Query psy6532
Match_columns 277
No_of_seqs 210 out of 1583
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:29:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 4.1E-26 1.4E-30 185.6 12.3 126 102-229 5-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 4.3E-26 1.5E-30 183.8 9.3 122 103-229 3-145 (146)
3 2kq2_A Ribonuclease H-related 99.9 5.5E-26 1.9E-30 183.6 7.6 128 102-230 4-139 (147)
4 3qio_A GAG-POL polyprotein; RN 99.9 1E-24 3.4E-29 176.6 12.4 120 102-228 10-147 (150)
5 1jl1_A Ribonuclease HI; RNAse 99.9 5.5E-25 1.9E-29 179.2 9.9 122 104-230 4-145 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.9 5.9E-25 2E-29 179.6 9.6 120 104-228 6-145 (158)
7 3p1g_A Xenotropic murine leuke 99.9 1.4E-24 4.7E-29 178.4 10.7 124 102-229 21-157 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 2.5E-24 8.7E-29 177.2 8.1 124 103-230 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.9 1.2E-22 4E-27 166.7 12.7 124 103-228 6-163 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.9 2.3E-21 7.9E-26 154.0 11.8 119 104-228 3-137 (140)
11 3hst_B Protein RV2228C/MT2287; 99.9 5E-21 1.7E-25 152.6 12.1 120 104-229 3-134 (141)
12 2ehg_A Ribonuclease HI; RNAse 99.8 1.1E-20 3.9E-25 152.4 13.4 119 105-229 2-135 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.3E-20 4.4E-25 182.3 12.8 118 102-226 434-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 1.2E-20 4E-25 182.7 9.7 117 102-225 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.5 4.5E-15 1.5E-19 118.5 5.2 116 102-220 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.4 7.7E-13 2.6E-17 103.9 6.1 79 101-181 2-84 (134)
17 1rw3_A POL polyprotein; RNA an 74.0 3.1 0.00011 38.3 4.7 75 102-180 344-428 (455)
18 2z3g_A Blasticidin-S deaminase 70.8 7.3 0.00025 29.6 5.3 54 117-171 28-81 (130)
19 2zd1_B P51 RT; P51/P66, hetero 70.5 6.9 0.00023 35.8 6.1 74 102-178 322-404 (428)
20 2fr5_A Cytidine deaminase; tet 62.8 15 0.00051 28.5 5.7 54 117-171 37-92 (146)
21 1uwz_A Cytidine deaminase; CDD 58.8 20 0.00069 27.3 5.8 54 117-171 25-80 (136)
22 2d30_A Cytidine deaminase; pur 48.2 27 0.00092 26.8 4.9 54 117-171 34-89 (141)
23 1r5t_A Cytidine deaminase; zin 42.6 43 0.0015 25.6 5.3 55 117-171 33-89 (142)
24 3oj6_A Blasticidin-S deaminase 39.3 46 0.0016 26.1 5.0 52 117-169 52-103 (158)
25 3mpz_A Cytidine deaminase; ssg 37.1 44 0.0015 25.9 4.6 53 117-170 47-101 (150)
26 3dmo_A Cytidine deaminase; str 32.1 62 0.0021 24.7 4.6 55 117-171 33-90 (138)
27 3n4p_A Terminase subunit UL89 28.3 1.9E+02 0.0064 24.6 7.3 101 102-211 60-176 (279)
28 2nx8_A TRNA-specific adenosine 27.9 74 0.0025 25.2 4.6 53 117-170 37-92 (179)
29 3r2n_A Cytidine deaminase; str 26.7 80 0.0027 24.0 4.4 53 117-170 32-86 (138)
30 3b8f_A Putative blasticidin S 26.4 74 0.0025 24.2 4.2 53 117-170 24-78 (142)
31 2b3j_A TRNA adenosine deaminas 25.6 1.1E+02 0.0037 23.6 5.2 53 117-170 28-83 (159)
32 2a8n_A Cytidine and deoxycytid 25.2 1E+02 0.0035 23.2 4.9 52 117-169 25-79 (144)
33 1wkq_A Guanine deaminase; doma 24.1 98 0.0033 24.2 4.6 54 116-170 32-88 (164)
34 1z3a_A TRNA-specific adenosine 23.7 74 0.0025 24.9 3.9 51 117-168 30-83 (168)
35 1wwr_A TRNA adenosine deaminas 23.1 1.2E+02 0.0042 23.7 5.1 54 117-171 44-100 (171)
36 1ctt_A Cytidine deaminase; hyd 22.8 1.3E+02 0.0044 26.0 5.5 55 117-171 210-267 (294)
37 2zd1_A Reverse transcriptase/r 21.7 1.1E+02 0.0037 28.7 5.3 76 102-180 324-408 (557)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=4.1e-26 Score=185.60 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=100.5
Q ss_pred CCCceeeecCCCCCCC-----eeEEEEEcCCCe-EEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHH
Q psy6532 102 NSNMKPTIDGSKNEQG-----VGCALTIPEKDI-VKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQ 175 (277)
Q Consensus 102 ~~~~~iytDGS~~~~~-----~G~g~v~~~~~~-~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~ 175 (277)
...+.||||||+.+++ +|+|+|+.+++. ..+..+...+||+.||+.|++.||+.+.+.+..+|.|+|||+++++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 3458899999987432 799998765432 2344555568999999999999999999888899999999999999
Q ss_pred HHhccC--------C-C-------ChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy6532 176 AIMNMF--------H-E-------NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229 (277)
