BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6532
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 21/126 (16%)
Query: 110 DGSKNEQ---GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DGS N Q G +T KD VK+ N AEL A +L K I
Sbjct: 442 DGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQ---QAELEAFAMALTD----SGPKVNI 494
Query: 167 ITDSLSCLQAIMNMFHENP------LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I DS Q +M + P +V ++ EE+ E+ + W P+H GI GN+ D
Sbjct: 495 IVDS----QYVMGIVASQPTESESKIVNQIIEEMIKKEA-IYVAWVPAHKGIGGNQEVDH 549
Query: 221 EAKQAI 226
Q I
Sbjct: 550 LVSQGI 555
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 560
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3K2P|A Chain A, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
pdb|3K2P|B Chain B, Hiv-1 Reverse Transcriptase Isolated Rnaseh Domain With
The Inhibitor Beta-Thujaplicinol Bound At The Active
Site
Length = 136
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 166 IITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L I E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 71 IVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 126
>pdb|1HRH|A Chain A, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
pdb|1HRH|B Chain B, Crystal Structure Of The Ribonuclease H Domain Of Hiv-1
Reverse Transcriptase
Length = 136
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ LV ++ E+L E V W P
Sbjct: 53 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK-VYLAWVP 111
Query: 208 SHVGIAGNETADE 220
+H GI GNE D+
Sbjct: 112 AHKGIGGNEQVDK 124
>pdb|2YKN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIH 232
P+H GI GNE D+ I + H
Sbjct: 537 PAHKGIGGNEQVDKLVSAGIRHHHHH 562
>pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 560
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 482 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 539
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 540 PAHKGIGGNEQVDK 553
>pdb|1O1W|A Chain A, Solution Structure Of The Rnase H Domain Of The Hiv-1
Reverse Transcriptase In The Presence Of Magnesium
Length = 138
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 73 IVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 128
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 482 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 539
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 540 PAHKGIGGNEQVDK 553
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 480 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 537
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 538 PAHKGIGGNEQVDK 551
>pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3T1A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3T1A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3TAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 563
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 482 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 539
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 540 PAHKGIGGNEQVDK 553
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 560
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3LP3|A Chain A, P15 Hiv Rnaseh Domain With Inhibitor Mk3
pdb|3LP3|B Chain B, P15 Hiv Rnaseh Domain With Inhibitor Mk3
Length = 138
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ LV ++ E+L E V W P
Sbjct: 55 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK-VYLAWVP 113
Query: 208 SHVGIAGNETADE 220
+H GI GNE D+
Sbjct: 114 AHKGIGGNEQVDK 126
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|2YKM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADEEAKQAINNDVIH 232
P+H GI GNE D+ I + H
Sbjct: 537 PAHKGIGGNEQVDKLVSAGIRHHHHH 562
>pdb|1RDH|A Chain A, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
pdb|1RDH|B Chain B, Crystallographic Analyses Of An Active Hiv-1 Ribonuclease
H Domain Show Structural Features That Distinguish It
From The Inactive Form
Length = 146
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ LV ++ E+L E V W P
Sbjct: 65 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK-VYLAWVP 123
Query: 208 SHVGIAGNETADE 220
+H GI GNE D+
Sbjct: 124 AHKGIGGNEQVDK 136
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 482 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 539
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 540 PAHKGIGGNEQVDK 553
>pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 558
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1HNI|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
pdb|1HNV|A Chain A, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|2HMI|A Chain A, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
Length = 558
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3DLK|A Chain A, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
Length = 556
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 480 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 537
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 538 PAHKGIGGNEQVDK 551
>pdb|2I5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 552
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3IG1|A Chain A, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
Length = 555
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|2ZE2|A Chain A, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|3QO9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
Length = 557
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1SV5|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 560
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|1S6P|A Chain A, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 560
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3JSM|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 558
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|2VG5|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 557
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1T03|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|1T05|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
pdb|1R0A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
Length = 558
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 560
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3QLH|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Manicol At The
Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 555
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 480 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 537
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 538 PAHKGIGGNEQVDK 551
>pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|3HVT|A Chain A, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
Length = 556
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|C Chain C, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
pdb|3ITH|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|C Chain C, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 560
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|4DG1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Polymorphism Mutation K172a And K173a
Length = 549
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETAD 219
P+H GI GNE D
Sbjct: 537 PAHKGIGGNEQVD 549
>pdb|2ZD1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|4H4M|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4G1Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
pdb|4I7G|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 428
Site
pdb|4IFV|A Chain A, Detecting Allosteric Sites Of Hiv-1 Reverse Transcriptase
By X-ray Crystallographic Fragment Screening
pdb|4IFY|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 507
Site
pdb|4IG3|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 557
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|1HMV|A Chain A, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1TV6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|C Chain C, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|E Chain E, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|G Chain G, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 560
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3IRX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate)
Length = 558
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 482 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 539
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 540 PAHKGIGGNEQVDK 553
>pdb|2IAJ|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 560
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 537 PAHKGIGGNEQVDK 550
>pdb|3KLF|A Chain A, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|E Chain E, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|I Chain I, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|M Chain M, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 557
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|3BGR|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|4I2Q|A Chain A, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
Length = 557
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|4B3O|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+TDS L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 495 IVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENP--LVKRVQEELSSTESPVEFLWCP 207
LQ++ Q + I+TDS L I E+ LV ++ E+L E V W P
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDESESELVNQIIEQLIKKEK-VYLAWVP 537
Query: 208 SHVGIAGNETADE 220
+H GI GNE D+
Sbjct: 538 AHKGIGGNEQVDK 550
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 479 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 536
Query: 207 PSHVGIAGNETADE 220
P+H GI GN+ D+
Sbjct: 537 PAHKGIGGNQQVDK 550
>pdb|2OPR|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 547
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 478 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 535
Query: 207 PSHVGIAGNE 216
P+H GI GNE
Sbjct: 536 PAHKGIGGNE 545
>pdb|3HYF|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Active Site Inhibitor
pdb|3QIN|A Chain A, Crystal Structure Of Hiv-1 Rnase H P15 With Engineered E.
