Query psy6533
Match_columns 387
No_of_seqs 294 out of 1501
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:30:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04657 Piwi_ago-like Piwi_ago 100.0 2.2E-66 4.8E-71 530.3 20.1 307 36-356 21-426 (426)
2 PLN03202 protein argonaute; Pr 100.0 2.2E-64 4.7E-69 553.5 17.4 309 36-359 448-863 (900)
3 KOG1041|consensus 100.0 8.3E-61 1.8E-65 522.2 18.0 308 35-356 427-835 (876)
4 cd02826 Piwi-like Piwi-like: P 100.0 9.5E-60 2.1E-64 476.9 17.9 272 66-354 36-393 (393)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 4.2E-59 9E-64 479.5 20.6 303 36-353 56-447 (448)
6 PF02171 Piwi: Piwi domain; I 100.0 1.5E-57 3.2E-62 444.3 12.8 216 138-357 4-302 (302)
7 KOG1042|consensus 100.0 4.4E-56 9.5E-61 453.0 13.2 267 79-360 489-834 (845)
8 cd04659 Piwi_piwi-like_ProArk 100.0 4E-36 8.7E-41 305.3 12.6 187 144-352 129-400 (404)
9 cd04657 Piwi_ago-like Piwi_ago 100.0 5.6E-30 1.2E-34 262.1 15.2 157 9-188 241-400 (426)
10 PLN03202 protein argonaute; Pr 100.0 4.1E-28 8.8E-33 267.3 13.2 149 10-187 672-833 (900)
11 KOG1041|consensus 99.9 1.4E-27 3E-32 261.6 14.0 125 9-153 649-773 (876)
12 cd04658 Piwi_piwi-like_Euk Piw 99.9 1.7E-26 3.7E-31 237.8 14.2 148 11-185 270-421 (448)
13 cd02826 Piwi-like Piwi-like: P 99.9 3E-26 6.5E-31 232.4 14.5 145 13-184 217-365 (393)
14 PF02171 Piwi: Piwi domain; I 99.9 7.3E-26 1.6E-30 221.0 11.8 149 10-184 119-271 (302)
15 KOG1042|consensus 99.9 8.3E-24 1.8E-28 217.3 9.2 148 10-184 646-800 (845)
16 cd04659 Piwi_piwi-like_ProArk 99.5 5.4E-13 1.2E-17 136.0 12.8 98 16-153 237-335 (404)
17 COG1431 Argonaute homolog, imp 98.3 1.4E-06 3.1E-11 90.4 8.9 182 142-354 416-668 (685)
18 PF13032 DUF3893: Domain of un 94.9 0.062 1.4E-06 47.2 6.0 57 298-358 66-122 (138)
19 PRK11617 endonuclease V; Provi 61.6 52 0.0011 31.4 8.7 124 217-356 79-217 (224)
20 PF02772 S-AdoMet_synt_M: S-ad 54.3 12 0.00025 32.3 2.7 34 327-360 12-45 (120)
21 PRK00766 hypothetical protein; 39.8 57 0.0012 30.4 5.1 34 311-351 152-185 (194)
22 TIGR02620 cas_VVA1548 putative 39.7 16 0.00036 29.9 1.3 37 340-380 42-78 (93)
23 COG0192 MetK S-adenosylmethion 39.6 23 0.00051 35.8 2.6 38 325-362 125-162 (388)
24 PF09652 Cas_VVA1548: Putative 33.3 24 0.00052 28.9 1.3 37 340-380 42-78 (93)
25 cd06559 Endonuclease_V Endonuc 28.5 2.6E+02 0.0056 26.2 7.6 119 217-350 75-207 (208)
26 PF01949 DUF99: Protein of unk 25.9 44 0.00095 30.9 1.9 40 304-350 140-179 (187)
27 PF08459 UvrC_HhH_N: UvrC Heli 23.2 1.8E+02 0.0038 26.1 5.2 36 19-57 61-96 (155)
28 PTZ00104 S-adenosylmethionine 20.5 83 0.0018 32.4 2.8 32 327-358 132-163 (398)
29 TIGR03527 selenium_YedF seleni 20.3 1.5E+02 0.0033 27.4 4.3 31 18-48 101-131 (194)
No 1
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.2e-66 Score=530.29 Aligned_cols=307 Identities=43% Similarity=0.697 Sum_probs=242.4
Q ss_pred CCCeeEEEeeccC-----ChhHHHHHHHh-cCCCCCcccccccccc---------cchHHHHHHHHHHHhhhccCCCcEE
Q psy6533 36 VKPVHIIFYRDGV-----SEGQFQAVMRR-CGPCSNRSVAGLSYTI---------FTGAEISAIKRACQGVEANYNPKVT 100 (387)
Q Consensus 36 ~~P~~Ii~yRDGV-----segq~~~v~~~-~~~~~~~~~~~~~y~~---------~~~~E~~~ik~a~~~~~~~~~Pk~t 100 (387)
.||..-|.|+++- ..|.+...-.. ..+...+.|+.+.... .....++.+.++|..+|..+.
T Consensus 21 vL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F~~~l~~~~~~~g~~~~---- 96 (426)
T cd04657 21 VLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNFVDQLVKTVIGAGINIT---- 96 (426)
T ss_pred EcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHHHHHHHHHHHhcCCccc----
Confidence 5677778888542 24544321100 1123346777775542 123466778888888877654
Q ss_pred EEEecccccc-cccCCCCCCCCCCCCCCCCCccccccccccCCC-cceeeeeec--eeeecceeeecccccccc-CCchh
Q psy6533 101 FLVVQKRHHT-RFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTD-LDFYLVSHQ--SIQVGILTQCIKEKTVFK-MNPAT 175 (387)
Q Consensus 101 ~Ivv~Krhht-Rff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~-~dfY~~~k~--~~~~GI~TQcv~~~tv~k-~n~~~ 175 (387)
..+....... .++..- .+....+..+ .+++.|.. .+.|..+|+ +.+.||+|||+..+++.+ .++++
T Consensus 97 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l-v~~ilp~~~~~~Y~~iK~~~~~~~gI~TQci~~~~~~k~~~~~~ 167 (426)
T cd04657 97 TAIASVEGRVEELFAKL--------KQAKGEGPQL-VLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQY 167 (426)
T ss_pred ccccccchhHHHHHHHH--------HhhccCCCCE-EEEEEcCCCcchHHHHHHHHhhcCCcccEEEcccccccccchHH
Confidence 1111111111 222210 0111112222 24777855 489999999 788999999999999876 68999
Q ss_pred HHHHHHHHHhhcCCcccccc------------------------------------------------------------
Q psy6533 176 TGNILLKINAKLNGINHYVN------------------------------------------------------------ 195 (387)
Q Consensus 176 ~~ni~lKiN~KlGG~n~~l~------------------------------------------------------------ 195 (387)
+.||++|||+||||+||.+.
T Consensus 168 ~~NI~lKin~KlGG~n~~v~~~~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Vas~d~~~~~y~~~~~~q~~~~e~ 247 (426)
T cd04657 168 FANVALKINLKLGGINHSLEPDIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHLAQYPASVRLQSHRQEI 247 (426)
T ss_pred HHHHHHHHHHhcCCEeeecccccccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEEecCCcccccceEEEEeCCCcch
Confidence 99999999999999999763
Q ss_pred -------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccC
Q psy6533 196 -------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPT 256 (387)
Q Consensus 196 -------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~ 256 (387)
|.+|++|||||||||||||..|++.|+++|++||.+++.+|.|+||||+|+||||+|||+.
T Consensus 248 i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~~E~~~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~ 327 (426)
T cd04657 248 IDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITFIVVQKRHHTRFFPT 327 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEeccceeeeEecc
Confidence 7899999999999999999999999999999999999988999999999999999999997
Q ss_pred CCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCc
Q psy6533 257 SPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSV 336 (387)
Q Consensus 257 ~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~v 336 (387)
+..+.....+||+||||||++||+|..+||||+||.++|||||||||+||+||+++++|+||+|||+|||+|+||+++|
T Consensus 328 -~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d~~~~~~d~lq~lt~~lc~~y~~~~~~v 406 (426)
T cd04657 328 -DEDDADGKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWDEIGFTADELQTLTYNLCYTYARCTRSV 406 (426)
T ss_pred -CcccccccCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCc
Confidence 3222222479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHhhhhhhh
Q psy6533 337 SYPAPTYYAHLAAFRGRVYI 356 (387)
Q Consensus 337 slPaP~~yA~~~a~R~~~~~ 356 (387)
|+|+|+||||++|+|||+|+
T Consensus 407 sip~p~~yA~~la~r~r~~~ 426 (426)
T cd04657 407 SIPPPAYYAHLAAARARCYL 426 (426)
T ss_pred ccchHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 2
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=2.2e-64 Score=553.47 Aligned_cols=309 Identities=32% Similarity=0.520 Sum_probs=238.6
Q ss_pred CCCeeEEEeeccC----ChhHHHHHHHh-cCCCCCccccccccccc--chHHHHHHHHHHHhhhccCCCcEEEEEecccc
Q psy6533 36 VKPVHIIFYRDGV----SEGQFQAVMRR-CGPCSNRSVAGLSYTIF--TGAEISAIKRACQGVEANYNPKVTFLVVQKRH 108 (387)
Q Consensus 36 ~~P~~Ii~yRDGV----segq~~~v~~~-~~~~~~~~~~~~~y~~~--~~~E~~~ik~a~~~~~~~~~Pk~t~Ivv~Krh 108 (387)
.||..-|.|+++- ..|....--.. ..+-..+.|+.+.+... ....+..+.++|..+|....++.. +.....