Q Consensus 176 ~l~~~~--------~-~-------~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 229 (277)
+|.++. . . ..++++|..++. +..|.|.|||||+|+++||+||+||++|+..+
T Consensus 85 ~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 85 GITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc--CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 998742 1 1 125666666655 45799999999999999999999999998764
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.3e-26 Score=183.78 Aligned_cols=122 Identities=19% Similarity=0.152 Sum_probs=95.7
Q ss_pred CCceeeecCCCCCC--CeeEEEEEcCCCeEE--eecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHh
Q psy6532 103 SNMKPTIDGSKNEQ--GVGCALTIPEKDIVK--RFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIM 178 (277)
Q Consensus 103 ~~~~iytDGS~~~~--~~G~g~v~~~~~~~~--~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~ 178 (277)
..+.+|||||+..+ ..|+|+++..++... +... +.+||+.||+.|++.||+.+.+ ..++.|+|||++++++|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 45899999998753 389998876554322 2222 3689999999999999999976 589999999999999998
Q ss_pred c-cC--------C--------CChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy6532 179 N-MF--------H--------ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229 (277)
Q Consensus 179 ~-~~--------~--------~~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 229 (277)
+ +. . ...+++++.+++.+ ..|.|.|||||+|+++||+||+|||+|+...
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~--~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL--HRVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH--SEEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh--CceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 8 31 0 12356677776664 4699999999999999999999999998754
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.92 E-value=5.5e-26 Score=183.56 Aligned_cols=128 Identities=17% Similarity=0.104 Sum_probs=100.1
Q ss_pred CCCceeeecCCCCCCCeeEEEEEcC-CCeE-Eee-cC--CC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHH
Q psy6532 102 NSNMKPTIDGSKNEQGVGCALTIPE-KDIV-KRF-GL--NK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCL 174 (277)
Q Consensus 102 ~~~~~iytDGS~~~~~~G~g~v~~~-~~~~-~~~-~~--~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai 174 (277)
...+.+|||||+.++.+|+|+|+.+ +... ... +. +. ..||+.||+.|++.||+.+.+.+. +|.|+|||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 4568999999999877999998764 4322 222 22 22 369999999999999999888777 999999999988
Q ss_pred HHHhccCCC-ChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCCc
Q psy6532 175 QAIMNMFHE-NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDV 230 (277)
Q Consensus 175 ~~l~~~~~~-~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~~ 230 (277)
+.+.+.+.. ++....+.+++++....|.|.|||||+|+++||+||+|||+|+....
T Consensus 83 ~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 83 FWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 888776653 34444555555443338999999999999999999999999998773
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=1e-24 Score=176.64 Aligned_cols=120 Identities=24% Similarity=0.293 Sum_probs=94.0
Q ss_pred CCCceeeecCCCCC--CCeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 102 NSNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 102 ~~~~~iytDGS~~~--~~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
...+.+|||||+.. +..|+|+++.++.... ... ..+||+.||+.|++.||+.+ ..++.|+|||++++++|++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~-~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKV-VTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEE-EEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEE-EeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 45689999999874 3488998887654332 223 46899999999999999985 4799999999999999987
Q ss_pred cC---C-------------CChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcC
Q psy6532 180 MF---H-------------ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228 (277)
Q Consensus 180 ~~---~-------------~~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 228 (277)
+. . ...+.+++.+++. ....|.|.|||||+|++|||+||+||++|+..
