = 370
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 11 RSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
RS L YG ++ A + L QN LR+ GAF+S+P+ +LE ET P
Sbjct: 40 RSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLETETWVP 99
Query: 63 NLDI 66
LD+
Sbjct: 100 PLDL 103
>gi|242825350|ref|XP_002488422.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712240|gb|EED11666.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 1763 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 1799
>gi|315272238|gb|ADU02690.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G +NE+GV +T K +R G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQNEEGVAAYVTSNGKTKQRRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS C + I P+++ ++ + V F W P H GI GN+ ADE
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQNIR-----AKEMVYFAWVPGHKGIYGNQLADE 721
Query: 221 EAK 223
K
Sbjct: 722 ATK 724
>gi|242825438|ref|XP_002488440.1| reverse transcriptase [C. elegans], putative [Talaromyces
stipitatus ATCC 10500]
gi|218712258|gb|EED11684.1| reverse transcriptase [C. elegans], putative [Talaromyces
stipitatus ATCC 10500]
Length = 1129
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-----KA 164
DGS + G+G A+ + K G + +++ EL + +L + + C +A
Sbjct: 808 DGSGFDNGIGAAVYLSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQPCDDNPHEA 867
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEEL-----SSTESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + + V W P H G+ GNE
Sbjct: 868 TIYTDNQAAIRATCQPGRSSGQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 927
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 928 ADQLAKLA 935
>gi|114152122|sp|Q1A249.3|POL_SIVEK RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1448
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 22/139 (15%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K +++ + AEL A+L +L Q + I+
Sbjct: 1038 VDGAANRETKLGKAGFVTDRGRQKVTSISETTNQ-QAELQAVLMALQDAGQ----EVNIV 1092
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q ++ + H P LV ++ EEL E + W P+H GI GNE D+
Sbjct: 1093 TDS----QYVLGIIHSQPDKSESELVNQIIEELIKKER-IYLSWVPAHKGIGGNEQIDK- 1146
Query: 222 AKQAINNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 1147 ----LVSTGIRKVLFLDGI 1161
>gi|331243639|ref|XP_003334462.1| hypothetical protein PGTG_15891 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 207
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN 228
+ F+WCP H + GNE ADE AK+A+ +
Sbjct: 136 MSFVWCPGHRDVLGNELADELAKEALTD 163
>gi|301508610|gb|ADK78271.1| pol protein [Simian immunodeficiency virus]
Length = 1017
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N G +T K+ VK N AEL A+L L +K G +
Sbjct: 610 VDGAANRNSKLGKAGYITDRGKEKVKELEDTTNQK---AELEAVL---LALKDSGK-RVN 662
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I+TDS Q + + E+PLV+++ E+L E V W P+H GI GNE D
Sbjct: 663 IVTDS----QYVFGILAGSPDTSESPLVQQIIEQLIGKEE-VYLSWVPAHKGIGGNEEVD 717
Query: 220 EEAKQAINNDVIHNELFFDEVKIIIKK--KYTEEW 252
+ + I LF D ++ ++ KY W
Sbjct: 718 KLVSRG-----IRQVLFLDGIEKAQEEHDKYHSNW 747
>gi|322702335|gb|EFY94003.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 19/156 (12%)
Query: 77 AKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGV-GCALTIPEKDIVKRFGL 135
AK + E + +++PL V Y DGS +E+G G TI + R G
Sbjct: 142 AKKEAAEGFNAWLESVSPLTVIVYS--------DGSLSEKGAAGYGFTIHQNGRSLRQGA 193
Query: 136 NK--NASIFHAELFALLQSL---LTIKQLGTCKALIITDSLS---CLQAIMNMFHENPLV 187
+ A +F AE+ L L L + Q + K ++ D+++ CL+ + + +
Sbjct: 194 GRLGPAEVFDAEVRGALDGLKAALRLPQSASQKIVVCLDNIAAAGCLRGQPSDSSQGVFL 253
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ L+ + W P H IAGNE AD AK
Sbjct: 254 --AFQALAKRHRQTDIRWIPGHSNIAGNEQADVLAK 287
>gi|86357978|ref|YP_469870.1| ribonuclease H protein [Rhizobium etli CFN 42]
gi|86282080|gb|ABC91143.1| probable ribonuclease H protein [Rhizobium etli CFN 42]
Length = 165
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 128 DIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII-TDSLSCLQAIMNMFH---- 182
+I FG ++++ EL A+LQ+++ I T +A I +DS+ ++ + H
Sbjct: 39 EIASSFGGVRDSANNSMELTAVLQAVMWINSEATGEAATIWSDSIYAVKGCNDRRHIWKN 98
Query: 183 ------------------ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
L K V +LS + V WC H GIAGNE ADE A
Sbjct: 99 NGWKKSGGNGNARSRTIANTELWKAVDLQLSQN-ALVTIAWCKGHSGIAGNERADELA 155
>gi|322781071|gb|EFZ10148.1| hypothetical protein SINV_03648 [Solenopsis invicta]
Length = 305
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQI-LNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
+YKS++RS LDYG +Y S + SLQ+ L Q L +R A G S+P + AE+
Sbjct: 159 LYKSMVRSVLDYGLYIY-SPNIKSLQLNLERTQFLGIRTALGYRNSTPNNVIIAESKVVL 217
Query: 64 LDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQ 116
L R L+ N+ +K + KY S+++ ++D KN++
Sbjct: 218 LRERALTLAKNFCSK------------------IYKYGESSIRISLDNLKNKE 252
>gi|290466036|gb|ADD25375.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q M + H P +V ++ EEL E V
Sbjct: 639 AELQAILMALQESEKEVNIVTDS----QYAMGIIHAQPDKSESEVVSQIIEELIKKER-V 693
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISP 261
W P+H GI GNE D+ I LF D + ++ E +++ W ++
Sbjct: 694 YLSWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEDHERYHSNWRAMAS 746
Query: 262 NEN 264
+ N
Sbjct: 747 DFN 749
>gi|384497318|gb|EIE87809.1| hypothetical protein RO3G_12520 [Rhizopus delemar RA 99-880]
Length = 749
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R++++YG + N +++ ++L QN CLR GA + + + + P
Sbjct: 590 RFYAQIVRARIEYGLAI-NRLTASQTKVLEDAQNDCLRRIYGASKRASTKVMRHLSRLPT 648
Query: 64 LDIRRKILSSNYIAKTLSI 82
+ R IL + ++ ++ ++
Sbjct: 649 MKERLNILQAQFLFRSFTL 667
>gi|341571551|gb|AEK79388.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N + +G A + K K LN + HA L AL S L +
Sbjct: 603 VDGAANRDTKLGKAGYVTNKGRQKVVSLNDTTNQKTELHAILLALQDSGLEVN------- 655
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 656 -IVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK- 711
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ ++ I LF D + ++ E+++ W ++ + N
Sbjct: 712 ----LVSNGIRKVLFLDGID--KAQEEHEKYHNNWRAMASDFN 748
>gi|242794494|ref|XP_002482386.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
gi|218718974|gb|EED18394.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
Length = 1125
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+ E+L+ PV W P H GI GNE AD+ AK+A
Sbjct: 890 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRA 926
>gi|258627374|ref|ZP_05722158.1| Ribonuclease HI [Vibrio mimicus VM603]
gi|258580412|gb|EEW05377.1| Ribonuclease HI [Vibrio mimicus VM603]
Length = 156
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP 185
EK + + + L N + E+ A + +L T+K+ C+ ++ TDS Q I H
Sbjct: 32 EKTLARGYRLTTNNRM---EMLAAVVALQTLKE--PCRVILTTDSQYVRQGITQWIHNWK 86
Query: 186 LVK-RVQE-------------ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231
L R + + + VE+ W H G NE DE A+QA N
Sbjct: 87 LRGWRTADKKPVKNADLWQALDRETARHQVEWRWVKGHAGHRENEMCDELARQAAENPTE 146
Query: 232 HNELFFDEVK 241
+ + E K
Sbjct: 147 DDTGYQPEAK 156
>gi|156050917|ref|XP_001591420.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980]
gi|154692446|gb|EDN92184.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1660
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 1171 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPIEIEAALCP 1230
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 1231 PEVRLNAGIKQYAFRLLKISPSHP 1254
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 1443 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 1502
Query: 249 TEEW 252
+E W
Sbjct: 1503 SENW 1506
>gi|384493103|gb|EIE83594.1| hypothetical protein RO3G_08299 [Rhizopus delemar RA 99-880]
Length = 785
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y ++R++L+YG + N +S + L QN+CLR G S V + T P
Sbjct: 524 RFYTQIVRAQLEYGLAI-NKITSLLAKKLEDAQNICLRRIFGGSSRSSVKVMLHLTKLPT 582
Query: 64 LDIRRKILSSNYIAKTLSIEN 84
+ R IL + ++ ++L++ +
Sbjct: 583 MQERIYILQAQFLLRSLTLPD 603
>gi|116199763|ref|XP_001225693.1| hypothetical protein CHGG_08037 [Chaetomium globosum CBS 148.51]
gi|88179316|gb|EAQ86784.1| hypothetical protein CHGG_08037 [Chaetomium globosum CBS 148.51]
Length = 485
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 10 IRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
IRS L YG ++ A + L QN LR+ GAF+S+P+ +LE ET
Sbjct: 179 IRSALAYGASSFHILTDVGGEPAKKGITKALGKAQNKSLRIVAGAFKSTPIRNLETETWV 238
Query: 62 PNLDI 66
P L++
Sbjct: 239 PPLNL 243
>gi|308542720|gb|ADO34204.1| pol protein [Simian immunodeficiency virus - agm.Sab92018]
Length = 1039
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE--NPLVKRVQEELSSTESPV 201
AEL A+L L ++ G K I+TDS + + E N LV+++ EEL E+ V
Sbjct: 664 AELEAVL---LALRSSGP-KVNIVTDSQYAMGIVAGEPTESDNILVQQIIEELIRKEA-V 718
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
W P+H G+ GNE D+ Q I LF D ++
Sbjct: 719 YISWVPAHKGVGGNEEIDKLVSQGIR-----QVLFLDRIE 753
>gi|11385953|gb|AAG35040.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + + AEL A+ +L Q K I+
Sbjct: 541 VDGASNRETKIGKAGYVTDRGRQKAVSLTETTNQ-KAELHAIQLAL----QDSGSKVNIV 595
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E+ V W P+H GI GNE D+
Sbjct: 596 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEN-VYLSWVPAHKGIGGNEQVDK 649
>gi|344311687|gb|AEN04366.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKIGKAGYVTDKGRQKIVTLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVSQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDK 550
>gi|353247791|emb|CCA77176.1| hypothetical protein PIIN_11158 [Piriformospora indica DSM 11827]
Length = 321
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 188 KRVQE--ELSSTES------PVEFLWCPSHVGIAGNETADEEAKQAINN 228
KR QE E S E+ + W P H GI GN+ ADEEAK+AI +
Sbjct: 98 KRRQELVEASDDETRINQSTQITLTWVPGHEGIKGNKAADEEAKKAITD 146
>gi|336242097|ref|XP_003342951.1| hypothetical protein SMAC_09848 [Sordaria macrospora k-hell]
Length = 343
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV--KIIIKKKYTEEWNTKWVN 258
V+ W P H GI GNE ADE AK + NE + + K+K ++ W
Sbjct: 238 VDVRWVPGHKGITGNEIADELAKAGAEGGEVVNEGLATTAHSRRLAKRKARTDFKAWWAA 297
Query: 259 ISPNENKLRKIKNSILP 275
P ++ SI P
Sbjct: 298 NKPESYADYRLGVSIKP 314
>gi|49182266|gb|AAT57633.1| pol protein [Simian immunodeficiency virus]
Length = 815
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSST 197
AEL A+L L +K+ G K I+TDS Q + + NP +V+ + ++L S
Sbjct: 551 AELQAML---LALKESGP-KVNIVTDS----QYVYGILIGNPTDTTNQIVEEIIQQLLSK 602
Query: 198 ESPVEFLWCPSHVGIAGNETADEEAKQAI 226
E+ V W P+H GI GNE D+ Q I
Sbjct: 603 EA-VYLAWLPAHKGIGGNEQVDKLVSQGI 630
>gi|449143589|ref|ZP_21774412.1| Ribonuclease HI [Vibrio mimicus CAIM 602]
gi|449080587|gb|EMB51498.1| Ribonuclease HI [Vibrio mimicus CAIM 602]
Length = 156
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP 185
EK + + + L N + E+ A + +L T+K+ C+ ++ TDS Q I H
Sbjct: 32 EKTLARGYRLTTNNRM---EMLAAVVALQTLKE--PCRVILTTDSQYVRQGITQWIHNWK 86
Query: 186 LV-------KRVQE-------ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231
L K V+ + + VE+ W H G NE DE A+QA N
Sbjct: 87 LRGWKTADKKPVKNADLWQALDRETARHQVEWRWVKGHAGHRENEMCDELARQAAENPTE 146
Query: 232 HNELFFDEVK 241
+ + E K
Sbjct: 147 DDTGYQPEAK 156
>gi|261336140|dbj|BAI44772.1| pol-like protein [Alternaria alternata]
Length = 1295
Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVK--RFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL-- 165
DGS E +G A P + G + ++++ AEL + +L ++ +
Sbjct: 987 DGSGIEGEIGSAALCPLTQQTRSVHMGSDTESTVYAAELQGISLALQIAQEYASRNGARR 1046
Query: 166 ---IITDSLSCLQAIMNMFHENPL-----VKRVQEELSSTESPVEFLWCPSHVGIAGNET 217
I TD+ + + +I + + + R EL V W P+HVGI GNE
Sbjct: 1047 DVAIYTDNQAAVWSIAKVEGRSGAYILAEIARQVRELQDNGRTVTVRWIPAHVGIPGNEA 1106
Query: 218 ADEEAKQA 225
D+ AK+A
Sbjct: 1107 VDKAAKEA 1114
>gi|380473899|emb|CCF46062.1| reverse transcriptase, partial [Colletotrichum higginsianum]
Length = 198
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN 228
V WCP H GIAGNE AD AK+A
Sbjct: 20 VYIWWCPGHTGIAGNEEADALAKEACRQ 47
>gi|315272203|gb|ADU02660.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERMAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|87042744|gb|ABD16379.1| pol protein [Feline immunodeficiency virus]
Length = 322
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP-LVKRV-QEELSSTESPVEFL- 204
A +Q+LL + G + IITDS Q IMN+ ++ P L++ + QE L E V
Sbjct: 31 AEVQALLLALRAGPEEMNIITDS----QYIMNIINQQPDLMEGIWQEVLDELEKKVAIFI 86
Query: 205 -WCPSHVGIAGNETADE 220
W P H GI GNE D+
Sbjct: 87 DWVPGHKGIPGNEEVDK 103
>gi|321457344|gb|EFX68432.1| hypothetical protein DAPPUDRAFT_114543 [Daphnia pulex]
Length = 154
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 192 EELSSTESPVEFLWCPSHVGIAGNETAD-EEAKQAINND---VIHNELFFDE----VKII 243
E L ST + W PSHVGI GNE AD A ++ +N+ I+N+L +E +KI
Sbjct: 5 EGLRSTGTKATVYWIPSHVGIDGNEKADILAATESSSNEPIYKIYNKLSVNEQCIKLKIH 64
Query: 244 IKKKYTEE 251
++ K+ EE
Sbjct: 65 LQTKFLEE 72
>gi|427791105|gb|JAA61004.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 950
Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 161 TCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
T + I++DS + +++ N P + + S VE +W P H G+AGNE A +
Sbjct: 775 THASCIVSDSKTAIRSFTNGLISQPAHRILTSTPLSRRRRVEIIWAPGHSGLAGNERAHD 834
Query: 221 EAKQAIN 227
A+ ++
Sbjct: 835 AARALVH 841
>gi|222428399|gb|ACM50049.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQNSGLEVNIVTDSQYALGIIQAQPDK-SESALVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF DE+ ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDEIN--KAQEEHEKYHSNWRAMASDFN 742
>gi|49887108|gb|AAT68795.1| pol protein [Simian immunodeficiency virus]
Length = 1007
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 109 IDGSKN-EQGVGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N E +G A + E K VK +N + AEL A+L +L + G K
Sbjct: 602 VDGAANRESKLGKAGYVTEWGKQSVKCL---ENTTNQKAELEAILLAL----EEGPSKMN 654
Query: 166 IITDSLSCLQAIMNMFHE--NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS L I+ E + +V++V + L E + W P+H GI GN+ D+
Sbjct: 655 IVTDSQYALGIILEHPSETEHKIVEKVIQALQGKEQ-IYLAWVPAHKGIGGNDQVDKLVS 713
Query: 224 QAI 226
+ I
Sbjct: 714 KGI 716
>gi|315272210|gb|ADU02666.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|154270463|ref|XP_001536086.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409890|gb|EDN05278.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 378
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 192 EELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNE 234
E +S VEF W P+H GI GNE AD+ AK+A H
Sbjct: 123 ERANSQGLDVEFYWIPAHHGIEGNELADKLAKEATGCKQRHGR 165
>gi|449664722|ref|XP_004205988.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Hydra magnipapillata]
Length = 531
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLD 65
Y LIRS+L+Y +Y S L+ L+ +Q C+R+ R++ L E L
Sbjct: 410 YTGLIRSQLEYASILYLGQSKAQLKRLDVIQKQCVRIVCHKPRNTHSAPLLEELKLDTLG 469
Query: 66 IRRKILSSNYIAKTLSIENHPNI 88
RRK+ ++ + S HP++
Sbjct: 470 ERRKVHATKIVMSASSGVCHPSL 492
>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
Length = 1186
Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 192 EELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
+EL + V W P+HVGI GNE AD+ AK+A
Sbjct: 1084 QELQNKGLSVTVRWIPAHVGIEGNEAADQAAKEA 1117
>gi|392872153|gb|AFM85346.1| polymerase polyprotein, partial [Simian immunodeficiency virus]
Length = 297
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++L Q + I+TDS L LQ + E+PLV + E L E+ V
Sbjct: 31 AELQAVLLALQDSGSRVNIVTDSQYVLGVLQGSPDQ-SESPLVTEIIENLIQKEA-VYLN 88
Query: 205 WCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 89 WVPAHKGIGGNEEVDK 104
>gi|13383738|gb|AAK21112.1|AF327878_2 pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|315272252|gb|ADU02702.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|116204317|ref|XP_001227969.1| hypothetical protein CHGG_10042 [Chaetomium globosum CBS 148.51]
gi|88176170|gb|EAQ83638.1| hypothetical protein CHGG_10042 [Chaetomium globosum CBS 148.51]
Length = 613
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + + L QN LR+ GAF+S+ + +LE
Sbjct: 459 VYTKCIRSALAYGASSFHIPTDVGGEPVKKDITKALGKAQNKSLRIVVGAFKSTLIRNLE 518
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 519 TETWVPPLDL 528
>gi|409407219|ref|ZP_11255670.1| ribonuclease HI protein [Herbaspirillum sp. GW103]
gi|386432970|gb|EIJ45796.1| ribonuclease HI protein [Herbaspirillum sp. GW103]
Length = 153
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 111 GSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
G+ G G L EK+I FG N + EL A++Q+L +K+ C+ ++ T
Sbjct: 23 GNPGRGGWGALLVAGGKEKEI---FGGEPNTTNNRMELMAVIQALNALKR--PCEVVVHT 77
Query: 169 DSLSCLQAIMNMFH--ENPLVKRVQEE------------LSSTESPVEFLWCPSHVGIAG 214
DS + I H + K +E + + VE+ W H G AG
Sbjct: 78 DSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRGHNGHAG 137
Query: 215 NETADEEAKQAINN 228
NE AD+ A + +++
Sbjct: 138 NERADQLANRGVDS 151
>gi|253999158|ref|YP_003051221.1| ribonuclease H [Methylovorus glucosetrophus SIP3-4]
gi|253985837|gb|ACT50694.1| ribonuclease H [Methylovorus glucosetrophus SIP3-4]
Length = 154
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMF-----------HENPLV-KRVQE 192
EL A++++L +K+ C+ I TDS+ + I + P+ + +
Sbjct: 51 ELTAVIRALQALKR--PCQVKIYTDSVYVQKGITEWMTGWKARNWRTSDKKPVKNEDLWR 108
Query: 193 ELSSTESP--VEFLWCPSHVGIAGNETADEEAKQAI 226
EL T P +E+LW H G AGNE AD A Q +
Sbjct: 109 ELDQTVQPHNIEWLWVKGHAGNAGNERADALANQGV 144
>gi|156051540|ref|XP_001591731.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980]
gi|154704955|gb|EDO04694.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 975
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD+ AK+A NE F + + +K+
Sbjct: 738 KAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTVKEYA 797
Query: 249 TEEW 252
+++W
Sbjct: 798 SDQW 801
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P++ +E E G
Sbjct: 492 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPILPMEVEAG 550
>gi|256010803|gb|ACU55258.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 39.3 bits (90), Expect = 2.1, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q K I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 639 LQAILLALQDSGAKVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 696
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ I
Sbjct: 697 PAHKGIGGNEQVDKLVSAGI 716
>gi|315272259|gb|ADU02708.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|300811111|gb|ADK35840.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|300811090|gb|ADK35822.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|300811083|gb|ADK35816.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFHEN-------PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS C + I P+++ ++ + V F W P H GI GN+ ADE
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQNIR-----AKEVVYFAWVPGHKGIYGNQLADE 721
Query: 221 EAK 223
K
Sbjct: 722 ATK 724
>gi|344311824|gb|AEN04434.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLTWVPAHKGIGGNEQVDKLVSR 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|353246588|emb|CCA76851.1| hypothetical protein PIIN_10836 [Piriformospora indica DSM 11827]
Length = 431
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN 228
+ W P H GI GN+ ADEEAK+AI +