T Consensus 448 vL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~--~~~~~~ 525 (900)
T PLN03202 448 VLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFD--VFEENP 525 (900)
T ss_pred EcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCcc--cccccc
Confidence 4677788887652 22443211000 12234567887754321 234677888899988876643322 121111
Q ss_pred cccccCCCCCC-CC---CCCCCCCCCccccccccccCC--Ccceeeeeec--eeeecceeeeccccccccCCchhHHHHH
Q psy6533 109 HTRFFPTSPSE-GD---GSRNNNVRPGTIVDTTITHPT--DLDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATTGNIL 180 (387)
Q Consensus 109 htRff~~~~~~-~~---~~~~~N~~pGTvVD~~Vt~P~--~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~~ni~ 180 (387)
. +......+ .+ .....+..+++.+ .++++|. ..+.|..+|+ ++..||+||||... +.++|++.||+
T Consensus 526 ~--~~~~~~~~~~~~~~~~l~~~~~~~~ql-v~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~---~~~~q~~~NIa 599 (900)
T PLN03202 526 Q--FRRAPPPVRVEKMFEQIQSKLPGPPQF-LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPT---RVNDQYLTNVL 599 (900)
T ss_pred c--cccccchHHHHHHHHHHHHhccCCCeE-EEEEEcCCCCcchHHHHHHHHhhccCcccEEeCcc---ccchHHHHHHH
Confidence 1 10000000 00 0001122223333 3567784 5778999999 88999999999543 34889999999
Q ss_pred HHHHhhcCCcccccc-----------------------------------------------------------------
Q psy6533 181 LKINAKLNGINHYVN----------------------------------------------------------------- 195 (387)
Q Consensus 181 lKiN~KlGG~n~~l~----------------------------------------------------------------- 195 (387)
+|||+||||+||.+.
T Consensus 600 lKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~ 679 (900)
T PLN03202 600 LKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMID 679 (900)
T ss_pred HHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeee
Confidence 999999999996531
Q ss_pred ---------------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeec
Q psy6533 196 ---------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKR 248 (387)
Q Consensus 196 ---------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Kr 248 (387)
|.+|++|||||||||||||.+|++.|+++|++||++++.+|.|+||||||+||
T Consensus 680 ~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Kr 759 (900)
T PLN03202 680 SLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKN 759 (900)
T ss_pred ehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEecc
Confidence 47999999999999999999999999999999999999889999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhh
Q psy6533 249 HHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHL 328 (387)
Q Consensus 249 h~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~ 328 (387)
||+|||+. ++.+||+||||||++||+|..|||||+||.++|||||||||+||+||+++++|+||+|||+|||+
T Consensus 760 h~tRff~~-------~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~ 832 (900)
T PLN03202 760 HHTKFFQA-------GSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYV 832 (900)
T ss_pred ceeeeecc-------CCCCCCCCceEeccccccCCcceEEEecccccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 99999986 23589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccCcchHHHHHHHHhhhhhhhccc
Q psy6533 329 FSRCTRSVSYPAPTYYAHLAAFRGRVYIKNR 359 (387)
Q Consensus 329 y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~ 359 (387)
|+||+++|||||||||||++|+||++||...
T Consensus 833 y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~ 863 (900)
T PLN03202 833 YQRSTTAISVVAPVCYAHLAAAQMGQFMKFE 863 (900)
T ss_pred hcccCCceecchhHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999999999999743
No 3
>KOG1041|consensus
Probab=100.00 E-value=8.3e-61 Score=522.20 Aligned_cols=308 Identities=36% Similarity=0.598 Sum_probs=246.7
Q ss_pred CCCCeeEEEeecc-C----ChhHHHHHHH-hcCCCCCcccccccccccc----hHHHHHHHHHHHhhhccCCCcEEEEEe
Q psy6533 35 KVKPVHIIFYRDG-V----SEGQFQAVMR-RCGPCSNRSVAGLSYTIFT----GAEISAIKRACQGVEANYNPKVTFLVV 104 (387)
Q Consensus 35 ~~~P~~Ii~yRDG-V----segq~~~v~~-~~~~~~~~~~~~~~y~~~~----~~E~~~ik~a~~~~~~~~~Pk~t~Ivv 104 (387)
..||..-|.|.++ . ..|+...--. ...+-.-++|+.+.++.-. ...+.+|.+.|+..|+....
T Consensus 427 rvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~~~~~f~~~L~~~c~~~Gm~i~~------- 499 (876)
T KOG1041|consen 427 RVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETLRQKQFVDELIKICKDKGMEIKR------- 499 (876)
T ss_pred cccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccccHHHHHHHHHHHHHHcCccccc-------
Confidence 4688888888888 1 1111111000 0113344567766655332 25788899999988875531
Q ss_pred cccccccccCCCCCC-----CCCCCCCCCCCccccccccccC-CCcceeeeeec--eeeecceeeeccccccccCCchhH
Q psy6533 105 QKRHHTRFFPTSPSE-----GDGSRNNNVRPGTIVDTTITHP-TDLDFYLVSHQ--SIQVGILTQCIKEKTVFKMNPATT 176 (387)
Q Consensus 105 ~KrhhtRff~~~~~~-----~~~~~~~N~~pGTvVD~~Vt~P-~~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~n~~~~ 176 (387)
+. .+...... .......+..+|..+. +++.| ...+.|..+|+ +...|++|||+...++.+..+||+
T Consensus 500 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li-~~I~~~k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl 573 (876)
T KOG1041|consen 500 ---PR--KWAPTEESLEDMITEKSSMEKAAAGVQLV-FIILPEKNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTL 573 (876)
T ss_pred ---cc--ccCcccchhHHHHHHHHhhhccCCCceEE-EEEECCCCcchhHHHHHHHHHhcCceeEEeecchhcccchHHH
Confidence 11 22211000 0000112223555553 45555 55788999999 566799999999999999899999
Q ss_pred HHHHHHHHhhcCCcccccc-------------------------------------------------------------
Q psy6533 177 GNILLKINAKLNGINHYVN------------------------------------------------------------- 195 (387)
Q Consensus 177 ~ni~lKiN~KlGG~n~~l~------------------------------------------------------------- 195 (387)
+||++|||+||||+|+.+.
T Consensus 574 ~Nl~lKiN~KlGG~N~~l~~~~~~~~~~~~~ptl~IG~dVsHp~~~~~~~~~PSiagvv~s~~~~~~~y~g~~~~Q~~r~ 653 (876)
T KOG1041|consen 574 ANLILKINVKLGGLNYVLVSPRSSRGPKLDSPTLFIGFDVSHPAAGTSFDGNPSIVGVVYNLDWHPQKFAGFVRFQKSRQ 653 (876)
T ss_pred HHHHHHHhhccCceeeEEecccccCcccCCCCeEEEEEeeeCCCcCCCcCCCccEEEEEecccccchhhcceEEEecCCh
Confidence 9999999999999998543
Q ss_pred ---------------------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccc
Q psy6533 196 ---------------------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFF 254 (387)
Q Consensus 196 ---------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff 254 (387)
+.+|++|||||||||||||.+|+++|+.+|++||..+..+|.|+||||||+||||+|||
T Consensus 654 e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F 733 (876)
T KOG1041|consen 654 EVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLF 733 (876)
T ss_pred hhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeee
Confidence 77999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccC
Q psy6533 255 PTSPSE-GDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCT 333 (387)
Q Consensus 255 ~~~~~~-~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~ 333 (387)
+. +.. +..+..+|++|||+||+.||+|..+||||+||.++|||+||||||||+||+++++|+||+|||.|||+|++|+
T Consensus 734 ~~-~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g~qGTsrp~~Y~VL~dd~~~~~d~lq~lt~~Lc~~~qr~t 812 (876)
T KOG1041|consen 734 AA-ELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHGLQGTSKPTHYTVLYDDIGFSKDELQKLTYALCFTHQRCT 812 (876)
T ss_pred cc-cCCCCccCCccCCCCCCEecccccCCCcceEEEeccCcccccccCceEEEEeCCCCCCHHHHHHHHHHHhhheeeec
Confidence 98 433 4556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcchHHHHHHHHhhhhhhh
Q psy6533 334 RSVSYPAPTYYAHLAAFRGRVYI 356 (387)
Q Consensus 334 ~~vslPaP~~yA~~~a~R~~~~~ 356 (387)
.|||||+|+||||++|+|||.+.
