RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6532
(277 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 57.0 bits (138), Expect = 2e-10
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 9/126 (7%)
Query: 110 DGS--KNEQGVGCALTIPEKDIVKRFGL-----NKNASIFHAELFALLQSLLTIKQLGTC 162
DGS + A K + + E+ A L ++ QLG
Sbjct: 12 DGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLG-V 70
Query: 163 KALIITDSLSCLQAIMNMFHEN-PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEE 221
K I+ D + + + ++ F +H G N+ D +
Sbjct: 71 KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMK 130
Query: 222 AKQAIN 227
AK A+
Sbjct: 131 AKSALG 136
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 56.8 bits (137), Expect = 3e-10
Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 17/138 (12%)
Query: 109 IDGSKN-EQGVGCA--LTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
DGS ++G A E +++ L S AEL AL Q+L K K
Sbjct: 28 TDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQAL---KMAEGKKLN 84
Query: 166 IITDSLSCLQAIMNMFHENP-----LVKRVQEELSSTESPVEFLWCPSHVG-----IAGN 215
+ TDS + + + L + + + CP H GN
Sbjct: 85 VYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKR-LSIIHCPGHQKGNSAEARGN 143
Query: 216 ETADEEAKQAINNDVIHN 233
AD+ A++A V+
Sbjct: 144 RMADQAAREAAMKAVLET 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 1e-07
Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 58/276 (21%)
Query: 27 NSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILSSNYIA-KTLSIENH 85
+L L P +N+ + G+ ++ + + L + + I L N
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW----VALDVC---LSYKVQCKMDFKIFWLNLKNCNS 194
Query: 86 PN-IMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPE-KDIVKRFGLNKNASIFH 143
P ++ L L + + N D S N + L I + ++R +K +
Sbjct: 195 PETVLEMLQKLLYQI--DPNWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKP----Y 243
Query: 144 AELFALL-----QSLLTIKQLG-TCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSST 197
LL Q+ +CK L+ T + + + L+
Sbjct: 244 EN--CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 198 ESP---VEFLWC-------------PSHVGIAGNETADEEAKQAINNDVIHNELFFDEVK 241
E +++L C P + I D A +N + D++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDN---WKHVNCDKLT 356
Query: 242 IIIKKKYTEEWNTKWVNISPNENKLRKIKNSILPSS 277
II+ + P E + + S+ P S
Sbjct: 357 TIIESSLN--------VLEPAEYRKMFDRLSVFPPS 384
Score = 36.0 bits (82), Expect = 0.012
Identities = 48/285 (16%), Positives = 88/285 (30%), Gaps = 70/285 (24%)
Query: 2 LIRIYKSLIRSKLDYGCPVYNSASSNSLQILNP--VQNLCLRLATGAFRSS---PVVSL- 55
IR + + C + +SL +L P + + RL+ F S P + L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS 393
Query: 56 ----EAETGEP----NLDIRRKILSSNYIAKTLSI-------ENHPNIMRTLNPLYVRKY 100
+ + N + ++ T+SI + L+ V Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 101 ENSNMKPTIDGSKNEQGVGCALTIPEKD--IVKRFG--LNKNASIFHAELFALLQSLLT- 155
N+ T D L P D G L KN H E L + +
Sbjct: 454 ---NIPKTFDSDD--------LIPPYLDQYFYSHIGHHL-KNIE--HPERMTLFRMVFLD 499
Query: 156 -------IKQLGT--CKALIITDSLSCLQAIMNMFHEN-PLVKRVQEELSSTESPVEFLW 205
I+ T + I ++L L+ +N P +R+ + ++FL
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------LDFLP 553
Query: 206 CPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKIIIKKKYTE 250
I T D++ L ++ + I ++ + +
Sbjct: 554 KIEENLICSKYT-----------DLLRIALMAED-EAIFEEAHKQ 586
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 44.9 bits (107), Expect = 4e-06
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH----------------ENPLV 187
EL A+ +L + I+TDS L I H LV
Sbjct: 52 TELQAIYLALQDSG----LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLV 107
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
++ E+L E V W P+H GI GNE D+ I
Sbjct: 108 NQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVDKLVSAGI 145
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 44.3 bits (105), Expect = 2e-05
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH------ENPLVKRVQEELSST 197
AEL A +L K II DS Q +M + E+ +V ++ EE+
Sbjct: 476 AELEAFAMAL----TDSGPKVNIIVDS----QYVMGIVASQPTESESKIVNQIIEEMIKK 527