Sbjct: 229 ITLTWVPGHEGIEGNKAADEEAKKAITD 256
>gi|341571887|gb|AEK79578.1| pol protein [Simian immunodeficiency virus]
Length = 297
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++L Q K I+TDS L LQ + E+PLV+ + E L + +
Sbjct: 31 AELQAILLALQDSGSKVNIVTDSQYVLGVLQGSPDQ-SESPLVEEIIENLIQKDE-IYLN 88
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
W P+H GI GNE D + ++ D I LF D ++ ++ E++++ W I+ N
Sbjct: 89 WVPAHKGIGGNEEVD----KLVSKD-IRKILFLDGIE--QAQEDHEKFHSNWKAIADEYN 141
>gi|300811097|gb|ADK35828.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLVNIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|258621020|ref|ZP_05716054.1| Ribonuclease HI [Vibrio mimicus VM573]
gi|424807448|ref|ZP_18232856.1| ribonuclease HI [Vibrio mimicus SX-4]
gi|258586408|gb|EEW11123.1| Ribonuclease HI [Vibrio mimicus VM573]
gi|342325390|gb|EGU21170.1| ribonuclease HI [Vibrio mimicus SX-4]
Length = 156
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP 185
EK + + + L N + E+ A + +L T+K+ C+ ++ TDS Q I H
Sbjct: 32 EKTLARGYRLTTNNRM---EMLAAVVALQTLKE--PCRVVLTTDSQYVRQGITQWIHNWK 86
Query: 186 LV-------KRVQE-------ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231
L K V+ + + VE+ W H G NE DE A+QA N
Sbjct: 87 LRGWKTADKKPVKNADLWQALDRETARHQVEWRWVKGHAGHRENEMCDELARQAAENPTE 146
Query: 232 HNELFFDEVK 241
+ + E K
Sbjct: 147 DDTGYQPEAK 156
>gi|242804915|ref|XP_002484469.1| hypothetical protein TSTA_022890 [Talaromyces stipitatus ATCC
10500]
gi|218717814|gb|EED17235.1| hypothetical protein TSTA_022890 [Talaromyces stipitatus ATCC
10500]
Length = 440
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 111/290 (38%), Gaps = 50/290 (17%)
Query: 2 LIRIYKSLIRSKLDYGCPVY--------NSASSNSLQILNPVQNLCLRLATGAFRSSPVV 53
L +IY ++++ ++ Y C + A + Q + +Q+ L + AF+ +
Sbjct: 62 LRKIYMAVLQPQIMYTCSTWYIQGRKGFTGAQRVAEQAIQSIQDQALHRISDAFKRTSQQ 121
Query: 54 SLEAETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSK 113
+LE P ++ L+ + ++ + L LY RK+ ++
Sbjct: 122 ALEVCLHVPPAELTLAKLAEEACLRIMTSPLRSTLYYIL--LYRRKWLDN---------- 169
Query: 114 NEQGVGCALTIPEKDIVKRFGLNKNASIFHAEL---FALLQSLLTIKQLGT--CKALIIT 168
G+G A+ K G + +++ EL A L+ LL + G +A I T
Sbjct: 170 ---GIGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLQSQPRGDNPHEATIYT 226
Query: 169 DSLSCLQAIMNMFHENP--LVKRVQEELS-----STESPVEFLWCPSHVGIAGNETADEE 221
D+ + ++A + +++R+ L + V W P H G+ GN+ AD+
Sbjct: 227 DNQAAIRATCQPGRSSGQYIIRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNKKADQL 286
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKN 271
AK A + +++ + W +W + R IK
Sbjct: 287 AKLA---------------AVEATRRFAKWWKDQWEYAKHGRHLYRIIKE 321
>gi|344311822|gb|AEN04433.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLTWVPAHKGIGGNEQVDKLVSR 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|415711958|ref|ZP_11464494.1| ribonuclease H [Gardnerella vaginalis 55152]
gi|388057691|gb|EIK80516.1| ribonuclease H [Gardnerella vaginalis 55152]
Length = 353
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ I TDS ++C ++ + +N L+
Sbjct: 70 GELCAVLEALRA--HPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLI 127
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
+ + E++ E V+F+W H G AGNE DE A+ N
Sbjct: 128 RAIDSEITKREGSVKFVWVKGHAGNAGNEKVDELARTYAEN 168
>gi|225351001|ref|ZP_03742024.1| hypothetical protein BIFPSEUDO_02582 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158457|gb|EEG71699.1| hypothetical protein BIFPSEUDO_02582 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 392
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ +I TDS ++C ++ + +N L+
Sbjct: 37 GELCAVLEALRA--HPGSEPLVIETDSQYAINCSTTWVHGWKKNGWKNSQKKPVKNADLI 94
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ + E+S PV+F+W H G AGNE DE A+
Sbjct: 95 RAIDAEISKRPGPVKFVWVKGHAGNAGNEKVDELAR 130
>gi|22596455|gb|AAN03221.1|AF457078_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + EL A+ +L Q + I+
Sbjct: 597 VDGAANRETKLGKAGYVTDKGRQKVVSLNETTNQ-KTELHAIYLAL----QDSGSEVNIV 651
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL + V W P+H GI GNE D+
Sbjct: 652 TDSQYALGIIQAQPDR-SESELVNQIIEELIRKDK-VYLSWVPAHKGIGGNEQVDKLVSS 709
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 710 G-----IRKVLFLDGID--KAQEEHERYHSNWRTMASDFN 742
>gi|22037885|gb|AAM90222.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHE------NPLVKRVQEELSSTESPV 201
A LQ++L + G + ++TDS Q +M + +PLV+++ +EL E+ V
Sbjct: 636 AELQAVLLALKEGPPRMNLVTDS----QYVMGILQSQPEVSTSPLVEQIIQELLGKEA-V 690
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
W P+H GI GN D+ + I LF + ++ ++ +KY W
Sbjct: 691 YLSWVPAHKGIGGNTEVDKLVSRG-----IRQVLFMENIEPAVEDHEKYHSNW 738
>gi|344311882|gb|AEN04463.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKTGKAGYVTDKGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGLEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E + W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLVNKER-IYLAWVPAHKGIGGNEQVDKLVSK 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|331249470|ref|XP_003337352.1| hypothetical protein PGTG_19051 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 890
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQEE-----------LSSTESPVEFLWCPSHVGIAG 214
I +D+ + LQ I N PL K Q ++ + LWCP+HVGI
Sbjct: 694 IFSDNQATLQVIANP----PLSKSNQSTFIQIFDKLNILITDFHFSISLLWCPAHVGIPE 749
Query: 215 NETADEEAKQA 225
NE D+ AK+A
Sbjct: 750 NEKVDQLAKEA 760
>gi|156039259|ref|XP_001586737.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980]
gi|154697503|gb|EDN97241.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1232
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
++Y + + S DYG ++ + +IL +QNL LR G F++SP+ +E E
Sbjct: 743 QLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAA 799
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 1015 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 1074
Query: 249 TEEW 252
+E W
Sbjct: 1075 SENW 1078
>gi|53829061|gb|AAU94539.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|407915231|gb|EKG08948.1| hypothetical protein MPH_14100 [Macrophomina phaseolina MS6]
Length = 375
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 144 AELFALLQSLLTIKQL------------GTCKALIITDSLSCLQAIMNMFHENPLV--KR 189
AEL A+ Q++ I Q K +I DS S LQ+++ + V K+
Sbjct: 94 AELEAIRQAVALIDQAWPQREIIARPIAARVKHVIYCDSKSALQSLLRPRQRSGQVVLKQ 153
Query: 190 VQEELSSTESP----VEFLWCPSHVGIAGNETADEEAKQAINND-------VIHNELFFD 238
+ E L + V+ W P+H G+ GNE A++ A QA D V +
Sbjct: 154 ILETLDKMQRRKVPVVQLRWVPAHAGVPGNERANKLALQATEPDKALPDSGVRLKSVALA 213
Query: 239 EVKIIIKKKYTEE 251
+VK I + + +E
Sbjct: 214 DVKRAISRAWAKE 226
>gi|293652732|gb|ADE61218.1| pol protein, partial [Simian immunodeficiency virus]
Length = 997
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 163 KALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
K I+TDS L I + E+PLV + E+L E + W P+H GI GNE D+
Sbjct: 644 KVNIVTDSQYVLGIINSQPDHSESPLVNDIIEQLMKKEK-IYLSWVPAHKGIGGNEQVDK 702
Query: 221 EAKQAINNDVIHNELFFDEV 240
Q I LF D +
Sbjct: 703 LVSQG-----IRRVLFLDGI 717
>gi|331222567|ref|XP_003323957.1| hypothetical protein PGTG_05859 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQA 225
PV+ WCPSH GI NE AD AK+A
Sbjct: 148 PVKLYWCPSHEGIIANEKADTLAKEA 173
>gi|306478065|gb|ADM89407.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 109 IDGSKN-EQGVGCALTIPEK---DIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + K +V + HA L AL S L +
Sbjct: 442 VDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L LQA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 495 -IVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDK- 550
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+ ++ I LF D + ++ E++++ W
Sbjct: 551 ----LVSNGIRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|2108165|gb|AAC57420.1| pol polyprotein [Simian-Human immunodeficiency virus]
gi|2828038|gb|AAB99959.1| pol [Simian-Human immunodeficiency virus]
gi|2828049|gb|AAB99969.1| pol [Simian-Human immunodeficiency virus]
gi|2895566|gb|AAD12135.1| pol protein [Simian-Human immunodeficiency virus]
gi|110816292|gb|ABG91807.1| pol protein [synthetic construct]
Length = 1059
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 649 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 701
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 702 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 756
Query: 221 EAKQAI 226
Q I
Sbjct: 757 LVSQGI 762
>gi|7583329|gb|AAA47633.2| pol polyprotein, partial [Simian immunodeficiency virus]
gi|14600341|gb|AAK64194.1| pol polyprotein [Simian immunodeficiency virus 17E-Fr]
gi|14600351|gb|AAK64203.1| pol polyprotein [Simian immunodeficiency virus 17E-Cl]
gi|51105120|gb|AAT97120.1| pol protein [Simian immunodeficiency virus]
gi|53828991|gb|AAU94476.1| pol protein [Simian immunodeficiency virus]
gi|54312019|dbj|BAD66664.1| replication enzyme [Simian immunodeficiency virus]
gi|161936065|gb|ABX80606.1| pol protein [Simian immunodeficiency virus]
gi|343533430|gb|AEM54722.1| pol protein [Simian-Human immunodeficiency virus]
gi|343533441|gb|AEM54732.1| pol protein [Simian-Human immunodeficiency virus]
gi|343533452|gb|AEM54742.1| pol protein [Simian-Human immunodeficiency virus]
gi|227616|prf||1708139B pol gene
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|169655816|gb|ABX80597.2| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|161936075|gb|ABX80615.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51921816|gb|AAU14042.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51921796|gb|AAU14024.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51243494|gb|AAT99447.1| pol protein [Simian immunodeficiency virus]
gi|51317208|gb|AAT99860.1| pol protein [Simian immunodeficiency virus]
gi|57012261|gb|AAW32413.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|50262236|gb|AAT72777.1| pol protein [Simian immunodeficiency virus]
gi|51593818|gb|AAU08039.1| pol protein [Simian immunodeficiency virus]
gi|53828981|gb|AAU94467.1| pol protein [Simian immunodeficiency virus]
gi|53829031|gb|AAU94512.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|50262244|gb|AAT72784.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|2160378|dbj|BAA00863.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|344311858|gb|AEN04451.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKJGKAGYVTDKGRQKIITLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E + W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-IYLSWVPAHKGIGGNEQVDKLVSK 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|53829041|gb|AAU94521.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51593828|gb|AAU08048.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51593798|gb|AAU08021.1| pol protein [Simian immunodeficiency virus]
gi|51921806|gb|AAU14033.1| pol protein [Simian immunodeficiency virus]
gi|51921826|gb|AAU14051.1| pol protein [Simian immunodeficiency virus]
gi|53828971|gb|AAU94458.1| pol protein [Simian immunodeficiency virus]
gi|53829011|gb|AAU94494.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|53829021|gb|AAU94503.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|54111971|gb|AAV28695.1| pol, partial [Simian-Human immunodeficiency virus]
Length = 1059
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 649 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 701
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 702 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 756
Query: 221 EAKQAI 226
Q I
Sbjct: 757 LVSQGI 762
>gi|415716302|ref|ZP_11466329.1| ribonuclease H [Gardnerella vaginalis 1400E]
gi|388057564|gb|EIK80393.1| ribonuclease H [Gardnerella vaginalis 1400E]
Length = 353
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ I TDS ++C ++ + +N L+
Sbjct: 70 GELCAVLEALRA--HPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLI 127
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
+ + E++ E V+F+W H G AGNE DE A+ N
Sbjct: 128 RAIDSEITKREGSVKFVWVKGHAGNAGNEKVDELARTYAEN 168
>gi|306478219|gb|ADM89484.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + +K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTDKGKQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGIIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ + ++ I LF D + ++ E++++ W
Sbjct: 549 DK-----LVSNGIRKILFLDGID--KAQEEHEKYHSNW 579
>gi|242798615|ref|XP_002483206.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716551|gb|EED15972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 533
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
+ E+L+ PV W P H GI GNE AD+ AK+A +
Sbjct: 298 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAAS 336
>gi|55792411|gb|AAV65321.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|55792401|gb|AAV65312.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|53829051|gb|AAU94530.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|53829001|gb|AAU94485.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|51593808|gb|AAU08030.1| pol protein [Simian immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|18026828|gb|AAL55639.1|AF217181_2 pol protein [Simian-Human immunodeficiency virus]
gi|151413331|gb|ABS11162.1| pol protein [Simian-Human immunodeficiency virus]
Length = 1060
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 650 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 702
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + E+ LV ++ EE+ +S + W P+H GI GN+ D
Sbjct: 703 IVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDH 757
Query: 221 EAKQAI 226
Q I
Sbjct: 758 LVSQGI 763
>gi|331216904|ref|XP_003321131.1| hypothetical protein PGTG_02173 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 672
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQEE-----------LSSTESPVEFLWCPSHVGIAG 214
I +D+ + LQ I N PL K Q ++ + LWCP+HVGI
Sbjct: 476 IFSDNQATLQVIANP----PLSKSNQSTFIQIFDKLNILITDFHFSISLLWCPAHVGIPE 531
Query: 215 NETADEEAKQAINNDVIHN 233
NE D+ AK+A + + +
Sbjct: 532 NEKVDQLAKEATEGNTLFD 550
>gi|308235674|ref|ZP_07666411.1| ribonuclease H [Gardnerella vaginalis ATCC 14018 = JCM 11026]
gi|311114271|ref|YP_003985492.1| ribonuclease H [Gardnerella vaginalis ATCC 14019]
gi|310945765|gb|ADP38469.1| ribonuclease H [Gardnerella vaginalis ATCC 14019]
Length = 353
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ I TDS ++C ++ + +N L+
Sbjct: 70 GELCAVLEALRA--HPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLI 127
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ + E++ E V+F+W H G AGNE DE A+
Sbjct: 128 RAIDSEITKREGSVKFVWVKGHAGNAGNEKVDELAR 163
>gi|157005054|gb|ABV00757.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ Q I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSQG-----IRRVLFLDGID--KAQEDHEKYHSNWKAMASDFNLP 744
Query: 267 RKIKNSILPS 276
I I+ S
Sbjct: 745 PVIAKEIVAS 754
>gi|119197373|ref|XP_001249288.1| hypothetical protein CIMG_10450 [Coccidioides immitis RS]
Length = 207
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 97 VRKYENSNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL- 153
++ +N ++ D SK E Q G + + +I + L K +F+AELF + ++
Sbjct: 38 IKNLDNRSLILYSDRSKAEESQYAGAGVYDLQDNIRFSWNLGKYLEVFNAELFTIDKAFK 97
Query: 154 -----LTIKQLGTCKALIITDSLSCLQAIMNMFHENPL-----VKRVQEELSSTESPVEF 203
+ + +DS + +Q ++N + L +++ + + + + +
Sbjct: 98 LASSISQSQSRSISDIWVFSDSQAAIQRLINQDLNSGLYYLQSIRKTAKSIKNQQINLHL 157
Query: 204 LWCPSHVGIAGNETADEEAKQA 225
W P+HV I GNE D K+A
Sbjct: 158 HWVPAHVNIHGNEEPDLAVKKA 179
>gi|294962|gb|AAA74707.1| pol protein [Simian immunodeficiency virus]
Length = 1031
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 86 PNIMRTLNPLYVRKYENSNMKPT-------IDGSKNEQGVGCALTIPEKDIVKRFGLNKN 138
P + P VR Y N +P +DG+ N D +R +
Sbjct: 596 PEVKFISTPPLVRWYYNLVPEPIPEAVTFYVDGAANRDSKTGNAGYVASDGTQRVQYLEQ 655
Query: 139 ASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEELSS 196
+ AEL LL +L K K I+ DS +M E+P+V+++ +E
Sbjct: 656 TTNQQAELEGLLMALQDSKD----KVNIVVDSQYSYGILMTCPTNTEHPIVEQIIQEAIK 711
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAI 226
E+ + W P+H GI GNE D+ + I
Sbjct: 712 KEA-IYVTWVPAHKGIGGNEAVDKLVSKGI 740
>gi|344311856|gb|AEN04450.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKJGKAGYVTDKGRQKIITLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E + W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-IYLSWVPAHKGIGGNEQVDKLVSK 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|344311880|gb|AEN04462.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKTGKAGYVTDKGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGLEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E + W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLVNKER-IYLAWVPAHKGIGGNEQVDKLVSK 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|400822|sp|P31822.1|POL_FIVT2 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Deoxyuridine 5'-triphosphate nucleotidohydrolase;
Short=dUTPase; Contains: RecName: Full=Integrase;
Short=IN
gi|323950|gb|AAA43071.1| pol polyprotein, partial [Feline immunodeficiency virus]
Length = 1124
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEELSSTESPVEFL- 204
A +Q+LL + G+ + IITDS Q I+N+ ++ P + QE L E +
Sbjct: 632 AEVQALLLALKAGSEEMNIITDS----QYILNILNQQPDLMEGLWQEVLEQMEKKIAIFI 687
Query: 205 -WCPSHVGIAGNETADE 220
W P H GI GNE D+
Sbjct: 688 DWVPGHKGIPGNEEVDK 704
>gi|262170795|ref|ZP_06038473.1| ribonuclease HI [Vibrio mimicus MB-451]
gi|261891871|gb|EEY37857.1| ribonuclease HI [Vibrio mimicus MB-451]
Length = 131
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 126 EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP 185
EK + + + L N + E+ A + +L T+K+ C+ ++ TDS Q I H
Sbjct: 7 EKTLARGYRLTTNNRM---EMLAAVVALQTLKE--PCRVVLTTDSQYVRQGITQWIHNWK 61
Query: 186 LV-------KRVQE-------ELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231
L K V+ + + VE+ W H G NE DE A+QA N
Sbjct: 62 LRGWKTADKKPVKNADLWQALDRETARHQVEWRWVKGHAGHRENEMCDELARQAAENPTE 121
Query: 232 HNELFFDEVK 241
+ + E K
Sbjct: 122 DDTGYQPEAK 131
>gi|342883519|gb|EGU83988.1| hypothetical protein FOXB_05501 [Fusarium oxysporum Fo5176]
Length = 362
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRF---GLNKNASIFHAELFALLQSL---LTIKQLGTCK 163
DGS + +GV I ++ V F G A +F E L+ L L ++ T
Sbjct: 87 DGSLSSEGVASYGFIIHQNNVPIFDGSGRLGPAEVFDVEATGALEGLKAALNLRDAATQN 146
Query: 164 ALIITDSLS---CLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I D+L+ CL+ + ++ ++ + L+++ V+ LW H I GNE AD+
Sbjct: 147 IFICLDNLAAATCLRGTPSDSSQDVFLEF--QALATSHGAVQVLWVLGHTDIPGNELADK 204
Query: 221 EAKQAIN-NDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNS 272
A+ A + + + ++ I ++K E + W +P + K +K +
Sbjct: 205 LARAASSLPEPEDAQPTLAYLRRIARQKPKEAFEAWWSTSAPEQYKRLNLKAT 257
>gi|417556417|ref|ZP_12207476.1| ribonuclease HI [Gardnerella vaginalis 315-A]
gi|333602912|gb|EGL14337.1| ribonuclease HI [Gardnerella vaginalis 315-A]
Length = 353
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ I TDS ++C ++ + +N L+
Sbjct: 70 GELCAVLEALRA--HPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLI 127
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ + E++ E V+F+W H G AGNE DE A+
Sbjct: 128 RAIDSEITKREGSVKFVWVKGHAGNAGNEKVDELAR 163
>gi|195456249|ref|XP_002075057.1| GK23458 [Drosophila willistoni]