T Consensus 813 ~pvSiP~P~YyA~~~A~Rgr~~~ 835 (876)
T KOG1041|consen 813 KPVSLPAPLYYAHEVAKRGRNNY 835 (876)
T ss_pred CCCcCCchHHHHHHHHHHhhhhh
Confidence 99999999999999999999994
No 4
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.5e-60 Score=476.89 Aligned_cols=272 Identities=35% Similarity=0.551 Sum_probs=222.9
Q ss_pred ccccccccccc-chHHHHHHHHHHHhhhccCC--CcEEEEEeccc-cc--ccccCCCCCCCCCCCCCCCCCccccccccc
Q psy6533 66 RSVAGLSYTIF-TGAEISAIKRACQGVEANYN--PKVTFLVVQKR-HH--TRFFPTSPSEGDGSRNNNVRPGTIVDTTIT 139 (387)
Q Consensus 66 ~~~~~~~y~~~-~~~E~~~ik~a~~~~~~~~~--Pk~t~Ivv~Kr-hh--tRff~~~~~~~~~~~~~N~~pGTvVD~~Vt 139 (387)
+.|+.+..... ....+..+.++|..+|.... |+..++..... -. .+-|.. ....+..+ ..++
T Consensus 36 ~~W~vi~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l-v~~i 103 (393)
T cd02826 36 NPVAVIAFRNEEVDDLVKRLADACRQLGMKIKEIPIVSWIEDLNNSFKDLKSVFKN-----------AIKAGVQL-VIFI 103 (393)
T ss_pred CeEEEEEcccHHHHHHHHHHHHHHHhCCCccCCCCCcceeecccccHHHHHHHHHH-----------HhhcCCCE-EEEE
Confidence 56776654321 12356788899999887654 44444332111 00 011110 01112222 2456
Q ss_pred cCC-Ccceeeeeec-eeeecceeeecccccccc--CCchhHHHHHHHHHhhcCCcccccc--------------------
Q psy6533 140 HPT-DLDFYLVSHQ-SIQVGILTQCIKEKTVFK--MNPATTGNILLKINAKLNGINHYVN-------------------- 195 (387)
Q Consensus 140 ~P~-~~dfY~~~k~-~~~~GI~TQcv~~~tv~k--~n~~~~~ni~lKiN~KlGG~n~~l~-------------------- 195 (387)
.|. ..++|..+|+ +...||+|||+..+++.+ .++++++||++|||+||||+||.+.
T Consensus 104 lp~~~~~~Y~~iK~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~Ni~lkin~KlGG~~~~l~~~~~~~~~tmiiGiDv~h~~ 183 (393)
T cd02826 104 LKEKKPPLHDEIKRLEAKSDIPSQVIQLKTAKKMRRLKQTLDNLLRKVNSKLGGINYILDSPVKLFKSDIFIGFDVSHPD 183 (393)
T ss_pred EcCCCccHHHHHHHHHhccCCceEEEehhhhccccccHHHHHHHHHHHhhhhCCeeeEeccCCCCCCCEEEEEEEeeCCC
Confidence 674 4599999999 443499999999999876 5789999999999999999999863
Q ss_pred -------------------------------------------------------CC-CCceEEEeccCCChhhHHHHHH
Q psy6533 196 -------------------------------------------------------KV-KPVHIIFYRDGVSEGQFQAVMS 219 (387)
Q Consensus 196 -------------------------------------------------------~~-~P~~IIiYRdGvsegq~~~v~~ 219 (387)
|. +|++|||||||||||||+.|++
T Consensus 184 ~~~~~~~~si~~~vas~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~ 263 (393)
T cd02826 184 RRTVNGGPSAVGFAANLSNHTFLGGFLYVQPSREVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKE 263 (393)
T ss_pred CCCCCCCCcEEEEEeecCCccccceEEEEecCccchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHH
Confidence 67 9999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeecccccccccc
Q psy6533 220 AEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTA 299 (387)
Q Consensus 220 ~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTa 299 (387)
.|+++|++||. +..+|+|+||+|+|+||||+|||+..+ .+..+||+||||||++||+|..+||||+||.++|||+
T Consensus 264 ~e~~~i~~a~~-~~~~~~p~it~Ivv~Krh~~Rff~~~~----~~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~ 338 (393)
T cd02826 264 EVEEIIKEACE-IEESYRPKLVIIVVQKRHNTRFFPNEK----NGGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTV 338 (393)
T ss_pred HHHHHHHHHHh-hCCCCCCCEEEEEEeccccceeccCCC----CCCCCCCCCceEeccccccCCcceEEEeccccCcCCC
Confidence 99999999999 778899999999999999999999722 2234899999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhh
Q psy6533 300 RPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRV 354 (387)
Q Consensus 300 rPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~ 354 (387)
||+||+||+|++++++|+||+|||+|||+|+||+++||+|+|+||||++|+|||+
T Consensus 339 rP~~Y~Vl~d~~~~~~d~lq~lty~lc~~y~~~~~~vslP~p~~yA~~~a~r~rn 393 (393)
T cd02826 339 KPTKYTVVFNDKNWSLNELEILTYILCLTHQNVYSPISLPAPLYYAHKLAKRGRN 393 (393)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhcccccCCCcccChHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999985
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=4.2e-59 Score=479.46 Aligned_cols=303 Identities=31% Similarity=0.483 Sum_probs=238.0
Q ss_pred CCCeeEEEeeccC----ChhHHHHHHHh---cCCCCCcccccccccc---cchHHHHHHHHHHHhhhccCCCcEEEEEec
Q psy6533 36 VKPVHIIFYRDGV----SEGQFQAVMRR---CGPCSNRSVAGLSYTI---FTGAEISAIKRACQGVEANYNPKVTFLVVQ 105 (387)
Q Consensus 36 ~~P~~Ii~yRDGV----segq~~~v~~~---~~~~~~~~~~~~~y~~---~~~~E~~~ik~a~~~~~~~~~Pk~t~Ivv~ 105 (387)
.||..-|.|+++. ..|....-+.. ..+...+.|+.+.... -....++.+.+.+..+|.....+.. +.+.
T Consensus 56 vL~~P~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~-~~~~ 134 (448)
T cd04658 56 VLPPEQIIMGNVFVYANSNADWKREIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKI-IKVK 134 (448)
T ss_pred EeCCCeEEeCCCccCCCCCCCcchhhcCCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeE-EEeC
Confidence 4777788888762 23333221100 1233456788665421 1234677888888888877644332 2222
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccccccccCCC-cceeeeeec--eeeecceeeeccccccccC--CchhHHHHH
Q psy6533 106 KRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTD-LDFYLVSHQ--SIQVGILTQCIKEKTVFKM--NPATTGNIL 180 (387)
Q Consensus 106 KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~-~dfY~~~k~--~~~~GI~TQcv~~~tv~k~--n~~~~~ni~ 180 (387)
.+.-..++.. ..+ . .+-.|-. .+++.|.. .+.|..+|+ +...||+|||+...++.+. ..+++.||+
T Consensus 135 ~~~~~~~~~~-l~~----~-~~~~~~l---vvvilp~~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~ 205 (448)
T cd04658 135 DDRIETYIRA-LKD----A-FRSDPQL---VVIILPGNKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIA 205 (448)
T ss_pred CCCHHHHHHH-HHH----h-hcCCCcE---EEEEECCCCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHH
Confidence 2111112110 000 0 0011222 24677854 589999999 5669999999999998764 457899999
Q ss_pred HHHHhhcCCcccccc-----------------------------------------------------------------
Q psy6533 181 LKINAKLNGINHYVN----------------------------------------------------------------- 195 (387)
Q Consensus 181 lKiN~KlGG~n~~l~----------------------------------------------------------------- 195 (387)
+|||+||||+||.+.
T Consensus 206 lkinaKlGG~~w~l~~~~~~~~~tmiiGidv~h~~~~~~~Si~a~vas~~~~~~~~~~~~~~q~~~~e~~~~~l~~~~~~ 285 (448)
T cd04658 206 LQINAKLGGIPWTVEIPPFILKNTMIVGIDVYHDTITKKKSVVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKK 285 (448)
T ss_pred HHHHHHhCCcceEeccCCCCCCCeEEEEEeeecCCCCCCCcEEEEEEEcCCCCceEeeEEEEeCCCceeeHHHHHHHHHH
Confidence 999999999999765
Q ss_pred ---------CCCCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCCCCCCCCC
Q psy6533 196 ---------KVKPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRN 266 (387)
Q Consensus 196 ---------~~~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~ 266 (387)
|.+|++|||||||||||||..|++.|+++|++||..+..+|.|+||||+|+||||+|||+. + .+..
T Consensus 286 ~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~-~----~~~~ 360 (448)
T cd04658 286 ALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQ-G----GNNF 360 (448)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecC-C----CCCC
Confidence 8999999999999999999999999999999999998888999999999999999999997 2 2345
Q ss_pred CCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHH
Q psy6533 267 NNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAH 346 (387)
Q Consensus 267 ~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~ 346 (387)
+||+||||||++||+|..+||||+||.++|||||||||+||+|++++++|+||+|||+|||+|+||+++||+|+|+||||
T Consensus 361 ~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~~~~~~~~lq~lt~~lc~~y~~~~~~vs~P~p~~yA~ 440 (448)
T cd04658 361 SNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKPDHLQRLTYKLCHLYYNWSGSIRVPAPCQYAH 440 (448)
T ss_pred CCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECCCCCCHHHHHHHHHHhhhcccCCCCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy6533 347 LAAFRGR 353 (387)
Q Consensus 347 ~~a~R~~ 353 (387)
++|+|..