Query: 198 ESPVEFLWCPSHVGIAGNETADEEAKQAI 226
E+ + W P+H GI GN+ D Q I
Sbjct: 528 EA-IYVAWVPAHKGIGGNQEVDHLVSQGI 555
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 42.8 bits (101), Expect = 7e-05
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNM--FHENPLVKRVQEELSSTESPV 201
EL A+ +L Q + I+TDS L I E+ LV ++ E+L E V
Sbjct: 479 TELQAIYLAL----QDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK-V 533
Query: 202 EFLWCPSHVGIAGNETADE 220
W P+H GI GNE D+
Sbjct: 534 YLAWVPAHKGIGGNEQVDK 552
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 55/307 (17%), Positives = 101/307 (32%), Gaps = 102/307 (33%)
Query: 15 DY--GCPVYNSASSNSLQILNPVQ-----NLC--LRLATGAFRSSPVVSLEAETGEPNLD 65
DY P+ S ++ +Q L G RS L+ TG
Sbjct: 229 DYLLSIPI-------SCPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKGATG----- 272
Query: 66 IRRKILSSNYIAKTLSIEN-HPNIMRTLNPLY---VRKYE---NSNMKPTI--DGSKNEQ 116
+ ++++ IA+T S E+ ++ + + L+ VR YE N+++ P+I D +N +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 117 GV--------GCALTIPEKDIVK---RFGLNKNASIFHAELFALLQSLLTIKQLGTCKAL 165
GV + + K K I +L+ K L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI------SLVNGA---------KNL 377
Query: 166 IITDSLSCLQAIMNMFHENPLVKRVQEELSSTESP---------VEFL--WCPSHVGIAG 214
+++ L + + + L + P FL P H
Sbjct: 378 VVSGPPQSLYGLNLTLRK----AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH----- 428
Query: 215 NETAD--EEAKQAINNDVIHNELFFD--EVKIIIKKKY-TEEWNTKWVNISPNENKLRKI 269
+ A IN D++ N + F+ +++I + Y T + + LR +
Sbjct: 429 ---SHLLVPASDLINKDLVKNNVSFNAKDIQIPV---YDTFDGSD-----------LRVL 471
Query: 270 KNSILPS 276
SI
Sbjct: 472 SGSISER 478
Score = 38.5 bits (89), Expect = 0.002
Identities = 50/299 (16%), Positives = 86/299 (28%), Gaps = 117/299 (39%)
Query: 47 FRSSPVVSL---EAETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNP--LYV---- 97
+++S A+ Y SI +I+ NP L +
Sbjct: 1636 YKTSKAAQDVWNRAD----------NHFKDTY---GFSI---LDIVIN-NPVNLTIHFGG 1678
Query: 98 ----RKYEN-SNM--KPTIDGSKNEQGVGCALTIPEKDIVKRFG-----LNK--NAS--I 141
R EN S M + +DG + + + F L+ +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPAL 1736
Query: 142 FHAE--LFALLQSLLTIKQLGTCKALIITD------SL---SCLQAIMNMFH-EN--PLV 187
E F L+S K LI D SL + L ++ ++ E+ +V
Sbjct: 1737 TLMEKAAFEDLKS----------KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 188 -KR---VQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKII 243
R +Q + E S+ G+ AIN + + ++ +
Sbjct: 1787 FYRGMTMQVAVPRDEL------GRSNYGMI-----------AINPGRVAASFSQEALQYV 1829
Query: 244 IKKKYTEEWNTKW----VN---------IS------------PNENKLRKIKNSILPSS 277
+++ T W VN + N KL+KI L S
Sbjct: 1830 VERVGKR---TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Score = 27.7 bits (61), Expect = 4.9
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 4 RIYKSLIRSKLDY-----GCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPV 52
I K L+++ + + PVY++ + L++L+ ++ R+ R PV
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG--SISERIVDCIIR-LPV 488
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 38.3 bits (90), Expect = 7e-04
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
Query: 144 AELFALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFH---------------ENP-LV 187
AE+ A +++ K K ++ T+S+ + I N N
Sbjct: 53 AEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 112
Query: 188 KRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAINN 228
++ + ++++ P H G GNE AD A++
Sbjct: 113 VALERLTQGMD--IQWMHVPGHSGFIGNEEADRLAREGAKQ 151
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 37.1 bits (87), Expect = 0.002
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEV 240
+++ W H G NE ADE A+ A N + + + EV
Sbjct: 116 IKWEWVKGHAGHPENERADELARAAAMNPTLEDTGYQVEV 155
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 35.3 bits (82), Expect = 0.006
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 117 GVGCALTIPEKDIVKRFG--LNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCL 174
G G + + V A+ AE L+ L +LG +A ++ DS +
Sbjct: 20 GYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVV 79