gi|194171142|gb|EDW86043.1| GK23458 [Drosophila willistoni]
Length = 474
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
M + IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E
Sbjct: 362 MKMLIYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLEIHEELN 421
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPNIMRT 91
P + LS ++ + ++ HPN + T
Sbjct: 422 MPWVQDEIARLSKAHLER---LDRHPNQLAT 449
>gi|37682471|gb|AAQ98164.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 594 VDGAANRETKIGKAGYVTDRGRQKVVSLNETTNQ-KAELQAIQLAL----QDSKSEVNIV 648
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 649 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 707 G-----IRKVLFLDGID--KAQEEHEKYHSNW 731
>gi|22037895|gb|AAM90231.1|AF468659_2 pol protein [Simian immunodeficiency virus]
Length = 1015
Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSS 196
AEL A+L L +K+ G K ++TDS Q +M + P LV+++ +EL
Sbjct: 642 QAELHAVL---LALKE-GPPKMNLVTDS----QYVMGILQSQPEVSTSALVEQIIQELLK 693
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
E+ + W P+H GI GN D+ + I LF + ++ ++ +KY W
Sbjct: 694 KEA-IYLSWVPAHKGIGGNTEVDKLVSKG-----IRQVLFLENIEPAVEDHEKYHSNW 745
>gi|87137473|gb|ABD27952.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q ++ + H P LV ++ EEL E +
Sbjct: 31 AELQAVLMALQDAGQEVNIVTDS----QYVLGIIHSQPDKSESELVNQIIEELIKKER-I 85
Query: 202 EFLWCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 86 YLSWVPAHKGIGGNEQIDK 104
>gi|87137475|gb|ABD27953.1| pol protein [Simian immunodeficiency virus]
gi|87137477|gb|ABD27954.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L Q + I+TDS Q ++ + H P LV ++ EEL E +
Sbjct: 31 AELQAVLMALQDAGQEVNIVTDS----QYVLGIIHSQPDKSESELVNQIIEELIKKER-I 85
Query: 202 EFLWCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 86 YLSWVPAHKGIGGNEQIDK 104
>gi|24753951|gb|AAN64078.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 38.9 bits (89), Expect = 2.5, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA ++ E+ LV ++ E+L E V W
Sbjct: 636 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDI-SESELVNQIIEQLIKKEK-VYLAWV 693
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N+
Sbjct: 694 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEDHEKYHSNWKAMASDFNRP 746
Query: 267 RKIKNSILPS 276
+ I+ S
Sbjct: 747 PVVAKEIVAS 756
>gi|341571918|gb|AEK79594.1| pol polyprotein [Simian immunodeficiency virus]
Length = 999
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEE 193
+N + AEL+A+ L +K G + I+TDS + LQ + + ++P+V+++ ++
Sbjct: 621 ENTTNQQAELWAID---LALKDSG-AQVNIVTDSQYVMGVLQGLPDQ-SDSPIVEQIIQQ 675
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADE 220
L+ ++ + W P+H GI GNE D+
Sbjct: 676 LTQ-KAAIYLAWVPAHKGIGGNEEVDK 701
>gi|116191149|ref|XP_001221387.1| hypothetical protein CHGG_05292 [Chaetomium globosum CBS 148.51]
gi|88181205|gb|EAQ88673.1| hypothetical protein CHGG_05292 [Chaetomium globosum CBS 148.51]
Length = 589
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 5 IYKSLIRSKLDYGCPVYN--------SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLE 56
+Y IRS L YG ++ + L QN LR+ GAF+S+ + +LE
Sbjct: 253 VYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVAGAFKSTLIRNLE 312
Query: 57 AETGEPNLDI 66
ET P LD+
Sbjct: 313 TETWVPPLDL 322
>gi|156034883|ref|XP_001585860.1| hypothetical protein SS1G_13377 [Sclerotinia sclerotiorum 1980]
gi|154698780|gb|EDN98518.1| hypothetical protein SS1G_13377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 362
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD+ AK+A NE F + + +K+
Sbjct: 125 KAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTVKEYA 184
Query: 249 TEEW 252
+++W
Sbjct: 185 SDQW 188
>gi|373249009|dbj|BAL46015.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 2.6, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|344311732|gb|AEN04388.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++L Q K I+TDS L +QA + E+ LV ++ E+L + E +
Sbjct: 477 AELQAILLALQDSEVKVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-IYMS 534
Query: 205 WCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 535 WVPAHKGIGGNEQVDK 550
>gi|331249489|ref|XP_003337361.1| hypothetical protein PGTG_18955 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 313
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 142 FHAELFALLQSLLTIKQL------GTCKAL-IITDSLSCLQAIMNMFHENPLVKRVQEEL 194
+ AEL + ++ IK++ G KA+ I +D+ L + +P +
Sbjct: 44 YEAELVGIGIAIRLIKKIIWSAWPGRFKAVAIFSDNQGALIRTADPSQPSPGQHLYADNF 103
Query: 195 SSTES---PVEFLWCPSHVGIAGNETADEEAKQAIN 227
SS + PV WCP H GI NE AD+ AK +
Sbjct: 104 SSLRNLGLPVSLYWCPGHEGITANEQADKMAKSEVQ 139
>gi|371940413|dbj|BAL45629.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 2.6, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|342183968|emb|CCC93449.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 418
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEE---------L 194
A L AL + ++ + + LI+TDS Q+++N + PL + E L
Sbjct: 38 AMLLALDRLVMPMADVKHKTLLIVTDS----QSLLNALSKGPLSQCDYTEDVIWTRLIEL 93
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINN----DVIHNELFFDEVKIIIKKKYTE 250
+ + F +C SH G+ NE ADE A Q + N ++ L+ +++ +I ++ +
Sbjct: 94 TLQGWLIHFQFCHSHCGVVVNEMADEYATQCMENGHFTELSVKPLWHKDLEALITRQLKK 153
Query: 251 EW 252
W
Sbjct: 154 RW 155
>gi|302393244|dbj|BAJ14327.1| pol protein [Simian immunodeficiency virus]
Length = 454
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 273 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 325
Query: 167 ITDSLSCLQAIMN--MFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
I DS + I E+ LV ++ EE+ +S + W P+H GI GN+ D Q
Sbjct: 326 IVDSQYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDHLVSQ 384
Query: 225 AINN 228
I
Sbjct: 385 GIRQ 388
>gi|409180239|gb|AFV26248.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQG-VGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q VG A I + KD VK N AEL A L +L Q KA
Sbjct: 604 VDGSCNRQSKVGKAGYITDRGKDKVKILEQTTNQ---QAELEAFLMAL----QDSGPKAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
I+ DS Q +M + E+ LV ++ EE+ + + W P+H GI GN+ D
Sbjct: 657 IVVDS----QYVMGIVTGCPTESESRLVSQIIEEMIK-KGEIYVAWVPAHKGIGGNQEID 711
Query: 220 EEAKQAI 226
Q I
Sbjct: 712 HLVSQGI 718
>gi|384498544|gb|EIE89035.1| hypothetical protein RO3G_13746 [Rhizopus delemar RA 99-880]
Length = 677
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ + IR KL+YG + + + LN Q+ CLR+ G R+S V L T P+
Sbjct: 398 RLFAAFIRPKLEYGLAIARLTRKDG-EELNRAQDRCLRMLVGGHRTSSTVVLRHITNLPS 456
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 457 MTFRADTL 464
>gi|451170523|gb|AGF32924.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
P+H GI GNE D+ I LF D + + +KY W T
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFSDGIDKAQEDHEKYHSNWRT 736
>gi|385802079|ref|YP_005838482.1| ribonuclease HI [Gardnerella vaginalis HMP9231]
gi|415702552|ref|ZP_11458698.1| ribonuclease H [Gardnerella vaginalis 284V]
gi|415705693|ref|ZP_11460964.1| ribonuclease H [Gardnerella vaginalis 75712]
gi|415706616|ref|ZP_11461605.1| ribonuclease H [Gardnerella vaginalis 0288E]
gi|333393107|gb|AEF31025.1| ribonuclease HI [Gardnerella vaginalis HMP9231]
gi|388052415|gb|EIK75439.1| ribonuclease H [Gardnerella vaginalis 75712]
gi|388053098|gb|EIK76089.1| ribonuclease H [Gardnerella vaginalis 284V]
gi|388054828|gb|EIK77763.1| ribonuclease H [Gardnerella vaginalis 0288E]
Length = 353
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHEN-------------PLV 187
EL A+L++L G+ I TDS ++C ++ + +N L+
Sbjct: 70 GELCAVLEALRA--HPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLI 127
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
+ + E++ E V+F+W H G AGNE DE A+
Sbjct: 128 RAIDSEITKREGSVKFVWVKGHAGNAGNEKVDELAR 163
>gi|156037426|ref|XP_001586440.1| hypothetical protein SS1G_12425 [Sclerotinia sclerotiorum 1980]
gi|154697835|gb|EDN97573.1| hypothetical protein SS1G_12425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 292
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 115 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 174
Query: 249 TEEW 252
+E W
Sbjct: 175 SENW 178
>gi|443916292|gb|ELU37414.1| RNase H domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 835
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 135 LNKNASIFHAELFALL----QSLLTIKQLGTCKALIITDSLSCLQAIMNM---------- 180
+ A+I+ AE+ + +S+ +Q+ + +I D+ + ++AI ++
Sbjct: 568 IGPRANIYDAEMLGIALCLNRSVSIAEQVQAKRIIIYCDNQAAVKAISSLQRHPAQYAAR 627
Query: 181 -FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDE 239
FH++ +R E+ + V+ W P H IAGNE ADE AK ++ + F+
Sbjct: 628 IFHQH--AQRFLEKDPNHHITVK--WLPGHSKIAGNELADELAK---GSETLQPTPVFNR 680
Query: 240 ----VKIIIKKKYTEEWNTKWV 257
K + K+ T +W W
Sbjct: 681 TITWAKTMATKRTTRDWMKVWT 702
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNP---VQNLCLRLATGAFRSSPVVSLEAETGE 61
++K+ + L YG P++ L +L P VQN LR GAFR++P +E
Sbjct: 358 LFKASVTPILTYGLPLWFHGR-RQLSLLEPLRKVQNQGLRWILGAFRTTPTRCMEHLASI 416
Query: 62 PNLDIRRKILSSNYIAKTLSIENHPNIMRTL 92
P L I + N+ +K SI + R L
Sbjct: 417 PPLHIACLRIIENFASKLRSIPTLAEVARRL 447
>gi|194917541|ref|XP_001983026.1| GG11033 [Drosophila erecta]
gi|190647749|gb|EDV45098.1| GG11033 [Drosophila erecta]
Length = 384
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
+YK++++ YG ++ + S++ + + QN CLR+ + A + E G P +
Sbjct: 289 VYKTILKPIWTYGIQLWGTTSASHRRKIQRFQNRCLRIISNAHPYHENSGIHEELGNPWV 348
Query: 65 --DIRRKILSSNYIAKTLSIENHPNIMRTLN 93
+I R S Y + +E+HPN++R L
Sbjct: 349 VDEIHRH--SERYARR---LESHPNLLRRLQ 374
>gi|90968071|emb|CAJ57812.1| pol protein [Simian immunodeficiency virus]
Length = 1019
Score = 38.9 bits (89), Expect = 2.8, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 28/157 (17%)
Query: 86 PNIMRTLNPLYVRKYENSNMKPT-------IDGS---KNEQGVGCALTIPEKDIVKRFGL 135
P I+ P VR + N +P +DG+ ++++G +T K+ V GL
Sbjct: 575 PTIVPIHTPPLVRLWYNLVSEPIEGAETYYVDGAAHRESKEGKAGYVTTSGKEHV--VGL 632
Query: 136 NKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKR 189
+ N + AEL A+L L +K G K I+TDS Q + + NP +V+
Sbjct: 633 S-NTTNQKAELEAVL---LALKHSGP-KVNIVTDS----QYVYGILVGNPTETDNKIVED 683
Query: 190 VQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+ ++L E+ V W P+H GI GNE D+ Q I
Sbjct: 684 IIQQLLGKEA-VYLTWLPAHKGIGGNEQVDKLVSQGI 719
>gi|195424034|ref|XP_002060913.1| GK22291 [Drosophila willistoni]
gi|194156998|gb|EDW71899.1| GK22291 [Drosophila willistoni]
Length = 234
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
IYK++++ YG P++ +A +S QI+ QN LR+ T A + + + G P +
Sbjct: 126 IYKTILKPVWTYGIPLWGTACMSSRQIIQRFQNKALRVMTDASFLTSNAEIHSTLGIPWV 185
Query: 65 --DIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSN 104
DI R L+ + + R LNPL + +NS+
Sbjct: 186 SDDITR-----------LTKAHLDRLDRHLNPLAINLLDNSS 216
>gi|159031793|dbj|BAF91868.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN + EL A+ L ++ GT + I+
Sbjct: 405 VDGAANRETKLGKAGYVTDKGRQKVVSLNDTTNQ-KTELQAIY---LALQDSGT-EVNIV 459
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 460 TDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYMAWVPAHKGIGGNEKVDK 513
>gi|344311846|gb|AEN04445.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A I ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKIGKAGYITDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSEAEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ +V ++ E+L + E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIIQAQPDK-SESEIVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDK 550
>gi|342320065|gb|EGU12008.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]
Length = 2002
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 131 KRFGLNKNASIFHAELFAL---LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP-- 185
+R G+ + +++ EL L L SLL T +++I SL A+ + P
Sbjct: 1651 ERKGMGQLQTVYAGELEGLRLALSSLLVTPIADTPLSVLI--SLDNTSALTHSTDPTPSS 1708
Query: 186 ------LVKRVQEELSSTESP--VEFLWCPSHVGIAGNETADEEAKQAI 226
+++ E L T V W P HVGI GNE AD E K+A+
Sbjct: 1709 GQHLRLAIRKAFEHLKRTRKDLVVSLSWSPGHVGIEGNEAADVEVKEAV 1757
>gi|256011200|gb|ACU55456.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN + EL A+ +L Q + I+
Sbjct: 596 VDGAANRETKLGKAGYVTDKGRQKVVTLNDTTNQ-KTELQAIHLAL----QDSGSEVNIV 650
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA ++ E+ LV ++ E+L E V W P+H GI GNE D+ +
Sbjct: 651 TDSQYALGIIQAQPDI-SESELVNKIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLVSK 708
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 709 G-----IRRVLFLDGID--KAQEXHEKYHSNW 733
>gi|116197425|ref|XP_001224524.1| hypothetical protein CHGG_06868 [Chaetomium globosum CBS 148.51]
gi|88178147|gb|EAQ85615.1| hypothetical protein CHGG_06868 [Chaetomium globosum CBS 148.51]
Length = 353
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 1 MLIRIY--KSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAE 58
ML+R++ S+I ++ C V S + L QN LR+ GAF+ +P+ +LE E
Sbjct: 68 MLVRLFVRSSVIALRVPTICIVGEHGSCT--KALGQAQNKSLRIVAGAFKHTPIRNLETE 125
Query: 59 TGEPNLDI 66
T P LD+
Sbjct: 126 TWVPPLDL 133
>gi|420240848|ref|ZP_14745035.1| ribonuclease HI [Rhizobium sp. CF080]
gi|398074428|gb|EJL65574.1| ribonuclease HI [Rhizobium sp. CF080]
Length = 168
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 183 ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+NP++ R +E+ T P++ +WC H GIAGNE ADE + I
Sbjct: 99 KNPVLWRSLDEVL-TIYPLKLIWCKGHSGIAGNERADELSMMGI 141
>gi|306478093|gb|ADM89421.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + +K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTDKGKQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGIIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ I LF D + ++ E++++ W
Sbjct: 549 DKLVSSG-----IRKILFLDGID--KAQEEHEKYHSNW 579
>gi|242807798|ref|XP_002485031.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715656|gb|EED15078.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII-IKKK 247
+ E+L+ PV W P H GI GNE AD+ AK+A + F+ + + +++
Sbjct: 126 KAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPG---FEHLSLAHVRRA 182
Query: 248 YTEEWN---TKWVNISPNENKLRKIKNSILP 275
TE ++W I+ + + R + +P
Sbjct: 183 CTEARRAAVSEWAQINAVQGRHRDGRVYKMP 213
>gi|386642402|emb|CCD41786.1| pol protein, partial [Simian immunodeficiency virus]
Length = 518
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 109 IDGSKN---EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N +QG +T K+ VK N AEL A+L L +K G K
Sbjct: 368 VDGAANRNSKQGKAGYVTNRGKEKVKELEDTTNQK---AELEAVL---LALKDSGP-KVN 420
Query: 166 IITDSLSCLQAIMNM---FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS + I++ F ++ LV + +L E+ V W P+H GI GNE D+
Sbjct: 421 IVTDS-QYVYGILDAQPEFSDSKLVTEIINQLIGKEA-VYLSWVPAHKGIGGNEEVDKLV 478
Query: 223 KQAINNDVIHNELFFDEVK 241
+ I LF +E++
Sbjct: 479 SRGIR-----QVLFLEEIE 492
>gi|384496750|gb|EIE87241.1| hypothetical protein RO3G_11952 [Rhizopus delemar RA 99-880]
Length = 1185
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R++ + IR KL+YG + + + L+ Q+ CLR+ G R+S V L T P+
Sbjct: 906 RLFAAFIRPKLEYGLAIARLTRKDGEE-LSRAQDRCLRMLVGGHRTSSTVVLRHITNLPS 964
Query: 64 LDIRRKIL 71
+ R L
Sbjct: 965 MTFRADTL 972
>gi|255984308|gb|ACU46226.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
IITDS L +QAI + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 95 IITDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLXWVPAHKGIGGNEQVDK 150
>gi|116205517|ref|XP_001228569.1| hypothetical protein CHGG_10642 [Chaetomium globosum CBS 148.51]
gi|88176770|gb|EAQ84238.1| hypothetical protein CHGG_10642 [Chaetomium globosum CBS 148.51]
Length = 928
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 32 LNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDI 66
L QN LR+ GAF+S+P+ +LE ET P LD+
Sbjct: 811 LGKAQNKSLRIVAGAFKSTPIRNLETETWVPPLDL 845
>gi|334697|gb|AAA91931.1| pol polyprotein [Simian immunodeficiency virus]
gi|55982837|gb|AAV69858.1| Pol polyprotein [SIV vector pCLN8]
Length = 1056
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N+Q G +T KD VK N AEL A L +L KA
Sbjct: 645 VDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALAD----SGPKAN 697
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
II DS Q +M + E+ LV ++ EE+ ++ + W P+H GI GN+ D
Sbjct: 698 IIVDS----QYVMGIITGCPTESESRLVNQIIEEMIK-KTEIYVAWVPAHKGIGGNQEID 752
Query: 220 EEAKQAI 226
Q I
Sbjct: 753 HLVSQGI 759
>gi|163643973|emb|CAN85196.1| pol protein [Simian immunodeficiency virus - wrc]
Length = 235
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEEL 194
+N + AEL AL +L + G K IITDS + + + E+PLV+ + E L
Sbjct: 16 QNTTNQQAELTALKLAL----EDGGDKMNIITDSQYVMGIVKDHPTISESPLVQEIIELL 71
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK--KYTEEW 252
E + W P+H GI GN D+ I + V +F + + I+ KY + W
Sbjct: 72 KGKEE-IYIEWVPAHKGIGGNTEIDKLVSAGIRSKV----MFLENITPAIESHTKYHQGW 126
>gi|218347062|emb|CAQ60125.1| Pol protein [Simian immunodeficiency virus - olc]
Length = 994
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AE+ A++++L K + I+TDSL + ++ E PL++ + +EL E +
Sbjct: 631 AEIRAIIEALRDSK----SEVNIVTDSLYAMGIVLEKPEVSEEPLIQELIKELEKKER-I 685
Query: 202 EFLWCPSHVGIAGNETADEEAKQAI 226
W P+H G+ GN+ D+ + I
Sbjct: 686 YIGWVPAHKGLGGNQEVDQLVSKGI 710
>gi|27356950|gb|AAN34508.1| pol protein [Simian immunodeficiency virus]
Length = 656
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AE+ A++++L K + I+TDSL + ++ E PL++ + +EL E +
Sbjct: 382 AEIRAIIEALRDSK----SEVNIVTDSLYAMGIVLEKPEVSEEPLIQELIKELEKKER-I 436
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVI 231
W P+H G+ GN+ D+ + I +
Sbjct: 437 YIGWVPAHKGLGGNQEVDQLVSKGIRTKQV 466
>gi|315272231|gb|ADU02684.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 108 TIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
T G ++E+GV +T K KR G + + AE A+ +L ++ I+
Sbjct: 613 TDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQT---AERIAIQMALEDTEE---TLINIV 666
Query: 168 TDSLSCLQAIMNMFH----ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
TDS C + I ++P +Q + + E V F W P H GI GN+ ADE K
Sbjct: 667 TDSYYCWKNITEGLGLEGPDSPWWPIIQN-IRAKEM-VYFAWVPGHKGIYGNQLADEATK 724
>gi|229818200|ref|ZP_04448482.1| hypothetical protein BIFANG_03497 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784451|gb|EEP20565.1| hypothetical protein BIFANG_03497 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 338
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 186 LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
L+K + E++ E PV+F W H G GNE DE A+
Sbjct: 112 LIKAIDAEIAKREGPVDFRWVKGHAGNVGNELVDELAR 149
>gi|38892755|gb|AAR27748.1| pol protein [Human immunodeficiency virus 1]
gi|212382582|gb|ACJ25611.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 593 VDGAANKETKIGKAGYVTDKGRQKVVTLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 647
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 705
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 706 G-----IRKVLFLDGID--KAQEEHEKYHSNW 730
>gi|358376045|dbj|GAA92616.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 861
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 110 DGSKNEQGVGCALTIPEKDIVK------RFGLNKNASIFHAELFALLQSL-------LTI 156
D S + +G A + + + V + G S+ AEL +L ++ L
Sbjct: 554 DASGRQGHLGAAAAVLDDESVTTGSLQIQVGPTDQWSVHAAELIGILYAINLINRIVLQQ 613
Query: 157 KQLGTCKA---LIITDSLSCLQAIMNMFHEN--PLVKRVQEELSSTES---PVEFLWCPS 208
++ G +A I++DS S L AI ++ ++ + + +T + + W P