T Consensus 84 w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 84 WIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHT-TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 62 0 1123445544443 46789999999999999999999999999875
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.92 E-value=5.5e-25 Score=179.18 Aligned_cols=122 Identities=23% Similarity=0.290 Sum_probs=95.8
Q ss_pred CceeeecCCCCCC--CeeEEEEEcCCCeE--EeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 104 NMKPTIDGSKNEQ--GVGCALTIPEKDIV--KRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 104 ~~~iytDGS~~~~--~~G~g~v~~~~~~~--~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
.+.+|||||+.++ ..|+|+|+.+++.. ..... +.+||+.||+.|++.||+.+.+ ..++.|+|||++++++|.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 5789999999753 38999887643322 22223 3678999999999999999876 3799999999999999997
Q ss_pred c--------CC-------C-ChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCCc
Q psy6532 180 M--------FH-------E-NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDV 230 (277)
Q Consensus 180 ~--------~~-------~-~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~~ 230 (277)
| +. . ..+.++|.++++ ...|.|.|||||+|+++||.||+||++|+..+.
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT--TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc--cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 3 11 1 135566666554 368999999999999999999999999998764
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.91 E-value=5.9e-25 Score=179.57 Aligned_cols=120 Identities=26% Similarity=0.332 Sum_probs=94.6
Q ss_pred CceeeecCCCCC--CCeeEEEEEcCCCeE--EeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 104 NMKPTIDGSKNE--QGVGCALTIPEKDIV--KRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 104 ~~~iytDGS~~~--~~~G~g~v~~~~~~~--~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
.+.||||||+.+ +.+|+|+|+.+++.. ..... +.+||+.||+.|++.||+.+.+ ..+|.|+|||++++++|.+
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 82 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIMT 82 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHHH
Confidence 478999999974 348999887544322 22223 3579999999999999999865 3899999999999999988
Q ss_pred --------cCC-------CC-hHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcC
Q psy6532 180 --------MFH-------EN-PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228 (277)
Q Consensus 180 --------~~~-------~~-~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 228 (277)
.+. .+ .+++++.++++ ...|.|.|||||+|+++||.||+||++|+..
T Consensus 83 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 83 WIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ--LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT--TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHccccccCCCcccCHHHHHHHHHHHc--cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 221 11 34566666665 3589999999999999999999999999987
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.91 E-value=1.4e-24 Score=178.38 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=94.9
Q ss_pred CCCceeeecCCCC--CCCeeEEEEEcC-CCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHh
Q psy6532 102 NSNMKPTIDGSKN--EQGVGCALTIPE-KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIM 178 (277)
Q Consensus 102 ~~~~~iytDGS~~--~~~~G~g~v~~~-~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~ 178 (277)
...+.+|||||+. ++..|+|+++.. ++.....+....+||+.||+.|++.||+.+ ...++.|||||+++++.+-
T Consensus 21 ~~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw 97 (165)
T 3p1g_A 21 DADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAH 97 (165)
T ss_dssp TCSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHH
T ss_pred CCCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhh
Confidence 3458999999997 345888887654 443333345567899999999999999999 3689999999999999993
Q ss_pred ccCC----CC-hHHHHHHHHHhcCCCCeEEEEecCCCC-----CccchHHHHHHHHhhcCC
Q psy6532 179 NMFH----EN-PLVKRVQEELSSTESPVEFLWCPSHVG-----IAGNETADEEAKQAINND 229 (277)
Q Consensus 179 ~~~~----~~-~~~~~i~~~l~~~~~~v~~~WvpgH~g-----~~gNe~AD~lAk~a~~~~ 229 (277)
.... .+ .+++++.+.+. .+..|.|.|||||+| ++|||+||+|||+|+...
T Consensus 98 ~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 98 VHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp SCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 1111 12 23444444333 467899999999999 999999999999999876
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.90 E-value=2.5e-24 Score=177.20 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=96.0
Q ss_pred CCceeeecCCCCCC--CeeEEEEEcCCCeE-EeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 103 SNMKPTIDGSKNEQ--GVGCALTIPEKDIV-KRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 103 ~~~~iytDGS~~~~--~~G~g~v~~~~~~~-~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
..+.||||||+.++ ..|+|+|+.+++.. ...+....+||+.||+.|++.||+.+.+. .+|.|+|||++++++|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 45789999999853 48999987543322 11111236799999999999999988653 589999999999999998
Q ss_pred -c--------C-CC------C-hHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCCc
Q psy6532 180 -M--------F-HE------N-PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDV 230 (277)
Q Consensus 180 -~--------~-~~------~-~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~~ 230 (277)
| + .. + .++++|.+++.. ..|.|.|||||+|+++||.||+|||+|+....