Query: 175 QAIMNMF---HEN--PLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAIN 227
+ + + H + L + Q S + + W P N AD A A++
Sbjct: 80 EQMSGRWKVKHPDLLKLYVQAQALASQFRR-INYEWVPRA----RNTYADRLANDAMD 132
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 34.3 bits (79), Expect = 0.014
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 23/133 (17%)
Query: 110 DGSKNEQ------GVGCALTIPEKDIVKRFGLNKNASIFH-----AELFALLQSLLTIKQ 158
DG + G + + + I +GL + + AE L+ + T+ +
Sbjct: 7 DGLCEPKNPGGIATFGFVIYLDNRKIE-GYGLAEKPFSINSTNNVAEYSGLICLMETMLR 65
Query: 159 LGTCKALIITDSLSCLQAIMNMF---HEN--PLVKRVQEELSSTESPVEFLWCPSHVGIA 213
LG +I DS ++ + + + PL ++ E + V
Sbjct: 66 LGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKK------KLNATLIWVPRE 119
Query: 214 GNETADEEAKQAI 226
N+ AD ++ A
Sbjct: 120 ENKEADRLSRVAY 132
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 34.4 bits (80), Expect = 0.014
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINND 229
V F H N ADE A+ AI +
Sbjct: 117 VTFHKVKGHSDNPYNSRADELARLAIKEN 145
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 33.7 bits (78), Expect = 0.030
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINN 228
V F + H G NE D EA++ +
Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQAQS 148
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 33.3 bits (77), Expect = 0.039
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINND 229
+++ W H G A NE D+ A+ A +
Sbjct: 118 IDWRWVKGHAGHAENERCDQLARAAAEAN 146
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 31.0 bits (69), Expect = 0.42
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 71 LSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSN-MKPTIDGSKNEQG 117
+S++Y KT +IE P ++ + + +++N MK +D + +
Sbjct: 207 ISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQ 254
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 29.4 bits (67), Expect = 0.59
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 14/121 (11%)
Query: 117 GVGCALTIPEKDIVKRF-GLNKNASIFHAELFALLQSLLTIKQLGTCKALIITDSLSCLQ 175
G+G +T + + + + AE AL+++L ++ G + D ++
Sbjct: 20 GIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGD----KLVDMEVEVR 75
Query: 176 AIMNMFHE---------NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
+ P +K +++ + H+ N ADE +AI
Sbjct: 76 MDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAI 135
Query: 227 N 227
+
Sbjct: 136 D 136
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 27.9 bits (63), Expect = 3.5
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 148 ALLQSLLTIKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEEL 194
+L +++ + G ALI++D+ +++ +VK+V + L
Sbjct: 18 SLEKAIKDLNGSGFKNALIVSDA---------FMNKSGVVKQVADLL 55
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 27.6 bits (62), Expect = 3.9
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 222 AKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKIKNSIL 274
AK N V +++FFD ++ I +K + + K + + IL
Sbjct: 158 AKTRAN--V--DKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.1
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 26/55 (47%)
Query: 7 KSLIRSKLDYGCPVYNSASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGE 61
K ++ KL SL++ S+P ++++A T E
Sbjct: 19 KQALK-KLQ-----------ASLKLYAD-------------DSAPALAIKA-TME 47
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL
III transcriptional repressor, RNA-POL III; 1.55A {Homo
sapiens}
Length = 164
Score = 26.2 bits (57), Expect = 9.6
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 54 SLEAETGEPNLDIRRKILSSNYIAKTLSIENHPNIMRTLNPLYVRKYENSNMKPT 108
L ETG+ ++ R + S ++ S + ++ TLN + Y+ S +
Sbjct: 21 QLTVETGDAHIIGRIESYSCKPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSH 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,999,475
Number of extensions: 229107
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 28
Length of query: 277
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 185
Effective length of database: 4,133,061
Effective search space: 764616285
Effective search space used: 764616285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)