Sbjct: 614 RRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPG 673
Query: 209 HVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
H I GN+TAD AK+A H + I+ +W +W S + LR
Sbjct: 674 HSEILGNDTADRLAKEAAIPGKTHPFSPLLSRERAYIRHGILTQWEKEWKE-SRDGGHLR 732
Query: 268 KIKNSI 273
KI N++
Sbjct: 733 KIDNTL 738
>gi|327458371|gb|AEA76625.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + IITDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAILLALQDSGIEVNIITDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|195440153|ref|XP_002067908.1| GK23350 [Drosophila willistoni]
gi|194163993|gb|EDW78894.1| GK23350 [Drosophila willistoni]
Length = 242
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
M + IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E
Sbjct: 130 MKMLIYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLKIHEELN 189
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPN 87
P + LS ++ + ++ HPN
Sbjct: 190 MPWVQDEIARLSKAHLER---LDRHPN 213
>gi|17046889|gb|AAL34892.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E VG A + ++ K L + + AEL A+ +L Q +A I+
Sbjct: 600 VDGAANRETKVGKAGYVTDRGRQKVITLTETTNQ-KAELQAIQLAL----QDSGSEANIV 654
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+ +
Sbjct: 655 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEG-VYLSWVPAHKGIGGNEQVDKLVSK 712
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 713 G-----IRKVLFLDGID--KAQEEHEKYHSNW 737
>gi|60544778|gb|AAX22724.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|392596179|gb|EIW85502.1| hypothetical protein CONPUDRAFT_70292 [Coniophora puteana
RWD-64-598 SS2]
Length = 224
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 186 LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK 245
+ K+++ +E W H G+ GNE ADEEAK+A +E+ + +K
Sbjct: 1 MAKKLRNRRGERRVEIELAWIAGHEGVEGNEWADEEAKEAARGGGGGEASSREELPVALK 60
Query: 246 KKYTE---------------EWNTKWVNISPNENKLRKI 269
K + W W N SP ++L K+
Sbjct: 61 GKLPDSISARKQAHAASMKTRWERLWAN-SPRAHRLAKL 98
>gi|87042742|gb|ABD16378.1| pol protein [Feline immunodeficiency virus]
Length = 1086
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEELSSTESPVEFL- 204
A +Q+LL Q G + IITDS Q I+N+ + P + QE L E +
Sbjct: 595 AEVQALLLALQAGPEEMNIITDS----QYILNIITQQPDLMEGLWQEVLEEMEKKIAIFI 650
Query: 205 -WCPSHVGIAGNETADE 220
W P H GI GNE D+
Sbjct: 651 DWVPGHKGIPGNEEVDK 667
>gi|49887120|gb|AAT68803.1| pol protein [Simian immunodeficiency virus]
Length = 1007
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 109 IDGSKN-EQGVGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N E +G A I E K VK +N + AEL A+L +L + G K
Sbjct: 602 VDGAANRESKMGKAGYISEWGKQGVKSL---ENTTNQKAELEAILLAL----EEGPSKMN 654
Query: 166 IITDSLSCLQAIMN--MFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS L ++ E+ +V+++ + L E V W P+H GI GN+ D+
Sbjct: 655 IVTDSQYALGILLEHPTETEHEIVEKIIQALQEKEQ-VYLNWVPAHKGIGGNDQVDKLVS 713
Query: 224 QAI 226
+ I
Sbjct: 714 RGI 716
>gi|302594686|gb|ADL59531.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + EL A+ +L Q K I+
Sbjct: 2 VDGAANRETKLGKAGYVTDKGRQKVVSLTETTN-QKTELHAIYLAL----QDSGSKVNIV 56
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I E+ LV ++ EEL + V W P+H GI GNE D+
Sbjct: 57 TDSQYSLGIIQAQPDRSESELVNQIIEELIKKDQ-VYLSWVPAHKGIGGNEQVDK 110
>gi|167832827|gb|ACA01989.1| pol protein [Human immunodeficiency virus 1]
Length = 711
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + K K LN + EL A+L +L Q + I+
Sbjct: 597 VDGAANRETKLGRAGYVTNKGRQKVITLNDTTNQ-KTELQAILLAL----QDAGLEVNIV 651
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 652 TDSQYALGIIQAQPDK-SESELVGQIIEQLIKKEK-VXLAWVPAHKGIGGNEQVDK 705
>gi|358376084|dbj|GAA92654.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 231
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWNTKWVNI 259
+ W P H I GN+TAD AK+A H + I++ +W +W
Sbjct: 36 IRLQWVPGHSEILGNDTADRLAKEAAIFGKTHPFSPLLSRERAYIRQGILTQWEQEWKE- 94
Query: 260 SPNENKLRKIKNSI 273
S + LRKI N++
Sbjct: 95 SRDSGHLRKIDNTL 108
>gi|212674686|gb|ACJ37105.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 3.2, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I + E+ LV ++ E+L E + W P
Sbjct: 637 LQAIYLALQDSGSEVNIVTDSQYALGIIQSQPDKSESELVNQIIEQLIKKEK-IYLAWVP 695
Query: 208 SHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
+H GI GNE D+ I LF D ++ ++ E+++T W ++ + N
Sbjct: 696 AHKGIGGNEQVDKLVSTG-----IRKVLFLDGIE--KAQEDHEKYHTNWRAMASDFNLPP 748
Query: 268 KIKNSILPS 276
I I+ S
Sbjct: 749 IIAKEIIAS 757
>gi|116200682|ref|XP_001226153.1| hypothetical protein CHGG_10886 [Chaetomium globosum CBS 148.51]
gi|88175600|gb|EAQ83068.1| hypothetical protein CHGG_10886 [Chaetomium globosum CBS 148.51]
Length = 349
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 17 GCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDI 66
G P + ++L+ QN LR+ GA++S+P+ LE E P LD+
Sbjct: 37 GLPPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLETEAWVPPLDL 86
>gi|300312712|ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
gi|300075497|gb|ADJ64896.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
Length = 143
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 111 GSKNEQGVGCALTIP--EKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
G+ G G L EK+I FG N + EL A++Q+L +K+ C+ ++ T
Sbjct: 14 GNPGRGGWGALLVAGGKEKEI---FGGEPNTTNNRMELMAVIQALNALKR--PCEVVVHT 68
Query: 169 DSLSCLQAIMNMFH--ENPLVKRVQEE------------LSSTESPVEFLWCPSHVGIAG 214
DS + I H + K +E + + VE+ W H G AG
Sbjct: 69 DSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVRGHNGHAG 128
Query: 215 NETADEEAKQAI 226
NE AD+ A + +
Sbjct: 129 NERADQLANRGV 140
>gi|392872151|gb|AFM85345.1| polymerase polyprotein, partial [Simian immunodeficiency virus]
Length = 297
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH------ENPLVKRVQEELSS 196
AEL A+L L +K+ T I+TDS Q +M + E+PLV+++ E L
Sbjct: 30 QAELQAIL---LALKESETW-VNIVTDS----QYVMGILQGAPDQSESPLVQQIIE-LMI 80
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+S V W P+H GI GNE D+ Q I
Sbjct: 81 QKSGVYLGWVPAHKGIGGNEEVDKLVSQGI 110
>gi|281191147|gb|ADA57073.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ LV ++ E+L E V W P
Sbjct: 633 LQAIQLALQDSGSEVNIVTDSQYALGIIQTQPDKSESELVNQIIEQLIKKER-VYLSWVP 691
Query: 208 SHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLR 267
+H GI GNE D+ Q I LF D + ++ E++++ W ++ + N
Sbjct: 692 AHKGIGGNEQVDKLVSQG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFNLPP 744
Query: 268 KIKNSILPS 276
I I+ S
Sbjct: 745 VIAKEIVAS 753
>gi|195417967|ref|XP_002060584.1| GK10393 [Drosophila willistoni]
gi|194156669|gb|EDW71570.1| GK10393 [Drosophila willistoni]
Length = 167
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
M + IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E
Sbjct: 55 MKMLIYKSIMKPMWTYGIPIWGTASPKNRDLIQTFQNKALRIISNAHIYTTNLEIHEELN 114
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPN 87
P + LS ++ + ++ HPN
Sbjct: 115 MPWVQDEIARLSKAHLER---LDRHPN 138
>gi|114801485|gb|ABI80059.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+ A
Sbjct: 650 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKER-VYLAWVPAHKGIGGNEQVDKLA 707
Query: 223 KQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
I LF D + + +KY W T
Sbjct: 708 SSG-----IRKVLFLDGIDKAQEEHEKYHSNWRT 736
>gi|17981620|gb|AAL51090.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLW 205
A LQ+L Q +A I+TDS L I E+ LV ++ E+L E V W
Sbjct: 631 AELQALYLALQDSGLEANIVTDSQYALGIIQAQPDSSESELVNQIIEQLIKKEK-VYLSW 689
Query: 206 CPSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 690 VPAHKGIGGNEQVDK 704
>gi|443302747|gb|AGC82273.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 541 VDGAANRETKLGKAGYVTDKGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 595
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 596 TDSQYALGIIQAQPDK-SESELVSQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 653
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 654 G-----IRKVLFLDGID--KAQEEHEKYHSNW 678
>gi|409180149|gb|AFV26167.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N Q G +T +D VK N AEL A L + G KA
Sbjct: 604 VDGSCNRQSKEGKAGYVTDRGRDKVKPLEQTTNQ---QAELEAFY---LALADSGP-KAN 656
Query: 166 IITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETAD 219
+I DS Q +M + EN LV ++ EE+ E+ + W P+H GI GN+ D
Sbjct: 657 VIVDS----QYVMGIIAGQPTESENRLVNQIIEEMIKKEA-IYVAWVPAHKGIGGNQEVD 711
Query: 220 EEAKQAINNDVIHNELFFDEVK 241
Q I LF ++++
Sbjct: 712 HLVSQG-----IRQSLFLEKIE 728
>gi|384501164|gb|EIE91655.1| hypothetical protein RO3G_16366 [Rhizopus delemar RA 99-880]
Length = 983
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y + R K +YG + + ++ L+ + +Q+ CLRL G R+S ++ T P+
Sbjct: 706 RLYATFARPKFEYGLAI-SRLTATDLKSIENLQDRCLRLLVGGHRTSSTTIIKHITTLPS 764
Query: 64 LDIRRKILSSNY 75
+ R +L + Y
Sbjct: 765 MRHRIDVLITRY 776
>gi|327458373|gb|AEA76626.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + IITDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAILLALQDSGIEVNIITDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|16118351|gb|AAL12719.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q K I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLKVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLSWV 691
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ I
Sbjct: 692 PAHKGIGGNEQVDKLVSAGI 711
>gi|339507358|gb|AEJ81091.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A I +K K LN + EL A+ +L Q + I+
Sbjct: 538 VDGAANRETKLGKAGYITDKGRQKVVSLNDTTNQ-KTELQAIYLAL----QDSGLEVNIV 592
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 593 TDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNERVDK 646
>gi|328833976|gb|AEB52437.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 38.5 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 653 IVTDSQYALGIIQAQPDK-SESELVSKIIEQLINKEK-VYLAWVPAHKGIGGNEQVDKLV 710
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
I LF D + ++ E++++ W ++ + N +I N I S
Sbjct: 711 STG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFNLPPEIANYIQAS 757
>gi|171058653|ref|YP_001791002.1| ribonuclease H [Leptothrix cholodnii SP-6]
gi|170776098|gb|ACB34237.1| ribonuclease H [Leptothrix cholodnii SP-6]
Length = 160
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH----------ENPLVKRV---- 190
E+ A++++L ++K+ +C+ + TDS I + H +N VK V
Sbjct: 61 EMMAVIEALASLKR--SCRITVYTDSAYVQNGISSWIHGWKRRGWKTADNKPVKNVDLWQ 118
Query: 191 QEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+ + ST +E+ W H G GNE AD A + +
Sbjct: 119 RLDALSTLHQIEWRWVKGHAGDPGNERADALANRGV 154
>gi|427782541|gb|JAA56722.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 636
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 164 ALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTES---PVEFLWCPSHVGIAGNE 216
A +ITDS LQ + + PL K + L + + + W P+H+GI GNE
Sbjct: 418 AAVITDSRPALQLLARGYRGPPLAKSIVRRLEAVQDLGCDLILQWVPAHIGIPGNE 473
>gi|353245275|emb|CCA76308.1| hypothetical protein PIIN_10303 [Piriformospora indica DSM 11827]
Length = 199
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 170 SLSC-------LQAIMNMFHENPLVKRVQEELSST-ESPVEFLWCPSHVGIAGNETADEE 221
SLSC + A+ L + + LS T S +E +W P H GNE AD+E
Sbjct: 11 SLSCFNTVRREITALRTEQERRELAESSDDALSDTVTSRMELMWLPGHEAAEGNEAADKE 70
Query: 222 AKQAIN 227
AK+AI
Sbjct: 71 AKKAIT 76
>gi|386642404|emb|CCD41787.1| pol protein, partial [Simian immunodeficiency virus]
Length = 651
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 20/139 (14%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DG+ N G +T K+ VK N AEL A+L L +K G K
Sbjct: 341 VDGAANRNSKLGKAGYVTNRGKEKVKELEDTTNQK---AELEAVL---LALKDSGP-KVN 393
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L+A F ++P+V + +L E+ V W P+H GI GNE D+
Sbjct: 394 IVTDSQYVYGILEA-QPEFSDSPIVTEIINQLIGKEA-VYLSWVPAHKGIGGNEEVDKLV 451
Query: 223 KQAINNDVIHNELFFDEVK 241
Q I LF D ++
Sbjct: 452 SQGIR-----QVLFLDGIE 465
>gi|306478073|gb|ADM89411.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L LQA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|256010913|gb|ACU55313.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QAI + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAIPDK-SESELVSQIIEELIKKEK-VYLAWXPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 708 STG-----IRKVLFLDGIDKAQEEHEKYHNNW 734
>gi|327458297|gb|AEA76588.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QAI + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>gi|327458295|gb|AEA76587.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QAI + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>gi|256011540|gb|ACU55626.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA ++ E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGAEXNIVTDSQYALGIIQAQPDI-SESELVNQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ I
Sbjct: 692 PAHKGIGGNEQVDKLVSAGI 711
>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]
Length = 321
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 155 TIKQL--GTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGI 212
T+K L GT + +++ +L + AI ++ + +K+ + + + E V +W P+H GI
Sbjct: 108 TVKSLENGTPQGSVLSTTLFNI-AINDVTRDKNHIKKFKN-IQTAEKAVHLIWVPAHYGI 165
Query: 213 AGNETADEEAKQAINNDVIHNELF--FDEVKIIIKKKYTEEWNTKW 256
NE AD+ AKQ + D L+ + +V+ I+ K+ + W
Sbjct: 166 EENEHADQIAKQ-VPEDQEPERLYPVYTDVQQTIRTKHANLFQQHW 210
>gi|256011614|gb|ACU55663.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.5 bits (88), Expect = 3.4, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIQKEK-VYLTWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|555799|gb|AAB09310.1| polymerase, partial [Feline immunodeficiency virus]
Length = 1123
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEELSSTESPVEFL- 204
A +Q+LL + G+ + IITDS Q I+N+ ++ P + QE L E +
Sbjct: 632 AEVQALLLALKAGSEEMNIITDS----QYILNIINQQPDLMEGLWQEVLEEMEKKIAIFI 687
Query: 205 -WCPSHVGIAGNETADE 220
W P H GI GNE D+
Sbjct: 688 DWVPGHKGIPGNEEVDK 704
>gi|306478125|gb|ADM89437.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 479 LQAIHLALQDSELEVNIVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 537 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|117910804|emb|CAL30193.1| pol protein [Simian immunodeficiency virus]
Length = 297
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
AEL A+L L +K+ G A I+TDS L I ++PLV+ + EE++ E V
Sbjct: 31 AELEAVL---LALKESGK-NANIVTDSQYVLGIISASPDQSDSPLVQAIIEEMTKKEK-V 85
Query: 202 EFLWCPSHVGIAGNETADE 220
W P+H GI GN+ D+
Sbjct: 86 YLAWVPAHKGIGGNDEIDK 104
>gi|451169812|gb|AGF32303.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ N
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNWXAMASEFN 749
>gi|380484386|emb|CCF40032.1| zinc knuckle [Colletotrichum higginsianum]
Length = 445
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 41/247 (16%)
Query: 5 IYKSLIRSKLDYGCPVYNSA-------SSNSLQILNPVQNLCLRLATGAFRSSPVVSLEA 57
IY+ + ++ Y C +++A + +L + +Q R GAFR++
Sbjct: 43 IYQGVAIPQMMYACSAWSNAGWGGKGYTDRTLNRMRRLQARAARAMCGAFRATSF----- 97
Query: 58 ETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSN-MKPTIDGSKNEQ 116
P LD+ +L I + + +N I R L + R+ EN+ + DGS
Sbjct: 98 ----PALDVEMHLLP---IEQRIWKQNIDTINR-LGSIEQREDENTEAIHIYTDGSGING 149
Query: 117 GVG----CALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI---KQLGT--CKALII 167
+G C T ++ G + ++++ EL ++ +L +Q G K LI
Sbjct: 150 YIGAAAVCITTYQTRNSY--MGSDAISTVYAGELQGIILALEIAEEDRQRGNNRSKVLIY 207
Query: 168 TDSLSCLQAIM-------NMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TD+ + +++ + + VK ++L E W P+H GI GNE AD+
Sbjct: 208 TDNQAAIRSSARPKGKSGSYLLQTIAVK--TQKLQEQGLKTEIRWVPAHTGIQGNEDADK 265
Query: 221 EAKQAIN 227
AK+A
Sbjct: 266 AAKEATG 272
>gi|156039247|ref|XP_001586731.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980]
gi|154697497|gb|EDN97235.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 374
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 27/199 (13%)
Query: 99 KYENSNMKPTIDGSKNEQ---GVGCALTIPEKDIV---KRFGLNKNASIFHAELFALLQS 152
K S+++ DGSK+E G I + DI F L NA +F AE A +
Sbjct: 70 KIPRSDIQIFSDGSKSESKDGATGGGFVITQFDIQVAQYSFSLGTNAEVFDAEAMAAVTG 129
Query: 153 LLTIKQLGTCKALIITDSLSCL-----------------QAIMNMFHENPLVKRVQEELS 195
L + K + TD L QA+ F + + LS
Sbjct: 130 AAKALALPSIK--LATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLKQAWAARPRLS 187
Query: 196 S-TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHN-ELFFDEVKIIIKKKYTEEWN 253
+ W P H+ I GNE AD+ AK+ N +K +I+ K + N
Sbjct: 188 HIPPGKIRIHWVPGHLNIPGNEMADKAAKEGAKLPPPPNPACTLASLKRLIRSKTNKADN 247
Query: 254 TKWVNISPNENKLRKIKNS 272
W +SP K + K++
Sbjct: 248 QLWNTVSPQYYKDLQYKHT 266
>gi|6643027|gb|AAF20388.1| pol protein [Human immunodeficiency virus 1]
Length = 912
Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + + EL A+ +L Q + I+
Sbjct: 506 VDGASNRETKLGKAGYVTDRGRQKIVSLTETTNQ-KTELHAIYLAL----QDSGSEVNIV 560
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 561 TDSQYALGIIQAQPDK-SESELVSQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKLVSS 618
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++KW ++ + N
Sbjct: 619 G-----IRKVLFLDGID--KAQEEHEKYHSKWRAMASDFN 651
>gi|256010901|gb|ACU55307.1| pol protein [Human immunodeficiency virus 1]
Length = 962
Score = 38.5 bits (88), Expect = 3.5, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q +A I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 593 LQAIYLALQDSGLEANIVTDSQYALGIIQAHPDK-SESELVNQIIEQLINKEK-VYMAWV 650
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 651 PAHKGIGGNEQVDKLVSXG-----IRKXLFLDGID--KAQEEHEKYHSNW 693
>gi|328834294|gb|AEB52719.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 38.5 bits (88), Expect = 3.6, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + EL A+ +L Q + I+
Sbjct: 598 VDGAANRETKLGKAGYVTDKGRQKVVSLNETTNQ-KTELHAIYLAL----QDSGSEVNIV 652
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 653 TDSQYALGIIQAQPDR-SESELVSQIIEQLIKKEK-VYLSWVPAHKGIGGNEQVDK---- 706
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ ++ I LF D + ++ E+++ W ++ + N
Sbjct: 707 -LVSNGIRKVLFLDGID--KAQEEHEKYHNNWRAMASDFN 743
>gi|306478343|gb|ADM89546.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 3.6, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 63/158 (39%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + +K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTBKGXQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGXIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ I LF D + ++ E++++ W
Sbjct: 549 DKLVSXG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|288187838|gb|ADC42406.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA+ + E+ LV ++ EEL E V W
Sbjct: 578 LQAIHLALQDSGAEVNIVTDSQYALGIIQALPDK-SESELVSQIIEELIKKEK-VYLAWV 635
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 636 PAHKGIGGNEQVDK 649
>gi|116195204|ref|XP_001223414.1| hypothetical protein CHGG_04200 [Chaetomium globosum CBS 148.51]
gi|88180113|gb|EAQ87581.1| hypothetical protein CHGG_04200 [Chaetomium globosum CBS 148.51]
Length = 719
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 17 GCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDI 66
G P + ++L+ QN LR+ GA++S+P+ LE E P LD+
Sbjct: 37 GLPPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLETEAWVPPLDL 86
>gi|3342104|gb|AAD12147.1| polymerase [Simian immunodeficiency virus]