T Consensus 85 ~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 85 GWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 2 2 11 1 256667666653 58999999999999999999999999998874
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.89 E-value=1.2e-22 Score=166.72 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=91.3
Q ss_pred CCceeeecCCCCC--CC-----eeEEEEEcCCC----eEEeecC-CCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 103 SNMKPTIDGSKNE--QG-----VGCALTIPEKD----IVKRFGL-NKNASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 103 ~~~~iytDGS~~~--~~-----~G~g~v~~~~~----~~~~~~~-~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
..+++|||||+.. ++ +|+|+|+..++ ....+.. ..+.+++.||+.|+..||+.+.+.+ .+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 4578999999873 22 79999874322 2223322 2467888999999999998877644 579999999
Q ss_pred HHHHHHHhccC---------C------CC-hHHHHHHHHHhcCCCCeEEEEecCCCC------CccchHHHHHHHHhhcC
Q psy6532 171 LSCLQAIMNMF---------H------EN-PLVKRVQEELSSTESPVEFLWCPSHVG------IAGNETADEEAKQAINN 228 (277)
Q Consensus 171 ~~ai~~l~~~~---------~------~~-~~~~~i~~~l~~~~~~v~~~WvpgH~g------~~gNe~AD~lAk~a~~~ 228 (277)
++++++|..|. . .+ .+++++.+++.. ...|.|.|||||+| .+|||+||+||++|+..
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~-~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSM-KPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHH-CTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhC-CCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 99999997532 1 11 255666666654 45799999999999 46899999999999853
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.86 E-value=2.3e-21 Score=154.03 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=93.6
Q ss_pred CceeeecCCCCC--CCeeEEEEEcC--CCeEE--eecCCCCcchhHHHHHHHHHHHHHHhhhCCC----ceEEEeCCHHH
Q psy6532 104 NMKPTIDGSKNE--QGVGCALTIPE--KDIVK--RFGLNKNASIFHAELFALLQSLLTIKQLGTC----KALIITDSLSC 173 (277)
Q Consensus 104 ~~~iytDGS~~~--~~~G~g~v~~~--~~~~~--~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~----~v~I~tDS~~a 173 (277)
.+.+|||||+.. +.+|+|+++.+ +.... ...+ +.+||+.||+.|++.||+.+.+.+.. ++.|+|||+++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 478999999874 34899988754 44332 2222 35799999999999999999987777 99999999999
Q ss_pred HHHHhccCC-CCh----HHHHHHHH-HhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcC
Q psy6532 174 LQAIMNMFH-ENP----LVKRVQEE-LSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228 (277)
Q Consensus 174 i~~l~~~~~-~~~----~~~~i~~~-l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~ 228 (277)
++.+++++. .++ +..++.++ +.+ ...|.|.||| +++||.||+|||+|+..
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~-~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMER-VPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHH-CTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcC-CCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 999999764 332 34556666 553 3589999999 69999999999999864
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5e-21 Score=152.56 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=93.8
Q ss_pred CceeeecCCCCCC--CeeEEEEEcC---CCeEE--eecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHH
Q psy6532 104 NMKPTIDGSKNEQ--GVGCALTIPE---KDIVK--RFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQA 176 (277)
Q Consensus 104 ~~~iytDGS~~~~--~~G~g~v~~~---~~~~~--~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~ 176 (277)
.+.+|||||+.++ .+|+|+++.+ +.... ...+ +.+||+.||+.|++.||+.+.+.+..++.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 4789999998743 5899988754 22322 2222 3689999999999999999999888999999999999999
Q ss_pred HhccCC-CChH----HHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy6532 177 IMNMFH-ENPL----VKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229 (277)
Q Consensus 177 l~~~~~-~~~~----~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 229 (277)
+++.+. .++. ..++++++. ....|.|.||| .++|+.||+||++|+...