T Consensus 441 ~~a~~~g 447 (448)
T cd04658 441 KLAFLVG 447 (448)
T ss_pred HHHHHhc
Confidence 9999753
No 6
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=1.5e-57 Score=444.30 Aligned_cols=216 Identities=51% Similarity=0.797 Sum_probs=192.3
Q ss_pred cccC-CCcceeeeeec--eeeecceeeeccccccccC--CchhHHHHHHHHHhhcCCcc-cccc----------------
Q psy6533 138 ITHP-TDLDFYLVSHQ--SIQVGILTQCIKEKTVFKM--NPATTGNILLKINAKLNGIN-HYVN---------------- 195 (387)
Q Consensus 138 Vt~P-~~~dfY~~~k~--~~~~GI~TQcv~~~tv~k~--n~~~~~ni~lKiN~KlGG~n-~~l~---------------- 195 (387)
++.| ...+.|..+|+ +.+.||+|||+..+++.+. ..+++.||++|||+||||+| |.++
T Consensus 4 ~ii~~~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~~~~~~~~~miIGid 83 (302)
T PF02171_consen 4 VIIPDKNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSPPSIDLKNTMIIGID 83 (302)
T ss_dssp EEESSSSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCSSGSSESEEEEEEEE
T ss_pred EEEeCCChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccccccccCceEEEEEE
Confidence 4556 56778999999 6778999999999999887 46999999999999999995 4322
Q ss_pred ------------------------------------------------------------CC-CCceEEEeccCCChhhH
Q psy6533 196 ------------------------------------------------------------KV-KPVHIIFYRDGVSEGQF 214 (387)
Q Consensus 196 ------------------------------------------------------------~~-~P~~IIiYRdGvsegq~ 214 (387)
+. +|++|||||||||||||
T Consensus 84 v~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~ 163 (302)
T PF02171_consen 84 VSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQDSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQF 163 (302)
T ss_dssp EEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGH
T ss_pred EEecCcccCCcceeeEEEEeccCccccccceeEEeccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhh
Confidence 55 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccc
Q psy6533 215 QAVMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 294 (387)
Q Consensus 215 ~~v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~ 294 (387)
..+++.|+++|++||.+++.+|.|++++|+|+|||++|||+.++ .+...||+||||||+.+|+|..+||||+||.+
T Consensus 164 ~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~----~~~~~N~~~Gtvvd~~i~~~~~~~f~l~s~~~ 239 (302)
T PF02171_consen 164 KKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNG----RDGLQNPPPGTVVDTGITSPNYFEFYLVSHTA 239 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSS----EETTTEECTTEEESSEEEECSBEEEEEETSCC
T ss_pred cccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeeccc----ccccCCCCCCeeeccceeeecceeeeeeeccc
Confidence 99999999999999999999999999999999999999999822 22579999999999999999999999999999
Q ss_pred cccccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhc
Q psy6533 295 IQGTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIK 357 (387)
Q Consensus 295 ~qGTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~ 357 (387)
.|||+||+||+||+|++.+++|+||++||+|||+|++|++++|+|+|+||||++|+|++++|+
T Consensus 240 ~~Gt~~P~~y~vl~~~~~~~~~~l~~~t~~L~~~~~~~~~~~~lP~p~~yA~~~a~~~~~~~~ 302 (302)
T PF02171_consen 240 RQGTARPTHYTVLYDDSNLSMDELQQLTYSLCHLYQNSTGPISLPAPLYYAHKLAKRGRNNLK 302 (302)
T ss_dssp CSSSEEEEEEEEEEESSCSCHHHHHHHHHHHTTGGTTSSS--SS-HHHHHHHHHHHHHHHHC-
T ss_pred ccccccccEEEEecCcccccHHHHHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999874
No 7
>KOG1042|consensus
Probab=100.00 E-value=4.4e-56 Score=453.03 Aligned_cols=267 Identities=29% Similarity=0.476 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccC-CCcceeeeeec--eee
Q psy6533 79 AEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHP-TDLDFYLVSHQ--SIQ 155 (387)
Q Consensus 79 ~E~~~ik~a~~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P-~~~dfY~~~k~--~~~ 155 (387)
..++.+.++...+|+...+++.+.+-..|..|-.=.. .+. +.+-+.+ .+|+.| ...+.|..+|+ +++
T Consensus 489 ~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvrai--qq~-------v~~D~qm-vvcil~~~nk~~Y~sIKK~~cvd 558 (845)
T KOG1042|consen 489 EFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAI--QQV-------VGADIQM-VVCILPSDNKTRYDSIKKYLCVD 558 (845)
T ss_pred HHHHHHHHhccccceecCCceEEEeCCCChHHHHHHH--HHh-------ccCCceE-EEEEecCCchhhHHHHHhheecc
Confidence 3567777777788888888888888777777633221 111 1222233 235555 77889999999 889
Q ss_pred ecceeeeccccccccC--CchhHHHHHHHHHhhcCCcccccc--------------------------------------
Q psy6533 156 VGILTQCIKEKTVFKM--NPATTGNILLKINAKLNGINHYVN-------------------------------------- 195 (387)
Q Consensus 156 ~GI~TQcv~~~tv~k~--n~~~~~ni~lKiN~KlGG~n~~l~-------------------------------------- 195 (387)
.+||||||..+|+.+. -.++..+|++||||||||..|.++
T Consensus 559 ~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~IPLk~lMiVG~Dv~hd~~~k~rsvga~VAs~n~~~tr~ 638 (845)
T KOG1042|consen 559 CPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVEIPLKGLMIVGFDVYHDPTLKGRSVGAFVASMNNDFTRW 638 (845)
T ss_pred CCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEeeecccceEEEEEeecCccccCceEEEEEEeeccchhhh
Confidence 9999999999998765 457889999999999999999875
Q ss_pred --------------------------------CCCCceEEEeccCCChhhHHHHHHHHHH----HHHHHHhhcccCCCCc
Q psy6533 196 --------------------------------KVKPVHIIFYRDGVSEGQFQAVMSAEIS----AIKRACQGVEANYNPK 239 (387)
Q Consensus 196 --------------------------------~~~P~~IIiYRdGvsegq~~~v~~~Ev~----~I~~a~~~~~~~~~Pk 239 (387)
..+|++||+|||||||||+..+.+.||+ ++.+.+++++.++.|+
T Consensus 639 fS~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~~~~~r 718 (845)
T KOG1042|consen 639 FSRVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSNKEKPR 718 (845)
T ss_pred hhheecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcCCCCCc
Confidence 7899999999999999999999999999 7777888888889999
Q ss_pred EEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeeccccccccccCCceEEEEecCCCCCHHHHH
Q psy6533 240 VTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQGTARPTKYYRLWDEYNLTDDETE 319 (387)
Q Consensus 240 it~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~qGTarPt~Y~Vl~d~~~~~~d~lq 319 (387)
++||||+||.++|||.. .+....||+||||||++||.|..+||||+||...|||+.||+|.||||++++++|.+|
T Consensus 719 l~~iVV~KrvntR~f~~-----~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQ 793 (845)
T KOG1042|consen 719 LAVIVVTKRVNTRFFLQ-----GSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQ 793 (845)
T ss_pred EEEEEEEeeccHHHHhh-----CCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHH
Confidence 99999999999999998 2346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhcccC
Q psy6533 320 EMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRH 360 (387)
Q Consensus 320 ~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~~ 360 (387)
+|||+|||+|+||+++|++||||+|||++|+-.+..|+..+
T Consensus 794 rLtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ep 834 (845)
T KOG1042|consen 794 RLTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHREP 834 (845)
T ss_pred HHHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhch
Confidence 99999999999999999999999999999987777665543
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=4e-36 Score=305.34 Aligned_cols=187 Identities=25% Similarity=0.258 Sum_probs=167.4
Q ss_pred cceeeeeec-eeeecceeeeccccccccC--CchhHHHHHHHHHhhcCCcccccc-------------------------
Q psy6533 144 LDFYLVSHQ-SIQVGILTQCIKEKTVFKM--NPATTGNILLKINAKLNGINHYVN------------------------- 195 (387)
Q Consensus 144 ~dfY~~~k~-~~~~GI~TQcv~~~tv~k~--n~~~~~ni~lKiN~KlGG~n~~l~------------------------- 195 (387)
.++|..+|+ .+..||+||||...|+.+. ..+++.||+++||+|+||++|.|.