Length = 1031
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 143 HAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH------ENPLVKRVQEELSS 196
AEL A+L +L Q K I+TDS Q +M + E+P+VK + E+
Sbjct: 660 QAELEAVLMAL----QDSNSKVNIVTDS----QYVMKILSQRPTETEHPIVKDIIEQCKQ 711
Query: 197 TESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
+ V W P+H GI GN+ D + I + +F ++++
Sbjct: 712 KDQ-VYLGWVPAHKGIGGNQEVDHLVSKGIRQKQV---MFLEKIE 752
>gi|339507240|gb|AEJ81032.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++L Q + I+TDS L I E+ LV ++ E+L + E V W P
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDXSESELVSQIIEQLINKEK-VYLAWVP 633
Query: 208 SHVGIAGNETADE 220
+H GI GNE D+
Sbjct: 634 AHKGIGGNEQVDK 646
>gi|242826817|ref|XP_002488709.1| hypothetical protein TSTA_008240 [Talaromyces stipitatus ATCC
10500]
gi|218712101|gb|EED11528.1| hypothetical protein TSTA_008240 [Talaromyces stipitatus ATCC
10500]
Length = 358
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 102 NSNMKPTIDGSKNEQGVGCALTIPE--KDIVKRFGLNKNASIFHAELFALLQSLLTIKQL 159
NS + DGS+ + +G ++ IP+ + + + G+ ++++ AE + +L T+ +
Sbjct: 222 NSRVLIYTDGSRYQGYIGTSMVIPQFGRQLTECIGMEHTSTVYAAEACGIKFALETLLRF 281
Query: 160 GTC-----KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAG 214
K I +DS S L+A+ N P W P H GI G
Sbjct: 282 AEDNERLKKVAIFSDSQSGLKALRN--------------------PRMVHWIPGHEGIPG 321
Query: 215 NE 216
NE
Sbjct: 322 NE 323
>gi|306478205|gb|ADM89477.1| pol protein [Human immunodeficiency virus 1]
gi|306478213|gb|ADM89481.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.5 bits (88), Expect = 3.6, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGVIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ + ++ I LF D + ++ E++++ W
Sbjct: 549 DK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|385765422|gb|AFI79224.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.5 bits (88), Expect = 3.6, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + ++ K L + + EL A+L +L Q + I+
Sbjct: 604 VDGASNRETKQGKAGYVTDRGRQKAISLTETTNQ-KTELHAILIAL----QDSGSEVNIV 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDKLVSA 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 717 G-----IRKILFLDGID--KAQEDHEKYHTNWRAMASDFN 749
>gi|195464836|ref|XP_002075933.1| GK18324 [Drosophila willistoni]
gi|194172018|gb|EDW86919.1| GK18324 [Drosophila willistoni]
Length = 111
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E P +
Sbjct: 3 IYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLEIHEELNMPWV 62
Query: 65 DIRRKILSSNYIAKTLSIENHPN 87
LS ++ + ++ HPN
Sbjct: 63 QDEIARLSKAHLER---LDRHPN 82
>gi|67553112|gb|AAY68697.1| pol protein [Human immunodeficiency virus 1]
gi|212383313|gb|ACJ25940.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E VG A + ++ K LN+ + EL A+ +L Q + I+
Sbjct: 594 VDGAANRETKVGKAGYVTDRGRQKVVTLNETTNQ-KTELQAIQLAL----QDSGSEVNIV 648
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 649 TDSQYALGIIQAQPDSSESELVNQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKLVSSG 707
Query: 226 INNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 708 -----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 739
>gi|306478231|gb|ADM89490.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 388 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLSWV 445
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
P+H GI GNE D+ A I LF D +
Sbjct: 446 PAHKGIGGNEQVDKLASSGIR-----KVLFLDGI 474
>gi|306478103|gb|ADM89426.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 479 LQAIHLALQDSELEVNIVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 537 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|157004996|gb|ABV00705.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGVEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMTSDFN 742
>gi|391379672|gb|AFM44305.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QAI + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAIPDK-SESELVNQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 692 PAHKGIGGNEQVDK 705
>gi|391379595|gb|AFM44236.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDR-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMASDFN 742
>gi|384495543|gb|EIE86034.1| hypothetical protein RO3G_10745 [Rhizopus delemar RA 99-880]
Length = 640
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R+Y + +R K +YG + + ++ L+ + +Q+ CLRL G R+S ++ T P+
Sbjct: 363 RLYATFVRPKFEYGLAI-SRMTATDLKSIENLQDRCLRLLVGGHRTSSTTIIKHITTLPS 421
Query: 64 LDIRRKILSSNYIAKT 79
+ R +L + Y +
Sbjct: 422 MRHRIDVLITRYCLRA 437
>gi|306477833|gb|ADM89291.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L LQA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|306478197|gb|ADM89473.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGIIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ + ++ I LF D + ++ E++++ W
Sbjct: 549 DK-----LVSNGIRRVLFLDGID--KAQEEHEKYHSNW 579
>gi|238634107|gb|ACR52015.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA ++ E+ LV ++ E+L E V W P+H GI GNE AD+
Sbjct: 653 IVTDSQYALGIIQAQPDI-SESELVNQIIEQLIKKER-VYLAWVPAHKGIGGNEQADKLV 710
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D ++ ++ E+++ W ++ + N
Sbjct: 711 SSG-----IRKVLFLDGIE--KAQEEHEKYHNNWRAMASDFN 745
>gi|90960711|dbj|BAE92739.1| Pol [Human immunodeficiency virus 1]
gi|114431186|dbj|BAF31433.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 653 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 710
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + I ++ E++++ W ++ + N
Sbjct: 711 STG-----IRKVLFLDGID--IAQEEHEKYHSNWRAMASDFN 745
>gi|42592280|emb|CAF29001.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 557
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 463 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLAWV 520
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
P+H GI GNE D+ + ++ I LF D +
Sbjct: 521 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGI 549
>gi|67552987|gb|AAY68585.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 630 LQAILLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 688 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 738
>gi|63098286|gb|AAY32339.1| pol protein [Human immunodeficiency virus 1]
gi|212383146|gb|ACJ25869.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + AEL A+ +L Q +A I+
Sbjct: 605 VDGAANRETKIGKAGYVTDKGRQKVVTLTETTNQ-QAELQAIQLAL----QDSGSEANIV 659
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ +V ++ EEL E + W P+H GI GNE D+
Sbjct: 660 TDSQYALGIIQAQPDK-SESEIVNQIIEELIKKER-IYLSWVPAHKGIGGNEQVDKLVSS 717
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 718 G-----IRKVLFLDGID--KAQEEHEKYHSNW 742
>gi|212383286|gb|ACJ25930.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 630 LQAILLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 688 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 738
>gi|164521195|gb|ABY60459.1| Gag-Pol-Nef protein [Expression vector MVA--89.6P-SIVGPN]
Length = 1405
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N+Q G +T KD VK N AEL A L +L KA I
Sbjct: 1182 DGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 1234
Query: 167 ITDSLSCLQAIMN--MFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
I DS + I E+ LV ++ EE+ +S + W P+H GI GN+ D Q
Sbjct: 1235 IVDSQYVMGIITGCPTESESRLVNQIIEEMIK-KSEIYVAWVPAHKGIGGNQEIDHLVSQ 1293
Query: 225 AINN 228
I
Sbjct: 1294 GIRQ 1297
>gi|344311685|gb|AEN04365.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + EL A+ +L Q + I+
Sbjct: 442 VDGAANRETKIGKAGYVTDKGRQKXXTLNETTNQ-KXELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVSQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDK 550
>gi|306478099|gb|ADM89424.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 142 FHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELS 195
HA L AL S L + I+TDS Q + + H P LV + E+L
Sbjct: 479 LHAILLALQDSGLEVN--------IVTDS----QYALGIIHAQPDKSESELVSEIIEQLI 526
Query: 196 STESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTK 255
E V W P+H GI GNE D+ I LF D + ++ E++++
Sbjct: 527 KKEK-VYLTWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSN 578
Query: 256 W 256
W
Sbjct: 579 W 579
>gi|306478003|gb|ADM89376.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L LQA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|256011404|gb|ACU55558.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ EZL E V W
Sbjct: 634 LQAILLALQDAGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEZLIXKEK-VYLSWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E+++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHNNWRAMASDFN 742
>gi|163643981|emb|CAN85200.1| pol protein [Simian immunodeficiency virus - wrc]
Length = 238
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN--MFHENPLVKRVQEEL 194
+N + AEL AL +L + G K IITDS + + + E+PLV+ + E L
Sbjct: 16 QNTTNQQAELTALKLAL----EDGGEKMNIITDSQYVMGIVKDHPTISESPLVQEIIELL 71
Query: 195 SSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKK--KYTEEW 252
E + W P+H GI GN D+ I + V +F + + I KY + W
Sbjct: 72 KGKEE-IYIEWVPAHKGIGGNTEIDKLVSAGIRSKV----MFLENITPAIDSHTKYHQGW 126
Query: 253 NT 254
+
Sbjct: 127 KS 128
>gi|306478063|gb|ADM89406.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L LQA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGILQAQPDK-SESELVNQIIEQLINKER-VYLSWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|451169795|gb|AGF32289.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|451169765|gb|AGF32264.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|86753663|gb|ABD15080.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + EL A+ +L Q + II
Sbjct: 594 VDGAANKETKIGKAGYVTDRGRQKIVSLNETTNQ-KTELQAIQLAL----QDSGSEVNII 648
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 649 TDSQYALGIIQAQPDR-SESELVNQIIEELIKKER-VYLSWVPAHKGIGGNEQVDKLVSS 706
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 707 G-----IRKVLFLDGID--KAQEEHEKYHSNW 731
>gi|156059000|ref|XP_001595423.1| hypothetical protein SS1G_03512 [Sclerotinia sclerotiorum 1980]
gi|154701299|gb|EDO01038.1| hypothetical protein SS1G_03512 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 166
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 10 IRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRK 69
+ S DYG ++ + +IL +QNL LR G F++SP+ +E E ++R
Sbjct: 4 VTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVRLN 63
Query: 70 ILSSNYIAKTLSIE-NHP 86
Y + L I +HP
Sbjct: 64 AGIKQYAFRLLKISPSHP 81
>gi|451169658|gb|AGF32175.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 971
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|341571665|gb|AEK79466.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.1, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK-- 705
Query: 223 KQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
+ +D I LF D + + +KY W
Sbjct: 706 ---LVSDGIRRVLFLDGIDKAQEDHEKYHSNW 734
>gi|13891896|gb|AAG50327.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E VG A + ++ K LN + + EL A+ +L Q + I+
Sbjct: 442 VDGAANRESRVGKAGYVTDRGRQKVISLN-DTTNQKTELQAIHLAL----QDSGLEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVSQIIEQLINKEK-VYLAWVPAHKGIGGNEQVDK 550
>gi|306478045|gb|ADM89397.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ + ++ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|256011700|gb|ACU55706.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--RAQEEHEKYHSNWRAMASDFN 742
>gi|17046563|gb|AAL34599.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 601 VDGAANRETKTGKAGYVTDKGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGLEVNIV 655
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E + W P+H GI GNE D+
Sbjct: 656 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-IYLSWVPAHKGIGGNEQVDKLVSS 713
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEWNTK 255
I LF D + + +KY W +
Sbjct: 714 G-----IRKVLFLDGIDKAQEEHEKYHSNWRAR 741
>gi|427791855|gb|JAA61379.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 38.1 bits (87), Expect = 4.2, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 140 SIFHAELFALLQSLLTIKQLGTC-KALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTE 198
++ E+ +++ +L + L + + + +DS + ++ I N + L + V+ +S+ +
Sbjct: 700 NVLSLEVLSIVHALESFSSLPSVPEYTLFSDSYAAIRHIQNRTLPHSLEQEVERAVSALQ 759
Query: 199 SPVEFL-WCPSHVGIAGNETADEEAKQAINNDVIHNELF 236
FL W P H GI GNE A A+ D++H F
Sbjct: 760 PSTVFLRWVPGHSGIDGNELAHRLAR-----DILHRAPF 793
>gi|343471757|emb|CCD15897.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 661
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 117 GVGCAL-TIPEKDIVKRFGLNKNA--SIFHAELFALLQSL----LTIKQLGTCKALIITD 169
GVG ++ ++K+ +N + S + AE A+L +L + + + LI+TD
Sbjct: 333 GVGLLFKSVSHPVLIKQVSVNCGSVSSSYRAESVAMLLALDRLVMPMTDVKHKTLLIVTD 392
Query: 170 SLSCLQAIMNM------FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
S S L A+ + E+ + R+ E L+ + F +C SH G+ NE ADE A
Sbjct: 393 SQSLLNALSKGPLSQCDYTEDVIWTRLIE-LTLHGWLIHFQFCHSHCGVVVNEMADEYAT 451
Query: 224 QAINNDVIH----NELFFDEVKIIIKKKYTEEW 252
Q + N L+ +++ +I ++ + W
Sbjct: 452 QCMENGHFTEPSVKPLWHKDLEALITRQLKKRW 484
>gi|339507292|gb|AEJ81058.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE AD+
Sbjct: 591 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQADK 646
>gi|212382950|gb|ACJ25774.1| pol protein [Human immunodeficiency virus 1]
Length = 1018
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++ Q +A I+TDS L +QA + E+ LV ++ E+L E V
Sbjct: 647 AELQAIQLALQDSGSEANIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLA 704
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
W P+H GI GNE D+ + I LF D +
Sbjct: 705 WVPAHKGIGGNEQVDKLVSKG-----IRKVLFLDGI 735
>gi|156254417|gb|ABU62698.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 39 LQAIYLALQDSGLEVNIVTDSQYGLGIIQAQPDR-SESELVSKIIEELIKKE-KVYLAWV 96
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 97 PAHKGIGGNEQVDK 110
>gi|25166639|gb|AAN73447.1|AF484478_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1431
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L++ + AEL A+L +L Q + I+
Sbjct: 1025 VDGAANRETKLGKAGYVTDRGRQKVVSLDETTNQ-KAELHAILLAL----QDSGSEVNIV 1079
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I E+ LV ++ E+L + V W P+H GI GNE D+
Sbjct: 1080 TDSQYALGIIQAQPDRSESELVNQIIEKLIGKDK-VYLSWVPAHKGIGGNEQVDK----- 1133
Query: 226 INNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
+ + I LF D + + ++Y W T
Sbjct: 1134 LVSSGIRKILFLDGIDKAQEEHERYHSNWRT 1164
>gi|256011606|gb|ACU55659.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESXLVXQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|256011450|gb|ACU55581.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + K K LN + EL A+ +L Q + I+
Sbjct: 599 VDGAANRETKLGKAGYVTNKGRQKVVSLNDTTNQ-QTELQAIYLAL----QDSGLEVNIV 653
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 654 TDSQYALGIIQAQPDQ-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK 707
>gi|73913814|gb|AAZ91793.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++ Q +A I+TDS L +QA + E+ LV ++ E+L E V
Sbjct: 628 AELQAIQLALQDSGSEANIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLA 685
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
W P+H GI GNE D+ + I LF D + ++ E++++ W
Sbjct: 686 WVPAHKGIGGNEQVDKLVSKG-----IRKVLFLDGID--KAQEEHEKYHSNW 730
>gi|407732448|gb|AFU26349.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 142 FHAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTE 198
HA AL S L + IITDS L +QA + E+ +V ++ EEL E
Sbjct: 633 LHAIYLALXDSGLEVN--------IITDSQYALGIIQAQPDR-SESEVVNQIVEELIKKE 683
Query: 199 SPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVN 258
V W P+H GI GNE D+ I LF D + ++ E +++ W
Sbjct: 684 K-VYLSWVPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHERYHSNWRT 735
Query: 259 ISPNENKLRKIKNSILPS 276
++ + N I I+ S
Sbjct: 736 MASDFNLPPVIAKEIVAS 753
>gi|319801100|emb|CBW48594.2| Pol protein [SIVcpz Ptt-09Cam155]
Length = 1002
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N + G A + ++ K L +N + AEL AL +L Q + ++
Sbjct: 596 VDGAANRDSKKGRAGYVTDRGRQKXINL-ENTTNQQAELKALHLAL----QDSGHQVNVV 650
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L I + + E+ +V ++ EEL E V W P+H GI GNE D+
Sbjct: 651 TDSQYVLGIIQSQPDYSESEVVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDK 704
>gi|409180071|gb|AFV26100.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N Q G +T KD VK N AEL A L +L KA I
Sbjct: 605 DGSCNRQSKEGKAGYVTDGGKDRVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 657
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + EN +V ++ EE+ ++ + W P+H G+ GN+ D
Sbjct: 658 IVDS----QYVMGIVAGQPTESENKIVSQIIEEMIK-KTAIYVTWVPAHKGLGGNQEVDH 712
Query: 221 EAKQAI 226
Q I
Sbjct: 713 LVSQGI 718
>gi|341571692|gb|AEK79484.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 38.1 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K + + + EL A+L L +K G+ + I+
Sbjct: 595 VDGAANRETKLGKAGYVTDKGKQKIITIQETTNQ-KTELHAIL---LALKDSGS-EVNIV 649
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 TDSQYALGIIQAQPDR-SESELVNQIIEQLIKKEK-VYLTWVPAHKGIGGNEQVDKLVSS 707
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 708 G-----IRKVLFLDGID--KAQEEHERYHSNWRAMASDFN 740
>gi|339507334|gb|AEJ81079.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + EL A+ +L Q + I+
Sbjct: 538 VDGAANRETKLGKAGYVTDKGRQKAVSLTETTNQ-KTELHAIYLAL----QDSGSEVNIV 592
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 593 TDSQYALGIIQAQPDK-SESELVNKIIEQLXQKER-VYLSWVPAHKGIGGNEQVDK 646
>gi|451169783|gb|AGF32279.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|451168235|gb|AGF30942.1| pol protein, partial [Human immunodeficiency virus 1]
gi|451169706|gb|AGF32215.1| pol protein, partial [Human immunodeficiency virus 1]
gi|451169712|gb|AGF32220.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|384485219|gb|EIE77399.1| hypothetical protein RO3G_02103 [Rhizopus delemar RA 99-880]
Length = 154
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFR 48
+L R Y ++ ++L+YG + N ++ ++IL QN CLR GAF+
Sbjct: 96 LLTRFYAQIVHARLEYGLAI-NRLTAPQIKILEDAQNECLRRIYGAFK 142
>gi|312601929|gb|ADQ92521.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQIDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF DE+ ++ E++++ W ++ + N
Sbjct: 708 SAG-----IRKVLFLDEID--KAQEEHEKYHSNWRAMASDFN 742
>gi|339507238|gb|AEJ81031.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESDLVNQIIEQLIGKEK-VYLAWV 632
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 633 PAHKGIGGNEQVDK 646
>gi|156048480|ref|XP_001590207.1| hypothetical protein SS1G_08971 [Sclerotinia sclerotiorum 1980]
gi|154693368|gb|EDN93106.1| hypothetical protein SS1G_08971 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 234
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 10 IRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRK 69
+ S DYG ++ + +IL +QNL LR G F++SP+ +E E ++R
Sbjct: 4 VTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVRLN 63
Query: 70 ILSSNYIAKTLSIE-NHP 86
Y + L I +HP
Sbjct: 64 AGIKQYAFRLLKISPSHP 81
>gi|13095227|gb|AAK12191.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L TE V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDQ-SESELVSQIIEQLIKTEK-VYLAWVPAHKGIGGNEQVDK 550