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~-~~~~v~~~~V~----~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALAS-QFRRINYEWVP----RARNTYADRLANDAMDAA 134 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHT-TSSEEEEEECC----GGGCHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEcC----CcccHHHHHHHHHHHHHh
Confidence 998653 4442 234444443 45789999999 589999999999998765
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.85 E-value=1.1e-20 Score=152.38 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=94.5
Q ss_pred ceeeecCCCC--C-CCeeE-EEEEcC-CCeEEee--cCC---CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHH
Q psy6532 105 MKPTIDGSKN--E-QGVGC-ALTIPE-KDIVKRF--GLN---KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCL 174 (277)
Q Consensus 105 ~~iytDGS~~--~-~~~G~-g~v~~~-~~~~~~~--~~~---~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai 174 (277)
+.+|||||+. + +.+|+ |+++.+ |.....+ ..+ +..||+.||+.|++.||+.+.+.+..++.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999987 2 45885 987764 4443222 222 37899999999999999999998889999999999999
Q ss_pred HHHhccCCC-C----hHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy6532 175 QAIMNMFHE-N----PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229 (277)
Q Consensus 175 ~~l~~~~~~-~----~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 229 (277)
+.+++++.. + .+.+++..++++. .|.|.|||+ ++|+.||+||++|+...
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999998642 2 2456666666654 599999997 69999999999999766
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.83 E-value=1.3e-20 Score=182.28 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=95.9
Q ss_pred CCCceeeecCCCCCC--CeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 102 NSNMKPTIDGSKNEQ--GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 102 ~~~~~iytDGS~~~~--~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
...+.+|||||+..+ ..|+|+++..++.. .... ..+||+.||+.|++.||+. +..++.|+|||++|++++++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHT
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhc
Confidence 456899999998743 37899988766533 2222 3679999999999999988 56899999999999999998
Q ss_pred cCC--CChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhh
Q psy6532 180 MFH--ENPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226 (277)
Q Consensus 180 ~~~--~~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~ 226 (277)
+.. ..++.+++.+++.+ ...|.|.|||||+|++|||+||+||++|+
T Consensus 508 ~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 763 45677777666553 57799999999999999999999999885
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.82 E-value=1.2e-20 Score=182.65 Aligned_cols=117 Identities=25% Similarity=0.278 Sum_probs=92.7
Q ss_pred CCCceeeecCCCCC--CCeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 102 NSNMKPTIDGSKNE--QGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 102 ~~~~~iytDGS~~~--~~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
...+.+|||||+.. +..|+|+++..++.... +. ..+||+.||+.|++.||+.+ ..++.|+|||++|++++++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTT
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhc
Confidence 45689999999864 33788988876553322 22 46899999999999999998 5799999999999999999
Q ss_pred cCCC--ChHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHh
Q psy6532 180 MFHE--NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQA 225 (277)
Q Consensus 180 ~~~~--~~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a 225 (277)
+... ..+.+++.+.+.+ ...|.|.|||||+|++|||+||+||++|
T Consensus 511 ~~~~~~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 511 QPDKSESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCSEESSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCccCCHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 7753 4567776655544 3579999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.53 E-value=4.5e-15 Score=118.49 Aligned_cols=116 Identities=14% Similarity=0.038 Sum_probs=84.6
Q ss_pred CCCceeeecCCCCC--CCeeEEEEEcC-CCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHh
Q psy6532 102 NSNMKPTIDGSKNE--QGVGCALTIPE-KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIM 178 (277)
Q Consensus 102 ~~~~~iytDGS~~~--~~~G~g~v~~~-~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~ 178 (277)
..-+.+|||||+.. +.+|+|+|+.. +........-..+||+.||+.|++.||+.+.+.+. ++.|+|||+++++.+.
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 34578999999874 34899998863 44333222122579999999999999999998776 9999999999999999
Q ss_pred ccCCC--------C-hHHHHHHHH---HhcCCCCeEEEEecCCCCCccchHHHH
Q psy6532 179 NMFHE--------N-PLVKRVQEE---LSSTESPVEFLWCPSHVGIAGNETADE 220 (277)
Q Consensus 179 ~~~~~--------~-~~~~~i~~~---l~~~~~~v~~~WvpgH~g~~gNe~AD~ 220 (277)
+.+.. + .+.+.+.++ ++. ..++...++-|++..||..||.
T Consensus 88 ~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 88 DKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred cCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 87621 1 134444433 333 4456667888888999999884
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.35 E-value=7.7e-13 Score=103.93 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred cCCCceeeecCCCCC--CCeeEEEEEcC-CCeEE-eecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHH
Q psy6532 101 ENSNMKPTIDGSKNE--QGVGCALTIPE-KDIVK-RFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQA 176 (277)
Q Consensus 101 e~~~~~iytDGS~~~--~~~G~g~v~~~-~~~~~-~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~ 176 (277)
|.....+|||||+.. +..|+|.|+.. +.... ...+ ..+||++||++|++.||+.+.+.+.. +.|+|||++|++.
