Query psy6532
Match_columns 277
No_of_seqs 210 out of 1583
Neff 8.1
Searched_HMMs 13730
Date Fri Aug 16 20:29:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6532.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6532hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a1 c.55.3.1 (A:430-555) H 99.9 9.8E-26 7.1E-30 175.5 13.5 116 103-226 6-126 (126)
2 d1rila_ c.55.3.1 (A:) RNase H 99.9 2.4E-25 1.8E-29 177.6 7.5 123 103-229 2-144 (147)
3 d1jl1a_ c.55.3.1 (A:) RNase H 99.9 1.7E-24 1.3E-28 173.1 9.4 124 104-231 2-144 (152)
4 d1s1ta1 c.55.3.1 (A:430-539) H 99.8 2.8E-19 2E-23 135.2 11.9 101 102-209 6-110 (110)
5 d1zbfa1 c.55.3.1 (A:62-193) BH 99.7 1.4E-17 1E-21 128.5 5.4 111 106-219 6-131 (132)
6 d2d30a1 c.97.1.1 (A:1-124) mon 48.2 17 0.0013 25.4 5.6 54 117-171 25-80 (124)
7 d1r5ta_ c.97.1.1 (A:) mono-dom 35.8 25 0.0019 25.0 4.9 55 117-171 32-88 (141)
8 d2g84a1 c.97.1.2 (A:1-189) Put 35.4 44 0.0032 24.9 6.5 57 117-173 47-112 (189)
9 d2z3ga1 c.97.1.1 (A:2-124) Bla 33.8 34 0.0025 23.7 5.2 52 117-169 27-78 (123)
10 d1uwza_ c.97.1.1 (A:) mono-dom 26.8 53 0.0038 22.8 5.3 54 117-171 25-80 (130)
11 d2a8na1 c.97.1.2 (A:2-131) Cyt 21.4 43 0.0031 23.2 3.8 54 118-172 25-81 (130)
No 1
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.93 E-value=9.8e-26 Score=175.52 Aligned_cols=116 Identities=24% Similarity=0.282 Sum_probs=89.5
Q ss_pred CCceeeecCCCCC-C-CeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhcc
Q psy6532 103 SNMKPTIDGSKNE-Q-GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM 180 (277)
Q Consensus 103 ~~~~iytDGS~~~-~-~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~~ 180 (277)
...++|||||+.. + ..|+|++++.+..... .+ ...||+.||+.||..||+. ....+.|+|||+++++.+.++
T Consensus 6 ~~~t~YTDGS~~~n~~~~~~g~~~~~~~~~~~-~~-~~~tnn~AEl~Ai~~al~~----~~~~i~I~tDS~~v~~~~~~~ 79 (126)
T d1mu2a1 6 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVK-KL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 79 (126)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEE-EE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCcEEEEcCCCCCCCCcEEEEEEecCCCEEEE-ec-CCCcchHHHHHHHHHHhcc----CCcceEEEechHHHHHHHhcC
Confidence 4468999999764 3 3777887777655432 22 2579999999999999875 357899999999999999997
Q ss_pred CC--CChHHH-HHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhh
Q psy6532 181 FH--ENPLVK-RVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226 (277)
Q Consensus 181 ~~--~~~~~~-~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~ 226 (277)
+. .+.... .+..+.+ ...|.|.|||||+|++|||+||+||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~v~~~wV~gH~g~~gNe~AD~LA~~ai 126 (126)
T d1mu2a1 80 PTESESKIVNQIIEEMIK--KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126 (126)
T ss_dssp CSEESCHHHHHHHHHHHH--CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred CccccchHHHHHHHHhhh--cceeEEEEEeCCCCCcchHHHHHHHHhhC
Confidence 75 333333 3444333 45899999999999999999999999984
No 2
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=99.91 E-value=2.4e-25 Score=177.63 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=92.7
Q ss_pred CCceeeecCCCCCC--CeeEEEEEcC-CCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 103 SNMKPTIDGSKNEQ--GVGCALTIPE-KDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 103 ~~~~iytDGS~~~~--~~G~g~v~~~-~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
..++||||||+.++ ..|+|+|+.. +...........+||+.||+.|+..||+++.. ...+.|+|||+++++.+..
