RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6532
(277 letters)
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 51.8 bits (123), Expect = 4e-09
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 109 IDGSKNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
DGS N Q + + + AEL A +L K II
Sbjct: 12 TDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDSG----PKVNIIV 67
Query: 169 DSLSCLQAIMNMFHE--NPLVKRVQEELSSTESPVEFLWCPSHVGIAGNETADEEAKQAI 226
DS + + + E + +V ++ EE+ E + W P+H GI GN+ D Q I
Sbjct: 68 DSQYVMGIVASQPTESESKIVNQIIEEMIKKE-AIYVAWVPAHKGIGGNQEVDHLVSQGI 126
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 41.5 bits (96), Expect = 2e-05
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 110 DGS-KNEQGVG--CALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALI 166
DG+ G G AL G + EL A ++ L +K+ C+ +
Sbjct: 9 DGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDL 66
Query: 167 ITDSLSCLQAIMNMFHENPLVKR---------------VQEELSSTESPVEFLWCPSHVG 211
TDS +A + E + L+ V F + H G
Sbjct: 67 YTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTG 126
Query: 212 IAGNETADEEAKQAINN 228
NE D EA++ +
Sbjct: 127 HPENERVDREARRQAQS 143
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 40.4 bits (94), Expect = 3e-05
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 110 DGS-KNEQGVGCALTIPEKDIVKRFGLNKNASIFHAELFALLQSLLTIKQLGTCKALIIT 168
DG+ E +G A + + K L + + EL A+ +L Q + I+T
Sbjct: 14 DGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLAL----QDSGLEVNIVT 68
Query: 169 DSLSCLQAIMNMFHEN--PLVKRVQEELSSTESPVEFLWCPSH 209
DS L I ++ LV ++ E+L E V W P+H
Sbjct: 69 DSQYALGIIQAQPDQSESELVNQIIEQLIKKEK-VYLAWVPAH 110
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 40.0 bits (92), Expect = 8e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 200 PVEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELF 236
+++ W H G NE ADE A+ A N + + +
Sbjct: 113 QIKWEWVKGHAGHPENERADELARAAAMNPTLEDTGY 149
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 28.1 bits (61), Expect = 1.2
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 156 IKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEELSSTESPVEFLWCPSHVGIAGN 215
+K+ G KALI+TD + +V +V +++ + + G+ N
Sbjct: 25 VKRRGYQKALIVTDK---------TLVQCGVVAKVTDKMDAAGLAWAI-----YDGVVPN 70
Query: 216 ETADEEAKQAINNDVIHN 233
T K+ +
Sbjct: 71 PT-ITVVKEGLGVFQNSG 87
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 26.9 bits (59), Expect = 2.4
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 201 VEFLWCPSHVGIAGNETADEEAKQAINNDVIHNELFFDEVKI 242
+ ++ E + + FD V I
Sbjct: 226 LFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFI 267
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 26.9 bits (58), Expect = 3.0
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 156 IKQLGTCKALIITDSLSCLQAIMNMFHENPLVKRVQEEL 194
IK G K L + +N + +V + L
Sbjct: 29 IKNAGIRKVLFLYGG--------GSIKKNGVYDQVVDSL 59
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 26.2 bits (57), Expect = 3.9
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 201 VEFLWCPSHVGIAGNETADEEAK--QAINNDVIHNELFFDEVKI 242
V+ H + D K N + + L FD V+I
Sbjct: 205 VQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRI 248
>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 25.3 bits (55), Expect = 8.3
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 23 SASSNSLQILNPVQNLCLRLATGAFRSSPVVSLEAETGEPNLDIRRKILS 72
S + + I + NL ++ F L +G P + +R K++S
Sbjct: 25 SLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVS 74
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 25.2 bits (54), Expect = 9.4
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 76 IAKTLSIENHPNIMRTLNPLYVRKYENSNMKPTIDGSKNEQGVGCALTIPEKDIVKRFGL 135
+ + L HPN++R + V + + + E T +K
Sbjct: 60 VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLV----FEHVDQDLTTYLDKVPEPGVPT 115
Query: 136 NKNASIFHAELFAL 149
+ L L
Sbjct: 116 ETIKDMMFQLLRGL 129
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 507
Score = 25.3 bits (54), Expect = 9.5
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 221 EAKQAINNDVIHNELFFDEVKIIIKKKYTEEWNTKWVNISPNENKLRKI 269
+ + +DV + D + KW + + E K +I
Sbjct: 373 GVEDYLKDDVNKPTAYTDPAGTNTYQNALSNITIKWNDSADKEEKQERI 421
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 987,937
Number of extensions: 44054
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 15
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)