T Consensus 2 ep~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~w 79 (134)
T 4htu_A 2 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKW 79 (134)
T ss_dssp CCCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHH
T ss_pred CccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHH
Confidence 455678999999874 34888655544 44332 2233 36899999999999999999886544 8999999999999
Q ss_pred HhccC
Q psy6532 177 IMNMF 181 (277)
Q Consensus 177 l~~~~ 181 (277)
+.++.
T Consensus 80 i~~~~ 84 (134)
T 4htu_A 80 VKDKK 84 (134)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98754
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=74.05 E-value=3.1 Score=38.31 Aligned_cols=75 Identities=8% Similarity=-0.114 Sum_probs=47.0
Q ss_pred CCCceeeecCCCCCCCeeEEEEEcC--CC--eE--EeecC---CCCcchhHHHHHHHHHHHHHHhhh-CCCceEEEeCCH
Q psy6532 102 NSNMKPTIDGSKNEQGVGCALTIPE--KD--IV--KRFGL---NKNASIFHAELFALLQSLLTIKQL-GTCKALIITDSL 171 (277)
Q Consensus 102 ~~~~~iytDGS~~~~~~G~g~v~~~--~~--~~--~~~~~---~~~~t~~~aEl~Ai~~aL~~a~~~-~~~~v~I~tDS~ 171 (277)
...+.+|||+|.. +.| |+.... +. .. .+..+ ..+-+.++-|++||..|++..... ...++.|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 4567899999843 233 233221 11 11 11122 234567899999999999888754 457999999996
Q ss_pred HHHHHHhcc
Q psy6532 172 SCLQAIMNM 180 (277)
Q Consensus 172 ~ai~~l~~~ 180 (277)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 65555543
No 18
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=70.77 E-value=7.3 Score=29.55 Aligned_cols=54 Identities=15% Similarity=0.000 Sum_probs=38.3
Q ss_pred CeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|++........+.....||..||..|... -......+.+++|..
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~~ 81 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNEN 81 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETTT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECCC
Confidence 489999888888776555543334578999999999874 223456778888753
No 19
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=70.52 E-value=6.9 Score=35.83 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCceeeecCCCCCCCeeEEEEEcCC--CeEEe--ecCCCCcchhHHHHHH-HHHHHHHHhhh--C--CCceEEEeCCHH
Q psy6532 102 NSNMKPTIDGSKNEQGVGCALTIPEK--DIVKR--FGLNKNASIFHAELFA-LLQSLLTIKQL--G--TCKALIITDSLS 172 (277)
Q Consensus 102 ~~~~~iytDGS~~~~~~G~g~v~~~~--~~~~~--~~~~~~~t~~~aEl~A-i~~aL~~a~~~--~--~~~v~I~tDS~~ 172 (277)
...+.++||+|.. + ++|+++.+. ....+ +....+...++-|++| +..||+..... | +..++++||.+.
T Consensus 322 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 5668999999943 2 345555443 22222 2223333445566666 99999876543 3 456788999987
Q ss_pred HHHHHh
Q psy6532 173 CLQAIM 178 (277)
Q Consensus 173 ai~~l~ 178 (277)
......
T Consensus 399 ~~~~~~ 404 (428)
T 2zd1_B 399 ETWWTE 404 (428)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 654443
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=62.77 E-value=15 Score=28.45 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=38.6
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|+......... +.....||..||..|... -......+.|++|..
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 589999888888776554432 223468999999999875 333457889998853
No 21
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=58.83 E-value=20 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=38.0
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|++........ ..-...||..||..|... -......+.+++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 488888878888775544432 223468999999999876 333567888998753
No 22
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=48.24 E-value=27 Score=26.81 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=38.8
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|.+.....+.. +.....||-.||..|...- ......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 589999888887776655542 2234689999999988652 23457888998864
No 23
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=42.57 E-value=43 Score=25.59 Aligned_cols=55 Identities=24% Similarity=0.258 Sum_probs=38.2
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|+......... +.....||-.||..|...-.......+.|++|..