Coli Loop And Pyrimidinol Carboxylic Acid Inhibitor
pdb|3QIO|A Chain A, Crystal Structure Of Hiv-1 Rnase H With Engineered E. Coli
Loop And N- Hydroxy Quinazolinedione Inhibitor
Length = 150
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 150 LQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVKRVQEE 193
LQ++ Q + I+TDS L I H + P LV ++ E+
Sbjct: 54 LQAIYLALQDSGLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQ 113
Query: 194 LSSTESPVEFLWCPSHVGIAGNETADE 220
L E V W P+H GI GNE D+
Sbjct: 114 LIKKEK-VYLAWVPAHKGIGGNEQVDK 139
>pdb|3V4I|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V4I|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V6D|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
Length = 556
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+T+S L +QA + E+ LV ++ E+L E V W
Sbjct: 481 LQAIYLALQDSGLEVNIVTNSQYALGIIQAQPDK-SESELVNQIIEQLIKKEK-VYLAWV 538
Query: 207 PSHVGIAGNETADE 220
P+H GI GNE D+
Sbjct: 539 PAHKGIGGNEQVDK 552
>pdb|4B3Q|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 166 IITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
I+T+S L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 495 IVTNSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>pdb|3AA3|A Chain A, A52l E. Coli Rnase Hi
Length = 155
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL AL+ +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMALIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|4B3P|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 170 SLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADE 220
+L +QA + E+ LV ++ E+L E V W P+H GI GNE D+
Sbjct: 502 ALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDK 550
>pdb|1RBU|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH----------ENPLVKRVQ--E 192
EL A + +L +K+ C+ ++ TDS Q I H +N VK V +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADNKPVKNVDLWQ 105
Query: 193 ELSST--ESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
L + + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|2OPP|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 542
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 150 LQSLLTIKQLGTCKALIITDS---LSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWC 206
LQ++ Q + I+TDS L +QA + E+ LV ++ E+L E V W
Sbjct: 476 LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQ-SESELVNQIIEQLIKKEK-VYLAWV 533
Query: 207 PSHVGIAGN 215
P+H GI GN
Sbjct: 534 PAHKGIGGN 542
>pdb|1GOB|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 155
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS QAI H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQAITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|3AA2|A Chain A, A52i E. Coli Rnase Hi
Length = 155
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A++ +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAIIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|2E4L|A Chain A, Thermodynamic And Structural Analysis Of Thermolabile
Rnase Hi From Shewanella Oneidensis Mr-1
Length = 158
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 23/115 (20%)
Query: 127 KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH---- 182
K++ F L N + EL A + +L +K+ CK ++ +DS Q IM H
Sbjct: 35 KEMSDGFSLTTNNRM---ELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKK 89
Query: 183 -------ENP-----LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
P L KR+ + ++ +++ W H G A NE D+ A+ A
Sbjct: 90 KGWMTSNRTPVKNVDLWKRLDK--AAQLHQIDWRWVKGHAGHAENERCDQLARAA 142
>pdb|3AA4|A Chain A, A52v E.Coli Rnase Hi
Length = 155
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A++ +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAVIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|3AA5|X Chain X, A52f E.Coli Rnase Hi
Length = 155
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAFIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RBS|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--ACEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RBR|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--PCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RNH|A Chain A, Structure Of Ribonuclease H Phased At 2 Angstroms
Resolution By Mad Analysis Of The Selenomethionyl
Protein
Length = 155
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELXAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAXNPTLEDTGYQVEV 155
>pdb|1RDA|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RCH|A Chain A, Solution Nmr Structure Of Ribonuclease Hi From Escherichia
Coli, 8 Structures
pdb|1RDD|A Chain A, Crystal Structure Of Escherichia Coli Rnase Hi In Complex
With Mg2+ At 2.8 Angstroms Resolution: Proof For A
Single Mg2+ Site
pdb|2RN2|A Chain A, Structural Details Of Ribonuclease H From Escherichia Coli
As Refined To An Atomic Resolution
Length = 155
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1LAW|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYIRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RBT|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH----------ENPLVKRVQ--E 192
EL A + +L +K+ C+ ++ TDS Q I H + VK V +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADGKPVKNVDLWQ 105
Query: 193 ELSST--ESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
L + + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|2Z1G|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105K)
Length = 155
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS + I H + P L K
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWK 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1LAV|A Chain A, Stabilization Of Escherichia Coli Ribonuclease Hi By