>gi|451169747|gb|AGF32249.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ L +++ G+ + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQ---LALQESGS-EVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|451169718|gb|AGF32225.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQIAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D ++ + +KY W
Sbjct: 717 G-----IRKVLFLDGIEKAQEEHEKYHNNW 741
>gi|17046813|gb|AAL34824.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 38.1 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 601 VDGAANRETKIGKAGYVTDKGRQKIVCLNETTNQ-KAELHAIQLAL----QDSGLEVNIV 655
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L + E + W P+H GI GNE D+
Sbjct: 656 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-IYLSWVPAHKGIGGNEQVDK 709
>gi|391379483|gb|AFM44136.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.1 bits (87), Expect = 4.5, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + K K L N + AEL A+ +L Q +A I+
Sbjct: 596 VDGAANRETKLGKAGYVTNKGRQKIVSLT-NTTNQKAELEAIHLAL----QDSGLEANIV 650
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 651 TDSQYVLGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLVSA 708
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 709 G-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 741
>gi|256011066|gb|ACU55389.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.5, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I + E+ LV ++ EEL E V W P
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQSQPDKSESELVNQIIEELIKKEK-VYLTWVP 692
Query: 208 SHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
+H GI GNE D+ + ++ I LF D + + +KY W
Sbjct: 693 AHKGIGGNEKVDK-----LVSNGIRRVLFLDGIDKAQEDHEKYHSNW 734
>gi|384493271|gb|EIE83762.1| hypothetical protein RO3G_08467 [Rhizopus delemar RA 99-880]
Length = 325
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
R Y+ ++R++L+YG + + S Q+ N Q+ CLR G R+S + + + P
Sbjct: 98 RFYRQIVRAQLEYGLAITKLTTFLSKQLEN-AQDACLRRIFGGSRTSSTMIMLHMSNLPT 156
Query: 64 LDIRRKILSSNYIAKTLSI 82
+ R L S ++ +++++
Sbjct: 157 MQERAYTLQSQFLLRSITL 175
>gi|195464053|ref|XP_002075905.1| GK10473 [Drosophila willistoni]
gi|194171990|gb|EDW86891.1| GK10473 [Drosophila willistoni]
Length = 111
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E P +
Sbjct: 3 IYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLEIHEELNMPWV 62
Query: 65 DIRRKILSSNYIAKTLSIENHPN 87
LS ++ + ++ HPN
Sbjct: 63 QDEIARLSKAHLER---LDRHPN 82
>gi|195443581|ref|XP_002069482.1| GK22268 [Drosophila willistoni]
gi|194165567|gb|EDW80468.1| GK22268 [Drosophila willistoni]
Length = 242
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 1 MLIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
M + IYKS+++ YG P++ +AS + ++ QN LR+ + A + + + E
Sbjct: 130 MKMLIYKSIMKPMWTYGIPIWGTASRKNCDLIQTFQNKALRIISNAHIYTTNLEIHEELK 189
Query: 61 EPNLDIRRKILSSNYIAKTLSIENHPN 87
P + LS ++ + ++ HPN
Sbjct: 190 MPWVQDEIARLSKAHLER---LDRHPN 213
>gi|451170431|gb|AGF32842.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 38.1 bits (87), Expect = 4.6, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 633 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 690
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 691 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMASDFN 741
>gi|322692284|gb|EFY84212.1| reverse transcriptase, putative [Metarhizium acridum CQMa 102]
Length = 1736
Score = 38.1 bits (87), Expect = 4.6, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 89 MRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFA 148
++T+ PL + Y + ++ P+ G G + + + + G A +F AE
Sbjct: 1416 LQTIPPLSLIVYSDGSLSPS-----GAAGYGYVVHQNRRSVCQGAGRLGPAEVFDAEAKG 1470
Query: 149 LLQSL---LTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQ---EELSSTESPVE 202
L+ L L + Q T + ++ D+++ + + ++ +RV + L+ T E
Sbjct: 1471 ALEGLKAALRLPQSATQRIVVCLDNIAAAKCLRGKPPDSS--QRVFLTFQALAKTHRKTE 1528
Query: 203 FLWCPSHVGIAGNETADEEAK 223
W P H I GNE AD AK
Sbjct: 1529 VRWIPGHTKIPGNEQADILAK 1549
>gi|306478217|gb|ADM89483.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.6, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 142 FHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELS 195
HA L AL S L + I+TDS Q + + H P LV + E+L
Sbjct: 479 LHAILLALQDSGLEVN--------IVTDS----QYALGIIHAQPDKSESELVSEIIEQLI 526
Query: 196 STESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTK 255
E V W P+H GI GNE D+ + ++ I LF D + ++ E++++
Sbjct: 527 KKEK-VYLTWVPAHKGIGGNEQVDK-----LVSNGIRKILFLDGID--KAQEEHEKYHSN 578
Query: 256 W 256
W
Sbjct: 579 W 579
>gi|306478153|gb|ADM89451.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.6, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 30/158 (18%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + K K L + HA L AL S L +
Sbjct: 442 VDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQDSGLEVN------- 494
Query: 165 LIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETA 218
I+TDS Q + + H P LV + E+L E V W P+H GI GNE
Sbjct: 495 -IVTDS----QYALGVIHAQPDKSESELVSEIIEQLIKKEK-VYLTWVPAHKGIGGNEQV 548
Query: 219 DEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
D+ + ++ I LF D + ++ E++++ W
Sbjct: 549 DK-----LVSNGIRKILFLDGID--KAQEEHEKYHSNW 579
>gi|110815945|sp|Q9WC54.3|POL_HV1S2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNA---SIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + +K K L + HA AL S L +
Sbjct: 1026 VDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLALRDSGLEVN------- 1078
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 1079 -IVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDK- 1134
Query: 222 AKQAINNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 1135 ----LVSSGIRKVLFLDGI 1149
>gi|116200973|ref|XP_001226298.1| hypothetical protein CHGG_08371 [Chaetomium globosum CBS 148.51]
gi|88176889|gb|EAQ84357.1| hypothetical protein CHGG_08371 [Chaetomium globosum CBS 148.51]
Length = 355
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 17 GCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDI 66
G P + ++L+ QN LR+ GA++S+P+ LE E P LD+
Sbjct: 37 GLPPRATGPKGPAKVLSKAQNRSLRIVVGAYKSAPIRCLETEAWVPPLDL 86
>gi|256010699|gb|ACU55206.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.7, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|451169759|gb|AGF32259.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 38.1 bits (87), Expect = 4.7, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|339507236|gb|AEJ81030.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLINKEK-VYLAWV 632
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 633 PAHKGIGGNEQVDK 646
>gi|327458239|gb|AEA76559.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ +V ++ EEL E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESEVVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|451169801|gb|AGF32294.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 976
Score = 38.1 bits (87), Expect = 4.8, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 570 VDGAANRETKLGKAGYVTDRGKQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 624
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 625 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 682
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 683 G-----IRKVLFLDGIDKAQEEHEKYHNNW 707
>gi|289469906|gb|ADC96608.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 38.1 bits (87), Expect = 4.8, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDR-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMASDFN 587
>gi|270012872|gb|EFA09320.1| hypothetical protein TcasGA2_TC001646 [Tribolium castaneum]
Length = 978
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 3 IRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEP 62
+++YK++I + Y PV+ S +L L +QN CLRLAT + R + L T
Sbjct: 864 LKLYKTIITPIITYAAPVWCGISDTALLPLQRLQNKCLRLATKSNRYIRLTDLREITKTE 923
Query: 63 NLDIRRKILSSNYIAKTLS 81
L LS N+ L
Sbjct: 924 TLRDYIDRLSYNFYKTRLD 942
>gi|49472933|gb|AAT66277.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 38.1 bits (87), Expect = 4.8, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ +V ++ EEL E V W P
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQGQPDKSESEVVSQIIEELIKKEK-VYLAWVP 692
Query: 208 SHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+H GI GNE D+ + +D I LF D + + E++++ W ++ + N
Sbjct: 693 AHKGIGGNEQVDK-----LVSDGIRKVLFLDGID--KAQDDHEKYHSNWKAMASDFN 742
>gi|451169771|gb|AGF32269.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|327458241|gb|AEA76560.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ +V ++ EEL E V W
Sbjct: 479 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESEVVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|256011422|gb|ACU55567.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 37.7 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEK---DIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + +K +V + HA AL S L +
Sbjct: 603 VDGASNRETKLGKAGYVTDKGRQKVVSLTDTTNQKTELHAIYLALQDSGLEVN------- 655
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 656 -IVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLSWVPAHKGIGGNEQVDKL 712
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 713 VSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 748
>gi|344311870|gb|AEN04457.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + EL A+ +L Q K I+
Sbjct: 442 VDGAANRETKIGRAGYVTDRGRQKIITLNETTNQ-KTELQAIHLAL----QDSGSKVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L JQA + E+ LV ++ E+L E + W P+H GI GNE D+
Sbjct: 497 TDSQYALGIJQAQPDK-SESELVNQIIEQLIKKEK-IYLSWVPAHKGIGGNEQVDK 550
>gi|156050867|ref|XP_001591395.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980]
gi|154692421|gb|EDN92159.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 138 NASIFHAELFALLQSLL---TIKQLGTCKALIITD---SLSCLQAIMNMFHENPLVK--R 189
N +++ EL + +++ +I Q G K I +D L L+ ++ ++ L+K +
Sbjct: 212 NQLVYNGELLGVTKAIEYANSIAQPGN-KFKIYSDNQAGLFRLKTPSDLPGQSCLIKAIK 270
Query: 190 VQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYT 249
V E + + + + W P H + GNE AD AK+A +E + + + IK+ +
Sbjct: 271 VAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYAFIGMDIKRMKS 330
Query: 250 EEW 252
E W
Sbjct: 331 ENW 333
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 8 SLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIR 67
+ + S DYG ++ + +IL +QNL LR G F++SP+ +E E ++R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 68 RKILSSNYIAKTLSIE-NHP 86
Y + L I +HP
Sbjct: 62 LNAGIKQYAFRLLKISPSHP 81
>gi|328834264|gb|AEB52693.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1008
Score = 37.7 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 602 VDGAANRETKIGKAGYVTDRGRQKIVTLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 656
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 657 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDKLVSS 714
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 715 G-----IRKVLFLDGID--KAQEAHEKYHSNW 739
>gi|327458229|gb|AEA76554.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDAGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLINKEK-VYLSWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|237632680|gb|ACR05662.1| pol protein [Simian immunodeficiency virus]
Length = 380
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 163 KALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNE 216
KA II DS Q +M + P LV ++ EE+ E+ + W P+H GI GN+
Sbjct: 28 KANIIVDS----QYVMGIIAGQPTESESRLVNQITEEMIKKEA-IYVAWVPAHKGIGGNQ 82
Query: 217 TADEEAKQAINN 228
D A Q I
Sbjct: 83 EVDHLASQGIRQ 94
>gi|325634974|gb|ADZ32906.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E + W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-IYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ I LF D + ++ E++++ W I + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRRVLFLDGID--KAQEDHEKYHSNWRTIVSDFNMP 744
Query: 267 RKIKNSILPS 276
I I+ S
Sbjct: 745 PVIAKEIVAS 754
>gi|289469826|gb|ADC96568.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L S E V W
Sbjct: 479 LQAICLALQDSELEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLISKER-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 537 PAHKGIGGNEQVDK-----LVSNGIRKILFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|339507228|gb|AEJ81026.1| pol protein [Human immunodeficiency virus 1]
Length = 626
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 545 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 602
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 603 PAHKGIGGNEQVDK 616
>gi|451169753|gb|AGF32254.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|451169676|gb|AGF32190.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|339507407|gb|AEJ81115.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 632
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 633 PAHKGIGGNEQVDK 646
>gi|327458379|gb|AEA76629.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSKIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|256010958|gb|ACU55335.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 638 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLTWV 695
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D ++ ++ E++++ W ++ + N
Sbjct: 696 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGIE--KAQEDHEKYHSNWKAMASDFN 746
>gi|374849922|dbj|BAL52924.1| ribonuclease H [uncultured beta proteobacterium]
Length = 153
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 196 STESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+T+ P+ + W H G+AGNE AD A+QAI
Sbjct: 111 ATQLPITWCWVKGHDGVAGNELADRLARQAI 141
>gi|339507403|gb|AEJ81113.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 632
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 633 PAHKGIGGNEQVDK 646
>gi|59003569|gb|AAW83574.1| pol protein [Human immunodeficiency virus 1]
gi|212383190|gb|ACJ25888.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L LQA + E+ LV ++ EEL E V W
Sbjct: 637 LQAIQLALQDSGSEVNIVTDSQYALGILQAQPDK-SESELVNQIIEELIKKER-VYLSWV 694
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 695 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 745
>gi|1890639|gb|AAC57052.1| pol protein [Simian immunodeficiency virus - agm.tan-1]
Length = 1067
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPV 201
A LQ++L + K I+TDS Q +M + P LV ++ EE+ + ++ +
Sbjct: 699 AELQAVLLALKHSKSKVNIVTDS----QYVMGILTAQPTQSDSVLVNQIIEEMINKDA-I 753
Query: 202 EFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
W P+H GI GN+ D+ Q I LF D ++
Sbjct: 754 YLTWVPAHKGIGGNQEIDKLVSQG-----IRQVLFLDRME 788
>gi|4336331|gb|AAD17757.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEK---DIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E G A + +K +V + HA AL S L +
Sbjct: 595 VDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLALRDSGLEVN------- 647
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 648 -IVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDKL 704
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 705 VSSG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMASDFN 740
>gi|344311693|gb|AEN04369.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + EL A+ +L Q + I+
Sbjct: 442 VDGAANRETKIGKAGYVTDRGRQKIVSLNETTNQ-KTELQAIQLAL----QDSGSEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL E + W P+H GI GNE D+ +
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEELIKKER-IYLSWVPAHKGIGGNEQVDKLVSR 554
Query: 225 AI 226
I
Sbjct: 555 GI 556
>gi|395455309|gb|AFN62007.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L LQA + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGILQAQPDK-SESELVNQIIEQLIGKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E ++T W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEDHERYHTNWRAMASDFN 742
>gi|158380327|gb|ABW37368.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 630 LQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ Q I LF D + + E++++ W ++ + N
Sbjct: 688 PAHKGIGGNEQVDKLVSQG-----IRKVLFLDGID--KAQDEHEKYHSNWRAMASDFN 738
>gi|156064993|ref|XP_001598418.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980]
gi|154691366|gb|EDN91104.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1477
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETG 60
L ++Y + + S DY ++ ++ ++ +QNL LR G F+++P+ +E E G
Sbjct: 1131 LRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 1189
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 110 DGSKNEQGVGCALTIPEKD------IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC- 162
D S E+G+G + I +R + N +++ ELF + +++ +
Sbjct: 1313 DASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTG 1372
Query: 163 -KALIITDSLSCLQAIMNMFHENPLVKRVQ-----EELSSTESPVEFLWCPSHVGIAGNE 216
K I +D+ + L + +++ E + + + + W P H + GNE
Sbjct: 1373 QKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNE 1432
Query: 217 TADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
AD+ AK+A NE F + + ++ ++
Sbjct: 1433 LADKLAKEATTIQPTSNETSFGLLAVFMENRF 1464
>gi|4324783|gb|AAD17047.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1427
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + AEL A+ +L Q + I+
Sbjct: 1021 VDGAANRETKLGKAGYVTDKGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 1075
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 1076 TDSQYALGIIQAQPDK-SESELVTQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDK---- 1129
Query: 225 AINNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 1130 -LVSSGIRKVLFLDGI 1144
>gi|410585816|gb|AFV74189.1| pol protein, partial [Human immunodeficiency virus]
Length = 1006
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ +V ++ EEL E W P+H GI GNE D+
Sbjct: 652 IVTDSQYALGIIQAQPDR-SESKVVNQIIEELIKKEKVYHLSWVPAHKGIGGNEQVDKLV 710
Query: 223 KQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
I LF D + + ++Y W T
Sbjct: 711 SSG-----IRKVLFLDGIDKAQEDHERYHSNWRT 739
>gi|327458381|gb|AEA76630.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSKIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|331251535|ref|XP_003338362.1| hypothetical protein PGTG_20003 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 319
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 163 KALIITDSLSCLQAIMNMFHENPLVKRVQE-ELSSTESP----VEFLWCPSHVGIAGNET 217
+ LI+ D+ L+ + + P K ++ LS P V+F WCP H I GNE
Sbjct: 206 RILILVDNQGVLKRLNDPLAPKPGQKIFEQINLSLALLPDHINVKFGWCPGHKDILGNEM 265
Query: 218 ADEEAKQAI 226
AD+ AK A+
Sbjct: 266 ADQLAKDAL 274
>gi|306477855|gb|ADM89302.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|304347439|gb|ADM25282.1| pol protein [Human immunodeficiency virus 1]
Length = 542
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + EL A+ +L Q + I+
Sbjct: 424 VDGAANRESKLGKAGYVTDRGXQKXVSLXDTTNQ-KTELXAIXLAL----QDSGLEVNIV 478
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 479 TDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK 532
>gi|283444879|gb|ADB20347.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K LN+ + EL A+ +L Q + I+
Sbjct: 593 VDGAANRETKIGKAGYVTDKGRQKIITLNETTNQ-KTELQAIQLAL----QDSGSEVNIV 647
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VHLSWVPAHKGIGGNEQVDKLVSS 705
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 706 G-----IRKVLFLDGID--KAQEEHEKYHSNW 730