T Consensus 33 ~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 33 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 89 (142)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCC
Confidence 589998877887776555442 2234689999999988653321267889998863
No 24
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=39.33 E-value=46 Score=26.08 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=35.4
Q ss_pred CeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeC
Q psy6532 117 GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tD 169 (277)
.+|+++...+|+......+.....-..||-.||..|+..-. .....+.+.+|
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs~G~-~~~~ai~vv~~ 103 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAGA-TKLTHIVAIAN 103 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHHhCC-CceEEEEEEeC
Confidence 58999998889888766665444456899999999885321 12334556665
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=37.14 E-value=44 Score=25.92 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=37.5
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
.+|+++...+|++.....+.. +.....||-.||..|+..- ......+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 589999988998886665542 2235689999999988753 2244567777764
No 26
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=32.09 E-value=62 Score=24.67 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=38.6
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhh-hCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQ-LGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~-~~~~~v~I~tDS~ 171 (277)
.+|+++...+|+......+.. +..-..||-.||..|+..-.. .....+.|.+|..
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~~ 90 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETH 90 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCCC
Confidence 589999988998877665542 233468999999999864221 1345788888863
No 27
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=28.25 E-value=1.9e+02 Score=24.64 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCCceeeecCCCCC----CCeeEEEEEcCCCe-E----Eee---cCCCCcchhHHHHHHHHHHHHHHhhhCCC--ceEEE
Q psy6532 102 NSNMKPTIDGSKNE----QGVGCALTIPEKDI-V----KRF---GLNKNASIFHAELFALLQSLLTIKQLGTC--KALII 167 (277)
Q Consensus 102 ~~~~~iytDGS~~~----~~~G~g~v~~~~~~-~----~~~---~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~--~v~I~ 167 (277)
...+.+|.|=...+ .|+|.|+|....+. . +-+ .+...++..-||+++-..+-=++.--..+ +|.|.
T Consensus 60 ~~tLYVYIDPAfT~N~~ASGTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrvaVE 139 (279)
T 3n4p_A 60 GKTLYVYLDPAFTTNRKASGTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAVE 139 (279)
T ss_dssp CCEEEEEEECC--------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEB
T ss_pred CCeEEEEECCccccCCccccccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEEEe
Confidence 56789999999875 46888888644332 2 122 34445556667776654332222211223 33343
Q ss_pred eCC-HHHHHHHhccCCCChHHHHHHHHHhcCCC-CeEEEEecCCCC
Q psy6532 168 TDS-LSCLQAIMNMFHENPLVKRVQEELSSTES-PVEFLWCPSHVG 211 (277)
Q Consensus 168 tDS-~~ai~~l~~~~~~~~~~~~i~~~l~~~~~-~v~~~WvpgH~g 211 (277)
..| |.+.= .+...|.+.+..... .+.|.+.+-+.+
T Consensus 140 GNSsQdsAV---------aIA~~i~~~~~~~~~~~~~FyH~~d~~~ 176 (279)
T 3n4p_A 140 GNTNQAAAV---------RIACLIRQSVQSSTLIRVLFYHTPDQNH 176 (279)
T ss_dssp CSSCHHHHH---------HHHHHHHHHHHHHCCCEEEEECEEETTT
T ss_pred cCccHHHHH---------HHHHHHHHHhhhcccccEEEEecCCCcc
Confidence 332 21111 123445554433333 488988876654
No 28
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=27.86 E-value=74 Score=25.24 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=31.6
Q ss_pred CeeEEEEEcCCCeEE-eecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 117 GVGCALTIPEKDIVK-RFGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~-~~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
.+|+.+|. +|+... .+... ...-...||+.||..|.+..........++|+--
T Consensus 37 pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvTl 92 (179)
T 2nx8_A 37 PIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTI 92 (179)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEECC
Confidence 47887773 555442 22111 1112457999999998876544445677777743
No 29
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=26.72 E-value=80 Score=24.03 Aligned_cols=53 Identities=11% Similarity=0.040 Sum_probs=36.2
Q ss_pred CeeEEEEEcCCCeEEeecCCCC--cchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 117 GVGCALTIPEKDIVKRFGLNKN--ASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~~--~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
.+|++++..+|+......+... .....||-.||..|+..- ......+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G-~~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATG-GGRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 5899998888888766554422 234679999999998653 2234566777664
No 30
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=26.36 E-value=74 Score=24.21 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=35.3
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
.+|++++..+|+......... ......||..||..|...-. .....+.|.+|.