T Consensus 129 ~~~Y~~iK~~~~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~aKlGG~pW~l~~~~~~~~~iIGidv~~~~~~~~~~~ 208 (404)
T cd04659 129 FDLYDRLKAKLLRLGIPTQFVREDTLKNRQDLAYVAWNLALALYAKLGGIPWKLDADSDPADLYIGIGFARSRDGEVRVT 208 (404)
T ss_pred cCHHHHHHHHHHhcCCceEEeeHHHcCccccHHHHHHHHHHHHHHhcCCCceEcccCCCCCeEEEEEEEEEcCCCCEEEE
Confidence 689999999 7889999999999998764 567999999999999999999863
Q ss_pred -----------------------------------------------CC-CCceEEEeccCCChhhHHHHHHHHHHHHHH
Q psy6533 196 -----------------------------------------------KV-KPVHIIFYRDGVSEGQFQAVMSAEISAIKR 227 (387)
Q Consensus 196 -----------------------------------------------~~-~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~ 227 (387)
+. +|++|||||||+. .+.|+++|++
T Consensus 209 ~~a~vf~~~g~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~ 281 (404)
T cd04659 209 GCAQVFDSDGLGLILRGAPIEEPTEDRSPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKE 281 (404)
T ss_pred EEEEEEcCCCCEEEEecCccCCcccccCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHH
Confidence 45 9999999999983 6899999999
Q ss_pred HHhhcccCCCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeecccccc--------cccc
Q psy6533 228 ACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSI--------QGTA 299 (387)
Q Consensus 228 a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s~~~~--------qGTa 299 (387)
||.+++ |++++|+|+|+|++|||.. +.. ....||++||+||.+ .+||||++|.+. +||+
T Consensus 282 a~~~~~----~~i~~I~V~k~~~~R~f~~-~~~---~~~~np~~GT~v~~~-----~~~~~L~s~g~~~~~~~~~~~gtp 348 (404)
T cd04659 282 ALEELG----IKVDLVEVIKSGPHRLFRF-GTY---PNGFPPRRGTYVKLS-----DDEGLLWTHGSVPKYNTYPGMGTP 348 (404)
T ss_pred HHHhhC----ceEEEEEEEecCCcceEEe-cCC---CCCCCCCCceEEEeC-----CCeEEEEecCCccccccCCCCCCC
Confidence 999885 8999999999999999996 221 112899999999854 499999999885 9999
Q ss_pred CCceEEEEecCCCCCHHHHHHHHHHhhhhccccCC-CccCcchHHHHHHHHhhh
Q psy6533 300 RPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTR-SVSYPAPTYYAHLAAFRG 352 (387)
Q Consensus 300 rPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~-~vslPaP~~yA~~~a~R~ 352 (387)
+|+| |++|+...+.++|+++||.||++|+|++. ++++|+|++|||++|+..
T Consensus 349 ~Pl~--v~~~~~~~~~~~l~~~~~~Lt~~~~n~~~~~~~lP~ti~YA~~~a~~~ 400 (404)
T cd04659 349 RPLL--LRRHSGNTDLEQLASQILGLTKLNWNSFQFYSRLPVTIHYADRVAKLL 400 (404)
T ss_pred CcEE--EEEccCCCCHHHHHHHHHHHhhcCcCCCCCCCCcceEEeHHHHHHHHH
Confidence 9999 88898889999999999999999999999 999999999999999743
No 9
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=99.97 E-value=5.6e-30 Score=262.14 Aligned_cols=157 Identities=38% Similarity=0.666 Sum_probs=129.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHH
Q psy6533 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRAC 88 (387)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~ 88 (387)
++.++|.+++|+..++++|+.|++.|+.+|++|||||||||||||.+|++ .|+.+|++||
T Consensus 241 q~~~~e~i~~l~~~~~~~l~~~~~~~~~~P~~IiiyRDGvsegq~~~v~~--------------------~E~~~i~~a~ 300 (426)
T cd04657 241 QSHRQEIIDDLESMVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLN--------------------EELPAIRKAC 300 (426)
T ss_pred eCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEEcCcCHHHHHHHHH--------------------HHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999997 8999999999
Q ss_pred HhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece---eeecceeeeccc
Q psy6533 89 QGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS---IQVGILTQCIKE 165 (387)
Q Consensus 89 ~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~---~~~GI~TQcv~~ 165 (387)
..++..|+|++|||||+||||+|||+.+..+.++ ..+|++|||+||+.||+|..+||||++|.. +..++...++..
T Consensus 301 ~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~-~~~N~~pGTvVd~~it~p~~~dFyL~sh~~~qGTarPt~Y~vl~d 379 (426)
T cd04657 301 AKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADG-KNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARPTHYHVLWD 379 (426)
T ss_pred HHhccCCCCcEEEEEeccceeeeEeccCcccccc-cCCCCCCCeEEecccCCCCceeEEEeccccCccCCCCceEEEEEC
Confidence 9998889999999999999999999975543322 368999999999999999999999999983 333444445554
Q ss_pred cccccCCchhHHHHHHHHHhhcC
Q psy6533 166 KTVFKMNPATTGNILLKINAKLN 188 (387)
Q Consensus 166 ~tv~k~n~~~~~ni~lKiN~KlG 188 (387)
.+- .+...+.++..+++.-.+
T Consensus 380 ~~~--~~~d~lq~lt~~lc~~y~ 400 (426)
T cd04657 380 EIG--FTADELQTLTYNLCYTYA 400 (426)
T ss_pred CCC--CCHHHHHHHHHHHhhccc
Confidence 432 244566666666665443
No 10
>PLN03202 protein argonaute; Provisional
Probab=99.95 E-value=4.1e-28 Score=267.29 Aligned_cols=149 Identities=30% Similarity=0.499 Sum_probs=122.1
Q ss_pred hhhhhhhHHH---------HHHHHHHHHHHHHhc-CCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchH
Q psy6533 10 KKKKKKKEEE---------EKKQKKQKKKKKKVN-KVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGA 79 (387)
Q Consensus 10 ~~~~~~~~~~---------~~~~~~~~~~~~~~n-~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~ 79 (387)
..+.|.+++| +..++++++.|++.+ +.+|++|||||||||||||.+|++ .
T Consensus 672 ~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~Vl~--------------------~ 731 (900)
T PLN03202 672 SPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLN--------------------I 731 (900)
T ss_pred CCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHHHHH--------------------H
Confidence 3456666664 778899998888765 699999999999999999999997 7
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece---eee
Q psy6533 80 EISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS---IQV 156 (387)
Q Consensus 80 E~~~ik~a~~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~---~~~ 156 (387)
|+.+|++||..++.+|+|+||||||+||||||||+. +..+|++|||+||+.||+|..+||||++|.. +..
T Consensus 732 Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~-------~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTar 804 (900)
T PLN03202 732 ELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQA-------GSPDNVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTR 804 (900)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeecc-------CCCCCCCCceEeccccccCCcceEEEecccccccCCc
Confidence 999999999999888999999999999999999984 1358999999999999999999999999983 344
Q ss_pred cceeeeccccccccCCchhHHHHHHHHHhhc
Q psy6533 157 GILTQCIKEKTVFKMNPATTGNILLKINAKL 187 (387)
Q Consensus 157 GI~TQcv~~~tv~k~n~~~~~ni~lKiN~Kl 187 (387)
++...++...+- ..+..+.++..+++.-.
T Consensus 805 PthY~Vl~de~~--~~~d~lq~lty~lc~~y 833 (900)
T PLN03202 805 PTHYHVLLDEIG--FSADDLQELVHSLSYVY 833 (900)
T ss_pred CceEEEEECCCC--CCHHHHHHHHHHHhhhh
Confidence 555556655542 24556666666666443
No 11
>KOG1041|consensus
Probab=99.95 E-value=1.4e-27 Score=261.63 Aligned_cols=125 Identities=43% Similarity=0.735 Sum_probs=114.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHH
Q psy6533 9 KKKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRAC 88 (387)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~ 88 (387)
++.+.|.|.+++.++.+.+..|++.++.+|.+|||||||||||||.+|++ .|+.+|++||
T Consensus 649 Q~~r~e~i~~~~~~~~~~l~~f~~~t~~~P~~IIiyRdGvSEgqf~~vl~--------------------~E~~~ir~a~ 708 (876)
T KOG1041|consen 649 QKSRQEVIQDLGEMIRELLRSFRKSTRKLPDRIVIYRDGVSEGQFSMVLE--------------------EELRAIKEAC 708 (876)
T ss_pred ecCChhhhcchHHHHHHHHHHHHHhccCCCceEEEEecCCccchHHHHHH--------------------HHHHHHHHHH
Confidence 34566777779999999999999999999999999999999999999997 7999999999
Q ss_pred HhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece
Q psy6533 89 QGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153 (387)
Q Consensus 89 ~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~ 153 (387)
..+..+|+|++|||||+||||||||+.+......+..+|++|||+||+.||+|..+|||+++|..
T Consensus 709 ~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~~dFyL~sh~g 773 (876)
T KOG1041|consen 709 KKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGYFDFYLCSHHG 773 (876)
T ss_pred HHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCcceEEEeccCc
Confidence 99999999999999999999999999877632334678999999999999999999999999983
No 12
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=99.94 E-value=1.7e-26 Score=237.79 Aligned_cols=148 Identities=35% Similarity=0.532 Sum_probs=120.7
Q ss_pred hhhhh-hHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHH
Q psy6533 11 KKKKK-KEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQ 89 (387)
Q Consensus 11 ~~~~~-~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~ 89 (387)
.+.|. ++.|+..++++++.|++.|+.+|++|||||||||||||..|++ .|+.+|++||.
T Consensus 270 ~~~e~~~~~l~~~~~~~l~~y~~~~~~~P~~IiiyRdGvsegq~~~v~~--------------------~E~~~i~~a~~ 329 (448)
T cd04658 270 RGQEEIIDSLGKSMKKALKAYKKENKKLPSRIIIYRDGVGDGQLKKVKE--------------------YEVPQIKKAIK 329 (448)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 34455 8999999999999999999999999999999999999999997 79999999999
Q ss_pred hhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece---eeecceeeecccc
Q psy6533 90 GVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS---IQVGILTQCIKEK 166 (387)
Q Consensus 90 ~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~---~~~GI~TQcv~~~ 166 (387)
.++..|+|++|||+|+||||+|||+.+. +..+|++|||+||+.|++|..+||||++|.. +..++...++...