>gi|256010703|gb|ACU55208.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q K I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 641 LQAIHLALQDSGLKVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 698
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 699 PAHKGIGGNEQVDKLVSTG-----IRRVLFLDGID--KAQEEHEKYHSNWRAMAXDFN 749
>gi|192335045|gb|ACF04033.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 639 LQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVSKIIEELIKKEK-VYLAWV 696
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E+++ W ++ + N
Sbjct: 697 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHNNWRAMASDFN 747
>gi|256011460|gb|ACU55586.1| pol protein [Human immunodeficiency virus 1]
Length = 1012
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + IITDS L +QA + E+ LV ++ E+L E V W
Sbjct: 643 LQAILLALQDSGIEVNIITDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 700
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
P+H GI GNE D+ I LF D + + +KY W
Sbjct: 701 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGIDKAQEDHEKYHSNW 743
>gi|451169688|gb|AGF32200.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|451169652|gb|AGF32170.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|238734120|gb|ACR55362.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGL----NKNASIFHAELFALLQSLLTIKQLGTCK 163
+DG+ N E +G + + +K K L N+ A + HA AL S L +
Sbjct: 595 VDGAANRETKLGKSGYVTDKGRQKVVSLTETTNQKAEL-HAIYLALQDSGLEVN------ 647
Query: 164 ALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 --IVTDSQYALGIIQAQPDR-SESELVNQIIEKLIEKEK-VYLSWVPAHKGIGGNEQVDK 703
Query: 221 EAKQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
I LF D + + +KY W T
Sbjct: 704 LVSSG-----IRKVLFLDGIDRAQEDHEKYHSNWRT 734
>gi|339507254|gb|AEJ81039.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 575 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 632
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 633 PAHKGIGGNEQVDK 646
>gi|327458227|gb|AEA76553.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 479 LQAILLALQDAGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLINKEK-VYLSWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|14289994|gb|AAK59181.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + EL+A+ +L Q + I+
Sbjct: 597 VDGAANRETKLGKAGYVTDKGRQKVVSLTETTNQ-KTELYAIHLAL----QDSGSEVNIV 651
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL + V W P+H GI GNE D+ +
Sbjct: 652 TDSQYALGIIQAQPDR-SESELVNQIIEELIQKDK-VYLSWVPAHKGIGGNEQVDKLVSR 709
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 710 G-----IRKVLFLDGID--KAQEEHERYHSNWRAMASDFN 742
>gi|407737164|gb|AFU30319.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + EL+A+ +L Q + I+
Sbjct: 601 VDGAANRETKLGKAGYVTDKGRQKVVSLTETTNQ-KTELYAIQLAL----QDSGSEVNIV 655
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I E+ +V ++ EEL E V W P+H GI GNE D+
Sbjct: 656 TDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDK----- 709
Query: 226 INNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 710 LVSSGIRKVLFLDGI 724
>gi|391379271|gb|AFM43946.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKL 266
P+H GI GNE D+ I LF D + + E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQDEHEKYHSNWRAMASDFNLP 744
Query: 267 RKIKNSILPS 276
I I+ S
Sbjct: 745 PIIAKEIVAS 754
>gi|374430061|gb|AEZ51324.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ T Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 630 LQAIYTALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ + ++ I LF D + ++ E++++ W
Sbjct: 688 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--EAQEEHEKYHSNW 730
>gi|306477851|gb|ADM89300.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|55735951|gb|AAV59684.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L + + AEL A+ +L Q + I+
Sbjct: 596 VDGASNRETKIGKAGYVTDKGRQKAVSLTETTNQ-KAELQAIQLAL----QDSGSEVNIV 650
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 651 TDSQYALGIIQAQPDK-SESDLVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDKLVSA 708
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
I LF D + ++ E+++ W ++ + N I I+ S
Sbjct: 709 G-----IRKVLFLDGID--KAQEEHEKYHNNWRAMASDFNLPPVIAKEIVAS 753
>gi|71725973|gb|AAZ39108.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 633 LQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 690
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + + E++++ W +++ + N
Sbjct: 691 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQDEHEKYHSNWRSMASDFN 741
>gi|306478015|gb|ADM89382.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAILLALQDSGVEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|256011466|gb|ACU55589.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E + W
Sbjct: 634 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-IYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|114801321|gb|ABI79914.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 634 LQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKER-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ EE+++ W
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEEYHSNW 734
>gi|376406742|gb|AFB38857.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 5.4, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS L I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 649 IVTDSQDALGIIQAQPDRSESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLVS 707
Query: 224 QAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + +K E++++ W ++ + N
Sbjct: 708 SG-----IRKVLFLDGID--KAQKEHEKYHSNWRAMASDFN 741
>gi|339507471|gb|AEJ81147.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ + E +G A + +K K LN+ + EL A+ L +K G + I+
Sbjct: 538 VDGAASRETKIGKAGYVTDKGXQKVVTLNETTNQ-KTELEAIY---LALKDSG-LEVNIV 592
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 593 TDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDK 646
>gi|156051534|ref|XP_001591728.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980]
gi|154704952|gb|EDO04691.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 947
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 4 RIYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPN 63
++Y + + S DYG ++ + + L +QNL LR G F++SP+ +E E
Sbjct: 459 QLYMACVTSIADYGSILWWKEQNQFKKTLQSLQNLALRKILGVFKTSPIKPMEIEAALCP 518
Query: 64 LDIRRKILSSNYIAKTLSIE-NHP 86
++R Y + L I +HP
Sbjct: 519 PEVRLNAGIKQYTFRLLKISPSHP 542
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 731 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 790
Query: 249 TEEWNT 254
+E W T
Sbjct: 791 SENWIT 796
>gi|256010783|gb|ACU55248.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEF 203
LQ++ Q + I+TDS Q + + H P LV ++ EEL E +
Sbjct: 640 LQAIYLALQDSGLEVNIVTDS----QYALGIIHAKPDKSESELVSQIIEELIKKEK-IYL 694
Query: 204 LWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
W P+H GI GNE D+ + ++ I LF D +
Sbjct: 695 AWVPAHKGIGGNEQVDK-----LVSNGIRKVLFLDGI 726
>gi|93210853|gb|ABF00812.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 37.7 bits (86), Expect = 5.5, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 636 LQAILLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLSWV 693
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 694 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 736
>gi|37221508|gb|AAQ89882.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 578 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 635
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 636 PAHKGIGGNEQVDK 649
>gi|20152979|gb|AAM13444.1|AF474246_2 pol polyprotein [Feline immunodeficiency virus]
Length = 1130
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP-LVKRV-QEELSSTESPVEFL- 204
A +Q+LL + G + IITDS Q I+N+ + P +++ V QE L E V
Sbjct: 639 AEVQALLLALKAGPEEMNIITDS----QYIVNLISQQPDMMEGVWQEVLEELEKKVAIFI 694
Query: 205 -WCPSHVGIAGNETADE 220
W P H GI GNE D+
Sbjct: 695 DWVPGHKGIPGNEEVDK 711
>gi|306478155|gb|ADM89452.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.5, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 142 FHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELS 195
HA L AL S L + I+TDS Q + + H P LV + E+L
Sbjct: 479 LHAILLALQDSGLEVN--------IVTDS----QYALGVIHAQPDKSESELVSEIIEQLI 526
Query: 196 STESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTK 255
E + W P+H GI GNE D+ + ++ I LF D + ++ E++++
Sbjct: 527 KKEK-IYLTWVPAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSN 578
Query: 256 W 256
W
Sbjct: 579 W 579
>gi|451169818|gb|AGF32308.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|427780805|gb|JAA55854.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 467
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 6 YKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSS-PVVSLEAETGEPNL 64
YK+L+R KL+Y P++N + + VQ+ +R ++ + V SL+A++G ++
Sbjct: 315 YKTLVRPKLEYASPIWNPHQNYLTDAIESVQSRAVRYIHSSYSYNISVSSLKADSGLESM 374
Query: 65 DIRRKILS 72
RR+I S
Sbjct: 375 VHRRRIAS 382
>gi|344311852|gb|AEN04448.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 442 VDGAANRETKIGKAGYVTDQGRQKIVTLNETTNQ-KAELQAIQLAL----QDSGLEVNIV 496
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 497 TDSQYALGIIQAQPDK-SESELVNQIIEQLINKER-VYLSWVPAHKGIGGNEQVDK 550
>gi|374349801|gb|AEZ35556.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 988
Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L S E V W
Sbjct: 619 LQAIYIALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLISKER-VYLSWV 676
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 677 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 727
>gi|391379291|gb|AFM43964.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A I +K K L + + EL A+ +L Q + I+
Sbjct: 597 VDGAANRETKLGKAGYITDKGRQKVISLTETTNQ-KTELHAIHLAL----QDSGSEVNIV 651
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+ +
Sbjct: 652 TDSQYALGIIQAQPDR-SESELVNQIIEELIKKEK-VYLSWVPAHKGIGGNEQVDKLVSK 709
Query: 225 AI 226
I
Sbjct: 710 GI 711
>gi|306477853|gb|ADM89301.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.6, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|42592274|emb|CAF28998.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 565
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 476 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 533
Query: 223 KQAIN 227
Q I+
Sbjct: 534 SQGIS 538
>gi|390353251|ref|XP_003728072.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Strongylocentrotus purpuratus]
Length = 915
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
+Y+S+IR L+Y ++ + +++ L VQ CLRL + P+ +L+ +L
Sbjct: 775 LYQSIIRPALEYASSAWSPLTKKNIEKLEKVQTKCLRLGN---KEIPIETLKERRARTDL 831
Query: 65 DIRRKILSSNYIAKTLSIENHPN 87
K L+ Y +HPN
Sbjct: 832 INLYKYLNGYYTTPAQRFFSHPN 854
>gi|325634683|gb|ADZ32652.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 666 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK-- 721
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
+ ++ I LF D + ++ E++++ W ++ + N I I+ S
Sbjct: 722 ---LVSNGIRKVLFLDGID--KAQEDHEKYHSNWRAMASDFNLPPVIAKEIIAS 770
>gi|306478013|gb|ADM89381.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAILLALQDSGVEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ I LF D + ++ E++++ W
Sbjct: 537 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNW 579
>gi|302594720|gb|ADL59548.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
IITDS L +QAI + E+ +V ++ E+L + E V W P+H GI GNE D+
Sbjct: 55 IITDSQYALGIIQAIPDK-SESEIVNQIIEQLINKE-KVYLSWVPAHKGIGGNEQVDK 110
>gi|255984052|gb|ACU46098.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 578 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 635
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ + I
Sbjct: 636 PAHKGIGGNEQVDKLVSKGI 655
>gi|93210686|gb|ABF00662.1| pol protein [Human immunodeficiency virus 1]
Length = 991
Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + EL AL +L Q + I+
Sbjct: 585 VDGAANRETKIGKAGYVTDRGRQKIVSLNETTNQ-KTELQALKLAL----QDSGSEVNIV 639
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+ +
Sbjct: 640 TDSQYVLGIIQAQPDK-SESELVNQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDKLVSK 697
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 698 G-----IRKVLFLDGID--KAQEEHEKYHSNW 722
>gi|391380017|gb|AFM44614.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L S E V W P+H GI GNE D+
Sbjct: 651 IVTDSQYALGIIQATPDK-SESELVNQIIEQLISKEK-VYLAWVPAHKGIGGNEQVDKLV 708
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ LF D + ++ E++++ W ++ + N
Sbjct: 709 SSG-----VRKVLFLDGID--RAQEEHEKYHSNWRAMASDFN 743
>gi|292658932|gb|ADE34326.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 37.7 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + +K K L + + AEL A+ +L Q + I+
Sbjct: 599 VDGASNRETKQGKAGYVTDKGRQKAVSLTETTNQ-KAELHAIQLAL----QDSGSEVNIV 653
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA+ + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 654 TDSQYVLGIIQALPDK-SESELVNQIIEQLIKKEK-VYLSWVPAHKGIGGNEQVDKLVSA 711
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++ W ++ + N
Sbjct: 712 G-----IRKILFLDGID--KAQEEHEKYHNNWKAMASDFN 744
>gi|254691747|gb|ACT79337.1| truncated pol protein [Simian immunodeficiency virus]
Length = 285
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEE 193
+N + AEL+A+ L +K G + I+TDS + LQ + + ++P+V+++ ++
Sbjct: 24 ENTTNQQAELWAID---LALKDSGA-QVNIVTDSQYVMGVLQGLPDQ-SDSPIVEQIIQQ 78
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADE 220
L+ ++ + W P+H GI GNE D+
Sbjct: 79 LTQ-KAAIYLAWVPAHKGIGGNEEVDK 104
>gi|410585872|gb|AFV74217.1| pol protein, partial [Human immunodeficiency virus]
Length = 1003
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 630 LQAICLALQDSGAEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEELIKKER-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 688 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 738
>gi|156037302|ref|XP_001586378.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980]
gi|154697773|gb|EDN97511.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 486
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8 SLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIR 67
+ + S +DYG ++ + +IL +QNL LR G F++SP+ +E E ++R
Sbjct: 2 ACVTSIVDYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 68 RKILSSNYIAKTLSIE-NHP 86
Y + L I +HP
Sbjct: 62 LNAGIKQYAFRLLKISPSHP 81
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 270 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 329
Query: 249 TEEW 252
+E W
Sbjct: 330 SENW 333
>gi|325635471|gb|ADZ33326.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|306477839|gb|ADM89294.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|306477837|gb|ADM89293.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|289469806|gb|ADC96558.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 150 LQSL-LTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLW 205
LQ++ L +K G+ + I+TDS L +QA + E+ LV ++ E+L S E V W
Sbjct: 479 LQAIHLALKDSGS-EVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLISKEK-VYLAW 535
Query: 206 CPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 536 VPAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|284192193|gb|ADB82816.1| pol protein [Simian immunodeficiency virus]
Length = 578
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A I E+ L +N + AEL A+L +L + K I+
Sbjct: 283 VDGAANRESREGKAGYISERGKTSVKAL-ENTTNQKAELTAVLMALEDSGE----KVNIV 337
Query: 168 TDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
TDS Q ++N+ E P +V+++ ++L + V W P+H G+ GNE D+
Sbjct: 338 TDS----QYVLNILTEQPTTTEHEIVEKIIQQLQKKQE-VYLQWVPAHKGMGGNEQIDKL 392
Query: 222 AKQAI 226
+ I
Sbjct: 393 VSRGI 397
>gi|256011278|gb|ACU55495.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QAI + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAIPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAI 226
I
Sbjct: 708 SAGI 711
>gi|283444786|gb|ADB20266.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q K I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 630 LQAIQLALQDSGSKVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ I
Sbjct: 688 PAHKGIGGNEQVDKLVSNGI 707
>gi|242797316|ref|XP_002482987.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719575|gb|EED18995.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1249
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 110 DGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTC-----KA 164
DGS + G+G A+ K G + +++ EL + +L + + C +A
Sbjct: 928 DGSGFDNGIGAAVYSSIGQAYKPVGSSDTHTVYAGELEGIDAALEILLRSQPCDDNPHEA 987
Query: 165 LIITDSLSCLQAIMNMFHENP--LVKRVQEEL-----SSTESPVEFLWCPSHVGIAGNET 217
I TD+ + ++A + +++R+ L + + V W P H G+ GNE
Sbjct: 988 TIYTDNQAAIRATCQPGRSSGQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEK 1047
Query: 218 ADEEAKQA 225
AD+ AK A
Sbjct: 1048 ADQLAKLA 1055
>gi|194399899|gb|ACF60874.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E + W P+H GI GNE D+
Sbjct: 649 IVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-IYLAWVPAHKGIGGNEQVDK-- 704
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
+ N I LF D + ++ E++++ W
Sbjct: 705 ---LVNTGIRRVLFLDGID--KAQEEHEKYHSNW 733
>gi|170676531|gb|ACB30413.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|170676529|gb|ACB30412.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|116201349|ref|XP_001226486.1| hypothetical protein CHGG_08559 [Chaetomium globosum CBS 148.51]
gi|88177077|gb|EAQ84545.1| hypothetical protein CHGG_08559 [Chaetomium globosum CBS 148.51]
Length = 298
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 30 QILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDI 66
+ L QN LR+ GAF+S+P+ +LE ET P LD+
Sbjct: 20 KALGKAQNKSLRIVAGAFKSTPIRNLETETWVPPLDL 56
>gi|427783467|gb|JAA57185.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 628
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 110 DGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSL----LTIKQLGTCK 163
DGS + + A IP R L +AS AEL L + T QL
Sbjct: 357 DGSVRDSPRSAAAACVIPTTGTTIRSRLPFHASSTAAELAGLHLAADYLAATTPQLPVA- 415
Query: 164 ALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP---VEFLWCPSHVGIAGNE 216
I+ DS LQA++ V + +L++ + + W PSHVGIAGNE
Sbjct: 416 --ILCDSRPALQALLQPDQAGITVALLHAKLTAIRASGVRLSLHWLPSHVGIAGNE 469
>gi|325635423|gb|ADZ33286.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|222428325|gb|ACM49990.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 5.9, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W I+ + N
Sbjct: 708 STG-----IRRVLFLDGID--KAQEDHEKYHTNWRAIASDFN 742
>gi|451169777|gb|AGF32274.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 658
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQTQPDKSESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSSG 717
Query: 226 INNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 718 -----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|327458365|gb|AEA76622.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ +V ++ E+L + E V W
Sbjct: 479 LQAILLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESEIVSKIIEQLINKEX-VYLTWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEKVDK 550