T Consensus 2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~i~i~tds~~~~~~~~~ 79 (147)
T d1rila_ 2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 79 (147)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred CEEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhccC--CceEEEecchhhhhccccc
Confidence 46899999998853 3788988754 33222222234579999999999999987653 5689999999999998865
Q ss_pred cCC----------C--C-----hHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy6532 180 MFH----------E--N-----PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINND 229 (277)
Q Consensus 180 ~~~----------~--~-----~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~ 229 (277)
... . . .+++++..++. ...|+|.|||||+|++|||+||+||++|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~--~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~~ 144 (147)
T d1rila_ 80 GWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA--PHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144 (147)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT--TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred cchhhhhhccccccccccchhHHHHHHHHHHhh--hcccceEEccCCCCCcchHHHHHHHHHHHHHh
Confidence 321 0 1 13455555433 56799999999999999999999999999875
No 3
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=1.7e-24 Score=173.07 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=92.9
Q ss_pred CceeeecCCCCCC--CeeEEEEEcCCCeEE-eecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhcc
Q psy6532 104 NMKPTIDGSKNEQ--GVGCALTIPEKDIVK-RFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM 180 (277)
Q Consensus 104 ~~~iytDGS~~~~--~~G~g~v~~~~~~~~-~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~~ 180 (277)
.|.||||||+.++ .+|+|+|+..++... .....+..|++.||+.|+..|++++.. ...+.++|||++++..+..+
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~~~--~~~i~i~tds~~~i~~~~~~ 79 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQW 79 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHTT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhhcc--cceEEEeecceeeEEcccch
Confidence 5789999998753 389998876544332 222224678999999999999988654 56789999999999988754
Q ss_pred CC---------C--C-----hHHHHHHHHHhcCCCCeEEEEecCCCCCccchHHHHHHHHhhcCCcc
Q psy6532 181 FH---------E--N-----PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVI 231 (277)
Q Consensus 181 ~~---------~--~-----~~~~~i~~~l~~~~~~v~~~WvpgH~g~~gNe~AD~lAk~a~~~~~~ 231 (277)
.. . . .+..++..++ ....|.|+|||||+|++|||+||+|||+|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~--~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~~~~ 144 (152)
T d1jl1a_ 80 IHNWKKRGWKTADKKPVKNVDLWQRLDAAL--GQHQIKWEWVKGHAGHPENERADELARAAAMNPTL 144 (152)
T ss_dssp HHHHHHTTTBCTTSCBCTTHHHHHHHHHHT--TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred hhHhHhccchhcccCeeecHHHHHHHHHHh--hcceeEEEEecccCCCccHHHHHHHHHHHHhCCCC
Confidence 31 1 1 1334444433 34689999999999999999999999999987743
No 4
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.79 E-value=2.8e-19 Score=135.18 Aligned_cols=101 Identities=23% Similarity=0.247 Sum_probs=77.2
Q ss_pred CCCceeeecCCCCC-CC-eeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhc
Q psy6532 102 NSNMKPTIDGSKNE-QG-VGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMN 179 (277)
Q Consensus 102 ~~~~~iytDGS~~~-~~-~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~ 179 (277)
....++|||||+.. ++ .|+|++..++..... .+ ..+||+.|||.|++.||+. ...++.|+|||+++++++++