T Consensus 330 ~~~~~~~p~it~ivv~Kr~~~Rff~~~~-----~~~~N~~~GTvVd~~it~p~~~dFyL~s~~~~qGtarP~~Y~Vl~d~ 404 (448)
T cd04658 330 QYSENYSPKLAYIVVNKRINTRFFNQGG-----NNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDT 404 (448)
T ss_pred HhCCCCCCCEEEEEEeccccceeecCCC-----CCCCCCCCCcEecccccCCCcccEEEeccccCccCCCCceEEEEECC
Confidence 8888899999999999999999998542 2458999999999999999999999999982 2233333444433
Q ss_pred ccccCCchhHHHHHHHHHh
Q psy6533 167 TVFKMNPATTGNILLKINA 185 (387)
Q Consensus 167 tv~k~n~~~~~ni~lKiN~ 185 (387)
+- .+...+..++..++.
T Consensus 405 ~~--~~~~~lq~lt~~lc~ 421 (448)
T cd04658 405 TG--LKPDHLQRLTYKLCH 421 (448)
T ss_pred CC--CCHHHHHHHHHHhhh
Confidence 31 234455555555543
No 13
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.94 E-value=3e-26 Score=232.39 Aligned_cols=145 Identities=36% Similarity=0.504 Sum_probs=117.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCC-CCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHhh
Q psy6533 13 KKKKEEEEKKQKKQKKKKKKVNKV-KPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGV 91 (387)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~n~~-~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~~ 91 (387)
.+.++++++.+++.|+.|++.|+. +|++|||||||||||||+.|++ .|+.++++||. .
T Consensus 217 ~~~~~~l~~~~~~~L~~y~~~~~~~~P~~IiiyRDGvsegq~~~v~~--------------------~e~~~i~~a~~-~ 275 (393)
T cd02826 217 EVKLQDLGEVIKKCLDGFKKSTGEGLPEKIVIYRDGVSEGEFKRVKE--------------------EVEEIIKEACE-I 275 (393)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCcceeEEEecCCCHHHHHHHHH--------------------HHHHHHHHHHh-h
Confidence 467789999999999999999999 9999999999999999999997 79999999998 7
Q ss_pred hccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeeceee---ecceeeecccccc
Q psy6533 92 EANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSIQ---VGILTQCIKEKTV 168 (387)
Q Consensus 92 ~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~~~---~GI~TQcv~~~tv 168 (387)
+.+|+|++|+|+|+||||+|||+.... ...+|++|||+||+.||+|..+||||++|...+ .++...++...+-
T Consensus 276 ~~~~~p~it~Ivv~Krh~~Rff~~~~~----~~~~Np~~GTvVd~~it~p~~~dFyL~sh~~~qGT~rP~~Y~Vl~d~~~ 351 (393)
T cd02826 276 EESYRPKLVIIVVQKRHNTRFFPNEKN----GGVQNPEPGTVVDHTITSPGLSEFYLASHVARQGTVKPTKYTVVFNDKN 351 (393)
T ss_pred CCCCCCCEEEEEEeccccceeccCCCC----CCCCCCCCceEeccccccCCcceEEEeccccCcCCCCCceEEEEECCCC
Confidence 778999999999999999999996432 234899999999999999999999999998332 2333344443331
Q ss_pred ccCCchhHHHHHHHHH
Q psy6533 169 FKMNPATTGNILLKIN 184 (387)
Q Consensus 169 ~k~n~~~~~ni~lKiN 184 (387)
.....+..+..+++
T Consensus 352 --~~~d~lq~lty~lc 365 (393)
T cd02826 352 --WSLNELEILTYILC 365 (393)
T ss_pred --CCHHHHHHHHHHHh
Confidence 23445555555544
No 14
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.93 E-value=7.3e-26 Score=221.00 Aligned_cols=149 Identities=40% Similarity=0.608 Sum_probs=119.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCC-CCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHH
Q psy6533 10 KKKKKKKEEEEKKQKKQKKKKKKVNKV-KPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRAC 88 (387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~n~~-~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~ 88 (387)
+.+++.++.+++.+++.++.|++.|+. +|++|||||||||||||..|++ .|+++|++||
T Consensus 119 ~~~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~--------------------~Ei~~i~~a~ 178 (302)
T PF02171_consen 119 DSGQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLE--------------------EEIEAIKEAI 178 (302)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHH--------------------HHHHHHHHHH
T ss_pred ccchhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHH--------------------HHHHHHHHHH
Confidence 456788889999999999999999998 9999999999999999999986 7999999999
Q ss_pred HhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeecee-eecceee--eccc
Q psy6533 89 QGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQSI-QVGILTQ--CIKE 165 (387)
Q Consensus 89 ~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~~-~~GI~TQ--cv~~ 165 (387)
..++.+|+|++++|+|+||||+|||+.+..+ ...|++|||+||+.+++|...+||+++|... ...-|+. ++..
T Consensus 179 ~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~----~~~N~~~Gtvvd~~i~~~~~~~f~l~s~~~~~Gt~~P~~y~vl~~ 254 (302)
T PF02171_consen 179 KELGEDYNPKITYIVVQKRHNTRFFPQNGRD----GLQNPPPGTVVDTGITSPNYFEFYLVSHTARQGTARPTHYTVLYD 254 (302)
T ss_dssp HHHTHTTCTEEEEEEEESSSS--EEESSSEE----TTTEECTTEEESSEEEECSBEEEEEETSCCCSSSEEEEEEEEEEE
T ss_pred hhcccCCCCcEEEEEeeccccceEeeccccc----ccCCCCCCeeeccceeeecceeeeeeecccccccccccEEEEecC
Confidence 9999999999999999999999999965322 4689999999999999999999999999832 2233443 4444
Q ss_pred cccccCCchhHHHHHHHHH
Q psy6533 166 KTVFKMNPATTGNILLKIN 184 (387)
Q Consensus 166 ~tv~k~n~~~~~ni~lKiN 184 (387)
.+ ......+.+++..++
T Consensus 255 ~~--~~~~~~l~~~t~~L~ 271 (302)
T PF02171_consen 255 DS--NLSMDELQQLTYSLC 271 (302)
T ss_dssp SS--CSCHHHHHHHHHHHT
T ss_pred cc--cccHHHHHHHHHHHH
Confidence 32 223345555555554
No 15
>KOG1042|consensus
Probab=99.89 E-value=8.3e-24 Score=217.25 Aligned_cols=148 Identities=30% Similarity=0.480 Sum_probs=121.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHH----HHH
Q psy6533 10 KKKKKKKEEEEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEIS----AIK 85 (387)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~----~ik 85 (387)
....+.-+.|.-.+.++|++|++.|..||++||+||||||+||+.++.+ .|++ ++.
T Consensus 646 ~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n--------------------~EV~~~~dql~ 705 (845)
T KOG1042|consen 646 ENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVN--------------------YEVPLVCDQLL 705 (845)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeee--------------------eccchHHHHHH
Confidence 4566778899999999999999999999999999999999999999987 4555 888
Q ss_pred HHHHhhhccCCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeec-eeeeccee--ee
Q psy6533 86 RACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQ-SIQVGILT--QC 162 (387)
Q Consensus 86 ~a~~~~~~~~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~-~~~~GI~T--Qc 162 (387)
....+++.+++|+++||||+||.++|||.... +..+||+||||||++||.|.+.|||+.++. ....+.|| -|
T Consensus 706 ~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~-----~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnv 780 (845)
T KOG1042|consen 706 DCYAELSNKEKPRLAVIVVTKRVNTRFFLQGS-----SNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNV 780 (845)
T ss_pred HHHHHhcCCCCCcEEEEEEEeeccHHHHhhCC-----ccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEE
Confidence 88888888899999999999999999998532 356899999999999999999999998877 33333444 34
Q ss_pred ccccccccCCchhHHHHHHHHH
Q psy6533 163 IKEKTVFKMNPATTGNILLKIN 184 (387)
Q Consensus 163 v~~~tv~k~n~~~~~ni~lKiN 184 (387)
+....- .+|..+..+..|++
T Consensus 781 i~d~~g--L~PDkmQrLtfKlC 800 (845)
T KOG1042|consen 781 IYDDMG--LSPDKMQRLTFKLC 800 (845)
T ss_pred EecCCC--CCHHHHHHHHHHHh
Confidence 443322 25677777777766
No 16
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.45 E-value=5.4e-13 Score=136.03 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCeeEEEeeccCChhHHHHHHHhcCCCCCcccccccccccchHHHHHHHHHHHhhhcc
Q psy6533 16 KEEEEKKQKKQKKKKKKVNKV-KPVHIIFYRDGVSEGQFQAVMRRCGPCSNRSVAGLSYTIFTGAEISAIKRACQGVEAN 94 (387)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~n~~-~P~~Ii~yRDGVsegq~~~v~~~~~~~~~~~~~~~~y~~~~~~E~~~ik~a~~~~~~~ 94 (387)
.++++..+++.++.|++.++. +|++|||||||+. .+ .|++++++||..++
T Consensus 237 ~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~--------------------~E~~~i~~a~~~~~-- 287 (404)
T cd04659 237 PADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TD--------------------EEIEGLKEALEELG-- 287 (404)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CH--------------------HHHHHHHHHHHhhC--
Confidence 578999999999999999998 9999999999993 32 79999999999875
Q ss_pred CCCcEEEEEecccccccccCCCCCCCCCCCCCCCCCccccccccccCCCcceeeeeece
Q psy6533 95 YNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVSHQS 153 (387)
Q Consensus 95 ~~Pk~t~Ivv~KrhhtRff~~~~~~~~~~~~~N~~pGTvVD~~Vt~P~~~dfY~~~k~~ 153 (387)
|++++|+|+||||+|||+.+.... ..||++||+||.. .++||+.+|..