Cavity- Filling Mutations Within A Hydrophobic Core
Length = 155
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYLRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1GOC|A Chain A, Cooperative Stabilization Of Escherichia Coli Ribonuclease
Hi By Insertion Of Gly-80b And Gly-77-> Ala Substitution
Length = 156
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHEN-----------------PLV 187
EL A + +L +K+ C+ ++ TDS QAI + N L
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQAITQGWIHNWKKRGWKTADKKPVKNVDLW 105
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
+R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 QRLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 156
>pdb|1RBV|A Chain A, Structural Study Of Mutants Of Escherichia Coli
Ribonuclease Hi With Enhanced Thermostability
Length = 155
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS Q I H P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADAKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|2Z1I|A Chain A, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
pdb|2Z1I|B Chain B, Crystal Structure Of E.Coli Rnase Hi Surface Charged
Mutant(Q4rT40EQ72HQ76KQ80ET92KQ105KQ113RQ115K)
Length = 155
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ TDS + I H + P L K
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTDSHYVRKGITEWIHNWKKRGWKKADKKPVKNVDLWK 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGRHK--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1JL1|A Chain A, D10a E. Coli Ribonuclease Hi
Length = 155
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ + ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE ADE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERADELARAAAMNPTLEDTGYQVEV 155
>pdb|1F21|A Chain A, Divalent Metal Cofactor Binding In The Kinetic Folding
Trajectory Of E. Coli Ribonuclease Hi
Length = 155
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ + ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE ADE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERADELARAAAMNPTLEDTGYQVEV 155
>pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ + ++ TDS Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HAEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE ADE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERADELARAAAMNPTLEDTGYQVEV 155
>pdb|1RDB|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
+L A + +L +K+ C+ ++ TDS Q I H + P L +
Sbjct: 48 QLMAAIVALEALKE--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 147 FALLQSLLTIKQLGT-CKALIITDSLSCLQAIMNMFH-----------ENP-----LVKR 189
AL+ +++ ++ L C+ ++ TDS Q I H + P L +R
Sbjct: 47 MALMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKARGWKTADKKPVKNVDLWQR 106
Query: 190 VQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 107 LDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|1RDC|A Chain A, Crystal Structures Of Ribonuclease Hi Active Site Mutants
From Escherichia Coli
Length = 155
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 145 ELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH-----------ENP-----LVK 188
EL A + +L +K+ C+ ++ T+S Q I H + P L +
Sbjct: 48 ELMAAIVALEALKE--HCEVILSTNSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105
Query: 189 RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
R+ L + +++ W H G NE DE A+ A N + + + EV
Sbjct: 106 RLDAALGQHQ--IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155
>pdb|2ZQB|A Chain A, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|B Chain B, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|C Chain C, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
pdb|2ZQB|D Chain D, Crystal Structure Of A Psychrotrophic Rnasehi Variant With
Sextuple Thermostabilizing Mutations
Length = 158
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 23/115 (20%)
Query: 127 KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH---- 182
K++ F L N + EL A + +L +K+ CK ++ +DS Q IM H
Sbjct: 35 KEMSGGFSLTTNNRM---ELLAPIVALEALKE--PCKIILTSDSQYVRQGIMTWIHGWKK 89
Query: 183 -------ENP-----LVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225
P L KR+ + ++ +++ W H G A NE + A+ A
Sbjct: 90 NGWMTSNGTPVKNVDLWKRLDK--AAQLHQIDWRWVKGHAGHAENERCHQLARAA 142
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 41 RLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNY--IAKTLSIENHPNIMRTLNPLYVR 98
+ATG R+ + + E E +P+L K ++ Y IA T + E+ +Y
Sbjct: 252 EVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED----------IYKA 301
Query: 99 KYEN-SNMKPTIDG-SKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
Y++ N+K G S +GCA+ + + + + + + +L LLQ L +
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 157 KQLGTCKAL 165
+G + L
Sbjct: 362 PHVGDIRQL 370
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 41 RLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNY--IAKTLSIENHPNIMRTLNPLYVR 98
+ATG R+ + + E E +P+L K ++ Y IA T + E+ +Y
Sbjct: 252 EVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATED----------IYKA 301
Query: 99 KYEN-SNMKPTIDG-SKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTI 156
Y++ N+K G S +GCA+ + + + + + + +L LLQ L +
Sbjct: 302 FYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHAL 361
Query: 157 KQLGTCKAL 165
+G + L
Sbjct: 362 PHVGDIRQL 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,715,571
Number of Sequences: 62578
Number of extensions: 300252
Number of successful extensions: 959
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 106
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)