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G~-~~~~~~~v~~~~ 78 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQK-KVTHSICLAREN 78 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHTC-CEEEEEEEEESS
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCCC-CcEEEEEEEecC
Confidence 689998888887775544432 22356899999999887521 223566777764
No 31
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=25.62 E-value=1.1e+02 Score=23.59 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=32.3
Q ss_pred CeeEEEEEcCCCeEE-eecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 117 GVGCALTIPEKDIVK-RFGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~-~~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
.+|+.+|. +|+... .+... ...-...||..||..|.+..........++|+--
T Consensus 28 pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT~ 83 (159)
T 2b3j_A 28 PIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTL 83 (159)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEECC
Confidence 47888775 555442 22211 0122457999999998876544455677888743
No 32
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=25.22 E-value=1e+02 Score=23.23 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=30.8
Q ss_pred CeeEEEEEcCCCeEE-eecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeC
Q psy6532 117 GVGCALTIPEKDIVK-RFGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIITD 169 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~-~~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tD 169 (277)
.+|+.+|. +|+... ..... ...-...||..||..|.+..........++|+-
T Consensus 25 ~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T 79 (144)
T 2a8n_A 25 PIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT 79 (144)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEEC
Confidence 47888875 555442 22211 111245799999999887654434556677763
No 33
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=24.08 E-value=98 Score=24.15 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCeeEEEEEcCCCeEEe-ecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCC
Q psy6532 116 QGVGCALTIPEKDIVKR-FGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIITDS 170 (277)
Q Consensus 116 ~~~G~g~v~~~~~~~~~-~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS 170 (277)
..+|+.+| .+|+.... +... ...-...||+.||..|.+..........++|+--
T Consensus 32 ~pVGAVIV-~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT~ 88 (164)
T 1wkq_A 32 GPFGAVIV-KDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSC 88 (164)
T ss_dssp SSCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEE
T ss_pred CCEEEEEE-ECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEeC
Confidence 34888777 45554422 2111 1112457999999998876544445677777743
No 34
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=23.68 E-value=74 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=30.3
Q ss_pred CeeEEEEEcCCCeEE-eecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEe
Q psy6532 117 GVGCALTIPEKDIVK-RFGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIIT 168 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~-~~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~t 168 (277)
.+|+.+| .+|+... .+... .......||..||..|.+..........++|+
T Consensus 30 pVGAviV-~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLV-HNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEE-ECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 4788777 4555442 22211 11123679999999988765443445667776
No 35
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=23.10 E-value=1.2e+02 Score=23.73 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=32.8
Q ss_pred CeeEEEEEcCCCeEE-eecCC--CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVK-RFGLN--KNASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~-~~~~~--~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|+.+|. +|+... .+... .......||..||..|.+..........++|+-.+
T Consensus 44 pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~E 100 (171)
T 1wwr_A 44 PVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLE 100 (171)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSC
T ss_pred CEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCC
Confidence 47888875 555542 22211 11124579999999988765444456788887543
No 36
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=22.82 E-value=1.3e+02 Score=25.97 Aligned_cols=55 Identities=15% Similarity=-0.032 Sum_probs=38.7
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHh-hhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIK-QLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~-~~~~~~v~I~tDS~ 171 (277)
.+|++++..+|.......... +.....||-.||..+...-. ......+.+++|..
T Consensus 210 ~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~ 267 (294)
T 1ctt_A 210 PSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKAD 267 (294)
T ss_dssp CEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTT
T ss_pred ceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCC
Confidence 589999888887776655432 33456899999999886422 12466888988864
No 37
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=21.67 E-value=1.1e+02 Score=28.66 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=44.0
Q ss_pred CCCceeeecCCCCCCCeeEEEEEcC-CC-eE--EeecCCCCcchhHHHHHH-HHHHHHHHhhh--CC-CceEE-EeCCHH
Q psy6532 102 NSNMKPTIDGSKNEQGVGCALTIPE-KD-IV--KRFGLNKNASIFHAELFA-LLQSLLTIKQL--GT-CKALI-ITDSLS 172 (277)
Q Consensus 102 ~~~~~iytDGS~~~~~~G~g~v~~~-~~-~~--~~~~~~~~~t~~~aEl~A-i~~aL~~a~~~--~~-~~v~I-~tDS~~ 172 (277)
...+.+|||+|.. + .+|+++.+ +. .. ..+....+...++-|+.| +..+|+...-. +. ..+.| ++|++.
T Consensus 324 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 324 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 5668999998853 1 23555433 22 22 122333344566778888 88888775432 22 24555 799887
Q ss_pred HHHHHhcc
Q psy6532 173 CLQAIMNM 180 (277)
Q Consensus 173 ai~~l~~~ 180 (277)
.......+
T Consensus 401 ~~~~~~~~ 408 (557)
T 2zd1_A 401 ETWWTEYW 408 (557)
T ss_dssp HHHHHHCS
T ss_pred HHHhhhch
Confidence 66655543
Done!