T Consensus 288 --~~i~~I~V~k~~~~R~f~~~~~~~----~~np~~GT~v~~~-----~~~~~L~s~g~ 335 (404)
T cd04659 288 --IKVDLVEVIKSGPHRLFRFGTYPN----GFPPRRGTYVKLS-----DDEGLLWTHGS 335 (404)
T ss_pred --ceEEEEEEEecCCcceEEecCCCC----CCCCCCceEEEeC-----CCeEEEEecCC
Confidence 999999999999999999643221 2799999999842 48999999984
No 17
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.4e-06 Score=90.38 Aligned_cols=182 Identities=20% Similarity=0.155 Sum_probs=120.0
Q ss_pred CCcceeeeeeceeeecceeeeccccccccCCchhHHHHHHHHHhhcCCcccccc--------------------------
Q psy6533 142 TDLDFYLVSHQSIQVGILTQCIKEKTVFKMNPATTGNILLKINAKLNGINHYVN-------------------------- 195 (387)
Q Consensus 142 ~~~dfY~~~k~~~~~GI~TQcv~~~tv~k~n~~~~~ni~lKiN~KlGG~n~~l~-------------------------- 195 (387)
..++.|...|+ +..-|++|.+...+..+.-.-++.|++.++-+|-+|+.+.+-
T Consensus 416 kdd~~YailKr-ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~~gpvDaivGlDvsr~~~gn~tV~g 494 (685)
T COG1431 416 KDDVKYAILKR-LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNGLGPVDAIVGLDVSRVSEGNWTVEG 494 (685)
T ss_pred ccchHHHHHHh-hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeeccCCCccceeeeeeeEEeeCCeEEee
Confidence 44567998998 445589999998887766667899999999999999876442
Q ss_pred ---------------------------------------CC-CCceEEEeccCCChhhHHHHHHHHHHHHHHHHhhcccC
Q psy6533 196 ---------------------------------------KV-KPVHIIFYRDGVSEGQFQAVMSAEISAIKRACQGVEAN 235 (387)
Q Consensus 196 ---------------------------------------~~-~P~~IIiYRdGvsegq~~~v~~~Ev~~I~~a~~~~~~~ 235 (387)
|. .-.+|++.||| .+...|+.++++.=..++
T Consensus 495 ct~~f~seg~l~eyy~t~tpa~GErl~~~g~yle~~~~~gfe~~n~iV~lRDG-------~l~~~E~aavkeyg~elg-- 565 (685)
T COG1431 495 CTSCFVSEGGLEEYYHTVTPALGERLETSGRYLEKMNWRGFESRNLIVTLRDG-------KLVAGEIAAVKEYGGELG-- 565 (685)
T ss_pred eeEEEeccCceEEeeecccCCccchhhhHHHHHHHHHhhhhhccCeeEEEecC-------ccchHHHHHHHHHhhhcC--
Confidence 22 23368999999 356677766666555554
Q ss_pred CCCcEEEEEEeeccccccccCCCCCCCCCCCCCCCcceecccccccCCCcceeecc---ccccccccCCceEEEEecCCC
Q psy6533 236 YNPKVTFLVVQKRHHTRFFPTSPSEGDGSRNNNVRPGTIVDTTITHPTDLDFYLVS---HQSIQGTARPTKYYRLWDEYN 312 (387)
Q Consensus 236 ~~Pkit~Ivv~Krh~~Rff~~~~~~~~~~~~~N~~pGTvVd~~it~~~~~dFyL~s---~~~~qGTarPt~Y~Vl~d~~~ 312 (387)
...++ +..++.+-+||.. +. ..+ |-.+-.++..+ -+++ .....||-+|...- +.-+
T Consensus 566 --sn~ev-~~i~knNp~vf~~-e~-----~i~----g~f~~~~~s~~-----h~~~~~ynpv~~gT~~pi~~r---~~~g 624 (685)
T COG1431 566 --SNPEV-NRILKNNPWVFAI-EG-----EIW----GAFVRLDGSTV-----HLCCSPYNPVRRGTPRPIALR---RRDG 624 (685)
T ss_pred --CChhh-heecccCCeEEEe-cc-----eee----eEEEecCCccc-----ccccCCCCceecCCCcccccc---cccC
Confidence 22333 3345666678886 21 111 33332111111 1111 23567888886543 3333
Q ss_pred CCHHHHHHHHHHhhhhccccCCC--ccCcchHHHHHHHHhhhhh
Q psy6533 313 LTDDETEEMTYYLCHLFSRCTRS--VSYPAPTYYAHLAAFRGRV 354 (387)
Q Consensus 313 ~~~d~lq~lT~~Lc~~y~~~~~~--vslPaP~~yA~~~a~R~~~ 354 (387)
.-..++..|.|+|+-|.+....+ ++||||++||+++.+-++.
T Consensus 625 ~l~~e~i~lv~dLT~mNys~~~g~~~rlPApvhYaDk~~kl~~~ 668 (685)
T COG1431 625 KLDGELIGLVHDLTAMNYSNPSGTWSRLPAPVHYADKASKLARY 668 (685)
T ss_pred ccchhhHHHHHHhhhhccCCCCCceecCCcchhhhHHHHHHHhc
Confidence 33444444999999998888888 9999999999999886555
No 18
>PF13032 DUF3893: Domain of unknown function (DUF3893)
Probab=94.93 E-value=0.062 Score=47.21 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=46.3
Q ss_pred ccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhhcc
Q psy6533 298 TARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 298 TarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
.....=.+|+.=...-++++|..|||.||..+.-+...+.+|.|+++|.++.. |+-.
T Consensus 66 ~~~ilEI~V~~~~~~d~~~~lA~~vh~LR~~~~~~~~~l~lP~PLHlak~~~e----Yi~~ 122 (138)
T PF13032_consen 66 NPQILEITVLGCQPEDDPEALAKLVHYLRRSPPLYDENLALPLPLHLAKQAKE----YILP 122 (138)
T ss_pred CCCceEEEEeccCCCCCHHHHHHHHHHHHhCcccccccccCcccHHHHHHHHH----Hccc
Confidence 34455566666566678999999999999999999999999999999998654 6544
No 19
>PRK11617 endonuclease V; Provisional
Probab=61.61 E-value=52 Score=31.35 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCC-------CCCCCCCCCCCCCcceecccccccCCCcc-ee
Q psy6533 217 VMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTS-------PSEGDGSRNNNVRPGTIVDTTITHPTDLD-FY 288 (387)
Q Consensus 217 v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~-------~~~~~~~~~~N~~pGTvVd~~it~~~~~d-Fy 288 (387)
+...|++.|.+|++++. ..|.+.+|=-+=.-|-|.|--- +.+ .-+=..|..-|+.-+-. ....+ ..
T Consensus 79 LaFRE~P~~l~al~~l~--~~PdlllvDG~G~~HPR~~GlA~HlGv~~~~P-tIGVAK~~L~g~~~~~~---~~~G~~~~ 152 (224)
T PRK11617 79 LSFREYPALLAAWEQLS--QKPDLVFVDGHGIAHPRRLGVASHFGLLVDVP-TIGVAKKRLCGKFEPLS---EEPGSLQP 152 (224)
T ss_pred HHHhhHHHHHHHHHhcC--cCCCEEEEcCceeECCCCcceeeEEEeecCCC-EEEEEcccccCCCcCcc---ccCCceee
Confidence 34579999999999986 4688888877766666665430 000 00111233333322100 00111 12
Q ss_pred ecccccccc-------ccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhhhhhhh
Q psy6533 289 LVSHQSIQG-------TARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYI 356 (387)
Q Consensus 289 L~s~~~~qG-------TarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~ 356 (387)
|.-....-| ..+|....+ ...++.+.--.++-++|- --++|.|+..||.++.+.+...
T Consensus 153 l~~~g~vvG~~lrt~~~~kPiyVS~---Gh~i~l~~A~~~v~~~~~-------~yRlPePlR~Ad~ls~~~~~~~ 217 (224)
T PRK11617 153 LMDKGEQLGWVWRSKARCNPLFIST---GHRVSLDSALAWVQRCMK-------GYRLPEPTRWADALASRRPAFV 217 (224)
T ss_pred EeECCEEEEEEEEcCCCCCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHhhhhhhh
Confidence 221111111 234433322 235778888888888773 2378999999999997765543
No 20
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=54.26 E-value=12 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=23.1
Q ss_pred hhccccCCCccCcchHHHHHHHHhhhhhhhcccC
Q psy6533 327 HLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRH 360 (387)
Q Consensus 327 ~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~~ 360 (387)
|.|+---.+-=+|.|+++||++++|....-+...