T Consensus 6 ~~~~t~ytDGs~~~n~~~g~~g~~~~~~~~~~~-~~-~~~TNn~aEl~Avi~aL~~----~~~~v~I~TDS~yvi~~i~~ 79 (110)
T d1s1ta1 6 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVV-TL-TDTTNQKTELQAIYLALQD----SGLEVNIVTDSQYALGIIQA 79 (110)
T ss_dssp TTSEEEEEEEEEETTTTEEEEEEEETTSCEEEE-EE-SSCCHHHHHHHHHHHHHHH----SCSEEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCCCcEEEEEEecCCeEEE-ec-ccCcHHHHHHHHHHHHHHh----CCCeEEEEEehHHHHHHHhc
Confidence 34578999999764 33 677777776654322 22 2579999999999999974 45789999999999999999
Q ss_pred cCC--CChHHHHHHHHHhcCCCCeEEEEecCC
Q psy6532 180 MFH--ENPLVKRVQEELSSTESPVEFLWCPSH 209 (277)
Q Consensus 180 ~~~--~~~~~~~i~~~l~~~~~~v~~~WvpgH 209 (277)
+.. ...+.+++.+.+.+ ...|.|.|||||
T Consensus 80 ~~~~~~~~l~~~il~~l~~-~~~v~i~WVpgH 110 (110)
T d1s1ta1 80 QPDQSESELVNQIIEQLIK-KEKVYLAWVPAH 110 (110)
T ss_dssp CCSEESCHHHHHHHHHHHH-CSEEEEEECCSS
T ss_pred CccccchHHHHHHHHHHhc-CCceEEEEeCCC
Confidence 775 45567777666554 468999999999
No 5
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=99.67 E-value=1.4e-17 Score=128.53 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=82.9
Q ss_pred eeeecCCCCC--CCeeEEEEEcCCC-eEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHHHHHHHhccCC
Q psy6532 106 KPTIDGSKNE--QGVGCALTIPEKD-IVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH 182 (277)
Q Consensus 106 ~iytDGS~~~--~~~G~g~v~~~~~-~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ai~~l~~~~~ 182 (277)
.||||||+.+ |.+|+|+|+...+ .....+.-+.+||++||+.|++.||+.+.+.+ .++.|+|||+++++.+.++..
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~~~-~~i~I~tDS~yvi~wv~~~~~ 84 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERN-SRKPIYSNSQTAIKWVKDKKA 84 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTT-CCCCEEESCHHHHHHHHHTCC
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCcCccchHHHHHHHHHHHHHHhhcCC-ceEEEEeccHHHHHHHHhCce
Confidence 4899999884 4488888876543 33332222478999999999999999998755 679999999999999987652
Q ss_pred C--------C-hHHHHHHH---HHhcCCCCeEEEEecCCCCCccchHHH
Q psy6532 183 E--------N-PLVKRVQE---ELSSTESPVEFLWCPSHVGIAGNETAD 219 (277)
Q Consensus 183 ~--------~-~~~~~i~~---~l~~~~~~v~~~WvpgH~g~~gNe~AD 219 (277)
. + .+.+.+.+ .++ ...+.+.|++.|+...||..||
T Consensus 85 kt~~~~~vkN~~l~~~i~~a~~~lk--~h~~~~~~~KW~~~~wG~i~AD 131 (132)
T d1zbfa1 85 KSTLVRNEETALIWKLVDEAEEWLN--THTYETPILKWQTDKWGEIKAD 131 (132)
T ss_dssp CCCCCCSTTTHHHHHHHHHHHHHHH--HCCCCCCEEECCHHHHCSCTTC
T ss_pred ecCcCCCcccHHHHHHHHHHHHHHH--hCCcCceeEEecCcccccCCCC
Confidence 1 1 13333433 333 4568889999999999999988
No 6
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}
Probab=48.21 E-value=17 Score=25.36 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=39.4
Q ss_pred CeeEEEEEcCCCeEEeecCCCC--cchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNKN--ASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~~--~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|+++...+|+...+..+... ..-..||-.||..|+..- ......+.|.+|+.
T Consensus 25 ~VGAal~~~~G~i~~G~NvEn~s~~~~~CAEr~Ai~~a~~~g-~~~~~~i~v~~~~~ 80 (124)
T d2d30a1 25 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 80 (124)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeeccccCCcccCHHHHHHHHHHhcC-CceeEEEEEEcCCC
Confidence 4999999899998877665432 223489999999988753 33456788888875
No 7
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.77 E-value=25 Score=25.01 Aligned_cols=55 Identities=24% Similarity=0.258 Sum_probs=37.3
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|+++...+|++.....+.. ...-..||-.||..|+..-.+....-+.+..|+.