>gi|325635466|gb|ADZ33322.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|312602023|gb|ADQ92566.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L + E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPDQ-SESELVNQIIEQLINKEK-VYLAWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
I LF D + ++ E+++T W I + N + I+ S
Sbjct: 708 SSG-----IRKVLFLDGID--KAQEDHEKYHTNWRAIVSDFNIPPVVAKEIIAS 754
>gi|306477841|gb|ADM89295.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|256011368|gb|ACU55540.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ + E +G A I +K K LN+ + AEL A+ +L Q + I+
Sbjct: 598 VDGAASRETKIGKAGYITDKGKQKVVTLNETTNQ-KAELEAIRLAL----QDSELEVNIV 652
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV + EEL E V W P+H GI GNE D+
Sbjct: 653 TDSQYALGIIQAQPDK-SESELVSXIIEELIKKER-VYLSWVPAHKGIGGNEQVDK---- 706
Query: 225 AINNDVIHNELFFDEV 240
+ + I LF D +
Sbjct: 707 -LVSSGIRKVLFLDGI 721
>gi|122913067|gb|ABM68063.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 148 ALLQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFL 204
A LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V
Sbjct: 576 AELQAIQLALQDSESEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIQKEM-VYLS 633
Query: 205 WCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
W P+H GI GNE D+ + +D I LF D + + E++++ W ++ + N
Sbjct: 634 WVPAHKGIGGNEQVDK-----LVSDGIRKVLFLDGID--KAQDEHEKYHSNWRAMASDFN 686
>gi|156048334|ref|XP_001590134.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980]
gi|154693295|gb|EDN93033.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 184 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 243
Query: 249 TEEWNT 254
+E W T
Sbjct: 244 SENWIT 249
>gi|393231645|gb|EJD39235.1| hypothetical protein AURDEDRAFT_38460, partial [Auricularia
delicata TFB-10046 SS5]
Length = 428
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 5 IYKSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNL 64
+Y + I L YGC + L+ L+ VQ++ LR + G + S + L ETG L
Sbjct: 187 LYTARIDPLLTYGCEIMPDIDDCLLEKLSGVQSMFLRRSLGVYNRSALAPLYTETGIFPL 246
Query: 65 DIRRKILSSNYIAKTLS 81
RR + ++ TLS
Sbjct: 247 RYRRIDMLLRFLQYTLS 263
>gi|325635499|gb|ADZ33349.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|325635476|gb|ADZ33330.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|325635440|gb|ADZ33300.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|325635435|gb|ADZ33296.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|283444834|gb|ADB20308.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 37.7 bits (86), Expect = 6.0, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + + AEL A+ +L Q + I+
Sbjct: 593 VDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQ-RAELQAIQLAL----QDSGSEVNIV 647
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 TDSQYALGIIQTQPDKSESELVNQIIEQLIKKEM-VYLSWVPAHKGIGGNEQVDKLVSSG 706
Query: 226 INNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + + +KY W
Sbjct: 707 -----IRKVLFLDGIDKVQEEHEKYHNNW 730
>gi|170778879|gb|ACB36839.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA+ + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAVPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>gi|451169700|gb|AGF32210.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|443303339|gb|AGC82569.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 541 VDGASNRETKIGKAGYVTDRGRQKVVTLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 595
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 596 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDK---- 649
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
+ ++ I LF D + ++ E ++ W ++ + N
Sbjct: 650 -LVSNGIRKVLFLDGID--KAQEEHERYHNNWRAMASDFN 686
>gi|409180081|gb|AFV26109.1| pol protein, partial [Simian immunodeficiency virus]
Length = 939
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N Q G +T KD VK N AEL A L +L KA I
Sbjct: 605 DGSCNRQSKEGKAGYVTDRGKDRVKVLEQTTNQ---QAELEAFLMALTD----SGPKANI 657
Query: 167 ITDSLSCLQAIMNMF------HENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + EN +V ++ EE+ ++ + W P+H G+ GN+ D
Sbjct: 658 IVDS----QYVMGIVAGQPTESENKIVNQIIEEMIK-KTAIYVAWVPAHKGLGGNQEVDH 712
Query: 221 EAKQAI 226
Q I
Sbjct: 713 LVSQGI 718
>gi|288899126|gb|ADC67095.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 633 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 690
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E+++T W ++ + N
Sbjct: 691 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHTNWRAMASDFN 741
>gi|256011594|gb|ACU55653.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + + I+TDS L +QA + E+ LV ++ E L S E V W
Sbjct: 633 LQAIHLALQDSSSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIERLISKEK-VYLAWV 690
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 691 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEDHEKYHSNWRAMASDFN 741
>gi|256011044|gb|ACU55378.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ B N
Sbjct: 708 SAG-----IRKVLFLDXID--KAQEDHEKYHSNWKAMASBFN 742
>gi|170676526|gb|ACB30411.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>gi|451169670|gb|AGF32185.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + II
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIVSLNETTNQ-KAELQAIQLAL----QDSGSEVNII 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D + + +KY W
Sbjct: 717 G-----IRKVLFLDGIDKAQEEHEKYHNNW 741
>gi|451169664|gb|AGF32180.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1010
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + AEL A+ +L Q + I+
Sbjct: 604 VDGAANRETKLGKAGYVTDRGRQKIISLNETTNQ-KAELQAIQLAL----QDSGSEVNIV 658
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 659 TDSQYALGIIQAQPDK-SESELVNQIIEQLIQKER-VYLSWVPAHKGIGGNEQVDKLVSS 716
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
I LF D + ++ E++++ W
Sbjct: 717 G-----IRKVLFLDGID--KAQEEHEKYHSNW 741
>gi|325634651|gb|ADZ32624.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 666 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK-- 721
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
+ ++ I LF D + ++ E++++ W ++ + N I I+ S
Sbjct: 722 ---LVSNGIRKVLFLDGID--KAQEDHEKYHSNWRAMASDFNLPPVIAKEIIAS 770
>gi|238734130|gb|ACR55371.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGL----NKNASIFHAELFALLQSLLTIKQLGTCK 163
+DG+ N E +G + + +K K L N+ A + HA AL S L +
Sbjct: 595 VDGAANRETKLGKSGYVTDKGRQKVVSLTETTNQKAEL-HAIYLALQDSGLEVN------ 647
Query: 164 ALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 --IVTDSQYALGIIQAQPDR-SESELVNQIIEKLIEKEK-VYLSWVPAHKGIGGNEQVDK 703
Query: 221 EAKQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
I LF D + + +KY W T
Sbjct: 704 LVSSG-----IRKVLFLDGIDRAQEDHEKYHSNWRT 734
>gi|187371897|gb|ACD02797.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K L + + AEL A+ +L Q + I+
Sbjct: 609 VDGASNRETKIGKAGYVTDRGRQKAVSLTETTNQ-KAELHAIQLAL----QDSGSEVNIV 663
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 664 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLSWVPAHKGIGGNEQVDK 717
>gi|170676545|gb|ACB30417.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
P+H GI GNE D+ + + I LF D +
Sbjct: 537 PAHKGIGGNEQVDK-----LVSSGIRKVLFLDGI 565
>gi|38892600|gb|AAR27610.1| pol protein [Human immunodeficiency virus 1]
gi|212382556|gb|ACJ25600.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 37.7 bits (86), Expect = 6.1, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + +K K L++ + AEL A+ +L Q + I+
Sbjct: 593 VDGAANRETKIGKAGYVTDKGKQKVVSLSETTNQ-KAELQAIQLAL----QDSGSEVNIV 647
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+ +
Sbjct: 648 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKER-VYLSWVPAHKGIGGNEQVDKLVSK 705
Query: 225 AI 226
I
Sbjct: 706 GI 707
>gi|306478057|gb|ADM89403.1| pol protein [Human immunodeficiency virus 1]
gi|306478061|gb|ADM89405.1| pol protein [Human immunodeficiency virus 1]
gi|306478067|gb|ADM89408.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q K I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLKVNIVTDSQYALGIIQAQPDR-SESELVSQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 537 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|306477847|gb|ADM89298.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|306477845|gb|ADM89297.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|306477763|gb|ADM89256.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 479 LQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E+++T W ++ + N
Sbjct: 537 PAHKGIGGNEKVDKLVSAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|306477849|gb|ADM89299.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEKVDKLV 552
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 553 SAG-----IRKVLFLDGID--KAQEDHEKYHTNWRAMASDFN 587
>gi|256011306|gb|ACU55509.1| pol protein [Human immunodeficiency virus 1]
Length = 1014
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEF 203
LQ++ Q + IITDS Q + + H P LV ++ EEL E +
Sbjct: 645 LQAIYLXLQDSGLEVNIITDS----QYALGIIHAQPDRSESELVSQIIEELIKKEK-IYL 699
Query: 204 LWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNE 263
W P+H GI GNE D+ I LF D + ++ E+++ W ++ +
Sbjct: 700 AWVPAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHNNWRAMASDF 752
Query: 264 N 264
N
Sbjct: 753 N 753
>gi|119507939|dbj|BAF42344.1| Pol [Human immunodeficiency virus 1]
Length = 1006
Score = 37.7 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 18/160 (11%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E +G A + ++ K LN+ + EL A+ +L Q + I+
Sbjct: 596 VDGAANRETKIGKAGYVTDRGRQKVVSLNETTNQ-KTELQAIQLAL----QDSESEVNIV 650
Query: 168 TDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQ 224
TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 651 TDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLSWVPAHKGIGGNEQVDKLVSS 708
Query: 225 AINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 709 G-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 741
>gi|374430057|gb|AEZ51321.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L S E V W
Sbjct: 637 LQAIYIALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLISKER-VYLSWV 694
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E+++ W ++ + N
Sbjct: 695 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHNNWKAMASDFN 745
>gi|374430037|gb|AEZ51306.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 630 LQAIYIALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEELIKKER-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ + ++ I LF D + ++ E++++ W ++ + N
Sbjct: 688 PAHKGIGGNEQVDK-----LVSNGIRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 738
>gi|328834004|gb|AEB52462.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGL----NKNASIFHAELFALLQSLLTIKQLGTCK 163
+DG+ N E +G + + +K K L N+ A + HA AL S L +
Sbjct: 595 VDGAANRETKLGKSGYVTDKGRQKVVSLTETTNQKAEL-HAIYLALQDSGLEVN------ 647
Query: 164 ALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 648 --IVTDSQYALGIIQAQPDR-SESELVNQIIEKLIEKEK-VYLSWVPAHKGIGGNEQVDK 703
Query: 221 EAKQAINNDVIHNELFFDEVKIIIK--KKYTEEWNT 254
I LF D + + +KY W T
Sbjct: 704 LVSSG-----IRKVLFLDGIDRAQEDHEKYHSNWRT 734
>gi|325634635|gb|ADZ32610.1| pol protein [Human immunodeficiency virus 1]
gi|325634675|gb|ADZ32645.1| pol protein [Human immunodeficiency virus 1]
Length = 1019
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 666 IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDK-- 721
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPS 276
+ ++ I LF D + ++ E++++ W ++ + N I I+ S
Sbjct: 722 ---LVSNGIRKVLFLDGID--KAQEDHEKYHSNWRAMASDFNLPPVIAKEIIAS 770
>gi|312602021|gb|ADQ92565.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L LQA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 594 IVTDSQYALGILQAQPDK-SESELVSQIIEELIKKER-VYLTWVPAHKGIGGNEQVDKLV 651
Query: 223 KQAINNDVIHNELFFDEVKIIIK--KKYTEEW 252
I LF D ++ + +KY W
Sbjct: 652 STG-----IRKVLFLDGIEKAQEDHEKYHNNW 678
>gi|289469874|gb|ADC96592.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGL---NKNASIFHAELFALLQSLLTIKQLGTCKA 164
+DG+ N E +G A + +K K L + HA AL S L +
Sbjct: 442 VDGAANRETKLGKAGYVTDKGRQKAVPLIDTTNQKTELHAIHLALQDSGLEVN------- 494
Query: 165 LIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
I+TDS L +QA + E+ LV ++ EEL E V W P+H GI GNE D+
Sbjct: 495 -IVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWVPAHKGIGGNEQVDKL 551
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E++++ W ++ + N
Sbjct: 552 VSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 587
>gi|256011612|gb|ACU55662.1| pol protein [Human immunodeficiency virus 1]
Length = 966
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 597 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESALVSQIIEQLINKEK-VYLAWV 654
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 655 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHEKYHSNWXAMASDFN 705
>gi|409180287|gb|AFV26291.1| truncated pol protein, partial [Simian immunodeficiency virus]
Length = 752
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 109 IDGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
+DGS N+Q G +T KD VK N AEL A +L KA
Sbjct: 604 VDGSCNKQSKAGKAGYVTDRGKDKVKVLEQTTNQ---QAELEAFAMALAD----SGPKAN 656
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAK 223
I+TDS L ++ E+P+V + + E + W P+H G+ GN+ D
Sbjct: 657 IVTDSQYVLGIVLGQPTESESPIVNEIINHMMLKEE-LYVAWVPAHKGLGGNQEVDHLVS 715
Query: 224 QAINN 228
Q I
Sbjct: 716 QGIRQ 720
>gi|254691745|gb|ACT79336.1| pol protein [Simian immunodeficiency virus]
Length = 293
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 137 KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEEL 194
+N + AEL+A+ L +K G+ + I+TDS + + M ++PLV+ + ++L
Sbjct: 23 ENTTNQQAELWAVD---LALKDSGS-QVNIVTDSQYAMGVLQGMPDQSDSPLVEEIIQKL 78
Query: 195 SSTESPVEFLWCPSHVGIAGNETADE 220
++ V W P+H GI GNE D+
Sbjct: 79 MQ-KNAVYLAWVPAHKGIGGNEEVDK 103
>gi|222428598|gb|ACM50208.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSTG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|134140562|gb|ABO61036.1| pol protein [Simian immunodeficiency virus]
Length = 1016
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 23/192 (11%)
Query: 73 SNYIAKTLSIENHPNIMRTLNPLYVRKY-----ENSNMKPT--IDGSKNEQG-VGCALTI 124
N+ A + P+I P +R++ E PT +DG+ N +G A +
Sbjct: 560 DNWWADSWQTTWIPDIEAVHTPYLLRQWFTLVPEPIETAPTYYVDGAANRNSKLGRAGYV 619
Query: 125 PEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FH 182
++ + L +N + AEL A+L +L+ G + ++TDS L I
Sbjct: 620 TDRGQERAINL-ENTTNQQAELQAILLALMD----GPPEMNLVTDSQYALGIITAAPEVS 674
Query: 183 ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKI 242
E+PLV+++ +++ S + + P+H GI GNE D + I LF + +
Sbjct: 675 ESPLVEQIIQQMLSKNA-IFISRVPAHKGIGGNEEVDHLVSRG-----IRQVLFMENIDP 728
Query: 243 IIK--KKYTEEW 252
++ +KY W
Sbjct: 729 AVEDHEKYHSNW 740
>gi|328158|gb|AAA44869.1| pol polyprotein (NH2-terminus uncertain), partial [Human
immunodeficiency virus 1]
Length = 1002
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 649 IVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 706
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
Q I LF D + ++ E+++ W ++ + N
Sbjct: 707 SQG-----IRKVLFLDGID--KAQEEHEKYHNNWRAMASDFN 741
>gi|73913913|gb|AAZ91882.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q K I+TDS L +QA + E+ LV ++ E+L + E V W
Sbjct: 630 LQAIQLALQDSGSKVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLINKEK-VYLSWV 687
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKW 256
P+H GI GNE D+ + I LF D + ++ E++++ W
Sbjct: 688 PAHKGIGGNEQVDKLVSKG-----IRRVLFLDGID--KAQEEHEKYHSNW 730
>gi|283521020|gb|ADB25242.1| pol protein [Human immunodeficiency virus 1]
Length = 991
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L +A I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 622 LQAILLALXDSGXEANIVTDSQYALGIIQAQPDK-SESELVNQIIEELIXKER-VYLSWV 679
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E +++ W ++ + N
Sbjct: 680 PAHKGIGGNEQVDKLVSSG-----IRKVLFLDGID--KAQEEHERYHSNWRAMASDFN 730
>gi|156037374|ref|XP_001586414.1| hypothetical protein SS1G_12398 [Sclerotinia sclerotiorum 1980]
gi|154697809|gb|EDN97547.1| hypothetical protein SS1G_12398 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 678
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKY 248
+ E + + + + W P H + GNE AD AK+A +E + + + IK+
Sbjct: 461 KAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMK 520
Query: 249 TEEW 252
+E W
Sbjct: 521 SENW 524
>gi|37935921|gb|AAO47164.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 109 IDGSKN-EQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALII 167
+DG+ N E G A + E+ K L + + AEL A+L +L K+ I+
Sbjct: 595 VDGAANRETKRGKAGYVTEQGKQKIINLEETTNQ-KAELMAVLIALQDSKE----TVNIV 649
Query: 168 TDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
TDS L I + ++P+V+++ EEL+ E W P+H GI NE D+ +
Sbjct: 650 TDSQYVLGIISSQPTQSDSPIVQQIIEELTKKER-TYITWVPAHKGIGXNEKIDKLVSKD 708
Query: 226 I 226
I
Sbjct: 709 I 709
>gi|221478|dbj|BAA00993.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ EEL E V W
Sbjct: 634 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEELIKKEK-VYLAWV 691
Query: 207 PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
P+H GI GNE D+ I LF D + ++ E++++ W ++ + N
Sbjct: 692 PAHKGIGGNEQVDKLVSAG-----IRKVLFLDGID--KAQEEHEKYHSNWRAMASDFN 742
>gi|407732177|gb|AFU26122.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L +QA N E+ +V ++ EEL E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGIIQAQPNR-SESEVVNQIIEELIRKEK-VYLSWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E +++ W ++ + N
Sbjct: 708 SSG-----IRKVLFLDGID--KAQEEHERYHSNWRTMASDFN 742
>gi|328714487|ref|XP_003245372.1| PREDICTED: hypothetical protein LOC100572687 [Acyrthosiphon pisum]
Length = 366
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 203 FLWCPSHVGIAGNETADEEAKQAINN-DVIH-NELFFDEVKIIIKKKYTEEWNTKWVNIS 260
++W SH I GNE +DE+A+QAI + D I N L + K + K T W W
Sbjct: 273 WIWILSHNQITGNERSDEKARQAITSPDAIRLNCLTLFDAK-LTAKTITNLWLQTW---K 328
Query: 261 PNENKLRKIKNSI 273
+KL +IKN+I
Sbjct: 329 QGTSKLNEIKNTI 341
>gi|256011234|gb|ACU55473.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEA 222
I+TDS L LQA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 650 IVTDSQYALGILQAQPDK-SESELVSQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLV 707
Query: 223 KQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNEN 264
I LF D + ++ E+++T W ++ + N
Sbjct: 708 SAG-----IRRVLFLDGID--KAQEDHEKYHTNWRAMASDFN 742
>gi|164415872|gb|AAU14940.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++L Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 630 LQAILLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVSQIIEQLIKKEK-VYLAWV 687
Query: 207 PSHVGIAGNETADEEAKQAI 226
P+H GI GNE D+ I
Sbjct: 688 PAHKGIGGNEQVDKLVSSGI 707
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,120,066
Number of Sequences: 23463169
Number of extensions: 159051262
Number of successful extensions: 415623
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 1111
Number of HSP's that attempted gapping in prelim test: 414959
Number of HSP's gapped (non-prelim): 1571
length of query: 277
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 137
effective length of database: 9,074,351,707
effective search space: 1243186183859
effective search space used: 1243186183859
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)