T Consensus 12 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~ 45 (120)
T PF02772_consen 12 FGYACDETPELMPLPIVLAHRLARRLAEVRKNGE 45 (120)
T ss_dssp EEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSS
T ss_pred EeeEcCCCCccCChHHHHHHHHHHHHHHHHhccc
Confidence 3344444556699999999999998876655433
No 21
>PRK00766 hypothetical protein; Provisional
Probab=39.79 E-value=57 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHhh
Q psy6533 311 YNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAFR 351 (387)
Q Consensus 311 ~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~R 351 (387)
.+.+.++-.+++-.+|-- -++|.|+..||++|..
T Consensus 152 ~gi~l~~A~~lv~~~~~~-------~riPEPlR~Ahlia~~ 185 (194)
T PRK00766 152 AGIDPETAAEIVRLTSTR-------SLIPEPLRLAHLIASG 185 (194)
T ss_pred cCCCHHHHHHHHHHhccC-------CCCchhhHHHHHHHHH
Confidence 578899999999888852 2689999999999864
No 22
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=39.72 E-value=16 Score=29.86 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=27.5
Q ss_pred chHHHHHHHHhhhhhhhcccCCCCCCCccchhhhhcchhhh
Q psy6533 340 APTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFL 380 (387)
Q Consensus 340 aP~~yA~~~a~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (387)
-|+++|..+|+||..|+.=. -++|.|.+.+-++.+-|
T Consensus 42 LPv~Laa~vc~kGa~y~~l~----l~~p~e~rG~Elsae~m 78 (93)
T TIGR02620 42 LPVSLAADICKKGARYFELS----LNVPASVRGTELEAEQL 78 (93)
T ss_pred CCHHHHHHHHhCCcEEEEEE----ccCChHHcCCcccHHHH
Confidence 48999999999999998542 25777777776655544
No 23
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=39.57 E-value=23 Score=35.80 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=28.8
Q ss_pred hhhhccccCCCccCcchHHHHHHHHhhhhhhhcccCCC
Q psy6533 325 LCHLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKNRHLD 362 (387)
Q Consensus 325 Lc~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~~~~~ 362 (387)
+-|.|+-.-.+.=||+|++|||++++|...+-+...+.
T Consensus 125 imFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~ 162 (388)
T COG0192 125 IMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP 162 (388)
T ss_pred eEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence 35666666777889999999999999988865544333
No 24
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=33.30 E-value=24 Score=28.95 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=28.5
Q ss_pred chHHHHHHHHhhhhhhhcccCCCCCCCccchhhhhcchhhh
Q psy6533 340 APTYYAHLAAFRGRVYIKNRHLDMNNLPRENQVHQANAEFL 380 (387)
Q Consensus 340 aP~~yA~~~a~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (387)
-|+++|..+|.||..|+.= .+ ++|.|.+.+-++++-|
T Consensus 42 LPvhLaA~vc~kGa~y~~L---~l-~lp~e~RG~ELsae~m 78 (93)
T PF09652_consen 42 LPVHLAAEVCEKGARYYHL---SL-DLPAEQRGRELSAEQM 78 (93)
T ss_pred CcHHHHHHHHhCCcEEEEE---Ec-cCChHHcCCcccHHHH
Confidence 4899999999999999853 22 6788888777766554
No 25
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=28.50 E-value=2.6e+02 Score=26.21 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCcEEEEEEeeccccccccCCCCC------CCCCCCCCCCcceecccccccCCCcceeec
Q psy6533 217 VMSAEISAIKRACQGVEANYNPKVTFLVVQKRHHTRFFPTSPSE------GDGSRNNNVRPGTIVDTTITHPTDLDFYLV 290 (387)
Q Consensus 217 v~~~Ev~~I~~a~~~~~~~~~Pkit~Ivv~Krh~~Rff~~~~~~------~~~~~~~N~~pGTvVd~~it~~~~~dFyL~ 290 (387)
....|++.+.++++++. ..|.+.+|=-+=..|-|-|----.- ..-+=..+..-|+..+..- ...++-..
T Consensus 75 LafRE~p~l~~~~~~l~--~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~l~g~~~~~~~---~~g~~~~~ 149 (208)
T cd06559 75 LAFREGPPLLEALEKLK--TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSLLVGDGEEPGE---ERGSFTPL 149 (208)
T ss_pred HHHhhHHHHHHHHHhCC--CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccccccCCcCccc---ccCceeee
Confidence 34579999999999996 3688888888877777766530000 0001112233333332110 00111111
Q ss_pred ccc-c-----cc--cccCCceEEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHh
Q psy6533 291 SHQ-S-----IQ--GTARPTKYYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAF 350 (387)
Q Consensus 291 s~~-~-----~q--GTarPt~Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~ 350 (387)
.+. . .. ...+|...++ ...++.++--+++-++|= .-++|.|+..||++++
T Consensus 150 ~~~~~~vG~~~r~~~~~~PiyVS~---Gh~i~l~~A~~~v~~~~~-------~~r~Pep~R~Ad~~sr 207 (208)
T cd06559 150 YDDGEVVGAALRTRDGVKPVYVSP---GHRIDLETAVELVLKCCK-------GYRLPEPTRLADLLSR 207 (208)
T ss_pred ccCCEEEEEEEecCCCCCCEEEcC---CCCcCHHHHHHHHHHHcc-------CCCCCcHHHHHHHHhc
Confidence 111 1 11 1134433322 245678888888887763 2679999999999985
No 26
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=25.91 E-value=44 Score=30.90 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=26.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHhhhhccccCCCccCcchHHHHHHHHh
Q psy6533 304 YYRLWDEYNLTDDETEEMTYYLCHLFSRCTRSVSYPAPTYYAHLAAF 350 (387)
Q Consensus 304 Y~Vl~d~~~~~~d~lq~lT~~Lc~~y~~~~~~vslPaP~~yA~~~a~ 350 (387)
+.|-....+++.++-.++.-.++. --++|.|+..||++|.
T Consensus 140 ~~vyv~~~Gi~~~~A~~li~~~t~-------~g~iPEPLRvAhliA~ 179 (187)
T PF01949_consen 140 GPVYVQSWGIDLEEARELIRRTTL-------HGKIPEPLRVAHLIAS 179 (187)
T ss_dssp TTEEEEEESS-HHHHHHHHHHC-S-------SSSS-HHHHHHHHHHH
T ss_pred ccEEEEEecCCHHHHHHHHHHHhc-------cCCCcccHHHHHHHHH
Confidence 334444457888888888776653 2368999999999985
No 27
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=23.19 E-value=1.8e+02 Score=26.10 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCeeEEEeeccCChhHHHHHH
Q psy6533 19 EEKKQKKQKKKKKKVNKVKPVHIIFYRDGVSEGQFQAVM 57 (387)
Q Consensus 19 ~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGVsegq~~~v~ 57 (387)
|.+.+.+-++...+.+..+|+-|++ || |.||+..+.
T Consensus 61 M~Evl~RR~~~~~~~~~~lPDLilI--DG-G~gQl~aa~ 96 (155)
T PF08459_consen 61 MREVLTRRFKRLKEEKEPLPDLILI--DG-GKGQLNAAK 96 (155)
T ss_dssp HHHHHHHHHCCCHHHT----SEEEE--SS-SHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCCCEEEE--cC-CHHHHHHHH
Confidence 4444444444444555579999887 87 778876554
No 28
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=20.50 E-value=83 Score=32.44 Aligned_cols=32 Identities=19% Similarity=-0.016 Sum_probs=22.6
Q ss_pred hhccccCCCccCcchHHHHHHHHhhhhhhhcc
Q psy6533 327 HLFSRCTRSVSYPAPTYYAHLAAFRGRVYIKN 358 (387)
Q Consensus 327 ~~y~~~~~~vslPaP~~yA~~~a~R~~~~~~~ 358 (387)
|.|+---.+-=+|.|++|||++++|....-+.
T Consensus 132 fGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~ 163 (398)
T PTZ00104 132 FGYATDETEELMPLTHELATKLAKRLSELRKN 163 (398)
T ss_pred eeeecCCCcccCCcHHHHHHHHHHHHHHHHhc
Confidence 33444444666999999999999887655443
No 29
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=20.33 E-value=1.5e+02 Score=27.37 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeeEEEeeccC
Q psy6533 18 EEEKKQKKQKKKKKKVNKVKPVHIIFYRDGV 48 (387)
Q Consensus 18 ~~~~~~~~~~~~~~~~n~~~P~~Ii~yRDGV 48 (387)
+|.+++-+..-.=....+.+|.+|++|-|||
T Consensus 101 ~LG~~Lm~~f~~~L~e~~~~p~~Ifl~n~gV 131 (194)
T TIGR03527 101 ELGRILMKGFIYTLSELDPLPKRILFVNGGV 131 (194)
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEEEccce
Confidence 5666665554444455677899999999999
Done!