T Consensus 32 ~VGAAl~t~~G~I~~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~~~~vv~~~~~ 88 (141)
T d1r5ta_ 32 RVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSE 88 (141)
T ss_dssp CEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHhcCCccceEEEEeecCC
Confidence 489999888888776665532 2234579999999888665444445566666654
No 8
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}
Probab=35.44 E-value=44 Score=24.91 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=33.0
Q ss_pred CeeEEEEEcC-CCeEEeec-C--CCCcchhHHHHHHHHHHHHHHhhhC-----CCceEEEeCCHHH
Q psy6532 117 GVGCALTIPE-KDIVKRFG-L--NKNASIFHAELFALLQSLLTIKQLG-----TCKALIITDSLSC 173 (277)
Q Consensus 117 ~~G~g~v~~~-~~~~~~~~-~--~~~~t~~~aEl~Ai~~aL~~a~~~~-----~~~v~I~tDS~~a 173 (277)
..|+-+|..+ |+...... . ........||+.||..|.+...... ....++|+=.+..
T Consensus 47 P~GaviV~~~~g~Iia~g~N~~~~~~dpt~HAEi~AI~~A~~~~~~~~l~~~~l~~~tlY~TlEPC 112 (189)
T d2g84a1 47 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPC 112 (189)
T ss_dssp SCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCEEEEEEECCC
T ss_pred CEEEEEEECCCCEEEEEEcCCcCcCCCCcccHHHHHHHHHHHHhhccccccccccCcEEEeccCCC
Confidence 3677777665 44443221 1 1122234899999999887765422 2466777765543
No 9
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]}
Probab=33.83 E-value=34 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.014 Sum_probs=34.0
Q ss_pred CeeEEEEEcCCCeEEeecCCCCcchhHHHHHHHHHHHHHHhhhCCCceEEEeC
Q psy6532 117 GVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIITD 169 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tD 169 (277)
.+|++++..+|++..+..+...+--..||-.||..|+..-. .....+.+.+|
T Consensus 27 ~VGAa~l~~~G~i~~G~NvEN~s~glCAEr~Ai~~a~~~g~-~~i~~i~~v~~ 78 (123)
T d2z3ga1 27 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAA-GNLTCIVAIGN 78 (123)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTTC-CCEEEEEEEET
T ss_pred CEEEEEEeCCCCEEEEEcccCCCCccchhhhHhhhhhhcCC-CceEEEEEEEc
Confidence 58999998899888776655332234899999988865422 12334445554
No 10
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}
Probab=26.85 E-value=53 Score=22.77 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=37.9
Q ss_pred CeeEEEEEcCCCeEEeecCCC--CcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCH
Q psy6532 117 GVGCALTIPEKDIVKRFGLNK--NASIFHAELFALLQSLLTIKQLGTCKALIITDSL 171 (277)
Q Consensus 117 ~~G~g~v~~~~~~~~~~~~~~--~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~ 171 (277)
.+|+++...+|++..+..+.. ......||-.||..|+..-. .....+.|.+|+.
T Consensus 25 ~VGAa~~~~~G~i~~G~NvEnas~~~~~CAEr~Ai~~a~~~g~-~~~~~i~v~~~~~ 80 (130)
T d1uwza_ 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEGD-TEFQMLAVAADTP 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHTC-CCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEEeeeccccccccccceehhhHHHHHhhh-cceeeEEEEcCCC
Confidence 489999988898887765542 23345799999988776542 2456677777764
No 11
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.39 E-value=43 Score=23.16 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=31.8
Q ss_pred eeEEEEEcCCCeEEeecCC---CCcchhHHHHHHHHHHHHHHhhhCCCceEEEeCCHH
Q psy6532 118 VGCALTIPEKDIVKRFGLN---KNASIFHAELFALLQSLLTIKQLGTCKALIITDSLS 172 (277)
Q Consensus 118 ~G~g~v~~~~~~~~~~~~~---~~~t~~~aEl~Ai~~aL~~a~~~~~~~v~I~tDS~~ 172 (277)
+|+-+| .+++......-. .......||+.|+..|.+..........++|+--+.
T Consensus 25 VGavIV-~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~T~EP 81 (130)
T d2a8na1 25 IGAVLV-LDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEP 81 (130)
T ss_dssp CEEEEE-ETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEECC
T ss_pred EEEEEE-ECCeEEEeecccccccccccchhHHHHHHHHHHHhCCcCCCCCEEeccccc
Confidence 677665 445444322110 112234899999999988776555566677766543
Done!