BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6533
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
+ KP IIFYRDGVSEGQFQ V+ E+ AI+ AC +E +Y P +TF+VVQKRHHTR F
Sbjct: 657 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 716
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
T +E G ++ N+ GT VDT ITHPT+ DFYL SH IQGT+RP+ Y+ LWD+ +
Sbjct: 717 CTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFS 775
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLD 362
DE + +TY LCH + RCTRSVS PAP YYAHL AFR R ++ ++ D
Sbjct: 776 SDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHD 823
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 72/122 (59%), Gaps = 21/122 (17%)
Query: 34 NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEA 93
+ KP IIFYRDGVSEGQFQ V+ E+ AI+ AC +E
Sbjct: 657 TRFKPTRIIFYRDGVSEGQFQQVLHH--------------------ELLAIREACIKLEK 696
Query: 94 NYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153
+Y P +TF+VVQKRHHTR F T +E G ++ N+ GT VDT ITHPT+ DFYL SH
Sbjct: 697 DYQPGITFIVVQKRHHTRLFCTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAG 755
Query: 154 IQ 155
IQ
Sbjct: 756 IQ 757
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 156 VGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+G+ TQC++ K V + P T N+ LKIN KL G+N
Sbjct: 540 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 575
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254
+ KP IIFYRDGVSEGQFQ V+ E+ AI+ AC +E +Y P +TF+VVQKRHHTR F
Sbjct: 659 TRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLF 718
Query: 255 PTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLT 314
T +E G ++ N+ GT VDT ITHPT+ DFYL SH IQGT+RP+ Y+ LWD+ +
Sbjct: 719 CTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFS 777
Query: 315 DDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLD 362
DE + +TY LCH + RCTRSVS PAP YYAHL AFR R ++ ++ D
Sbjct: 778 SDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHD 825
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 72/122 (59%), Gaps = 21/122 (17%)
Query: 34 NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEA 93
+ KP IIFYRDGVSEGQFQ V+ E+ AI+ AC +E
Sbjct: 659 TRFKPTRIIFYRDGVSEGQFQQVLHH--------------------ELLAIREACIKLEK 698
Query: 94 NYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153
+Y P +TF+VVQKRHHTR F T +E G ++ N+ GT VDT ITHPT+ DFYL SH
Sbjct: 699 DYQPGITFIVVQKRHHTRLFCTDKNERVG-KSGNIPAGTTVDTKITHPTEFDFYLCSHAG 757
Query: 154 IQ 155
IQ
Sbjct: 758 IQ 759
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 156 VGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+G+ TQC++ K V + P T N+ LKIN KL G+N
Sbjct: 542 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 577
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 437
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 10/180 (5%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGV-EANYNPKVTFLVVQKRHHTRF 253
N+ P +I+ +RDGVSEGQFQ V+ E+ ++ AC+ V A P++T +V KRH TRF
Sbjct: 232 NRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRF 291
Query: 254 FPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEY-- 311
FPT P ++ + + GT+VD +T+ DF+L +H S+QGTAR Y L DE
Sbjct: 292 FPTDPKHIH-FKSKSPKEGTVVDRGVTNVRYWDFFLQAHASLQGTARSAHYTVLVDEIFR 350
Query: 312 ----NLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN--RHLDMNN 365
N D E++T+ +C+LF R T++VS P YYA L R R++ K LD N+
Sbjct: 351 ADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDEND 410
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 22/123 (17%)
Query: 34 NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGV-E 92
N+ P +I+ +RDGVSEGQFQ V++ E+ ++ AC+ V
Sbjct: 232 NRSLPENILIFRDGVSEGQFQMVIKD--------------------ELPLVRAACKLVYP 271
Query: 93 ANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ 152
A P++T +V KRH TRFFPT P ++ + + GT+VD +T+ DF+L +H
Sbjct: 272 AGKLPRITLIVSVKRHQTRFFPTDPKHIH-FKSKSPKEGTVVDRGVTNVRYWDFFLQAHA 330
Query: 153 SIQ 155
S+Q
Sbjct: 331 SLQ 333
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
pdb|4F1N|B Chain B, Crystal Structure Of Kluyveromyces Polysporus Argonaute With
A Guide Rna
Length = 1046
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 199 PVHIIFYRDGVSEGQFQAVMSAEISAIKRACQ--GVEAN----YNPKVTFLVVQKRHHTR 252
P I+++RDGVS QF V+ E+ +IK + + G + N Y+P VT + KR+ R
Sbjct: 833 PTKIMYFRDGVSVDQFSQVVKIEVKSIKESVRKFGPQLNGGNKYDPPVTCIATVKRNQVR 892
Query: 253 FFPTSPSEGDGSRNN-------NVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYY 305
F P + + NV PGT+VD IT DF++ SHQ+++GT P Y+
Sbjct: 893 FIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHFDFFIQSHQALKGTGVPCHYW 952
Query: 306 RLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK-NRHLDMN 364
L+DE T D +E+ LC++F R T SV PAP YYA L R + K L+M
Sbjct: 953 CLYDENQSTSDYLQEICNNLCYIFGRSTTSVKVPAPVYYADLLCTRATCFFKAGFELNMA 1012
Query: 365 NLPRE 369
P+E
Sbjct: 1013 QAPKE 1017
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 33/131 (25%)
Query: 38 PVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQ--GVEAN- 94
P I+++RDGVS QF V++ E+ +IK + + G + N
Sbjct: 833 PTKIMYFRDGVSVDQFSQVVK--------------------IEVKSIKESVRKFGPQLNG 872
Query: 95 ---YNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNN-------NVRPGTIVDTTITHPTDL 144
Y+P VT + KR+ RF P + + NV PGT+VD IT
Sbjct: 873 GNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAHF 932
Query: 145 DFYLVSHQSIQ 155
DF++ SHQ+++
Sbjct: 933 DFFIQSHQALK 943
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi
Domains
Length = 388
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 47/174 (27%)
Query: 195 NKVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGV-EANYNPKVTFLVVQKRHHTRF 253
N+ P +I+ +RDGVSEGQFQ V+ E+ ++ AC+ V A P++T +V K
Sbjct: 232 NRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVK------ 285
Query: 254 FPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNL 313
G GS + V +VD + +R D N
Sbjct: 286 -------GSGSAHYTV----LVD--------------------------EIFRA-DYGNK 307
Query: 314 TDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN--RHLDMNN 365
D E++T+ +C+LF R T++VS P YYA L R R++ K LD N+
Sbjct: 308 AADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKELFDALDEND 361
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 21/74 (28%)
Query: 34 NKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGV-E 92
N+ P +I+ +RDGVSEGQFQ V++ E+ ++ AC+ V
Sbjct: 232 NRSLPENILIFRDGVSEGQFQMVIKD--------------------ELPLVRAACKLVYP 271
Query: 93 ANYNPKVTFLVVQK 106
A P++T +V K
Sbjct: 272 AGKLPRITLIVSVK 285
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUC|C Chain C, Crystal Structure Of Mid Domain From Hago2
pdb|3LUD|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUD|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Amp
pdb|3LUG|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUG|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Cmp
pdb|3LUH|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUH|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Gmp
pdb|3LUJ|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3LUJ|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Ump
pdb|3QX8|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX8|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
M7gpppg
pdb|3QX9|A Chain A, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|B Chain B, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
pdb|3QX9|C Chain C, Crystal Structure Of Mid Domain From Hago2 In Complex With
Atp
Length = 138
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 156 VGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+G+ TQC++ K V + P T N+ LKIN KL G+N
Sbjct: 103 LGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|B Chain B, Crystal Structure Of Mid Domain From Hago2
pdb|3LUK|C Chain C, Crystal Structure Of Mid Domain From Hago2
Length = 138
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 156 VGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
+G TQC++ K V + P T N+ LKIN KL G+N
Sbjct: 103 LGXATQCVQXKNVQRTTPQTLSNLCLKINVKLGGVN 138
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Domains
Length = 155
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
++GI++QC K VFKM+ N+ LKIN K+ G N
Sbjct: 109 ELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 145
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Ump
pdb|4G0Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Cmp
pdb|4G0Y|A Chain A, Crystal Structure Of Arabidopsis Ago1 In Complex With Amp
pdb|4G0Z|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
In Complex With Gmp
Length = 147
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
++GI++QC K VFKM+ N+ LKIN K+ G N
Sbjct: 108 ELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 144
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna
Binding By Arabidopsis Ago Mid Domains
Length = 154
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
++GI++QC K VFKM+ N+ LKIN K+ G N
Sbjct: 108 ELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRN 144
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain
Length = 147
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
++GI++QC K VFK + N+ LKIN K+ G N
Sbjct: 108 ELGIVSQCCLTKHVFKXSKQYXANVALKINVKVGGRN 144
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR-----PGT 273
S E+S +++ +++N N KV F+V + P S G G +N R P
Sbjct: 21 STEMS-VRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEA 79
Query: 274 IVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
+ D L FY ++ + G RP+K++ L + D
Sbjct: 80 VFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKD 121
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR-----PGT 273
S E+S +++ +++N N KV F+V + P S G G +N R P
Sbjct: 21 STEMS-VRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEA 79
Query: 274 IVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
+ D L FY ++ + G RP+K++ L + D
Sbjct: 80 VFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKD 121
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR-----PGT 273
S E+S +++ +++N N KV F+V + P S G G +N R P
Sbjct: 13 STEMS-VRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEA 71
Query: 274 IVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
+ D L FY ++ + G RP+K++ L + D
Sbjct: 72 VFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKD 113
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR-----PGT 273
S E+S +++ +++N N KV F+V + P S G G +N R P
Sbjct: 3 STEMS-VRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEA 61
Query: 274 IVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
+ D L FY ++ + G RP+K++ L + D
Sbjct: 62 VFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKD 103
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Query: 219 SAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR-----PGT 273
S E+S +++ +++N N KV F+V + P S G G +N R P
Sbjct: 10 STEMS-VRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEA 68
Query: 274 IVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTD 315
+ D L FY ++ + G RP+K++ L + D
Sbjct: 69 VFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKD 110
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
pdb|4G0O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain
Length = 139
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 155 QVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGIN 191
++GI++QC + + V K+N N+ LKIN K G N
Sbjct: 100 ELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRN 136
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 216 AVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVR----- 270
+ S E+S K A +++N N KV F+V + P S G G +N R
Sbjct: 8 STASTEMSVRKIAAH-MKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPY 66
Query: 271 PGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRL 307
P + D L FY ++ + G RP+K++ L
Sbjct: 67 PEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYL 103
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
pdb|4G0M|B Chain B, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain
Length = 150
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 124 RNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTG------ 177
++ RP T+V ++ D L ++G++TQC F PAT G
Sbjct: 81 KHGGARP-TLVLCAMSRKDDGYKTLKWIAETKLGLVTQC------FLTGPATKGGDQYRA 133
Query: 178 NILLKINAKLNGIN 191
N+ LK+NAK+ G N
Sbjct: 134 NLALKMNAKVGGSN 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,005,307
Number of Sequences: 62578
Number of extensions: 449415
Number of successful extensions: 857
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 35
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)